Pregenerated sensors for PRAMEL31 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070619Ensembl transcript IDs: ENSMUST00000094526.5
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGAGAACACACCGTTCCCATCTATTCCTGGACAAATCCACATTTTaGAATGCACAACTGTATGATTCCATTAGTCATTTCTCCTCACAG | + |
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Preference number: 1 (lower is better) Translates to: ERTHRSHLFLDKSTF*NAQLYDSISHFSSQ Trigger: CTGTGAGGAGAAATGACTAATGGAATCATACAGTTGTGCATTTCAAAATGTGGATTTGTCCAGGAATAGATGGGAACGGTGTGTTCTCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| 3UTR TCA 90 bp | TTCAGCAATCATGGAGAAGAGAAAAGCATGAGTTCAAGTCCAGCATaGGCTAATATGACACTGTTAAGTAGAAAGAAAGACTGGAAGAAT | + |
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Preference number: 1 (lower is better) Translates to: FSNHGEEKSMSSSPA*ANMTLLSRKKDWKN Trigger: ATTCTTCCAGTCTTTCTTTCTACTTAACAGTGTCATATTAGCTCATGCTGGACTTGAACTCATGCTTTTCTCTTCTCCATGATTGCTGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| 3UTR-3UTR CCA 90 bp | CATGAACAAATTAGAGTTCCCCACTGGACATTTATAATGCAATCCTTCAGGGGAGTGGCCAACAGAGCTTaGGGGCCCCTAATGAATAGC | + |
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Preference number: 2 (lower is better) Translates to: HEQIRVPHWTFIMQSFRGVANRA*GPLMNS Trigger: GCTATTCATTAGGGGCCCCCAAGCTCTGTTGGCCAC...TCCCCTGAAGGATTGCATTATAAATGTCCAGTGGGGAACTCTAATTTGTTCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| 3UTR-3UTR CCA 90 bp | CAAATTAGAGTTCCCCACTGGACATTTATAATGCAATCCTTCAGGGGAGGACAGATCTTTATATGTAGGTaGCCAACAGAGCTTGGGGGC | + |
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Preference number: 2 (lower is better) Translates to: QIRVPHWTFIMQSFRGGQIFICR*PTELGG Trigger: GCCCCCAAGCTCTGTTGGCCACCTACATATAAAGAT...CTGTCCTCCCCTGAAGGATTGCATTATAAATGTCCAGTGGGGAACTCTAATTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| 3UTR-3UTR TCA 90 bp | CATGAACAAATTAGAGTTCCCCACTGGACATTTATAATGCAATCCTTCAGGGGAAGGTTGCCTGCAAGCTaGGCATGGTGGCATTTATCA | + |
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Preference number: 2 (lower is better) Translates to: HEQIRVPHWTFIMQSFRGRLPAS*AWWHLS Trigger: TGATAAATGCCACCATGCTCAGCTTGCAGGCAACCT...TCCCCTGAAGGATTGCATTATAAATGTCCAGTGGGGAACTCTAATTTGTTCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| 3UTR CAA 90 bp | ATCAATGTCAGAAGACATGTGTTCAGGAACCCCTTGATCATAGACTaGTCCTTAGACTTTCATTTCTCAGTTACCAAACGCATCCTTCTC | + |
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Preference number: 2 (lower is better) Translates to: INVRRHVFRNPLIID*SLDFHFSVTKRILL Trigger: GAGAAGGATGCGTTTGGTAACTGAGAAATGAAAGTCTAAGGACAAGTCTATGATCAAGGGGTTCCTGAACACATGTCTTCTGACATTGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| 3UTR CAA 90 bp | TCCAATACATTGATCAATGTCAGAAGACATGTGTTCAGGAACCCCTaGATCATAGACTTGTCCTTAGACTTTCATTTCTCAGTTACCAAA | + |
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Preference number: 2 (lower is better) Translates to: SNTLINVRRHVFRNP*IIDLSLDFHFSVTK Trigger: TTTGGTAACTGAGAAATGAAAGTCTAAGGACAAGTCTATGATCAAGGGGTTCCTGAACACATGTCTTCTGACATTGATCAATGTATTGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| 3UTR CCA 72 bp | AGGTTCAGGAATCATGAACAAATTAGAGTTCCCCACTaGACATTTATAATGCAATCCTTCAGGGGAGGACAG | + |
