Pregenerated sensors for PRAMEL32 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038330Ensembl transcript IDs: ENSMUST00000053304.10, ENSMUST00000107142.3, ENSMUST00000107143.8, ENSMUST00000134155.2, ENSMUST00000156062.2
Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCCACTGGCTGCTTCTGTGTCAACTGTGGTAAGCATTCATCTTCATaGGATCCAGCCCATATCCTCCAAAACTCATGGTGCTCATTCCTC | + |
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Preference number: 1 (lower is better) Translates to: STGCFCVNCGKHSSS*DPAHILQNSWCSFL Trigger: GAGGAATGAGCACCATGAGTTTTGGAGGATATGGGCTGGATCCCATGAAGATGAATGCTTACCACAGTTGACACAGAAGCAGCCAGTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| 3UTR GCA 90 bp | TGCAAATGTTTCTTCACTCCACAGTCAGGACTATTCTCCACTGGCTaGTTCTGTGTCAACTGTGGTAAGCATTCATCTTCATGGGATCCA | + |
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Preference number: 1 (lower is better) Translates to: CKCFFTPQSGLFSTG*FCVNCGKHSSSWDP Trigger: TGGATCCCATGAAGATGAATGCTTACCACAGTTGACACAGAAGCAGCCAGTGGAGAATAGTCCTGACTGTGGAGTGAAGAAACATTTGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| 3UTR GCA 90 bp | ATAATCCTGGAGAAGGAAAGAGTGTGCTTGATATTTTCCTGTAGATaGAACATCCACTCACCAGCTCAGAGAAAGACCTTGCTTTTCCAG | + |
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Preference number: 1 (lower is better) Translates to: IILEKERVCLIFSCR*NIHSPAQRKTLLFQ Trigger: CTGGAAAAGCAAGGTCTTTCTCTGAGCTGGTGAGTGGATGTTGCATCTACAGGAAAATATCAAGCACACTCTTTCCTTCTCCAGGATTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| 3UTR CCA 90 bp | TGGTGCTCATTCCTCAAATTGAGTACTCTGAGTTTGCACCTACTGTaGGAGAAATTTGTAGAATTTTCAGAAGATAAGAGAAGACACATT | + |
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Preference number: 1 (lower is better) Translates to: WCSFLKLSTLSLHLL*EKFVEFSEDKRRHI Trigger: AATGTGTCTTCTCTTATCTTCTGAAAATTCTACAAATTTCTCCCACAGTAGGTGCAAACTCAGAGTACTCAATTTGAGGAATGAGCACCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| 3UTR CAA 90 bp | CACCAGCTCAGAGAAAGACCTTGCTTTTCCAGAATGTCTCAGACCTaGGGGTGCTTGATGTATCCATGCTCCTCTCAGCAATGTACATTC | + |
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Preference number: 2 (lower is better) Translates to: HQLRERPCFSRMSQT*GCLMYPCSSQQCTF Trigger: GAATGTACATTGCTGAGAGGAGCATGGATACATCAAGCACCCCAAGGTCTGAGACATTCTGGAAAAGCAAGGTCTTTCTCTGAGCTGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| 3UTR CAA 90 bp | TTAATGCAACGGGATGTAGCAAAGGCAACTCTCTCGGGCTGTCTTTaGGCCCTGAGTATATCCAGAAGCTCAGTGCATATGTTTCCCAAT | + |
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Preference number: 2 (lower is better) Translates to: LMQRDVAKATLSGCL*ALSISRSSVHMFPN Trigger: ATTGGGAAACATATGCACTGAGCTTCTGGATATACTCAGGGCCAAAAGACAGCCCGAGAGAGTTGCCTTTGCTACATCCCGTTGCATTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107143.8 |
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| 3UTR-3UTR GCA 90 bp | GACCAAGAAGCCACGACATTTAATGCAACGGGATGTAGCAAAGGCAACTCTCTCGTCAACCCACATAATTaGAATTCCAGGGTTTGCAGG | + |
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Preference number: 2 (lower is better) Translates to: DQEATTFNATGCSKGNSLVNPHN*NSRVCR Trigger: CCTGCAAACCCTGGAATTGCAATTATGTGGGTTGAC...GAGAGAGTTGCCTTTGCTACATCCCGTTGCATTAAATGTCGTGGCTTCTTGGTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107143.8 |
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| 3UTR-3UTR GCA 90 bp | GACCAAGAAGCCACGACATTTAATGCAACGGGATGTAGCAAAGGCAACTCTCTCCTCAGAGAAAGACCTTaGTTTTCCAGAATGTCTCAG | + |
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Preference number: 2 (lower is better) Translates to: DQEATTFNATGCSKGNSLLRERP*FSRMSQ Trigger: CTGAGACATTCTGGAAAAGCAAGGTCTTTCTCTGAG...GAGAGAGTTGCCTTTGCTACATCCCGTTGCATTAAATGTCGTGGCTTCTTGGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107143.8 |
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| 3UTR-3UTR GCA 90 bp | TGCTTTTCCAGAATGTCTCAGACCTTGGGGTGCTTGATGTATCCATGCTCCTCTATATTTTCCTGTAGATaGAACATCCACTCACCAGCT | + |
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Preference number: 2 (lower is better) Translates to: CFSRMSQTLGCLMYPCSSIFSCR*NIHSPA Trigger: AGCTGGTGAGTGGATGTTGCATCTACAGGAAAATAT...AGAGGAGCATGGATACATCAAGCACCCCAAGGTCTGAGACATTCTGGAAAAGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| 3UTR CAA 90 bp | GATCCAGCCCATATCCTCCAAAACTCATGGTGCTCATTCCTCAAATaGAGTACTCTGAGTTTGCACCTACTGTGGGAGAAATTTGTAGAA | + |
