RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRAMEL30 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078508

Ensembl transcript IDs: ENSMUST00000105751.2

Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ATAATTAGGAGAAAGCCAGTGAAGAAGACTGTCCTGACAGGAGTTTaGACCATTGTTTGCATCATACTGAGAAATGACCAAAACCATGTG +
Preference number: 1 (lower is better)
Translates to: IIRRKPVKKTVLTGV*TIVCIILRNDQNHV
Trigger: CACATGGTTTTGGTCATTTCTCAGTATGATGCAAACAATGGTCCAAACTCCTGTCAGGACAGTCTTCTTCACTGGCTTTCTCCTAATTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
3UTR-3UTR TCA 90 bp TGGACCATTGTTTGCATCATACTGAGAAATGACCAAAACCATGTGTTCTGGGCCCTAGGAATTCATTTCTaGGTACACAGGAGTATTCCT +
Preference number: 2 (lower is better)
Translates to: WTIVCIILRNDQNHVFWALGIHF*VHRSIP
Trigger: AGGAATACTCCTGTGTACTCAGAAATGAATTCCTAG...GGCCCAGAACACATGGTTTTGGTCATTTCTCAGTATGATGCAAACAATGGTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
3UTR TCA 72 bp AGGAGTTTGGACCATTGTTTGCATCATACTGAGAAATaGCCAAAACCATGTGTTCTGGGCCCTCTGGACAAG +
Preference number: 3 (lower is better)
Translates to: RSLDHCLHHTEK*PKPCVLGPLDK
Trigger: CTTGTCCAGAGGGCCCAGAACACATGGTTTTGGTCATTTCTCAGTATGATGCAAACAATGGTCCAAACTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
3UTR CCA 72 bp AGAAAGCCAGTGAAGAAGACTGTCCTGACAGGAGTTTaGACCATTGTTTGCATCATACTGAGAAATGACCAA +
Preference number: 3 (lower is better)
Translates to: RKPVKKTVLTGV*TIVCIILRNDQ
Trigger: TTGGTCATTTCTCAGTATGATGCAAACAATGGTCCAAACTCCTGTCAGGACAGTCTTCTTCACTGGCTTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
3UTR GCA 72 bp AAGAAGACTGTCCTGACAGGAGTTTGGACCATTGTTTaGATCATACTGAGAAATGACCAAAACCATGTGTTC +
Preference number: 3 (lower is better)
Translates to: KKTVLTGVWTIV*IILRNDQNHVF
Trigger: GAACACATGGTTTTGGTCATTTCTCAGTATGATGCAAACAATGGTCCAAACTCCTGTCAGGACAGTCTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR GCA 90 bp TGTGTTCTGGGCCCTCTGGACAAGAGACCAGTCCCTAGGAATTCATTTCTGAGTCACTGTGCAGCCAGCTaGAGGAGAGTGGGTGGGGCT +
Preference number: 4 (lower is better)
Translates to: CVLGPLDKRPVPRNSFLSHCAAS*RRVGGA
Trigger: AGCCCCACCCACTCTCCTGCAGCTGGCTGCACAGTG...ACTCAGAAATGAATTCCTAGGGACTGGTCTCTTGTCCAGAGGGCCCAGAACACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR GCA 90 bp TGTGTTCTGGGCCCTCTGGACAAGAGACCAGTCCCTAGGAATTCATTTCTGAGTCCTCACTGTGCACTGTaGAGCCAGCTGCAGGAGAGT +
Preference number: 4 (lower is better)
Translates to: CVLGPLDKRPVPRNSFLSPHCAL*SQLQES
Trigger: ACTCTCCTGCAGCTGGCTGCACAGTGCACAGTGAGG...ACTCAGAAATGAATTCCTAGGGACTGGTCTCTTGTCCAGAGGGCCCAGAACACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR TCA 90 bp TGTGTTCTGGGCCCTCTGGACAAGAGACCAGTCCCTAGGAATTCATTTCTGAGTCTCAAGTCAACCACTTaGAGCTTCCCCATCCTGGGA +
Preference number: 4 (lower is better)
Translates to: CVLGPLDKRPVPRNSFLSLKSTT*SFPILG
