Pregenerated sensors for PRAMEL34 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070686Ensembl transcript IDs: ENSMUST00000076321.13, ENSMUST00000159578.8, ENSMUST00000160382.5, ENSMUST00000162964.8
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | CAAAAATATCAAGAGTTCAAAGCTAGAATGGAAAGCCTGTTTGCTTaGCTCTATGTTGTCTTCTTACCTTTAGGCATCTTTGATGGGTCC | + |
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Preference number: 2 (lower is better) Translates to: QKYQEFKARMESLFA*LYVVFLPLGIFDGS Trigger: GGACCCATCAAAGATGCCTAAAGGTAAGAAGACAACATAGAGCAAAGCAAACAGGCTTTCCATTCTAGCTTTGAACTCTTGATATTTTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| 3UTR CAA 90 bp | TTCCCCAGATTTAATTGTTACATTCCTGGCATCAATGTGTTAATTTaGACTTCTCTCCAGAGGGCATTTGTGGCAGAGTCCTTAAATTTT | + |
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Preference number: 2 (lower is better) Translates to: FPRFNCYIPGINVLI*TSLQRAFVAESLNF Trigger: AAAATTTAAGGACTCTGCCACAAATGCCCTCTGGAGAGAAGTCAAAATTAACACATTGATGCCAGGAATGTAACAATTAAATCTGGGGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162964.8 |
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| 3UTR-3UTR GCA 90 bp | AAATATCAAGAGTTCAAAGCTAGAATGGAAAGCCTGTTTGCTTTGCTCTATGTTGAAGCCACATATAAATaGCACACTGTTTTTCTGACC | + |
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Preference number: 2 (lower is better) Translates to: KYQEFKARMESLFALLYVEATYK*HTVFLT Trigger: GGTCAGAAAAACAGTGTGGCATTTATATGTGGCTTC...AACATAGAGCAAAGCAAACAGGCTTTCCATTCTAGCTTTGAACTCTTGATATTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| 3UTR TCA 72 bp | TTTGCTCTATGTTGTCTTCTTACCTTTAGGCATCTTTaGTGGGTCCAAGGTGCTTTGTGGTCTGAATGTACT | + |
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Preference number: 3 (lower is better) Translates to: FALCCLLTFRHL*WVQGALWSECT Trigger: AGTACATTCAGACCACAAAGCACCTTGGACCCATCAAAGATGCCTAAAGGTAAGAAGACAACATAGAGCAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS-3UTR TCA 90 bp | TTCAACTTTCTAGACCCTGACCCTGATAGTGATGTTGTTAATAGTCAAAGACCCGCTGAGTACATTGACTaGGGGCAGGTAGGAGGGCAT | + |
|
Preference number: 4 (lower is better) Translates to: FNFLDPDPDSDVVNSQRPAEYID*GQVGGH Trigger: ATGCCCTCCTACCTGCCCTCAGTCAATGTACTCAGC...GGGTCTTTGACTATTAACAACATCACTATCAGGGTCAGGGTCTAGAAAGTTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS-3UTR TCA 90 bp | AGCACTGCAGATAAAAGATGTGTCCCAAGCCTGTCATTTATTCATATCCAGAAGGCTGAGTACATTGACTaGGGGCAGGTAGGAGGGCAT | + |
|
Preference number: 4 (lower is better) Translates to: STADKRCVPSLSFIHIQKAEYID*GQVGGH Trigger: ATGCCCTCCTACCTGCCCTCAGTCAATGTACTCAGC...CTTCTGGATATGAATAAATGACAGGCTTGGGACACATCTTTTATCTGCAGTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS-3UTR CCA 90 bp | ACTGTCTGGGCAGAAGCCACATATAAATGCCACACTGTTTTTCTGACCCCACAATCTGATAACTTGGTCTaGTGGGTCCCAGATCCTCAT | + |
|
Preference number: 4 (lower is better) Translates to: TVWAEATYKCHTVFLTPQSDNLV*WVPDPH Trigger: ATGAGGATCTGGGACCCACCAGACCAAGTTATCAGA...TTGTGGGGTCAGAAAAACAGTGTGGCATTTATATGTGGCTTCTGCCCAGACAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162964.8 |
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| CDS-3UTR GCA 90 bp | CTGTTTGCTTTGCTCTATGTTGTCTTCTTACCTTTAGGCATCTTTGATGGGTCCCCATCTAGCAGGGCTTaGAAGGTTTCTAGGTTAGGC | + |