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Preference number: 2 (lower is better) Translates to: DPAHILQNSWCSFLK*STLSLHLLWEKFVE Trigger: TTCTACAAATTTCTCCCACAGTAGGTGCAAACTCAGAGTACTCAATTTGAGGAATGAGCACCATGAGTTTTGGAGGATATGGGCTGGATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| 3UTR-3UTR GCA 90 bp | AAGACCTTGCTTTTCCAGAATGTCTCAGACCTTGGGGTGCTTGATGTATCCATGATATTTTCCTGTAGATaGAACATCCACTCACCAGCT | + |
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Preference number: 2 (lower is better) Translates to: KTLLFQNVSDLGVLDVSMIFSCR*NIHSPA Trigger: AGCTGGTGAGTGGATGTTGCATCTACAGGAAAATAT...CATGGATACATCAAGCACCCCAAGGTCTGAGACATTCTGGAAAAGCAAGGTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| 3UTR-3UTR GCA 90 bp | GGCCCTGAGTATATCCAGAAGCTCAGTGCATATGTTTCCCAATCTGTGTGTTTCGAGAAGGAAAGAGTGTaGTTGATATTTTCCTGTAGA | + |
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Preference number: 2 (lower is better) Translates to: GPEYIQKLSAYVSQSVCFEKERV*LIFSCR Trigger: TCTACAGGAAAATATCAAGCACACTCTTTCCTTCTC...GAAACACACAGATTGGGAAACATATGCACTGAGCTTCTGGATATACTCAGGGCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107143.8 |
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| 3UTR-3UTR GCA 90 bp | ATCATAGACCAAGAAGCCACGACATTTAATGCAACGGGATGTAGCAAAGGCAACTATCCAGAAGCTCAGTaGATATGTTTCCCAATCTGT | + |
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Preference number: 2 (lower is better) Translates to: IIDQEATTFNATGCSKGNYPEAQ*ICFPIC Trigger: ACAGATTGGGAAACATATGCACTGAGCTTCTGGATA...GTTGCCTTTGCTACATCCCGTTGCATTAAATGTCGTGGCTTCTTGGTCTATGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107143.8 |
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| 3UTR-3UTR CCA 90 bp | CATCTTCATGGGATCCAGCCCATATCCTCCAAAACTCATGGTGCTCATTCCTCAAGTTTGCACCTACTGTaGGAGAAATTTGTAGAATTT | + |
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Preference number: 2 (lower is better) Translates to: HLHGIQPISSKTHGAHSSSLHLL*EKFVEF Trigger: AAATTCTACAAATTTCTCCCACAGTAGGTGCAAACT...TGAGGAATGAGCACCATGAGTTTTGGAGGATATGGGCTGGATCCCATGAAGATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| 3UTR-3UTR GCA 90 bp | TCACATTTATTGTATAAAATCAACAGAGGGGGACAAGCTCCTCATAGAAGAGTGTGCTTGATGTATCCATaGTCCTCTCAGCAATGTACA | + |
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Preference number: 2 (lower is better) Translates to: SHLLYKINRGGQAPHRRVCLMYP*SSQQCT Trigger: TGTACATTGCTGAGAGGAGCATGGATACATCAAGCA...CACTCTTCTATGAGGAGCTTGTCCCCCTCTGTTGATTTTATACAATAAATGTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| 3UTR CAA 90 bp | CTCCAAAACTCATGGTGCTCATTCCTCAAATTGAGTACTCTGAGTTaGCACCTACTGTGGGAGAAATTTGTAGAATTTTCAGAAGATAAG | + |
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Preference number: 2 (lower is better) Translates to: LQNSWCSFLKLSTLS*HLLWEKFVEFSEDK Trigger: CTTATCTTCTGAAAATTCTACAAATTTCTCCCACAGTAGGTGCAAACTCAGAGTACTCAATTTGAGGAATGAGCACCATGAGTTTTGGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| 3UTR-3UTR CCA 90 bp | TTCCTCAAATTGAGTACTCTGAGTTTGCACCTACTGTGGGAGAAATTTGTAGAAACACATTTTACAGTCTaGTATTCTTCCATACCTCAT | + |
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Preference number: 2 (lower is better) Translates to: FLKLSTLSLHLLWEKFVETHFTV*YSSIPH Trigger: ATGAGGTATGGAAGAATACCAGACTGTAAAATGTGT...TTCTACAAATTTCTCCCACAGTAGGTGCAAACTCAGAGTACTCAATTTGAGGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| 3UTR GCA 72 bp | AGACCTTGCTTTTCCAGAATGTCTCAGACCTTGGGGTaGTTGATGTATCCATGCTCCTCTCAGCAATGTACA | + |
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Preference number: 3 (lower is better) Translates to: RPCFSRMSQTLG*LMYPCSSQQCT Trigger: TGTACATTGCTGAGAGGAGCATGGATACATCAAGCACCCCAAGGTCTGAGACATTCTGGAAAAGCAAGGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| 3UTR CCA 72 bp | TGCTTCTGTGTCAACTGTGGTAAGCATTCATCTTCATaGGATCCAGCCCATATCCTCCAAAACTCATGGTGC | + |
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Preference number: 3 (lower is better) Translates to: CFCVNCGKHSSS*DPAHILQNSWC Trigger: GCACCATGAGTTTTGGAGGATATGGGCTGGATCCCATGAAGATGAATGCTTACCACAGTTGACACAGAAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| 3UTR TCA 72 bp | CTTGCTTTTCCAGAATGTCTCAGACCTTGGGGTGCTTaGTGTATCCATGCTCCTCTCAGCAATGTACATTCA | + |
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Preference number: 3 (lower is better) Translates to: LAFPECLRPWGA*CIHAPLSNVHS Trigger: TGAATGTACATTGCTGAGAGGAGCATGGATACATCAAGCACCCCAAGGTCTGAGACATTCTGGAAAAGCAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| 3UTR GCA 72 bp | TCATGGGATCCAGCCCATATCCTCCAAAACTCATGGTaGTCATTCCTCAAATTGAGTACTCTGAGTTTGCAC | + |
