Pregenerated sensors for PRAMEL33 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000096044Ensembl transcript IDs: ENSMUST00000179091.5, ENSMUST00000200745.2, ENSMUST00000201432.4
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGGAACTTTGCTTCCTTCATAAAACAACAGTGTCTTTCCAAACCTaGACCTATTCTATCATCCTGACACTGAACCTGGTAGTAAGGTTG | + |
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Preference number: 1 (lower is better) Translates to: LELCFLHKTTVSFQT*TYSIILTLNLVVRL Trigger: CAACCTTACTACCAGGTTCAGTGTCAGGATGATAGAATAGGTCCAGGTTTGGAAAGACACTGTTGTTTTATGAAGGAAGCAAAGTTCCAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| 3UTR-3UTR CAA 90 bp | CCAAACTGTTTTTCTGACTCCATCATGCCCCTGGTCCAACAGTCTATTGGAATACAGTCTCTGAGCACCTaGGATGAGAGATGTGTCCCA | + |
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Preference number: 3 (lower is better) Translates to: PNCFSDSIMPLVQQSIGIQSLST*DERCVP Trigger: TGGGACACATCTCTCATCCAAGGTGCTCAGAGACTG...TATTCCAATAGACTGTTGGACCAGGGGCATGATGGAGTCAGAAAAACAGTTTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| 3UTR CCA 72 bp | TCCCAGTCACTACCCATCTCTTTACTTCTAACCATATaGGAAGTGTCTGAAGTCACAGTCTCTGAGCACCTT | + |
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Preference number: 3 (lower is better) Translates to: SQSLPISLLLTI*EVSEVTVSEHL Trigger: AAGGTGCTCAGAGACTGTGACTTCAGACACTTCCCATATGGTTAGAAGTAAAGAGATGGGTAGTGACTGGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| CDS-3UTR GCA 90 bp | AACAGTGTCTTTCCAAACCTGGACCTATTCTATCATCCTGACACTGAACCTGGTGTGATGGAGAGGGTCTaGAAGGGCGTCCTCAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: NSVFPNLDLFYHPDTEPGVMERV*KGVLRH Trigger: GTGCCTGAGGACGCCCTTGCAGACCCTCTCCATCAC...ACCAGGTTCAGTGTCAGGATGATAGAATAGGTCCAGGTTTGGAAAGACACTGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| CDS-3UTR GCA 90 bp | TTTTCTGACTCCATCATGCCCCTGGTCCAACAGTCTATTGGAATAGTCCACATTCAGCTGTGTCTGCCTTaGTCGCTTCTGGAGTGTGGG | + |
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Preference number: 4 (lower is better) Translates to: FSDSIMPLVQQSIGIVHIQLCLP*SLLECG Trigger: CCCACACTCCAGAAGCGAGCAAGGCAGACACAGCTG...AATGTGGACTATTCCAATAGACTGTTGGACCAGGGGCATGATGGAGTCAGAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| CDS-3UTR GCA 90 bp | GCATTCAGGGTCCCAGTCACTACCCATCTCTTTACTTCTAACCATATGGGAAGTCCATCTAGCAGAGCTTaGAAGGTTTCCAGGTTATGC | + |
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Preference number: 4 (lower is better) Translates to: AFRVPVTTHLFTSNHMGSPSSRA*KVSRLC Trigger: GCATAACCTGGAAACCTTGCAAGCTCTGCTAGATGG...ACTTCCCATATGGTTAGAAGTAAAGAGATGGGTAGTGACTGGGACCCTGAATGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| CDS-3UTR GCA 90 bp | AACAGTGTCTTTCCAAACCTGGACCTATTCTATCATCCTGACACTGAACCTGGTATGATCTTCAGACGCTaGCTCAGTGCATATCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: NSVFPNLDLFYHPDTEPGMIFRR*LSAYLG Trigger: TCCCAGATATGCACTGAGGCAGCGTCTGAAGATCAT...ACCAGGTTCAGTGTCAGGATGATAGAATAGGTCCAGGTTTGGAAAGACACTGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| CDS-3UTR GCA 90 bp | GGAGACATCATCCAGGTTGATAGGTACACAAAAAGCATCTATATATACTGTCTGTCTCTCAGCTGTGTCTaGCTTGCTCGCTTCTGGAGT | + |
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Preference number: 4 (lower is better) Translates to: GDIIQVDRYTKSIYIYCLSLSCV*LARFWS Trigger: ACTCCAGAAGCGAGCAAGGCAGACACAGCTGAGAGA...CAGACAGTATATATAGATGCTTTTTGTGTACCTATCAACCTGGATGATGTCTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| CDS-3UTR GCA 90 bp | AACAGTGTCTTTCCAAACCTGGACCTATTCTATCATCCTGACACTGAACCTGGTTTCCAGAAGCCATGGTaGACATTTCTCATGTCGAGA | + |