|
Preference number: 4 (lower is better) Translates to: LFALLYVVFLPLGIFDGSPSSRA*KVSRLG Trigger: GCCTAACCTAGAAACCTTGCAAGCCCTGCTAGATGG...GGACCCATCAAAGATGCCTAAAGGTAAGAAGACAACATAGAGCAAAGCAAACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS-3UTR GCA 90 bp | AAATATCAAGAGTTCAAAGCTAGAATGGAAAGCCTGTTTGCTTTGCTCTATGTTCCATCTAGCAGGGCTTaGAAGGTTTCTAGGTTAGGC | + |
|
Preference number: 4 (lower is better) Translates to: KYQEFKARMESLFALLYVPSSRA*KVSRLG Trigger: GCCTAACCTAGAAACCTTGCAAGCCCTGCTAGATGG...AACATAGAGCAAAGCAAACAGGCTTTCCATTCTAGCTTTGAACTCTTGATATTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS-3UTR CCA 90 bp | AAATATCAAGAGTTCAAAGCTAGAATGGAAAGCCTGTTTGCTTTGCTCTATGTTGGGGATGTATTCTTGTaGAGTGGTGCCAGGAAGACT | + |
|
Preference number: 4 (lower is better) Translates to: KYQEFKARMESLFALLYVGDVFL*SGARKT Trigger: AGTCTTCCTGGCACCACTCCACAAGAATACATCCCC...AACATAGAGCAAAGCAAACAGGCTTTCCATTCTAGCTTTGAACTCTTGATATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162964.8 |
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| CDS-3UTR GCA 90 bp | ATCTATATATACACTGTCTGGGCAGAAGCCACATATAAATGCCACACTGTTTTTATTCTTGTGGAGTGGTaGCAGGAAGACTTTTTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: IYIYTVWAEATYKCHTVFILVEW*QEDFLK Trigger: CTTCAAAAAGTCTTCCTGGCACCACTCCACAAGAAT...AAAAACAGTGTGGCATTTATATGTGGCTTCTGCCCAGACAGTGTATATATAGAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000162964.8 |
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| 3UTR CAA 72 bp | CAAGAGTTCAAAGCTAGAATGGAAAGCCTGTTTGCTTaGCTCTATGTTGTCTTCTTACCTTTAGGCATCTTT | + |
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Preference number: 4 (lower is better) Translates to: QEFKARMESLFA*LYVVFLPLGIF Trigger: AAAGATGCCTAAAGGTAAGAAGACAACATAGAGCAAAGCAAACAGGCTTTCCATTCTAGCTTTGAACTCTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS-3UTR CCA 90 bp | TTCAACTTTCTAGACCCTGACCCTGATAGTGATGTTGTTAATAGTCAAAGACCCTTTTATGAACACACTTaGCTTCTGTGGCATTTGTTA | + |
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Preference number: 4 (lower is better) Translates to: FNFLDPDPDSDVVNSQRPFYEHT*LLWHLL Trigger: TAACAAATGCCACAGAAGCCAAGTGTGTTCATAAAA...GGGTCTTTGACTATTAACAACATCACTATCAGGGTCAGGGTCTAGAAAGTTGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000162964.8 |
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| CDS GCA 90 bp | CACTATAGCACTGCAGAGGGGCAGGGTATTGTTCCACATTCATCTTaGTCCAGTTGGCTGTGTGCTGGAAAAGGGCCTTCAGGGTGCACA | + |
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Preference number: 5 (lower is better) Translates to: HYSTAEGQGIVPHSS*SSWLCAGKGPSGCT Trigger: TGTGCACCCTGAAGGCCCTTTTCCAGCACACAGCCAACTGGAGCAAGATGAATGTGGAACAATACCCTGCCCCTCTGCAGTGCTATAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS CCA 90 bp | ACTGCAGAGGGGCAGGGTATTGTTCCACATTCATCTTGCTCCAGTTaGCTGTGTGCTGGAAAAGGGCCTTCAGGGTGCACATGGAGAAGT | + |
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Preference number: 5 (lower is better) Translates to: TAEGQGIVPHSSCSS*LCAGKGPSGCTWRS Trigger: ACTTCTCCATGTGCACCCTGAAGGCCCTTTTCCAGCACACAGCCAACTGGAGCAAGATGAATGTGGAACAATACCCTGCCCCTCTGCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS-3UTR CAA 90 bp | AGCACTGCAGATAAAAGATGTGTCCCAAGCCTGTCATTTATTCATATCCAGAAGGCCAGGCTGCCACCATaGCCTTTAGGAGATTGGTGT | + |