Trigger: TCCCAGGATGGGGAAGCTTCAAGTGGTTGACTTGAG...ACTCAGAAATGAATTCCTAGGGACTGGTCTCTTGTCCAGAGGGCCCAGAACACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR TCA 90 bp TGTGTTCTGGGCCCTCTGGACAAGAGACCAGTCCCTAGGAATTCATTTCTGAGTGACTCCAAGTCTGACTaGGAGATCTGGCACAGAGTG +
Preference number: 4 (lower is better)
Translates to: CVLGPLDKRPVPRNSFLSDSKSD*EIWHRV
Trigger: CACTCTGTGCCAGATCTCTCAGTCAGACTTGGAGTC...ACTCAGAAATGAATTCCTAGGGACTGGTCTCTTGTCCAGAGGGCCCAGAACACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR CCA 90 bp TGGACCATTGTTTGCATCATACTGAGAAATGACCAAAACCATGTGTTCTGGGCCCCAGCTGCAGGAGAGTaGGTGGGGCTTCCAAGTCCA +
Preference number: 4 (lower is better)
Translates to: WTIVCIILRNDQNHVFWAPAAGE*VGLPSP
Trigger: TGGACTTGGAAGCCCCACCCACTCTCCTGCAGCTGG...GGCCCAGAACACATGGTTTTGGTCATTTCTCAGTATGATGCAAACAATGGTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR TCA 90 bp TGGACCATTGTTTGCATCATACTGAGAAATGACCAAAACCATGTGTTCTGGGCCCAAACGCTGCCTCCTTaGGTGGCCCTCCACTTCTTG +
Preference number: 4 (lower is better)
Translates to: WTIVCIILRNDQNHVFWAQTLPP*VALHFL
Trigger: CAAGAAGTGGAGGGCCACTCAAGGAGGCAGCGTTTG...GGCCCAGAACACATGGTTTTGGTCATTTCTCAGTATGATGCAAACAATGGTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR GCA 90 bp TGGACCATTGTTTGCATCATACTGAGAAATGACCAAAACCATGTGTTCTGGGCCCCTCCTTCCTCACTGTaGACTGTGCAGCCAGCTGCA +
Preference number: 4 (lower is better)
Translates to: WTIVCIILRNDQNHVFWAPPSSL*TVQPAA
Trigger: TGCAGCTGGCTGCACAGTGCACAGTGAGGAAGGAGG...GGCCCAGAACACATGGTTTTGGTCATTTCTCAGTATGATGCAAACAATGGTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR GCA 90 bp TGGACCATTGTTTGCATCATACTGAGAAATGACCAAAACCATGTGTTCTGGGCCAACACCCTCAAACGCTaGCTCCTTGAGTGGCCCTCC +
Preference number: 4 (lower is better)
Translates to: WTIVCIILRNDQNHVFWANTLKR*LLEWPS
Trigger: GGAGGGCCACTCAAGGAGGCAGCGTTTGAGGGTGTT...GGCCCAGAACACATGGTTTTGGTCATTTCTCAGTATGATGCAAACAATGGTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR TCA 90 bp TGTGTTCTGGGCCCTCTGGACAAGAGACCAGTCCCTAGGAATTCATTTCTGAGTGAATGTCAGCCTCCTTaGATAGTGGTGGAAAGAGCT +
Preference number: 4 (lower is better)
Translates to: CVLGPLDKRPVPRNSFLSECQPP*IVVERA
Trigger: AGCTCTTTCCACCACTATTCAAGGAGGCTGACATTC...ACTCAGAAATGAATTCCTAGGGACTGGTCTCTTGTCCAGAGGGCCCAGAACACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR GCA 90 bp TGGACCATTGTTTGCATCATACTGAGAAATGACCAAAACCATGTGTTCTGGGCCGGCTCATGTTGGCTGTaGGGTGCAGAAGATCCTGCA +
Preference number: 4 (lower is better)
Translates to: WTIVCIILRNDQNHVFWAGSCWL*GAEDPA
Trigger: TGCAGGATCTTCTGCACCGCACAGCCAACATGAGCC...GGCCCAGAACACATGGTTTTGGTCATTTCTCAGTATGATGCAAACAATGGTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR TCA 90 bp TGGACCATTGTTTGCATCATACTGAGAAATGACCAAAACCATGTGTTCTGGGCCAGATCTGGCACAGAGTaGTGGTCAGGGACAACAAGG +