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Preference number: 3 (lower is better) Translates to: RFRNHEQIRVPH*TFIMQSFRGGQ Trigger: CTGTCCTCCCCTGAAGGATTGCATTATAAATGTCCAGTGGGGAACTCTAATTTGTTCATGATTCCTGAACCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| 3UTR CCA 72 bp | CCTTTAGAGAGAGAACACACCGTTCCCATCTATTCCTaGACAAATCCACATTTTGAAATGCACAACTGTATG | + |
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Preference number: 3 (lower is better) Translates to: PLEREHTVPIYS*TNPHFEMHNCM Trigger: CATACAGTTGTGCATTTCAAAATGTGGATTTGTCCAGGAATAGATGGGAACGGTGTGTTCTCTCTCTAAAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR TCA 90 bp | TATCCTTTAGAGAGAGAACACACCGTTCCCATCTATTCCTGGACAAATCCACATCTTGCAGAGAGCCATTaGCAGGAACTCCAGCGGAGT | + |
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Preference number: 4 (lower is better) Translates to: YPLEREHTVPIYSWTNPHLAESH*QELQRS Trigger: ACTCCGCTGGAGTTCCTGTCAATGGCTCTCTGCAAG...ATGTGGATTTGTCCAGGAATAGATGGGAACGGTGTGTTCTCTCTCTAAAGGATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR TCA 90 bp | TATCCTTTAGAGAGAGAACACACCGTTCCCATCTATTCCTGGACAAATCCACATACACACTGTCTCTGCTaGGCTGTCTTCATCCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: YPLEREHTVPIYSWTNPHTHCLC*AVFILW Trigger: CCAGAGGATGAAGACAGCTCAGCAGAGACAGTGTGT...ATGTGGATTTGTCCAGGAATAGATGGGAACGGTGTGTTCTCTCTCTAAAGGATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR GCA 90 bp | GACATTTATAATGCAATCCTTCAGGGGAGGACAGGGACTTGTCTATCTCCTAGACAGATAGAGTGGGGCTaGCTAACAGTGCGAAGTATG | + |
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Preference number: 4 (lower is better) Translates to: DIYNAILQGRTGTCLSPRQIEWG*LTVRSM Trigger: CATACTTCGCACTGTTAGGCAGCCCCACTCTATCTG...TCTAGGAGATAGACAAGTCCCTGTCCTCCCCTGAAGGATTGCATTATAAATGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR TCA 90 bp | TATCCTTTAGAGAGAGAACACACCGTTCCCATCTATTCCTGGACAAATCCACATTTCCGCTTGCTTGGGTaGAAATTTCCTGTCAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: YPLEREHTVPIYSWTNPHFRLLG*KFPVSC Trigger: GCAGCTGACAGGAAATTTTCACCCAAGCAAGCGGAA...ATGTGGATTTGTCCAGGAATAGATGGGAACGGTGTGTTCTCTCTCTAAAGGATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR GCA 90 bp | CATGAACAAATTAGAGTTCCCCACTGGACATTTATAATGCAATCCTTCAGGGGAGCAAGGTGCAAAGCATaGCAGTGTGGACAGAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: HEQIRVPHWTFIMQSFRGARCKA*QCGQSP Trigger: TGGACTCTGTCCACACTGGCATGCTTTGCACCTTGC...TCCCCTGAAGGATTGCATTATAAATGTCCAGTGGGGAACTCTAATTTGTTCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR GCA 90 bp | AGACTGGAAGAATATCCTTTAGAGAGAGAACACACCGTTCCCATCTATTCCTGGCTGACTGTGAGTACTTaGAGAGAGCCATTGACAGGA | + |
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Preference number: 4 (lower is better) Translates to: RLEEYPLEREHTVPIYSWLTVST*REPLTG Trigger: TCCTGTCAATGGCTCTCTGCAAGTACTCACAGTCAG...CCAGGAATAGATGGGAACGGTGTGTTCTCTCTCTAAAGGATATTCTTCCAGTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR CCA 90 bp | TCCTTTAGAGAGAGAACACACCGTTCCCATCTATTCCTGGACAAATCCACATTTCAAAGCATGCCAGTGTaGACAGAGTCCAGCCTGTAT | + |
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Preference number: 4 (lower is better) Translates to: SFRERTHRSHLFLDKSTFQSMPV*TESSLY Trigger: ATACAGGCTGGACTCTGTCCACACTGGCATGCTTTG...AAATGTGGATTTGTCCAGGAATAGATGGGAACGGTGTGTTCTCTCTCTAAAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| 3UTR CAA 72 bp | CTAGATGTCACAGTCAGCCCCTTTGTCTCCAATACATaGATCAATGTCAGAAGACATGTGTTCAGGAACCCC | + |