|
Preference number: 5 (lower is better) Translates to: STADKRCVPSLSFIHIQKARLPP*PLGDWC Trigger: ACACCAATCTCCTAAAGGCAATGGTGGCAGCCTGGC...CTTCTGGATATGAATAAATGACAGGCTTGGGACACATCTTTTATCTGCAGTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS-3UTR CAA 90 bp | ACTGTCTGGGCAGAAGCCACATATAAATGCCACACTGTTTTTCTGACCCCACAATGGGGTGAAACTCTCTaGTCAGTCGCATGTCTATTC | + |
|
Preference number: 5 (lower is better) Translates to: TVWAEATYKCHTVFLTPQWGETL*SVACLF Trigger: GAATAGACATGCGACTGACAAGAGAGTTTCACCCCA...TTGTGGGGTCAGAAAAACAGTGTGGCATTTATATGTGGCTTCTGCCCAGACAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS-3UTR CAA 90 bp | ATCTATATATACACTGTCTGGGCAGAAGCCACATATAAATGCCACACTGTTTTTGCCAGGCTGCCACCATaGCCTTTAGGAGATTGGTGT | + |
|
Preference number: 5 (lower is better) Translates to: IYIYTVWAEATYKCHTVFARLPP*PLGDWC Trigger: ACACCAATCTCCTAAAGGCAATGGTGGCAGCCTGGC...AAAAACAGTGTGGCATTTATATGTGGCTTCTGCCCAGACAGTGTATATATAGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS-3UTR CAA 90 bp | AGCACTGCAGATAAAAGATGTGTCCCAAGCCTGTCATTTATTCATATCCAGAAGTTCATCTTGCTCCAGTaGGCTGTGTGCTGGAAAAGG | + |
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Preference number: 5 (lower is better) Translates to: STADKRCVPSLSFIHIQKFILLQ*AVCWKR Trigger: CCTTTTCCAGCACACAGCCAACTGGAGCAAGATGAA...CTTCTGGATATGAATAAATGACAGGCTTGGGACACATCTTTTATCTGCAGTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS-3UTR CAA 90 bp | ACTGTCTGGGCAGAAGCCACATATAAATGCCACACTGTTTTTCTGACCCCACAAGAGCTCCTGACAAAGTaGGACAAATCTTTCTACAGA | + |
|
Preference number: 5 (lower is better) Translates to: TVWAEATYKCHTVFLTPQELLTK*DKSFYR Trigger: TCTGTAGAAAGATTTGTCCAACTTTGTCAGGAGCTC...TTGTGGGGTCAGAAAAACAGTGTGGCATTTATATGTGGCTTCTGCCCAGACAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS-3UTR CAA 90 bp | TTCAACTTTCTAGACCCTGACCCTGATAGTGATGTTGTTAATAGTCAAAGACCCTGGGGTGAAACTCTCTaGTCAGTCGCATGTCTATTC | + |
|
Preference number: 5 (lower is better) Translates to: FNFLDPDPDSDVVNSQRPWGETL*SVACLF Trigger: GAATAGACATGCGACTGACAAGAGAGTTTCACCCCA...GGGTCTTTGACTATTAACAACATCACTATCAGGGTCAGGGTCTAGAAAGTTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS-3UTR CAA 90 bp | ATCTATATATACACTGTCTGGGCAGAAGCCACATATAAATGCCACACTGTTTTTATAGGGGATGTATTCTaGTGGAGTGGTGCCAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: IYIYTVWAEATYKCHTVFIGDVF*WSGARK Trigger: CTTCCTGGCACCACTCCACAAGAATACATCCCCTAT...AAAAACAGTGTGGCATTTATATGTGGCTTCTGCCCAGACAGTGTATATATAGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162964.8 |
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| CDS-3UTR CAA 90 bp | AAATATCAAGAGTTCAAAGCTAGAATGGAAAGCCTGTTTGCTTTGCTCTATGTTGATGTCTCTGATAACTaGGTCTGGTGGGTCCCAGAT | + |
|
Preference number: 5 (lower is better) Translates to: KYQEFKARMESLFALLYVDVSDN*VWWVPD Trigger: ATCTGGGACCCACCAGACCAAGTTATCAGAGACATC...AACATAGAGCAAAGCAAACAGGCTTTCCATTCTAGCTTTGAACTCTTGATATTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162964.8 |
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| CDS-3UTR CAA 90 bp | AGCACTGCAGATAAAAGATGTGTCCCAAGCCTGTCATTTATTCATATCCAGAAGGGGCTTACCACATTTTaGACAGTTATCTGTAGCAAA | + |