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Preference number: 3 (lower is better) Translates to: SWDPAHILQNSW*SFLKLSTLSLH Trigger: GTGCAAACTCAGAGTACTCAATTTGAGGAATGAGCACCATGAGTTTTGGAGGATATGGGCTGGATCCCATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| 3UTR GCA 72 bp | TTCTTCACTCCACAGTCAGGACTATTCTCCACTGGCTaGTTCTGTGTCAACTGTGGTAAGCATTCATCTTCA | + |
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Preference number: 3 (lower is better) Translates to: FFTPQSGLFSTG*FCVNCGKHSSS Trigger: TGAAGATGAATGCTTACCACAGTTGACACAGAAGCAGCCAGTGGAGAATAGTCCTGACTGTGGAGTGAAGAA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| 3UTR CCA 72 bp | TCTTCATGGGATCCAGCCCATATCCTCCAAAACTCATaGTGCTCATTCCTCAAATTGAGTACTCTGAGTTTG | + |
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Preference number: 3 (lower is better) Translates to: SSWDPAHILQNS*CSFLKLSTLSL Trigger: CAAACTCAGAGTACTCAATTTGAGGAATGAGCACCATGAGTTTTGGAGGATATGGGCTGGATCCCATGAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| 3UTR GCA 72 bp | TGTCAAACCACAATAATCCTGGAGAAGGAAAGAGTGTaGTTGATATTTTCCTGTAGATGCAACATCCACTCA | + |
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Preference number: 3 (lower is better) Translates to: CQTTIILEKERV*LIFSCRCNIHS Trigger: TGAGTGGATGTTGCATCTACAGGAAAATATCAAGCACACTCTTTCCTTCTCCAGGATTATTGTGGTTTGACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| 3UTR CCA 72 bp | TTCCTCAAATTGAGTACTCTGAGTTTGCACCTACTGTaGGAGAAATTTGTAGAATTTTCAGAAGATAAGAGA | + |
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Preference number: 3 (lower is better) Translates to: FLKLSTLSLHLL*EKFVEFSEDKR Trigger: TCTCTTATCTTCTGAAAATTCTACAAATTTCTCCCACAGTAGGTGCAAACTCAGAGTACTCAATTTGAGGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| CDS-3UTR CCA 90 bp | ATGTCTCAGACCTTGGGGTGCTTGATGTATCCATGCTCCTCTCAGCAATGTACACCAGCTGCAGGAGGGTaGGTGGGGAGTAGGCATTCA | + |
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Preference number: 4 (lower is better) Translates to: MSQTLGCLMYPCSSQQCTPAAGG*VGSRHS Trigger: TGAATGCCTACTCCCCACCCACCCTCCTGCAGCTGG...TGTACATTGCTGAGAGGAGCATGGATACATCAAGCACCCCAAGGTCTGAGACAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| CDS-3UTR CCA 90 bp | CACAGTCAGGACTATTCTCCACTGGCTGCTTCTGTGTCAACTGTGGTAAGCATTCTGCAGGAGGGTGGGTaGGGAGTAGGCATTCATTGT | + |
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Preference number: 4 (lower is better) Translates to: HSQDYSPLAASVSTVVSILQEGG*GVGIHC Trigger: ACAATGAATGCCTACTCCCCACCCACCCTCCTGCAG...AATGCTTACCACAGTTGACACAGAAGCAGCCAGTGGAGAATAGTCCTGACTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| CDS-3UTR CCA 90 bp | ATGTCTCAGACCTTGGGGTGCTTGATGTATCCATGCTCCTCTCAGCAATGTACACTGCAGGAGGGTGGGTaGGGAGTAGGCATTCATTGT | + |
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Preference number: 4 (lower is better) Translates to: MSQTLGCLMYPCSSQQCTLQEGG*GVGIHC Trigger: ACAATGAATGCCTACTCCCCACCCACCCTCCTGCAG...TGTACATTGCTGAGAGGAGCATGGATACATCAAGCACCCCAAGGTCTGAGACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| 3UTR CAA 72 bp | CGGGATGTAGCAAAGGCAACTCTCTCGGGCTGTCTTTaGGCCCTGAGTATATCCAGAAGCTCAGTGCATATG | + |
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Preference number: 4 (lower is better) Translates to: RDVAKATLSGCL*ALSISRSSVHM Trigger: CATATGCACTGAGCTTCTGGATATACTCAGGGCCAAAAGACAGCCCGAGAGAGTTGCCTTTGCTACATCCCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107143.8 |
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| CDS-3UTR TCA 90 bp | AAGACCTTGCTTTTCCAGAATGTCTCAGACCTTGGGGTGCTTGATGTATCCATGCTCTGGGTAGGTCCTTaGGAGCAGAAATGGCCAAGG | + |
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Preference number: 4 (lower is better) Translates to: KTLLFQNVSDLGVLDVSMLWVGP*EQKWPR Trigger: CCTTGGCCATTTCTGCTCTCAAGGACCTACCCAGAG...CATGGATACATCAAGCACCCCAAGGTCTGAGACATTCTGGAAAAGCAAGGTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| CDS-3UTR CCA 90 bp | TTTCCTGTAGATGCAACATCCACTCACCAGCTCAGAGAAAGACCTTGCTTTTCCCTGCAGGAGGGTGGGTaGGGAGTAGGCATTCATTGT | + |
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Preference number: 4 (lower is better) Translates to: FPVDATSTHQLRERPCFSLQEGG*GVGIHC Trigger: ACAATGAATGCCTACTCCCCACCCACCCTCCTGCAG...GGAAAAGCAAGGTCTTTCTCTGAGCTGGTGAGTGGATGTTGCATCTACAGGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| CDS-3UTR TCA 90 bp | AGACCTTGCTTTTCCAGAATGTCTCAGACCTTGGGGTGCTTGATGTATCCATGCATCCAAGTCCGTCTGTaGGAGAAAACAGTATCGGAG | + |