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Preference number: 4 (lower is better) Translates to: LDVTVSPFVSNT*INVRRHVFRNP Trigger: GGGGTTCCTGAACACATGTCTTCTGACATTGATCAATGTATTGGAGACAAAGGGGCTGACTGTGACATCTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR TCA 90 bp | GAACAAATTAGAGTTCCCCACTGGACATTTATAATGCAATCCTTCAGGGGAGGAGTTGCTTTCTGCTTTTaGCACACTGTCTCTGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: EQIRVPHWTFIMQSFRGGVAFCF*HTVSAE Trigger: CTCAGCAGAGACAGTGTGTCAAAAGCAGAAAGCAAC...TCCTCCCCTGAAGGATTGCATTATAAATGTCCAGTGGGGAACTCTAATTTGTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR TCA 90 bp | AACCCCTTGATCATAGACTTGTCCTTAGACTTTCATTTCTCAGTTACCAAACGCCAGGATAAAGCTCCATaGTCAGCTGGCTTAGGTTGG | + |
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Preference number: 4 (lower is better) Translates to: NPLIIDLSLDFHFSVTKRQDKAP*SAGLGW Trigger: CCAACCTAAGCCAGCTGATCATGGAGCTTTATCCTG...GCGTTTGGTAACTGAGAAATGAAAGTCTAAGGACAAGTCTATGATCAAGGGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR GCA 90 bp | AAGCTGAGCATGGTGGCATTTATCAGTGACTTCAGCAATCATGGAGAAGAGAAAAGCTCTTCTCTCCTGTaGCCACTGCAAGAAGTAAGT | + |
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Preference number: 4 (lower is better) Translates to: KLSMVAFISDFSNHGEEKSSSLL*PLQEVS Trigger: ACTTACTTCTTGCAGTGGGCACAGGAGAGAAGAGCT...TTTCTCTTCTCCATGATTGCTGAAGTCACTGATAAATGCCACCATGCTCAGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR TCA 90 bp | TCCTTTAGAGAGAGAACACACCGTTCCCATCTATTCCTGGACAAATCCACATTTTCCTCTAGATCAAACTaGAGGTGTAGGTCAGTAACC | + |
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Preference number: 4 (lower is better) Translates to: SFRERTHRSHLFLDKSTFSSRSN*RCRSVT Trigger: GGTTACTGACCTACACCTTCAGTTTGATCTAGAGGA...AAATGTGGATTTGTCCAGGAATAGATGGGAACGGTGTGTTCTCTCTCTAAAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR TCA 90 bp | AACCCCTTGATCATAGACTTGTCCTTAGACTTTCATTTCTCAGTTACCAAACGCTGCGAAGTATGTTCATaGGCTCAGAAGAGAGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: NPLIIDLSLDFHFSVTKRCEVCS*AQKRAG Trigger: TCCAGCTCTCTTCTGAGCTCATGAACATACTTCGCA...GCGTTTGGTAACTGAGAAATGAAAGTCTAAGGACAAGTCTATGATCAAGGGGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR TCA 90 bp | GACATTTATAATGCAATCCTTCAGGGGAGGACAGGGACTTGTCTATCTCCTAGAACGTATGTAGAAAAGTaGAGAGTTTCTCGTGGACTA | + |
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Preference number: 4 (lower is better) Translates to: DIYNAILQGRTGTCLSPRTYVEK*RVSRGL Trigger: TAGTCCACGAGAAACTCTTCACTTTTCTACATACGT...TCTAGGAGATAGACAAGTCCCTGTCCTCCCCTGAAGGATTGCATTATAAATGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR GCA 90 bp | GAACAAATTAGAGTTCCCCACTGGACATTTATAATGCAATCCTTCAGGGGAGGATCTATGAGGGTGTGTTaGTTTCTGCTTTTGACACAC | + |
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Preference number: 4 (lower is better) Translates to: EQIRVPHWTFIMQSFRGGSMRVC*FLLLTH Trigger: GTGTGTCAAAAGCAGAAAGCAACACACCCTCATAGA...TCCTCCCCTGAAGGATTGCATTATAAATGTCCAGTGGGGAACTCTAATTTGTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR CCA 90 bp | ACACAATGGCTAGGTTCAGGAATCATGAACAAATTAGAGTTCCCCACTGGACATTCATTAGGACAGACGTaGAGATGTCATTGTCACAGA | + |