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Preference number: 5 (lower is better) Translates to: STADKRCVPSLSFIHIQKGLTTF*TVICSK Trigger: TTTGCTACAGATAACTGTCAAAAATGTGGTAAGCCC...CTTCTGGATATGAATAAATGACAGGCTTGGGACACATCTTTTATCTGCAGTGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS-3UTR CAA 90 bp | TGTGACACTTTTCTTCCTCCTTCAAAGAATTTGTCTATGTTGCTCACTTTAGTTAACAAGAACAAAGTATaGGGCCCTGGTCATAGACAC | + |
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Preference number: 5 (lower is better) Translates to: CDTFLPPSKNLSMLLTLVNKNKV*GPGHRH Trigger: GTGTCTATGACCAGGGCCCAATACTTTGTTCTTGTT...AACTAAAGTGAGCAACATAGACAAATTCTTTGAAGGAGGAAGAAAAGTGTCACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS-3UTR CAA 90 bp | TTCAACTTTCTAGACCCTGACCCTGATAGTGATGTTGTTAATAGTCAAAGACCCCTGGAGACAGTTGAATaGGGAAAACTGAGAAATAAT | + |
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Preference number: 5 (lower is better) Translates to: FNFLDPDPDSDVVNSQRPLETVE*GKLRNN Trigger: ATTATTTCTCAGTTTTCCCAATTCAACTGTCTCCAG...GGGTCTTTGACTATTAACAACATCACTATCAGGGTCAGGGTCTAGAAAGTTGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162964.8 |
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| CDS GCA 90 bp | AGCTGTAACAGAGTCCAGTCAGTATTCAGTTCTAATTCTGTGATGTaGTCTGGATCAAAAACATTAAAGATGTCTCTGATAACTTGGTCT | + |
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Preference number: 5 (lower is better) Translates to: SCNRVQSVFSSNSVM*SGSKTLKMSLITWS Trigger: AGACCAAGTTATCAGAGACATCTTTAATGTTTTTGATCCAGAGCACATCACAGAATTAGAACTGAATACTGACTGGACTCTGTTACAGCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162964.8 |
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| CDS-3UTR CAA 90 bp | AAATATCAAGAGTTCAAAGCTAGAATGGAAAGCCTGTTTGCTTTGCTCTATGTTGAGCTCCTGACAAAGTaGGACAAATCTTTCTACAGA | + |
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Preference number: 5 (lower is better) Translates to: KYQEFKARMESLFALLYVELLTK*DKSFYR Trigger: TCTGTAGAAAGATTTGTCCAACTTTGTCAGGAGCTC...AACATAGAGCAAAGCAAACAGGCTTTCCATTCTAGCTTTGAACTCTTGATATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS-3UTR CAA 90 bp | TGTTACATTCCTGGCATCAATGTGTTAATTTTGACTTCTCTCCAGAGGGCATTTTATGCCTTTGATTTATaGAAGTGGGAACTGATTGAC | + |
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Preference number: 5 (lower is better) Translates to: CYIPGINVLILTSLQRAFYAFDL*KWELID Trigger: GTCAATCAGTTCCCACTTCAATAAATCAAAGGCATA...AAATGCCCTCTGGAGAGAAGTCAAAATTAACACATTGATGCCAGGAATGTAACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162964.8 |
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| CDS-3UTR CAA 90 bp | TGTGACACTTTTCTTCCTCCTTCAAAGAATTTGTCTATGTTGCTCACTTTAGTTTGCCAGGAAGACTTTTaGAAGATTTTTCATGTGCCC | + |
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Preference number: 5 (lower is better) Translates to: CDTFLPPSKNLSMLLTLVCQEDF*KIFHVP Trigger: GGGCACATGAAAAATCTTCAAAAAGTCTTCCTGGCA...AACTAAAGTGAGCAACATAGACAAATTCTTTGAAGGAGGAAGAAAAGTGTCACA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000162964.8 |