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Preference number: 4 (lower is better) Translates to: RPCFSRMSQTLGCLMYPCIQVRL*EKTVSE Trigger: CTCCGATACTGTTTTCTCTCACAGACGGACTTGGAT...GCATGGATACATCAAGCACCCCAAGGTCTGAGACATTCTGGAAAAGCAAGGTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| CDS-3UTR GCA 90 bp | TGCTTTTCCAGAATGTCTCAGACCTTGGGGTGCTTGATGTATCCATGCTCCTCTCTATTCTCCACTGGCTaGTTCTGTGTCAACTGTGGT | + |
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Preference number: 4 (lower is better) Translates to: CFSRMSQTLGCLMYPCSSLFSTG*FCVNCG Trigger: ACCACAGTTGACACAGAAGCAGCCAGTGGAGAATAG...AGAGGAGCATGGATACATCAAGCACCCCAAGGTCTGAGACATTCTGGAAAAGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| CDS-3UTR CCA 90 bp | GAGTACTCTGAGTTTGCACCTACTGTGGGAGAAATTTGTAGAATTTTCAGAAGACCAGCTGCAGGAGGGTaGGTGGGGAGTAGGCATTCA | + |
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Preference number: 4 (lower is better) Translates to: EYSEFAPTVGEICRIFRRPAAGG*VGSRHS Trigger: TGAATGCCTACTCCCCACCCACCCTCCTGCAGCTGG...TCTTCTGAAAATTCTACAAATTTCTCCCACAGTAGGTGCAAACTCAGAGTACTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| CDS-3UTR CCA 90 bp | ACCTTGCTTTTCCAGAATGTCTCAGACCTTGGGGTGCTTGATGTATCCATGCTCAGGACTATTCTCCACTaGCTGCTTCTGTGTCAACTG | + |
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Preference number: 4 (lower is better) Translates to: TLLFQNVSDLGVLDVSMLRTILH*LLLCQL Trigger: CAGTTGACACAGAAGCAGCCAGTGGAGAATAGTCCT...GAGCATGGATACATCAAGCACCCCAAGGTCTGAGACATTCTGGAAAAGCAAGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| 3UTR CAA 72 bp | CCTTGCTTTTCCAGAATGTCTCAGACCTTGGGGTGCTaGATGTATCCATGCTCCTCTCAGCAATGTACATTC | + |
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Preference number: 4 (lower is better) Translates to: PCFSRMSQTLGC*MYPCSSQQCTF Trigger: GAATGTACATTGCTGAGAGGAGCATGGATACATCAAGCACCCCAAGGTCTGAGACATTCTGGAAAAGCAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| 3UTR CAA 72 bp | AGAGAAAGACCTTGCTTTTCCAGAATGTCTCAGACCTaGGGGTGCTTGATGTATCCATGCTCCTCTCAGCAA | + |
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Preference number: 4 (lower is better) Translates to: RERPCFSRMSQT*GCLMYPCSSQQ Trigger: TTGCTGAGAGGAGCATGGATACATCAAGCACCCCAAGGTCTGAGACATTCTGGAAAAGCAAGGTCTTTCTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| CDS-3UTR TCA 90 bp | TTAGGATTTCATCAATCCCCACTACTAAGCTTCCATTTCTCAGTTCCACAATCACTCTGGGTAGGTCCTTaGGAGCAGAAATGGCCAAGG | + |
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Preference number: 4 (lower is better) Translates to: LGFHQSPLLSFHFSVPQSLWVGP*EQKWPR Trigger: CCTTGGCCATTTCTGCTCTCAAGGACCTACCCAGAG...TGATTGTGGAACTGAGAAATGGAAGCTTAGTAGTGGGGATTGATGAAATCCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| CDS-3UTR TCA 90 bp | ATGTCTCAGACCTTGGGGTGCTTGATGTATCCATGCTCCTCTCAGCAATGTACATCAGGCTCAGATGTTTaGGCTTACAAATATTCAGGC | + |
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Preference number: 4 (lower is better) Translates to: MSQTLGCLMYPCSSQQCTSGSDV*AYKYSG Trigger: GCCTGAATATTTGTAAGCTCAAACATCTGAGCCTGA...TGTACATTGCTGAGAGGAGCATGGATACATCAAGCACCCCAAGGTCTGAGACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053304.10 |
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| CDS-3UTR GCA 90 bp | ATGTCTCAGACCTTGGGGTGCTTGATGTATCCATGCTCCTCTCAGCAATGTACAGCTGAGAAATCAACTTaGGCCTTTTCTTCTCGTCAA | + |
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Preference number: 4 (lower is better) Translates to: MSQTLGCLMYPCSSQQCTAEKST*AFSSRQ Trigger: TTGACGAGAAGAAAAGGCGCAAGTTGATTTCTCAGC...TGTACATTGCTGAGAGGAGCATGGATACATCAAGCACCCCAAGGTCTGAGACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053304.10 |
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| CDS-3UTR CCA 90 bp | GAAAGACCTTGCTTTTCCAGAATGTCTCAGACCTTGGGGTGCTTGATGTATCCAAAGCATTCATCTTCATaGGATCCAGCCCATATCCTC | + |
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Preference number: 4 (lower is better) Translates to: ERPCFSRMSQTLGCLMYPKHSSS*DPAHIL Trigger: GAGGATATGGGCTGGATCCCATGAAGATGAATGCTT...TGGATACATCAAGCACCCCAAGGTCTGAGACATTCTGGAAAAGCAAGGTCTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| CDS-3UTR CCA 90 bp | ATCATAGACCAAGAAGCCACGACATTTAATGCAACGGGATGTAGCAAAGGCAACAGGACTATTCTCCACTaGCTGCTTCTGTGTCAACTG | + |