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Preference number: 4 (lower is better) Translates to: NSVFPNLDLFYHPDTEPGFQKPW*TFLMSR Trigger: TCTCGACATGAGAAATGTGCACCATGGCTTCTGGAA...ACCAGGTTCAGTGTCAGGATGATAGAATAGGTCCAGGTTTGGAAAGACACTGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| CDS-3UTR GCA 90 bp | TTTTCTGACTCCATCATGCCCCTGGTCCAACAGTCTATTGGAATAGTCCACATTAGAGTCACTGTCATTTaGATCGCTCCCTATGTTCCA | + |
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Preference number: 4 (lower is better) Translates to: FSDSIMPLVQQSIGIVHIRVTVI*IAPYVP Trigger: TGGAACATAGGGAGCGATGCAAATGACAGTGACTCT...AATGTGGACTATTCCAATAGACTGTTGGACCAGGGGCATGATGGAGTCAGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| 3UTR CAA 72 bp | TATGGGAAGTGTCTGAAGTCACAGTCTCTGAGCACCTaGGATGAGAGATGTGTCCCAAGCATGTCATTTATT | + |
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Preference number: 4 (lower is better) Translates to: YGKCLKSQSLST*DERCVPSMSFI Trigger: AATAAATGACATGCTTGGGACACATCTCTCATCCAAGGTGCTCAGAGACTGTGACTTCAGACACTTCCCATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| CDS-3UTR GCA 90 bp | CTATTCTATCATCCTGACACTGAACCTGGTAGTAAGGTTGGAAAAAGTCCAAGATTGGAAAGGCCAGGCTaGCACCATTGTCTTTATGAG | + |
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Preference number: 4 (lower is better) Translates to: LFYHPDTEPGSKVGKSPRLERPG*HHCLYE Trigger: CTCATAAAGACAATGGTGGCAGCCTGGCCTTTCCAA...TCTTGGACTTTTTCCAACCTTACTACCAGGTTCAGTGTCAGGATGATAGAATAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| CDS-3UTR GCA 90 bp | CCAAACTGTTTTTCTGACTCCATCATGCCCCTGGTCCAACAGTCTATTGGAATATTCATCCAAGGTCTCTaGATCAGAGTCACTGTCATT | + |
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Preference number: 4 (lower is better) Translates to: PNCFSDSIMPLVQQSIGIFIQGL*IRVTVI Trigger: AATGACAGTGACTCTGATGCAGAGACCTTGGATGAA...TATTCCAATAGACTGTTGGACCAGGGGCATGATGGAGTCAGAAAAACAGTTTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| CDS-3UTR GCA 90 bp | CCAAACTGTTTTTCTGACTCCATCATGCCCCTGGTCCAACAGTCTATTGGAATAATTCTTGTGGAGTGGTaGCAGGAAGACTTTTTCAAG | + |
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Preference number: 4 (lower is better) Translates to: PNCFSDSIMPLVQQSIGIILVEW*QEDFFK Trigger: CTTGAAAAAGTCTTCCTGGCACCACTCCACAAGAAT...TATTCCAATAGACTGTTGGACCAGGGGCATGATGGAGTCAGAAAAACAGTTTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| CDS-3UTR GCA 90 bp | CAAAAAGCATCTATATATACTGTCTGGGCAGAAGCCACATATAAATGCCAAACTCAGGTGGCTGTGTGCTaGAAAAGGTCCTTCAGGATG | + |
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Preference number: 4 (lower is better) Translates to: QKASIYTVWAEATYKCQTQVAVC*KRSFRM Trigger: CATCCTGAAGGACCTTTTGCAGCACACAGCCACCTG...AGTTTGGCATTTATATGTGGCTTCTGCCCAGACAGTATATATAGATGCTTTTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| CDS-3UTR GCA 90 bp | CAAAAAGCATCTATATATACTGTCTGGGCAGAAGCCACATATAAATGCCAAACTACAGGAACAAAGCCTTaGCCCCTGGCCATAGACACA | + |
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Preference number: 4 (lower is better) Translates to: QKASIYTVWAEATYKCQTTGTKP*PLAIDT Trigger: TGTGTCTATGGCCAGGGGGCAAGGCTTTGTTCCTGT...AGTTTGGCATTTATATGTGGCTTCTGCCCAGACAGTATATATAGATGCTTTTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| CDS-3UTR GCA 90 bp | CCAAACTGTTTTTCTGACTCCATCATGCCCCTGGTCCAACAGTCTATTGGAATAGATAACTTTGTCTGGTaGATCCCAGATCTTCATCTT | + |