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| CDS-3UTR CAA 90 bp | AAATATCAAGAGTTCAAAGCTAGAATGGAAAGCCTGTTTGCTTTGCTCTATGTTGGGCTTACCACATTTTaGACAGTTATCTGTAGCAAA | + |
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Preference number: 5 (lower is better) Translates to: KYQEFKARMESLFALLYVGLTTF*TVICSK Trigger: TTTGCTACAGATAACTGTCAAAAATGTGGTAAGCCC...AACATAGAGCAAAGCAAACAGGCTTTCCATTCTAGCTTTGAACTCTTGATATTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS TCA 72 bp | GAGAGGGTCTCCAAGGGTGTCATCAGGCACCTGGGGTaGAACTCTCTTGTCAGTCGCATGTCTATTCCATCT | + |
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Preference number: 6 (lower is better) Translates to: ERVSKGVIRHLG*NSLVSRMSIPS Trigger: AGATGGAATAGACATGCGACTGACAAGAGAGTTTCACCCCAGGTGCCTGATGACACCCTTGGAGACCCTCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076321.13 |
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| CDS CAA 72 bp | GGGAAAGGCCAGGCTGCCACCATTGCCTTTAGGAGATaGGTGTGTCTGCCAGCAAAGGCCTCTTTGAATAGT | + |
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Preference number: 6 (lower is better) Translates to: GKGQAATIAFRR*VCLPAKASLNS Trigger: ACTATTCAAAGAGGCCTTTGCTGGCAGACACACCAATCTCCTAAAGGCAATGGTGGCAGCCTGGCCTTTCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000076321.13 ENSMUST00000159578.8 ENSMUST00000160382.5 ENSMUST00000162964.8 |
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| CDS CAA 72 bp | CCAAGGGTGTCATCAGGCACCTGGGGTGAAACTCTCTaGTCAGTCGCATGTCTATTCCATCTAGCAGGGCTT | + |
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Preference number: 6 (lower is better) Translates to: PRVSSGTWGETL*SVACLFHLAGL Trigger: AAGCCCTGCTAGATGGAATAGACATGCGACTGACAAGAGAGTTTCACCCCAGGTGCCTGATGACACCCTTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076321.13 |
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| CDS CAA 90 bp | AGAGGGTCTCCAAGGGTGTCATCAGGCACCTGGGGTGAAACTCTCTaGTCAGTCGCATGTCTATTCCATCTAGCAGGGCTTGCAAGGTTT | + |
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Preference number: 6 (lower is better) Translates to: RGSPRVSSGTWGETL*SVACLFHLAGLARF Trigger: AAACCTTGCAAGCCCTGCTAGATGGAATAGACATGCGACTGACAAGAGAGTTTCACCCCAGGTGCCTGATGACACCCTTGGAGACCCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000076321.13 |
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| CDS CAA 90 bp | ACCATTGCCTTTAGGAGATTGGTGTGTCTGCCAGCAAAGGCCTCTTaGAATAGTGCTGGGAAGACCACAGTAGGCAACTCCTCCAGAGAG | + |
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Preference number: 6 (lower is better) Translates to: TIAFRRLVCLPAKAS*NSAGKTTVGNSSRE Trigger: CTCTCTGGAGGAGTTGCCTACTGTGGTCTTCCCAGCACTATTCAAAGAGGCCTTTGCTGGCAGACACACCAATCTCCTAAAGGCAATGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000076321.13 ENSMUST00000159578.8 ENSMUST00000160382.5 ENSMUST00000162964.8 |
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| CDS CAA 72 bp | ACCCAACTCACTATAGCACTGCAGAGGGGCAGGGTATaGTTCCACATTCATCTTGCTCCAGTTGGCTGTGTG | + |
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Preference number: 6 (lower is better) Translates to: TQLTIALQRGRV*FHIHLAPVGCV Trigger: CACACAGCCAACTGGAGCAAGATGAATGTGGAACAATACCCTGCCCCTCTGCAGTGCTATAGTGAGTTGGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS CAA 90 bp | AGAGACATGACCCAACTCACTATAGCACTGCAGAGGGGCAGGGTATaGTTCCACATTCATCTTGCTCCAGTTGGCTGTGTGCTGGAAAAG | + |