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Preference number: 4 (lower is better) Translates to: TQWLGSGIMNKLEFPTGHSLGQT*RCHCHR Trigger: TCTGTGACAATGACATCTCCACGTCTGTCCTAATGA...ATGTCCAGTGGGGAACTCTAATTTGTTCATGATTCCTGAACCTAGCCATTGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| 3UTR CAA 72 bp | AGAAGACATGTGTTCAGGAACCCCTTGATCATAGACTaGTCCTTAGACTTTCATTTCTCAGTTACCAAACGC | + |
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Preference number: 4 (lower is better) Translates to: RRHVFRNPLIID*SLDFHFSVTKR Trigger: GCGTTTGGTAACTGAGAAATGAAAGTCTAAGGACAAGTCTATGATCAAGGGGTTCCTGAACACATGTCTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR TCA 90 bp | CATTTTGAAATGCACAACTGTATGATTCCATTAGTCATTTCTCCTCACAGGTCCCCAAATGCAGATGTTTaGGATGATGGAGACTCTGAC | + |
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Preference number: 4 (lower is better) Translates to: HFEMHNCMIPLVISPHRSPNADV*DDGDSD Trigger: GTCAGAGTCTCCATCATCTCAAACATCTGCATTTGG...GGACCTGTGAGGAGAAATGACTAATGGAATCATACAGTTGTGCATTTCAAAATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR TCA 90 bp | GAACAAATTAGAGTTCCCCACTGGACATTTATAATGCAATCCTTCAGGGGAGGATCAGATCATGCAAAATaGTACCTGCCAAATGCAGAT | + |
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Preference number: 4 (lower is better) Translates to: EQIRVPHWTFIMQSFRGGSDHAK*YLPNAD Trigger: ATCTGCATTTGGCAGGTATCATTTTGCATGATCTGA...TCCTCCCCTGAAGGATTGCATTATAAATGTCCAGTGGGGAACTCTAATTTGTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR TCA 90 bp | TATCCTTTAGAGAGAGAACACACCGTTCCCATCTATTCCTGGACAAATCCACATCATATAAGGCATAACTaGGAGGCAAAACAGATAGAG | + |
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Preference number: 4 (lower is better) Translates to: YPLEREHTVPIYSWTNPHHIRHN*EAKQIE Trigger: CTCTATCTGTTTTGCCTCTCAGTTATGCCTTATATG...ATGTGGATTTGTCCAGGAATAGATGGGAACGGTGTGTTCTCTCTCTAAAGGATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR TCA 90 bp | CATTTTGAAATGCACAACTGTATGATTCCATTAGTCATTTCTCCTCACAGGTCCTTGAGTTTGGAGAACTaGGAAATGAACTTGGTGACG | + |
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Preference number: 4 (lower is better) Translates to: HFEMHNCMIPLVISPHRSLSLEN*EMNLVT Trigger: CGTCACCAAGTTCATTTCTCAGTTCTCCAAACTCAA...GGACCTGTGAGGAGAAATGACTAATGGAATCATACAGTTGTGCATTTCAAAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| 3UTR CAA 72 bp | TTGATCAATGTCAGAAGACATGTGTTCAGGAACCCCTaGATCATAGACTTGTCCTTAGACTTTCATTTCTCA | + |
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Preference number: 4 (lower is better) Translates to: LINVRRHVFRNP*IIDLSLDFHFS Trigger: TGAGAAATGAAAGTCTAAGGACAAGTCTATGATCAAGGGGTTCCTGAACACATGTCTTCTGACATTGATCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR CAA 90 bp | GACATTTATAATGCAATCCTTCAGGGGAGGACAGGGACTTGTCTATCTCCTAGATCTCAGGTCCAGCACTaGAAGCTTCCGCTTGCTTGG | + |
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Preference number: 5 (lower is better) Translates to: DIYNAILQGRTGTCLSPRSQVQH*KLPLAW Trigger: CCAAGCAAGCGGAAGCTTCAAGTGCTGGACCTGAGA...TCTAGGAGATAGACAAGTCCCTGTCCTCCCCTGAAGGATTGCATTATAAATGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR CAA 90 bp | AGACTGGAAGAATATCCTTTAGAGAGAGAACACACCGTTCCCATCTATTCCTGGACTTGCAGAGAGCCATaGACAGGAACTCCAGCGGAG | + |