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Preference number: 4 (lower is better) Translates to: IIDQEATTFNATGCSKGNRTILH*LLLCQL Trigger: CAGTTGACACAGAAGCAGCCAGTGGAGAATAGTCCT...GTTGCCTTTGCTACATCCCGTTGCATTAAATGTCGTGGCTTCTTGGTCTATGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107143.8 |
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| CDS-3UTR TCA 90 bp | TTGAGTACTCTGAGTTTGCACCTACTGTGGGAGAAATTTGTAGAATTTTCAGAACTCTGGGTAGGTCCTTaGGAGCAGAAATGGCCAAGG | + |
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Preference number: 4 (lower is better) Translates to: LSTLSLHLLWEKFVEFSELWVGP*EQKWPR Trigger: CCTTGGCCATTTCTGCTCTCAAGGACCTACCCAGAG...TTCTGAAAATTCTACAAATTTCTCCCACAGTAGGTGCAAACTCAGAGTACTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| CDS-3UTR GCA 90 bp | CTGGAGAAGGAAAGAGTGTGCTTGATATTTTCCTGTAGATGCAACATCCACTCACTATTCTCCACTGGCTaGTTCTGTGTCAACTGTGGT | + |
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Preference number: 4 (lower is better) Translates to: LEKERVCLIFSCRCNIHSLFSTG*FCVNCG Trigger: ACCACAGTTGACACAGAAGCAGCCAGTGGAGAATAG...TGAGTGGATGTTGCATCTACAGGAAAATATCAAGCACACTCTTTCCTTCTCCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| CDS-3UTR GCA 90 bp | TGCTTTTCCAGAATGTCTCAGACCTTGGGGTGCTTGATGTATCCATGCTCCTCTAAGTCAGTTGTCACCTaGAAATGTTTCTTCACTCCA | + |
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Preference number: 4 (lower is better) Translates to: CFSRMSQTLGCLMYPCSSKSVVT*KCFFTP Trigger: TGGAGTGAAGAAACATTTGCAGGTGACAACTGACTT...AGAGGAGCATGGATACATCAAGCACCCCAAGGTCTGAGACATTCTGGAAAAGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053304.10 |
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| CDS-3UTR TCA 90 bp | TTATTGTATAAAATCAACAGAGGGGGACAAGCTCCTCATAGAAGAGTGCCTCTTATCCAAGTCCGTCTGTaGGAGAAAACAGTATCGGAG | + |
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Preference number: 4 (lower is better) Translates to: LLYKINRGGQAPHRRVPLIQVRL*EKTVSE Trigger: CTCCGATACTGTTTTCTCTCACAGACGGACTTGGAT...AAGAGGCACTCTTCTATGAGGAGCTTGTCCCCCTCTGTTGATTTTATACAATAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| 3UTR CAA 72 bp | CATATCCTCCAAAACTCATGGTGCTCATTCCTCAAATaGAGTACTCTGAGTTTGCACCTACTGTGGGAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: HILQNSWCSFLK*STLSLHLLWEK Trigger: TTTCTCCCACAGTAGGTGCAAACTCAGAGTACTCAATTTGAGGAATGAGCACCATGAGTTTTGGAGGATATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| 3UTR CAA 72 bp | TCAACTTTACACTATTTAGTGCTGGAAAAAGCAACGTaGGGTCTCCAGATCATAGACCAAGAAGCCACGACA | + |
|
Preference number: 4 (lower is better) Translates to: STLHYLVLEKAT*GLQIIDQEATT Trigger: TGTCGTGGCTTCTTGGTCTATGATCTGGAGACCCAACGTTGCTTTTTCCAGCACTAAATAGTGTAAAGTTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107143.8 |
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| CDS-3UTR GCA 90 bp | GTGCTTGATGTATCCATGCTCCTCTCAGCAATGTACATTCACTTAGGATTTCATGTCAACCCACATAATTaGAATTCCAGGGTTTGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: VLDVSMLLSAMYIHLGFHVNPHN*NSRVCR Trigger: CCTGCAAACCCTGGAATTGCAATTATGTGGGTTGAC...ATGAAATCCTAAGTGAATGTACATTGCTGAGAGGAGCATGGATACATCAAGCAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053304.10 |
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| CDS-3UTR GCA 90 bp | CAAATTGAGTACTCTGAGTTTGCACCTACTGTGGGAGAAATTTGTAGAATTTTCCTTTGCTTTTCCCTGTaGCTGGAGCGAACCTTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: QIEYSEFAPTVGEICRIFLCFSL*LERTFG Trigger: ACCAAAGGTTCGCTCCAGGCACAGGGAAAAGCAAAG...GAAAATTCTACAAATTTCTCCCACAGTAGGTGCAAACTCAGAGTACTCAATTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| CDS-3UTR CCA 90 bp | TTGGCCCTGAGTATATCCAGAAGCTCAGTGCATATGTTTCCCAATCTGTGTGTTATCCTCCAAAACTCATaGTGCTCATTCCTCAAATTG | + |
|
Preference number: 4 (lower is better) Translates to: LALSISRSSVHMFPNLCVILQNS*CSFLKL Trigger: CAATTTGAGGAATGAGCACCATGAGTTTTGGAGGAT...AACACACAGATTGGGAAACATATGCACTGAGCTTCTGGATATACTCAGGGCCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107143.8 |
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| CDS-3UTR GCA 90 bp | GATGTATCCATGCTCCTCTCAGCAATGTACATTCACTTAGGATTTCATCAATCCGCTTCTTCAGGTACCTaGAAATGTTTCTTCACTCCA | + |
|
Preference number: 4 (lower is better) Translates to: DVSMLLSAMYIHLGFHQSASSGT*KCFFTP Trigger: TGGAGTGAAGAAACATTTGCAGGTACCTGAAGAAGC...GGATTGATGAAATCCTAAGTGAATGTACATTGCTGAGAGGAGCATGGATACATC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107143.8 |