Preference number: 4 (lower is better)
Translates to: WTIVCIILRNDQNHVFWARSGTE*WSGTTR
Trigger: CCTTGTTGTCCCTGACCATCACTCTGTGCCAGATCT...GGCCCAGAACACATGGTTTTGGTCATTTCTCAGTATGATGCAAACAATGGTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR GCA 90 bp TGTGTTCTGGGCCCTCTGGACAAGAGACCAGTCCCTAGGAATTCATTTCTGAGTCTGTCCTTTGCCCACTaGAACAAATGTGTTTGCTGT +
Preference number: 4 (lower is better)
Translates to: CVLGPLDKRPVPRNSFLSLSFAH*NKCVCC
Trigger: ACAGCAAACACATTTGTTGCAGTGGGCAAAGGACAG...ACTCAGAAATGAATTCCTAGGGACTGGTCTCTTGTCCAGAGGGCCCAGAACACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR TCA 90 bp TGGACCATTGTTTGCATCATACTGAGAAATGACCAAAACCATGTGTTCTGGGCCGGTACCAAAACAGACTaGCTTGGGCCGTCTTACAGT +
Preference number: 4 (lower is better)
Translates to: WTIVCIILRNDQNHVFWAGTKTD*LGPSYS
Trigger: ACTGTAAGACGGCCCAAGTCAGTCTGTTTTGGTACC...GGCCCAGAACACATGGTTTTGGTCATTTCTCAGTATGATGCAAACAATGGTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR GCA 90 bp TGGACCATTGTTTGCATCATACTGAGAAATGACCAAAACCATGTGTTCTGGGCCATGTTGGCTGTGCGGTaGAGAAGATCCTGCAGAACA +
Preference number: 4 (lower is better)
Translates to: WTIVCIILRNDQNHVFWAMLAVR*RRSCRT
Trigger: TGTTCTGCAGGATCTTCTGCACCGCACAGCCAACAT...GGCCCAGAACACATGGTTTTGGTCATTTCTCAGTATGATGCAAACAATGGTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR TCA 90 bp TGTGTTCTGGGCCCTCTGGACAAGAGACCAGTCCCTAGGAATTCATTTCTGAGTACTAGCATGAGTTTCTaGAGATTTCTCATCTTGCTG +
Preference number: 4 (lower is better)
Translates to: CVLGPLDKRPVPRNSFLSTSMSF*RFLILL
Trigger: CAGCAAGATGAGAAATCTTCAGAAACTCATGCTAGT...ACTCAGAAATGAATTCCTAGGGACTGGTCTCTTGTCCAGAGGGCCCAGAACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR GCA 90 bp TGGACCATTGTTTGCATCATACTGAGAAATGACCAAAACCATGTGTTCTGGGCCACCCTCTCTGTCCTTTaGCCACTGCAACAAATGTGT +
Preference number: 4 (lower is better)
Translates to: WTIVCIILRNDQNHVFWATLSVL*PLQQMC
Trigger: ACACATTTGTTGCAGTGGGCAAAGGACAGAGAGGGT...GGCCCAGAACACATGGTTTTGGTCATTTCTCAGTATGATGCAAACAATGGTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR TCA 90 bp TGGACCATTGTTTGCATCATACTGAGAAATGACCAAAACCATGTGTTCTGGGCCGATGCTGGAGATAGCTaGGTTTGGGGAACAAAGAAA +
Preference number: 4 (lower is better)
Translates to: WTIVCIILRNDQNHVFWADAGDS*VWGTKK
Trigger: TTTCTTTGTTCCCCAAACTCAGCTATCTCCAGCATC...GGCCCAGAACACATGGTTTTGGTCATTTCTCAGTATGATGCAAACAATGGTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR GCA 90 bp TGGACCATTGTTTGCATCATACTGAGAAATGACCAAAACCATGTGTTCTGGGCCTTCATTGGTAGGTTCTaGAGAACAGAGATGGTCAGC +
Preference number: 4 (lower is better)
Translates to: WTIVCIILRNDQNHVFWAFIGRF*RTEMVS
Trigger: GCTGACCATCTCTGTTCTGCAGAACCTACCAATGAA...GGCCCAGAACACATGGTTTTGGTCATTTCTCAGTATGATGCAAACAATGGTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR GCA 90 bp TGGACCATTGTTTGCATCATACTGAGAAATGACCAAAACCATGTGTTCTGGGCCTGGCCCTCCACTTCTTaGTTCTCAGGTATAGTTTCT +