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Preference number: 5 (lower is better) Translates to: RLEEYPLEREHTVPIYSWTCREP*TGTPAE Trigger: CTCCGCTGGAGTTCCTGTCAATGGCTCTCTGCAAGT...CCAGGAATAGATGGGAACGGTGTGTTCTCTCTCTAAAGGATATTCTTCCAGTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS TCA 90 bp | GTCTCCAGACCATATGTACAGCGCTGTGAACATATAAGGCATAACTaGGAGGCAAAACAGATAGAGTGGGGCTGCCTAACAGTGCGAAGT | + |
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Preference number: 5 (lower is better) Translates to: VSRPYVQRCEHIRHN*EAKQIEWGCLTVRS Trigger: ACTTCGCACTGTTAGGCAGCCCCACTCTATCTGTTTTGCCTCTCAGTTATGCCTTATATGTTCACAGCGCTGTACATATGGTCTGGAGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS GCA 90 bp | GCGAAGTATGTTCATGAGCTCAGAAGAGAGCTGGACAAATCTCTCTaGTCTAAGAACAAAACCGGTTTCATAGCATTCCAGAGGAGCAGG | + |
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Preference number: 5 (lower is better) Translates to: AKYVHELRRELDKSL*SKNKTGFIAFQRSR Trigger: CCTGCTCCTCTGGAATGCTATGAAACCGGTTTTGTTCTTAGAGCAGAGAGATTTGTCCAGCTCTCTTCTGAGCTCATGAACATACTTCGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS CCA 90 bp | AGAGTCCAGCCTGTATTCAATTCCAACTCCTCAATGCAATATGGTTaGAAAATCTGCAAGATCTTCCTGACAGTGTGCATAGCCAATCCC | + |
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Preference number: 5 (lower is better) Translates to: RVQPVFNSNSSMQYG*KICKIFLTVCIANP Trigger: GGGATTGGCTATGCACACTGTCAGGAAGATCTTGCAGATTTTCCAACCATATTGCATTGAGGAGTTGGAATTGAATACAGGCTGGACTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS CCA 90 bp | GGACAGAGTCCAGCCTGTATTCAATTCCAACTCCTCAATGCAATATaGTTGGAAAATCTGCAAGATCTTCCTGACAGTGTGCATAGCCAA | + |
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Preference number: 5 (lower is better) Translates to: GQSPACIQFQLLNAI*LENLQDLPDSVHSQ Trigger: TTGGCTATGCACACTGTCAGGAAGATCTTGCAGATTTTCCAACCATATTGCATTGAGGAGTTGGAATTGAATACAGGCTGGACTCTGTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS-3UTR CAA 90 bp | CATGAACAAATTAGAGTTCCCCACTGGACATTTATAATGCAATCCTTCAGGGGAATCTATGAGGGTGTGTaGCTTTCTGCTTTTGACACA | + |
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Preference number: 5 (lower is better) Translates to: HEQIRVPHWTFIMQSFRGIYEGV*LSAFDT Trigger: TGTGTCAAAAGCAGAAAGCAACACACCCTCATAGAT...TCCCCTGAAGGATTGCATTATAAATGTCCAGTGGGGAACTCTAATTTGTTCATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS CAA 90 bp | GGGCAAAGGACTCCATGTCTGACTGTGAGTACTTGCAGAGAGCCATaGACAGGAACTCCAGCGGAGTCTTCAGACACCCGAGCAATTCAT | + |
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Preference number: 6 (lower is better) Translates to: GQRTPCLTVSTCREP*TGTPAESSDTRAIH Trigger: ATGAATTGCTCGGGTGTCTGAAGACTCCGCTGGAGTTCCTGTCAATGGCTCTCTGCAAGTACTCACAGTCAGACATGGAGTCCTTTGCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS GCA 72 bp | CCTGTCAGCTGCATGTCTACACCATCCAGCACAGCTTaGAATACTGTCATGTCAGGGATGTTCATCAGTGCC | + |
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Preference number: 6 (lower is better) Translates to: PVSCMSTPSSTA*NTVMSGMFISA Trigger: GGCACTGATGAACATCCCTGACATGACAGTATTGCAAGCTGTGCTGGATGGTGTAGACATGCAGCTGACAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS CAA 72 bp | TCCTGTCAGCTGCATGTCTACACCATCCAGCACAGCTaGCAATACTGTCATGTCAGGGATGTTCATCAGTGC | + |