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Preference number: 4 (lower is better) Translates to: PNCFSDSIMPLVQQSIGIDNFVW*IPDLHL Trigger: AAGATGAAGATCTGGGATGCACCAGACAAAGTTATC...TATTCCAATAGACTGTTGGACCAGGGGCATGATGGAGTCAGAAAAACAGTTTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| CDS-3UTR GCA 90 bp | GGAGACATCATCCAGGTTGATAGGTACACAAAAAGCATCTATATATACTGTCTGATGGACCCCTTTCTCTaGTTGGCCCAATTCAAGAAA | + |
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Preference number: 4 (lower is better) Translates to: GDIIQVDRYTKSIYIYCLMDPFL*LAQFKK Trigger: TTTCTTGAATTGGGCCAAGCAGAGAAAGGGGTCCAT...CAGACAGTATATATAGATGCTTTTTGTGTACCTATCAACCTGGATGATGTCTCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| CDS-3UTR GCA 90 bp | CCAAACTGTTTTTCTGACTCCATCATGCCCCTGGTCCAACAGTCTATTGGAATATTGGCAGACATTTGTTaGAAAAGATATGCTCTTAGG | + |
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Preference number: 4 (lower is better) Translates to: PNCFSDSIMPLVQQSIGILADIC*KRYALR Trigger: CCTAAGAGCATATCTTTTGCAACAAATGTCTGCCAA...TATTCCAATAGACTGTTGGACCAGGGGCATGATGGAGTCAGAAAAACAGTTTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| CDS-3UTR GCA 90 bp | CTATTCTATCATCCTGACACTGAACCTGGTAGTAAGGTTGGAAAAAGTCCAAGACATAGACACAGGTCTTaGCACAATTTTGGCAGACAT | + |
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Preference number: 4 (lower is better) Translates to: LFYHPDTEPGSKVGKSPRHRHRS*HNFGRH Trigger: ATGTCTGCCAAAATTGTGGCAAGACCTGTGTCTATG...TCTTGGACTTTTTCCAACCTTACTACCAGGTTCAGTGTCAGGATGATAGAATAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| CDS-3UTR GCA 90 bp | GGAGACATCATCCAGGTTGATAGGTACACAAAAAGCATCTATATATACTGTCTGAAGGTTTCCAGGTTATaGATATTTATCAATGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: GDIIQVDRYTKSIYIYCLKVSRL*IFINGP Trigger: GGGGCCATTGATAAATATGCATAACCTGGAAACCTT...CAGACAGTATATATAGATGCTTTTTGTGTACCTATCAACCTGGATGATGTCTCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| CDS CCA 90 bp | TATGAGCGAGTTGTGTCTGCCAGCAAAGGCCTCTTGGAACAGCCATaGGACGTACACAGCTGGCACGCTCTCCAGAGGGGATATGGCCAA | + |
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Preference number: 5 (lower is better) Translates to: YERVVSASKGLLEQP*DVHSWHALQRGYGQ Trigger: TTGGCCATATCCCCTCTGGAGAGCGTGCCAGCTGTGTACGTCCCATGGCTGTTCCAAGAGGCCTTTGCTGGCAGACACAACTCGCTCATA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000179091.5 ENSMUST00000200745.2 ENSMUST00000201432.4 |
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| CDS CCA 90 bp | ACCATTGTCTTTATGAGCGAGTTGTGTCTGCCAGCAAAGGCCTCTTaGAACAGCCATGGGACGTACACAGCTGGCACGCTCTCCAGAGGG | + |
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Preference number: 5 (lower is better) Translates to: TIVFMSELCLPAKAS*NSHGTYTAGTLSRG Trigger: CCCTCTGGAGAGCGTGCCAGCTGTGTACGTCCCATGGCTGTTCCAAGAGGCCTTTGCTGGCAGACACAACTCGCTCATAAAGACAATGGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000179091.5 ENSMUST00000200745.2 ENSMUST00000201432.4 |
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| CDS CCA 90 bp | TGTCTGGTGCATCCCAGATCTTCATCTTTGTACAGCAGAAATTTATaGACCCCTTTCTCTGCTTGGCCCAATTCAAGAAATATGCTTTTT | + |
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Preference number: 5 (lower is better) Translates to: CLVHPRSSSLYSRNL*TPFSAWPNSRNMLF Trigger: AAAAAGCATATTTCTTGAATTGGGCCAAGCAGAGAAAGGGGTCCATAAATTTCTGCTGTACAAAGATGAAGATCTGGGATGCACCAGACA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000179091.5 ENSMUST00000200745.2 ENSMUST00000201432.4 |