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Preference number: 6 (lower is better) Translates to: RDMTQLTIALQRGRV*FHIHLAPVGCVLEK Trigger: CTTTTCCAGCACACAGCCAACTGGAGCAAGATGAATGTGGAACAATACCCTGCCCCTCTGCAGTGCTATAGTGAGTTGGGTCATGTCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS CAA 72 bp | TTTAGGAGATTGGTGTGTCTGCCAGCAAAGGCCTCTTaGAATAGTGCTGGGAAGACCACAGTAGGCAACTCC | + |
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Preference number: 6 (lower is better) Translates to: FRRLVCLPAKAS*NSAGKTTVGNS Trigger: GGAGTTGCCTACTGTGGTCTTCCCAGCACTATTCAAAGAGGCCTTTGCTGGCAGACACACCAATCTCCTAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000076321.13 ENSMUST00000159578.8 ENSMUST00000160382.5 ENSMUST00000162964.8 |
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| CDS CAA 72 bp | GAACCTGAAGTTTTGCCCTCCTGGGGTGAAACTCTCTaGTCAGTCGCATGTCTATTCCATCTAGCAGGGCTT | + |
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Preference number: 6 (lower is better) Translates to: EPEVLPSWGETL*SVACLFHLAGL Trigger: AAGCCCTGCTAGATGGAATAGACATGCGACTGACAAGAGAGTTTCACCCCAGGAGGGCAAAACTTCAGGTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000159578.8 ENSMUST00000160382.5 ENSMUST00000162964.8 |
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| CDS GCA 72 bp | CTTGTCAGTCGCATGTCTATTCCATCTAGCAGGGCTTaGAAGGTTTCTAGGTTAGGCTTCTTCATCAATGGC | + |
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Preference number: 6 (lower is better) Translates to: LVSRMSIPSSRA*KVSRLGFFING Trigger: GCCATTGATGAAGAAGCCTAACCTAGAAACCTTGCAAGCCCTGCTAGATGGAATAGACATGCGACTGACAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000076321.13 ENSMUST00000159578.8 ENSMUST00000160382.5 ENSMUST00000162964.8 |
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| CDS TCA 72 bp | ATAAATCAAAGTCTCTCTGTGAAATTAGGCATTGAGTaGTGGAGAGGGTCTCCAAGGGTGTCATCAGGCACC | + |
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Preference number: 6 (lower is better) Translates to: INQSLSVKLGIE*WRGSPRVSSGT Trigger: GGTGCCTGATGACACCCTTGGAGACCCTCTCCATCACTCAATGCCTAATTTCACAGAGAGACTTTGATTTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS GCA 72 bp | TGCCTCCGTGCATATCTCGGAAGGACCTTCACTAGCTaGTTTTCATCCAATGTCTTTGATTTACAGTCACTG | + |
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Preference number: 6 (lower is better) Translates to: CLRAYLGRTFTS*FSSNVFDLQSL Trigger: CAGTGACTGTAAATCAAAGACATTGGATGAAAAGCAGCTAGTGAAGGTCCTTCCGAGATATGCACGGAGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000159578.8 ENSMUST00000160382.5 ENSMUST00000162964.8 |
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| CDS TCA 72 bp | AGGGCATTGATCTGGGAGTCCTTCATCCTACACCACTaGAAATCCAGAATCTCAAGAGTGTCTGCTACTTTT | + |
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Preference number: 6 (lower is better) Translates to: RALIWESFILHH*KSRISRVSATF Trigger: AAAAGTAGCAGACACTCTTGAGATTCTGGATTTTCAGTGGTGTAGGATGAAGGACTCCCAGATCAATGCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS TCA 72 bp | GAAAATAAATCAAAGTCTCTCTGTGAAATTAGGCATTaGGTGATGGAGAGGGTCTCCAAGGGTGTCATCAGG | + |