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Preference number: 6 (lower is better) Translates to: SCQLHVYTIQHS*QYCHVRDVHQC Trigger: GCACTGATGAACATCCCTGACATGACAGTATTGCAAGCTGTGCTGGATGGTGTAGACATGCAGCTGACAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS TCA 72 bp | AGGGCGAGATGCTGGAGACTGTTGAGTTTGGAGAACTaGGAAATGAACTTGGTGACGCTCTTCTCCTGTATG | + |
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Preference number: 6 (lower is better) Translates to: RARCWRLLSLEN*EMNLVTLFSCM Trigger: CATACAGGAGAAGAGCGTCACCAAGTTCATTTCTCAGTTCTCCAAACTCAACAGTCTCCAGCATCTCGCCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS GCA 72 bp | GAGTTTACGAAGATTTTTCATCTGACCAAGGCAAGGTaGAAAGCATGCCAGTGTGGACAGAGTCCAGCCTGT | + |
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Preference number: 6 (lower is better) Translates to: EFTKIFHLTKAR*KACQCGQSPAC Trigger: ACAGGCTGGACTCTGTCCACACTGGCATGCTTTGCACCTTGCCTTGGTCAGATGAAAAATCTTCGTAAACTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS CCA 72 bp | ATTTCTCAGGTCCAGCACTTGAAGCTTCCGCTTGCTTaGGTGAAAATTTCCTGTCAGCTGCATGTCTACACC | + |
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Preference number: 6 (lower is better) Translates to: ISQVQHLKLPLA*VKISCQLHVYT Trigger: GGTGTAGACATGCAGCTGACAGGAAATTTTCACCCAAGCAAGCGGAAGCTTCAAGTGCTGGACCTGAGAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS TCA 72 bp | TTTCATAGCATTCCAGAGGAGCAGGATAAAGCTCCATaGTCAGCTGGCTTAGGTTGGCTGTGTGATGCAGAA | + |
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Preference number: 6 (lower is better) Translates to: FHSIPEEQDKAP*SAGLGWLCDAE Trigger: TTCTGCATCACACAGCCAACCTAAGCCAGCTGATCATGGAGCTTTATCCTGCTCCTCTGGAATGCTATGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS GCA 72 bp | ATCTTCCTGACAGTGTGCATAGCCAATCCCCTAATCTaGAATTTCACACAGCACAGGTTCAGGGAAGCTCTT | + |
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Preference number: 6 (lower is better) Translates to: IFLTVCIANPLI*NFTQHRFREAL Trigger: AAGAGCTTCCCTGAACCTGTGCTGTGTGAAATTGCAGATTAGGGGATTGGCTATGCACACTGTCAGGAAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS GCA 72 bp | AAGATTTTTCATCTGACCAAGGCAAGGTGCAAAGCATaGCAGTGTGGACAGAGTCCAGCCTGTATTCAATTC | + |
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Preference number: 6 (lower is better) Translates to: KIFHLTKARCKA*QCGQSPACIQF Trigger: GAATTGAATACAGGCTGGACTCTGTCCACACTGGCATGCTTTGCACCTTGCCTTGGTCAGATGAAAAATCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS CAA 72 bp | TTAAACGTCTCCTCAGTGCATATCTATGAGGGTGTGTaGCTTTCTGCTTTTGACACACTGTCTCTGCTGAGC | + |
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Preference number: 6 (lower is better) Translates to: LNVSSVHIYEGV*LSAFDTLSLLS Trigger: GCTCAGCAGAGACAGTGTGTCAAAAGCAGAAAGCAACACACCCTCATAGATATGCACTGAGGAGACGTTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS TCA 72 bp | GAGCACTTATTCAGGGCAGGGATAAAAGCGATGACCTaGGAGTCTGTCATCCTACAATGTTCTAATTCCAAG | + |
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Preference number: 6 (lower is better) Translates to: EHLFRAGIKAMT*ESVILQCSNSK Trigger: CTTGGAATTAGAACATTGTAGGATGACAGACTCTCAGGTCATCGCTTTTATCCCTGCCCTGAATAAGTGCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS CCA 72 bp | ACAGTGCGAAGTATGTTCATGAGCTCAGAAGAGAGCTaGACAAATCTCTCTGCTCTAAGAACAAAACCGGTT | + |
