Pregenerated sensors for PRAMEL36 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000096230Ensembl transcript IDs: ENSMUST00000179824.2, ENSMUST00000201400.4
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR TCA 72 bp | GTACATTGCCTGAAGTCAGTCTCTGAGCACCCCAGATaGGAGATGTGTCTCAAGACTGTCATTTATTCACAT | + |
Preference number: 3 (lower is better) Translates to: VHCLKSVSEHPR*EMCLKTVIYSH Trigger: ATGTGAATAAATGACAGTCTTGAGACACATCTCTCATCTGGGGTGCTCAGAGACTGACTTCAGGCAATGTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000201400.4 |
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CDS CAA 72 bp | GTCCTTTCTCTGCTGGGCCCACTTCAAGAAGTATGCTaGTGCTTCATCACGGCGGGGCCTGAGGCACAGGTC | + |
Preference number: 6 (lower is better) Translates to: VLSLLGPLQEVC*CFITAGPEAQV Trigger: GACCTGTGCCTCAGGCCCCGCCGTGATGAAGCACAAGCATACTTCTTGAAGTGGGCCCAGCAGAGAAAGGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179824.2 ENSMUST00000201400.4 |
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CDS CAA 90 bp | ACGATTGCCTTCATGAGCTTCTTAAGTCTGCCAGCAAAGGCCTCCTaGAACAGAGCTGGGAAGAGCAGAAAAGGCACCTCCTCCAGACAG | + |
Preference number: 6 (lower is better) Translates to: TIAFMSFLSLPAKAS*NRAGKSRKGTSSRQ Trigger: CTGTCTGGAGGAGGTGCCTTTTCTGCTCTTCCCAGCTCTGTTCAAGGAGGCCTTTGCTGGCAGACTTAAGAAGCTCATGAAGGCAATCGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179824.2 ENSMUST00000201400.4 |
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CDS CAA 90 bp | CACTCCAGAGGGGCAGGGTACTGTTCCACATTCATCTTGTTCCAGTaGGCTGTTTGCTGTAAAAGGTCCTTCAGGATGGGCATGGAGAAG | + |
Preference number: 6 (lower is better) Translates to: HSRGAGYCSTFILFQ*AVCCKRSFRMGMEK Trigger: CTTCTCCATGCCCATCCTGAAGGACCTTTTACAGCAAACAGCCAACTGGAACAAGATGAATGTGGAACAGTACCCTGCCCCTCTGGAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179824.2 ENSMUST00000201400.4 |
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CDS CCA 72 bp | TTTATACAGCACAAATGTAGGGAGTCCTTTCTCTGCTaGGCCCACTTCAAGAAGTATGCTTGTGCTTCATCA | + |
Preference number: 6 (lower is better) Translates to: FIQHKCRESFLC*AHFKKYACASS Trigger: TGATGAAGCACAAGCATACTTCTTGAAGTGGGCCCAGCAGAGAAAGGACTCCCTACATTTGTGCTGTATAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179824.2 ENSMUST00000201400.4 |
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CDS CCA 72 bp | TCTGTGAGAAAGTGGACACCTTGCATGGAGAGATGCTaGAGACAATTGAATTTGGAGAAGATAGAAACGAAC | + |
Preference number: 6 (lower is better) Translates to: SVRKWTPCMERC*RQLNLEKIETN Trigger: GTTCGTTTCTATCTTCTCCAAATTCAATTGTCTCCAGCATCTCTCCATGCAAGGTGTCCACTTTCTCACAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179824.2 ENSMUST00000201400.4 |