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| CDS-3UTR CCA 90 bp | TTAGGATTTCATCAATCCCCACTACTAAGCTTCCATTTCTCAGTTCCACAATCAAAGCATTCATCTTCATaGGATCCAGCCCATATCCTC | + |
|
Preference number: 4 (lower is better) Translates to: LGFHQSPLLSFHFSVPQSKHSSS*DPAHIL Trigger: GAGGATATGGGCTGGATCCCATGAAGATGAATGCTT...TGATTGTGGAACTGAGAAATGGAAGCTTAGTAGTGGGGATTGATGAAATCCTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| CDS-3UTR GCA 90 bp | ATAATCCTGGAGAAGGAAAGAGTGTGCTTGATATTTTCCTGTAGATGCAACATCTATCCAGAAGCTCAGTaGATATGTTTCCCAATCTGT | + |
|
Preference number: 4 (lower is better) Translates to: IILEKERVCLIFSCRCNIYPEAQ*ICFPIC Trigger: ACAGATTGGGAAACATATGCACTGAGCTTCTGGATA...GATGTTGCATCTACAGGAAAATATCAAGCACACTCTTTCCTTCTCCAGGATTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053304.10 |
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| CDS-3UTR GCA 90 bp | TTGAGTACTCTGAGTTTGCACCTACTGTGGGAGAAATTTGTAGAATTTTCAGAATTTCTTCCAAAACTTTaGTTTTCCCTGTGCCTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: LSTLSLHLLWEKFVEFSEFLPKL*FSLCLE Trigger: CTCCAGGCACAGGGAAAAGCAAAGTTTTGGAAGAAA...TTCTGAAAATTCTACAAATTTCTCCCACAGTAGGTGCAAACTCAGAGTACTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| CDS-3UTR GCA 90 bp | GTGCTTGATGTATCCATGCTCCTCTCAGCAATGTACATTCACTTAGGATTTCATCTCCTGCACACAGTTTaGATCTATAATTTTGAAGAT | + |
|
Preference number: 4 (lower is better) Translates to: VLDVSMLLSAMYIHLGFHLLHTV*IYNFED Trigger: ATCTTCAAAATTATAGATGCAAACTGTGTGCAGGAG...ATGAAATCCTAAGTGAATGTACATTGCTGAGAGGAGCATGGATACATCAAGCAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053304.10 |
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| CDS-3UTR CCA 90 bp | AAGTCATCACATTTATTGTATAAAATCAACAGAGGGGGACAAGCTCCTCATAGAATCCTCCAAAACTCATaGTGCTCATTCCTCAAATTG | + |
|
Preference number: 4 (lower is better) Translates to: KSSHLLYKINRGGQAPHRILQNS*CSFLKL Trigger: CAATTTGAGGAATGAGCACCATGAGTTTTGGAGGAT...TCTATGAGGAGCTTGTCCCCCTCTGTTGATTTTATACAATAAATGTGATGACTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| CDS-3UTR CAA 90 bp | ATGTCTCAGACCTTGGGGTGCTTGATGTATCCATGCTCCTCTCAGCAATGTACATCAGTAGCTTCTGCCTaGCCAGCTGCAGGAGGGTGG | + |
|
Preference number: 5 (lower is better) Translates to: MSQTLGCLMYPCSSQQCTSVASA*PAAGGW Trigger: CCACCCTCCTGCAGCTGGCAAGGCAGAAGCTACTGA...TGTACATTGCTGAGAGGAGCATGGATACATCAAGCACCCCAAGGTCTGAGACAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| CDS CCA 90 bp | GCAGTATATCTAGTCCCTCAAGCACAGCCTTCAAAGTCTCCAGGTTaGGGTTCTTTATCAGCGTTCCTACAGGAAGGCATGGGAAGGGCC | + |
|
Preference number: 5 (lower is better) Translates to: AVYLVPQAQPSKSPG*GSLSAFLQEGMGRA Trigger: GGCCCTTCCCATGCCTTCCTGTAGGAACGCTGATAAAGAACCCCAACCTGGAGACTTTGAAGGCTGTGCTTGAGGGACTAGATATACTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000053304.10 ENSMUST00000107142.3 ENSMUST00000107143.8 |
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| CDS-3UTR CAA 90 bp | ATCTTCATGGGATCCAGCCCATATCCTCCAAAACTCATGGTGCTCATTCCTCAATCAGTAGCTTCTGCCTaGCCAGCTGCAGGAGGGTGG | + |
|
Preference number: 5 (lower is better) Translates to: IFMGSSPYPPKLMVLIPQSVASA*PAAGGW Trigger: CCACCCTCCTGCAGCTGGCAAGGCAGAAGCTACTGA...TTGAGGAATGAGCACCATGAGTTTTGGAGGATATGGGCTGGATCCCATGAAGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| CDS GCA 90 bp | AACAGTATCGGAGGCACAAAGTCTCCAAGGGCTTCTTCAGGTACCTaGAAATGTTTCTTCACTCCACAGTCAGGACTATTCTCCACTGGC | + |
|
Preference number: 5 (lower is better) Translates to: NSIGGTKSPRASSGT*KCFFTPQSGLFSTG Trigger: GCCAGTGGAGAATAGTCCTGACTGTGGAGTGAAGAAACATTTGCAGGTACCTGAAGAAGCCCTTGGAGACTTTGTGCCTCCGATACTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107143.8 |
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| CDS-3UTR CAA 90 bp | TTATTGTATAAAATCAACAGAGGGGGACAAGCTCCTCATAGAAGAGTGCCTCTTTCAGTAGCTTCTGCCTaGCCAGCTGCAGGAGGGTGG | + |
|
Preference number: 5 (lower is better) Translates to: LLYKINRGGQAPHRRVPLSVASA*PAAGGW Trigger: CCACCCTCCTGCAGCTGGCAAGGCAGAAGCTACTGA...AAGAGGCACTCTTCTATGAGGAGCTTGTCCCCCTCTGTTGATTTTATACAATAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| CDS-3UTR CAA 90 bp | TTTTCCAGAATGTCTCAGACCTTGGGGTGCTTGATGTATCCATGCTCCTCTCAGTTCAAAGTCTCCAGGTaGGGGTTCTTTATCAGCGTT | + |
|
Preference number: 5 (lower is better) Translates to: FSRMSQTLGCLMYPCSSQFKVSR*GFFISV Trigger: AACGCTGATAAAGAACCCCAACCTGGAGACTTTGAA...CTGAGAGGAGCATGGATACATCAAGCACCCCAAGGTCTGAGACATTCTGGAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| CDS-3UTR CAA 90 bp | CTGGAGAAGGAAAGAGTGTGCTTGATATTTTCCTGTAGATGCAACATCCACTCAGTCAGCTGGCTCAGGTaGGCTGTGTGGTACAAAAGT | + |
