Pregenerated sensors for PRAMEL36 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096230

Ensembl transcript IDs: ENSMUST00000179824.2, ENSMUST00000201400.4

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 72 bp	GTACATTGCCTGAAGTCAGTCTCTGAGCACCCCAGATaGGAGATGTGTCTCAAGACTGTCATTTATTCACAT	+
Preference number: 3 (lower is better) Translates to: VHCLKSVSEHPR*EMCLKTVIYSH Trigger: ATGTGAATAAATGACAGTCTTGAGACACATCTCTCATCTGGGGTGCTCAGAGACTGACTTCAGGCAATGTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000201400.4
CDS CAA 72 bp	GTCCTTTCTCTGCTGGGCCCACTTCAAGAAGTATGCTaGTGCTTCATCACGGCGGGGCCTGAGGCACAGGTC	+
Preference number: 6 (lower is better) Translates to: VLSLLGPLQEVC*CFITAGPEAQV Trigger: GACCTGTGCCTCAGGCCCCGCCGTGATGAAGCACAAGCATACTTCTTGAAGTGGGCCCAGCAGAGAAAGGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179824.2 ENSMUST00000201400.4
CDS CAA 90 bp	ACGATTGCCTTCATGAGCTTCTTAAGTCTGCCAGCAAAGGCCTCCTaGAACAGAGCTGGGAAGAGCAGAAAAGGCACCTCCTCCAGACAG	+
Preference number: 6 (lower is better) Translates to: TIAFMSFLSLPAKAS*NRAGKSRKGTSSRQ Trigger: CTGTCTGGAGGAGGTGCCTTTTCTGCTCTTCCCAGCTCTGTTCAAGGAGGCCTTTGCTGGCAGACTTAAGAAGCTCATGAAGGCAATCGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000179824.2 ENSMUST00000201400.4
CDS CAA 90 bp	CACTCCAGAGGGGCAGGGTACTGTTCCACATTCATCTTGTTCCAGTaGGCTGTTTGCTGTAAAAGGTCCTTCAGGATGGGCATGGAGAAG	+
Preference number: 6 (lower is better) Translates to: HSRGAGYCSTFILFQ*AVCCKRSFRMGMEK Trigger: CTTCTCCATGCCCATCCTGAAGGACCTTTTACAGCAAACAGCCAACTGGAACAAGATGAATGTGGAACAGTACCCTGCCCCTCTGGAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000179824.2 ENSMUST00000201400.4
CDS CCA 72 bp	TTTATACAGCACAAATGTAGGGAGTCCTTTCTCTGCTaGGCCCACTTCAAGAAGTATGCTTGTGCTTCATCA	+
Preference number: 6 (lower is better) Translates to: FIQHKCRESFLC*AHFKKYACASS Trigger: TGATGAAGCACAAGCATACTTCTTGAAGTGGGCCCAGCAGAGAAAGGACTCCCTACATTTGTGCTGTATAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179824.2 ENSMUST00000201400.4
CDS CCA 72 bp	TCTGTGAGAAAGTGGACACCTTGCATGGAGAGATGCTaGAGACAATTGAATTTGGAGAAGATAGAAACGAAC	+
Preference number: 6 (lower is better) Translates to: SVRKWTPCMERC*RQLNLEKIETN Trigger: GTTCGTTTCTATCTTCTCCAAATTCAATTGTCTCCAGCATCTCTCCATGCAAGGTGTCCACTTTCTCACAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000179824.2 ENSMUST00000201400.4

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