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| CDS-3UTR CAA 90 bp | GGAGACATCATCCAGGTTGATAGGTACACAAAAAGCATCTATATATACTGTCTGGGTCTTGCCACAATTTaGGCAGACATTTGTTGCAAA | + |
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Preference number: 5 (lower is better) Translates to: GDIIQVDRYTKSIYIYCLGLATI*ADICCK Trigger: TTTGCAACAAATGTCTGCCAAAATTGTGGCAAGACC...CAGACAGTATATATAGATGCTTTTTGTGTACCTATCAACCTGGATGATGTCTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000201432.4 |
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| CDS CCA 72 bp | GGACGTACACAGCTGGCACGCTCTCCAGAGGGGATATaGCCAAAGCCTCATCTCTCAGCTGTGTCTGCCTTG | + |
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Preference number: 6 (lower is better) Translates to: GRTQLARSPEGI*PKPHLSAVSAL Trigger: CAAGGCAGACACAGCTGAGAGATGAGGCTTTGGCCATATCCCCTCTGGAGAGCGTGCCAGCTGTGTACGTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000179091.5 ENSMUST00000200745.2 ENSMUST00000201432.4 |
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| CDS CAA 90 bp | CACCATTGTCTTTATGAGCGAGTTGTGTCTGCCAGCAAAGGCCTCTaGGAACAGCCATGGGACGTACACAGCTGGCACGCTCTCCAGAGG | + |
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Preference number: 6 (lower is better) Translates to: HHCLYERVVSASKGL*EQPWDVHSWHALQR Trigger: CCTCTGGAGAGCGTGCCAGCTGTGTACGTCCCATGGCTGTTCCAAGAGGCCTTTGCTGGCAGACACAACTCGCTCATAAAGACAATGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000179091.5 ENSMUST00000200745.2 ENSMUST00000201432.4 |
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| CDS CCA 72 bp | TTTATGAGCGAGTTGTGTCTGCCAGCAAAGGCCTCTTaGAACAGCCATGGGACGTACACAGCTGGCACGCTC | + |
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Preference number: 6 (lower is better) Translates to: FMSELCLPAKAS*NSHGTYTAGTL Trigger: GAGCGTGCCAGCTGTGTACGTCCCATGGCTGTTCCAAGAGGCCTTTGCTGGCAGACACAACTCGCTCATAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000179091.5 ENSMUST00000200745.2 ENSMUST00000201432.4 |
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| CDS GCA 72 bp | ACCCATCTCTTTACTTTGCAAACAGGAACAAAGCCTTaGCCCCTGGCCATAGACACAGGTCTTGCCACAATT | + |
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Preference number: 6 (lower is better) Translates to: THLFTLQTGTKP*PLAIDTGLATI Trigger: AATTGTGGCAAGACCTGTGTCTATGGCCAGGGGGCAAGGCTTTGTTCCTGTTTGCAAAGTAAAGAGATGGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179091.5 |
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| CDS CAA 72 bp | TACCCATCTCTTTACTTTGCAAACAGGAACAAAGCCTaGCCCCCTGGCCATAGACACAGGTCTTGCCACAAT | + |
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Preference number: 6 (lower is better) Translates to: YPSLYFANRNKA*PPGHRHRSCHN Trigger: ATTGTGGCAAGACCTGTGTCTATGGCCAGGGGGCAAGGCTTTGTTCCTGTTTGCAAAGTAAAGAGATGGGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000179091.5 |
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| CDS CCA 72 bp | TTATGCATATTTATCAATGGCCCCACAGGGAGATATTaGAAAGGCCAGGCTGCCACCATTGTCTTTATGAGC | + |
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Preference number: 6 (lower is better) Translates to: LCIFINGPTGRY*KGQAATIVFMS Trigger: GCTCATAAAGACAATGGTGGCAGCCTGGCCTTTCCAATATCTCCCTGTGGGGCCATTGATAAATATGCATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000179091.5 ENSMUST00000200745.2 ENSMUST00000201432.4 |
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