|
Preference number: 5 (lower is better) Translates to: LEKERVCLIFSCRCNIHSVSWLR*AVWYKS Trigger: ACTTTTGTACCACACAGCCAACCTGAGCCAGCTGAC...TGAGTGGATGTTGCATCTACAGGAAAATATCAAGCACACTCTTTCCTTCTCCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053304.10 |
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| CDS-3UTR CAA 90 bp | TCATCTTCATGGGATCCAGCCCATATCCTCCAAAACTCATGGTGCTCATTCCTCGTTTCTTCCAAAACTTaGCTTTTCCCTGTGCCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: SSSWDPAHILQNSWCSFLVSSKT*LFPVPG Trigger: TCCAGGCACAGGGAAAAGCAAAGTTTTGGAAGAAAC...GAGGAATGAGCACCATGAGTTTTGGAGGATATGGGCTGGATCCCATGAAGATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| CDS TCA 90 bp | CTTACAAATATTCAGGCAATGAGGCAGGTAATCCAAGTCCGTCTGTaGGAGAAAACAGTATCGGAGGCACAAAGTCTCCAAGGGCTTCTT | + |
|
Preference number: 5 (lower is better) Translates to: LTNIQAMRQVIQVRL*EKTVSEAQSLQGLL Trigger: AAGAAGCCCTTGGAGACTTTGTGCCTCCGATACTGTTTTCTCTCACAGACGGACTTGGATTACCTGCCTCATTGCCTGAATATTTGTAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053304.10 |
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| CDS-3UTR CAA 90 bp | TTATTGTATAAAATCAACAGAGGGGGACAAGCTCCTCATAGAAGAGTGCCTCTTTCTCTGGGTAGGTCCTaGAGAGCAGAAATGGCCAAG | + |
|
Preference number: 5 (lower is better) Translates to: LLYKINRGGQAPHRRVPLSLGRS*RAEMAK Trigger: CTTGGCCATTTCTGCTCTCAAGGACCTACCCAGAGA...AAGAGGCACTCTTCTATGAGGAGCTTGTCCCCCTCTGTTGATTTTATACAATAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| CDS-3UTR CAA 90 bp | TTTCCTGTAGATGCAACATCCACTCACCAGCTCAGAGAAAGACCTTGCTTTTCCTTCAAAGTCTCCAGGTaGGGGTTCTTTATCAGCGTT | + |
|
Preference number: 5 (lower is better) Translates to: FPVDATSTHQLRERPCFSFKVSR*GFFISV Trigger: AACGCTGATAAAGAACCCCAACCTGGAGACTTTGAA...GGAAAAGCAAGGTCTTTCTCTGAGCTGGTGAGTGGATGTTGCATCTACAGGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| CDS-3UTR CAA 90 bp | AGACCTTGCTTTTCCAGAATGTCTCAGACCTTGGGGTGCTTGATGTATCCATGCTGCTCATTCCTCAAATaGAGTACTCTGAGTTTGCAC | + |
|
Preference number: 5 (lower is better) Translates to: RPCFSRMSQTLGCLMYPCCSFLK*STLSLH Trigger: GTGCAAACTCAGAGTACTCAATTTGAGGAATGAGCA...GCATGGATACATCAAGCACCCCAAGGTCTGAGACATTCTGGAAAAGCAAGGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| CDS-3UTR CAA 90 bp | TGCTTTTCCAGAATGTCTCAGACCTTGGGGTGCTTGATGTATCCATGCTCCTCTCTCAGGCTCAGATGTTaGAGCTTACAAATATTCAGG | + |
|
Preference number: 5 (lower is better) Translates to: CFSRMSQTLGCLMYPCSSLRLRC*SLQIFR Trigger: CCTGAATATTTGTAAGCTCAAACATCTGAGCCTGAG...AGAGGAGCATGGATACATCAAGCACCCCAAGGTCTGAGACATTCTGGAAAAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053304.10 |
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| CDS TCA 90 bp | AACAGTATCGGAGGCACAAAGTCTCCAAGGGCTTCTTCAGGTACCTaGGGCATTCTATCATATTTCCTTCTGCAAAGGTACCATCTACAT | + |
|
Preference number: 5 (lower is better) Translates to: NSIGGTKSPRASSGT*GILSYFLLQRYHLH Trigger: ATGTAGATGGTACCTTTGCAGAAGGAAATATGATAGAATGCCTCAGGTACCTGAAGAAGCCCTTGGAGACTTTGTGCCTCCGATACTGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053304.10 |
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| CDS-3UTR CAA 90 bp | AAGTCATCACATTTATTGTATAAAATCAACAGAGGGGGACAAGCTCCTCATAGACTCTCGGGCTGTCTTTaGGCCCTGAGTATATCCAGA | + |
|
Preference number: 5 (lower is better) Translates to: KSSHLLYKINRGGQAPHRLSGCL*ALSISR Trigger: TCTGGATATACTCAGGGCCAAAAGACAGCCCGAGAG...TCTATGAGGAGCTTGTCCCCCTCTGTTGATTTTATACAATAAATGTGATGACTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053304.10 |
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| CDS-3UTR CAA 90 bp | AAATTGAGTACTCTGAGTTTGCACCTACTGTGGGAGAAATTTGTAGAATTTTCATCTCTGGGTAGGTCCTaGAGAGCAGAAATGGCCAAG | + |
|
Preference number: 5 (lower is better) Translates to: KLSTLSLHLLWEKFVEFSSLGRS*RAEMAK Trigger: CTTGGCCATTTCTGCTCTCAAGGACCTACCCAGAGA...TGAAAATTCTACAAATTTCTCCCACAGTAGGTGCAAACTCAGAGTACTCAATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| CDS-3UTR CAA 90 bp | GATGTATCCATGCTCCTCTCAGCAATGTACATTCACTTAGGATTTCATCAATCCTGCTCATTCCTCAAATaGAGTACTCTGAGTTTGCAC | + |
|
Preference number: 5 (lower is better) Translates to: DVSMLLSAMYIHLGFHQSCSFLK*STLSLH Trigger: GTGCAAACTCAGAGTACTCAATTTGAGGAATGAGCA...GGATTGATGAAATCCTAAGTGAATGTACATTGCTGAGAGGAGCATGGATACATC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| CDS TCA 90 bp | TTCTGCAAAGGTACCATCTACATAGAGATTCTGGAGACAGTAGAATaGGAAAAGCTGAGAAATCAACTTGCGCCTTTTCTTCTCGTCAAA | + |