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Preference number: 6 (lower is better) Translates to: TVRSMFMSSEES*TNLSALRTKPV Trigger: AACCGGTTTTGTTCTTAGAGCAGAGAGATTTGTCCAGCTCTCTTCTGAGCTCATGAACATACTTCGCACTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS GCA 72 bp | AATTCCAACTCCTCAATGCAATATGGTTGGAAAATCTaGAAGATCTTCCTGACAGTGTGCATAGCCAATCCC | + |
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Preference number: 6 (lower is better) Translates to: NSNSSMQYGWKI*KIFLTVCIANP Trigger: GGGATTGGCTATGCACACTGTCAGGAAGATCTTGCAGATTTTCCAACCATATTGCATTGAGGAGTTGGAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS GCA 72 bp | AAGAGGCACAAGACTCAGATCATGCAAAATGATACCTaGCAAATGCAGATGTTTGAGATGATGGAGACTCTG | + |
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Preference number: 6 (lower is better) Translates to: KRHKTQIMQNDT*QMQMFEMMETL Trigger: CAGAGTCTCCATCATCTCAAACATCTGCATTTGGCAGGTATCATTTTGCATGATCTGAGTCTTGTGCCTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS CCA 72 bp | CCAGCCTGTATTCAATTCCAACTCCTCAATGCAATATaGTTGGAAAATCTGCAAGATCTTCCTGACAGTGTG | + |
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Preference number: 6 (lower is better) Translates to: PACIQFQLLNAI*LENLQDLPDSV Trigger: CACACTGTCAGGAAGATCTTGCAGATTTTCCAACCATATTGCATTGAGGAGTTGGAATTGAATACAGGCTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS CAA 72 bp | GCCTGTATTCAATTCCAACTCCTCAATGCAATATGGTaGGAAAATCTGCAAGATCTTCCTGACAGTGTGCAT | + |
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Preference number: 6 (lower is better) Translates to: ACIQFQLLNAIW*ENLQDLPDSVH Trigger: ATGCACACTGTCAGGAAGATCTTGCAGATTTTCCAACCATATTGCATTGAGGAGTTGGAATTGAATACAGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS TCA 72 bp | TCTTCTCCTGTATGTCTGTTGACGTATGTAGAAAAGTaGAGAGTTTCTCGTGGACTAGTGTTAGATGGAGTT | + |
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Preference number: 6 (lower is better) Translates to: SSPVCLLTYVEK*RVSRGLVLDGV Trigger: AACTCCATCTAACACTAGTCCACGAGAAACTCTTCACTTTTCTACATACGTCAACAGACATACAGGAGAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS CCA 72 bp | CCTGTATTCAATTCCAACTCCTCAATGCAATATGGTTaGAAAATCTGCAAGATCTTCCTGACAGTGTGCATA | + |
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Preference number: 6 (lower is better) Translates to: PVFNSNSSMQYG*KICKIFLTVCI Trigger: TATGCACACTGTCAGGAAGATCTTGCAGATTTTCCAACCATATTGCATTGAGGAGTTGGAATTGAATACAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS CAA 72 bp | TCCTACAATGTTCTAATTCCAAGGTCTTCAGAGTGTTaGCAACGTTTTCTAGGAAAATCCCAAGAGGCACAA | + |
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Preference number: 6 (lower is better) Translates to: SYNVLIPRSSEC*QRFLGKSQEAQ Trigger: TTGTGCCTCTTGGGATTTTCCTAGAAAACGTTGCAAACACTCTGAAGACCTTGGAATTAGAACATTGTAGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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| CDS CCA 72 bp | TCTGTTGACGTATGTAGAAAAGTGAAGAGTTTCTCGTaGACTAGTGTTAGATGGAGTTTACGAAGATTTTTC | + |
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Preference number: 6 (lower is better) Translates to: SVDVCRKVKSFS*TSVRWSLRRFF Trigger: GAAAAATCTTCGTAAACTCCATCTAACACTAGTCCACGAGAAACTCTTCACTTTTCTACATACGTCAACAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094526.5 |
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