Preference number: 4 (lower is better)
Translates to: WTIVCIILRNDQNHVFWAWPSTS*FSGIVS
Trigger: AGAAACTATACCTGAGAAGCAAGAAGTGGAGGGCCA...GGCCCAGAACACATGGTTTTGGTCATTTCTCAGTATGATGCAAACAATGGTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR GCA 90 bp TGTGTTCTGGGCCCTCTGGACAAGAGACCAGTCCCTAGGAATTCATTTCTGAGTTGCAACAAATGTGTTTaGTGTTTATCTTCATGCCGA +
Preference number: 4 (lower is better)
Translates to: CVLGPLDKRPVPRNSFLSCNKCV*CLSSCR
Trigger: TCGGCATGAAGATAAACAGCAAACACATTTGTTGCA...ACTCAGAAATGAATTCCTAGGGACTGGTCTCTTGTCCAGAGGGCCCAGAACACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR TCA 90 bp TGGACCATTGTTTGCATCATACTGAGAAATGACCAAAACCATGTGTTCTGGGCCAGATGCGTACTAGCATaGGTTTCTGAAGATTTCTCA +
Preference number: 4 (lower is better)
Translates to: WTIVCIILRNDQNHVFWARCVLA*VSEDFS
Trigger: TGAGAAATCTTCAGAAACTCATGCTAGTACGCATCT...GGCCCAGAACACATGGTTTTGGTCATTTCTCAGTATGATGCAAACAATGGTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR GCA 90 bp TGGACCATTGTTTGCATCATACTGAGAAATGACCAAAACCATGTGTTCTGGGCCTGCTGTTTATCTTCATaGCGAGAAGACTTGAAGGAA +
Preference number: 4 (lower is better)
Translates to: WTIVCIILRNDQNHVFWACCLSS*REDLKE
Trigger: TTCCTTCAAGTCTTCTCGGCATGAAGATAAACAGCA...GGCCCAGAACACATGGTTTTGGTCATTTCTCAGTATGATGCAAACAATGGTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR TCA 90 bp TGGACCATTGTTTGCATCATACTGAGAAATGACCAAAACCATGTGTTCTGGGCCCATTCATGTGGTCTCTaGGAAAATAGACATCATCAA +
Preference number: 4 (lower is better)
Translates to: WTIVCIILRNDQNHVFWAHSCGL*ENRHHQ
Trigger: TTGATGATGTCTATTTTCTCAGAGACCACATGAATG...GGCCCAGAACACATGGTTTTGGTCATTTCTCAGTATGATGCAAACAATGGTCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS GCA 90 bp GTAGGTTCTGCAGAACAGAGATGGTCAGCACCTCCTTCCTCACTGTaGACTGTGCAGCCAGCTGCAGGAGAGTGGGTGGGGCTTCCAAGT +
Preference number: 5 (lower is better)
Translates to: VGSAEQRWSAPPSSL*TVQPAAGEWVGLPS
Trigger: ACTTGGAAGCCCCACCCACTCTCCTGCAGCTGGCTGCACAGTGCACAGTGAGGAAGGAGGTGCTGACCATCTCTGTTCTGCAGAACCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS GCA 90 bp CTGGGGCAGGGTACAGTTCCATGGTCAGCTGGCTCATGTTGGCTGTaGGGTGCAGAAGATCCTGCAGAACATCCCTGGAGATGTTATTGT +
Preference number: 5 (lower is better)
Translates to: LGQGTVPWSAGSCWL*GAEDPAEHPWRCYC
Trigger: ACAATAACATCTCCAGGGATGTTCTGCAGGATCTTCTGCACCGCACAGCCAACATGAGCCAGCTGACCATGGAACTGTACCCTGCCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR CAA 90 bp TGTGTTCTGGGCCCTCTGGACAAGAGACCAGTCCCTAGGAATTCATTTCTGAGTGTCAGCTGGCTCATGTaGGCTGTGCGGTGCAGAAGA +
Preference number: 5 (lower is better)
Translates to: CVLGPLDKRPVPRNSFLSVSWLM*AVRCRR