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Preference number: 6 (lower is better) Translates to: ENKSKSLCEIRH*VMERVSKGVIR Trigger: CCTGATGACACCCTTGGAGACCCTCTCCATCACTCAATGCCTAATTTCACAGAGAGACTTTGATTTATTTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000076321.13 ENSMUST00000162964.8 |
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| CDS CAA 72 bp | GAAGGACCTTCACTAGCTGCTTTTCATCCAATGTCTTaGATTTACAGTCACTGTCATTTGCATCAGCCCGTA | + |
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Preference number: 6 (lower is better) Translates to: EGPSLAAFHPMS*IYSHCHLHQPV Trigger: TACGGGCTGATGCAAATGACAGTGACTGTAAATCAAAGACATTGGATGAAAAGCAGCTAGTGAAGGTCCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000159578.8 ENSMUST00000160382.5 ENSMUST00000162964.8 |
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| CDS CAA 90 bp | CTAGCTGCTTTTCATCCAATGTCTTTGATTTACAGTCACTGTCATTaGCATCAGCCCGTATGTTCCAGAAGGCATGGTACATATTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: LAAFHPMSLIYSHCH*HQPVCSRRHGTYFS Trigger: TGAGAAATATGTACCATGCCTTCTGGAACATACGGGCTGATGCAAATGACAGTGACTGTAAATCAAAGACATTGGATGAAAAGCAGCTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000159578.8 ENSMUST00000160382.5 ENSMUST00000162964.8 |
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| CDS CAA 90 bp | TGTGATGTGCTCTGGATCAAAAACATTAAAGATGTCTCTGATAACTaGGTCTGGTGGGTCCCAGATCCTCATCTTTATACAGCAGAAATA | + |
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Preference number: 6 (lower is better) Translates to: CDVLWIKNIKDVSDN*VWWVPDPHLYTAEI Trigger: TATTTCTGCTGTATAAAGATGAGGATCTGGGACCCACCAGACCAAGTTATCAGAGACATCTTTAATGTTTTTGATCCAGAGCACATCACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162964.8 |
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| CDS CCA 72 bp | TCTGGATCAAAAACATTAAAGATGTCTCTGATAACTTaGTCTGGTGGGTCCCAGATCCTCATCTTTATACAG | + |
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Preference number: 6 (lower is better) Translates to: SGSKTLKMSLIT*SGGSQILIFIQ Trigger: CTGTATAAAGATGAGGATCTGGGACCCACCAGACCAAGTTATCAGAGACATCTTTAATGTTTTTGATCCAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162964.8 |
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| CDS CAA 72 bp | CTCTGGATCAAAAACATTAAAGATGTCTCTGATAACTaGGTCTGGTGGGTCCCAGATCCTCATCTTTATACA | + |
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Preference number: 6 (lower is better) Translates to: LWIKNIKDVSDN*VWWVPDPHLYT Trigger: TGTATAAAGATGAGGATCTGGGACCCACCAGACCAAGTTATCAGAGACATCTTTAATGTTTTTGATCCAGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162964.8 |
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| CDS CCA 72 bp | AAAAACATTAAAGATGTCTCTGATAACTTGGTCTGGTaGGTCCCAGATCCTCATCTTTATACAGCAGAAATA | + |
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Preference number: 6 (lower is better) Translates to: KNIKDVSDNLVW*VPDPHLYTAEI Trigger: TATTTCTGCTGTATAAAGATGAGGATCTGGGACCCACCAGACCAAGTTATCAGAGACATCTTTAATGTTTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000162964.8 |
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