|
Preference number: 5 (lower is better) Translates to: FCKGTIYIEILETVE*EKLRNQLAPFLLVK Trigger: TTTGACGAGAAGAAAAGGCGCAAGTTGATTTCTCAGCTTTTCTCATTCTACTGTCTCCAGAATCTCTATGTAGATGGTACCTTTGCAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000134155.2 |
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| CDS GCA 90 bp | AGAAAAGGCAACTCTTCTTCCCAGATACAACTTAGCTCCAGCTCCTaGACACAGTTTGCATCTATAATTTTGAAGATTTCTATGAATGCG | + |
|
Preference number: 5 (lower is better) Translates to: RKGNSSSQIQLSSSS*TQFASIILKISMNA Trigger: CGCATTCATAGAAATCTTCAAAATTATAGATGCAAACTGTGTGCAGGAGCTGGAGCTAAGTTGTATCTGGGAAGAAGAGTTGCCTTTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000053304.10 ENSMUST00000134155.2 ENSMUST00000156062.2 |
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| CDS-3UTR CAA 90 bp | CAAATTGAGTACTCTGAGTTTGCACCTACTGTGGGAGAAATTTGTAGAATTTTCTTCAAAGTCTCCAGGTaGGGGTTCTTTATCAGCGTT | + |
|
Preference number: 5 (lower is better) Translates to: QIEYSEFAPTVGEICRIFFKVSR*GFFISV Trigger: AACGCTGATAAAGAACCCCAACCTGGAGACTTTGAA...GAAAATTCTACAAATTTCTCCCACAGTAGGTGCAAACTCAGAGTACTCAATTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| CDS CAA 90 bp | AGCAGTATATCTAGTCCCTCAAGCACAGCCTTCAAAGTCTCCAGGTaGGGGTTCTTTATCAGCGTTCCTACAGGAAGGCATGGGAAGGGC | + |
|
Preference number: 6 (lower is better) Translates to: SSISSPSSTAFKVSR*GFFISVPTGRHGKG Trigger: GCCCTTCCCATGCCTTCCTGTAGGAACGCTGATAAAGAACCCCAACCTGGAGACTTTGAAGGCTGTGCTTGAGGGACTAGATATACTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000053304.10 ENSMUST00000107142.3 ENSMUST00000107143.8 |
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| CDS CAA 72 bp | TCTAGTCCCTCAAGCACAGCCTTCAAAGTCTCCAGGTaGGGGTTCTTTATCAGCGTTCCTACAGGAAGGCAT | + |
|
Preference number: 6 (lower is better) Translates to: SSPSSTAFKVSR*GFFISVPTGRH Trigger: ATGCCTTCCTGTAGGAACGCTGATAAAGAACCCCAACCTGGAGACTTTGAAGGCTGTGCTTGAGGGACTAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000053304.10 ENSMUST00000107142.3 ENSMUST00000107143.8 |
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| CDS CAA 90 bp | GATCCAGCCCATATCCTCCAAAACTCATGGTGCTCATTCCTCAAATaGAGTACTCTGAGTTTGCACCTACTGGAGCGAACCTTTGGTGCA | + |
|
Preference number: 6 (lower is better) Translates to: DPAHILQNSWCSFLK*STLSLHLLERTFGA Trigger: TGCACCAAAGGTTCGCTCCAGTAGGTGCAAACTCAGAGTACTCAATTTGAGGAATGAGCACCATGAGTTTTGGAGGATATGGGCTGGATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| CDS TCA 72 bp | GGAGGCACAAAGTCTCCAAGGGCTTCTTCAGGTACCTaGGGCATTCTATCATATTTCCTTCTGCAAAGGTAC | + |
|
Preference number: 6 (lower is better) Translates to: GGTKSPRASSGT*GILSYFLLQRY Trigger: GTACCTTTGCAGAAGGAAATATGATAGAATGCCTCAGGTACCTGAAGAAGCCCTTGGAGACTTTGTGCCTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053304.10 |
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| CDS CAA 72 bp | CATATCCTCCAAAACTCATGGTGCTCATTCCTCAAATaGAGTACTCTGAGTTTGCACCTACTGGAGCGAACC | + |
|
Preference number: 6 (lower is better) Translates to: HILQNSWCSFLK*STLSLHLLERT Trigger: GGTTCGCTCCAGTAGGTGCAAACTCAGAGTACTCAATTTGAGGAATGAGCACCATGAGTTTTGGAGGATATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000107143.8 |
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| CDS CCA 72 bp | AGTTGTTTCTTCCAAAACTTTGCTTTTCCCTGTGCCTaGAGCGAACCTTTGGTGCAAGCAGTATATCTAGTC | + |
|
Preference number: 6 (lower is better) Translates to: SCFFQNFAFPCA*SEPLVQAVYLV Trigger: GACTAGATATACTGCTTGCACCAAAGGTTCGCTCCAGGCACAGGGAAAAGCAAAGTTTTGGAAGAAACAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107142.3 |
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| CDS GCA 72 bp | CTTCAGGTACCTGAGGCATTCTATCATATTTCCTTCTaGAAAGGTACCATCTACATAGAGATTCTGGAGACA | + |
|
Preference number: 6 (lower is better) Translates to: LQVPEAFYHISF*KGTIYIEILET Trigger: TGTCTCCAGAATCTCTATGTAGATGGTACCTTTGCAGAAGGAAATATGATAGAATGCCTCAGGTACCTGAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053304.10 ENSMUST00000134155.2 |
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| CDS CAA 72 bp | AGCTCCAGCTCCTGCACACAGTTTGCATCTATAATTTaGAAGATTTCTATGAATGCGTCTTTGGATAAGCCC | + |
|
Preference number: 6 (lower is better) Translates to: SSSSCTQFASII*KISMNASLDKP Trigger: GGGCTTATCCAAAGACGCATTCATAGAAATCTTCAAAATTATAGATGCAAACTGTGTGCAGGAGCTGGAGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000053304.10 ENSMUST00000134155.2 ENSMUST00000156062.2 |
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