Trigger: TCTTCTGCACCGCACAGCCAACATGAGCCAGCTGAC...ACTCAGAAATGAATTCCTAGGGACTGGTCTCTTGTCCAGAGGGCCCAGAACACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR CAA 90 bp TGTGTTCTGGGCCCTCTGGACAAGAGACCAGTCCCTAGGAATTCATTTCTGAGTTCAAACGCTGCCTCCTaGAGTGGCCCTCCACTTCTT +
Preference number: 5 (lower is better)
Translates to: CVLGPLDKRPVPRNSFLSSNAAS*SGPPLL
Trigger: AAGAAGTGGAGGGCCACTCAAGGAGGCAGCGTTTGA...ACTCAGAAATGAATTCCTAGGGACTGGTCTCTTGTCCAGAGGGCCCAGAACACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS GCA 90 bp CTGAACACCCTCAAACGCTGCCTCCTTGAGTGGCCCTCCACTTCTTaGTTCTCAGGTATAGTTTCTACTAACTGGTCTCCACCCTCTCTT +
Preference number: 5 (lower is better)
Translates to: LNTLKRCLLEWPSTS*FSGIVSTNWSPPSL
Trigger: AAGAGAGGGTGGAGACCAGTTAGTAGAAACTATACCTGAGAAGCAAGAAGTGGAGGGCCACTCAAGGAGGCAGCGTTTGAGGGTGTTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS TCA 90 bp GTGAGACGGGTGCATTTGGTCAAGGCAGGCAGAAGGATCCTGAGGTaGGAGTCCTTCATCCTACAGTCTTCTAATTCTAGAGTCTGCAGA +
Preference number: 5 (lower is better)
Translates to: VRRVHLVKAGRRILR*ESFILQSSNSRVCR
Trigger: TCTGCAGACTCTAGAATTAGAAGACTGTAGGATGAAGGACTCTCACCTCAGGATCCTTCTGCCTGCCTTGACCAAATGCACCCGTCTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR CAA 90 bp TGTGTTCTGGGCCCTCTGGACAAGAGACCAGTCCCTAGGAATTCATTTCTGAGTGTGGCCCTCCACTTCTaGCTTCTCAGGTATAGTTTC +
Preference number: 5 (lower is better)
Translates to: CVLGPLDKRPVPRNSFLSVALHF*LLRYSF
Trigger: GAAACTATACCTGAGAAGCAAGAAGTGGAGGGCCAC...ACTCAGAAATGAATTCCTAGGGACTGGTCTCTTGTCCAGAGGGCCCAGAACACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR CAA 90 bp TGTGTTCTGGGCCCTCTGGACAAGAGACCAGTCCCTAGGAATTCATTTCTGAGTAACCCTCTCTGTCCTTaGCCCACTGCAACAAATGTG +
Preference number: 5 (lower is better)
Translates to: CVLGPLDKRPVPRNSFLSNPLCP*PTATNV
Trigger: CACATTTGTTGCAGTGGGCAAAGGACAGAGAGGGTT...ACTCAGAAATGAATTCCTAGGGACTGGTCTCTTGTCCAGAGGGCCCAGAACACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS CCA 90 bp TTGAAGGAAAGGTCACTGAACACCCTCAAACGCTGCCTCCTTGAGTaGCCCTCCACTTCTTGCTTCTCAGGTATAGTTTCTACTAACTGG +
Preference number: 5 (lower is better)
Translates to: LKERSLNTLKRCLLE*PSTSCFSGIVSTNW
Trigger: CCAGTTAGTAGAAACTATACCTGAGAAGCAAGAAGTGGAGGGCCACTCAAGGAGGCAGCGTTTGAGGGTGTTCAGTGACCTTTCCTTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR CAA 90 bp TGTGTTCTGGGCCCTCTGGACAAGAGACCAGTCCCTAGGAATTCATTTCTGAGTTCATGCCGAGAAGACTaGAAGGAAAGGTCACTGAAC +
Preference number: 5 (lower is better)
Translates to: CVLGPLDKRPVPRNSFLSSCRED*KERSLN
Trigger: GTTCAGTGACCTTTCCTTCAAGTCTTCTCGGCATGA...ACTCAGAAATGAATTCCTAGGGACTGGTCTCTTGTCCAGAGGGCCCAGAACACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS GCA 90 bp TTCCAACTTCTCGCAGCACAGATGCAGGAAACCCTCTCTGTCCTTTaGCCACTGCAACAAATGTGTTTGCTGTTTATCTTCATGCCGAGA +
Preference number: 5 (lower is better)
Translates to: FQLLAAQMQETLSVL*PLQQMCLLFIFMPR
Trigger: TCTCGGCATGAAGATAAACAGCAAACACATTTGTTGCAGTGGGCAAAGGACAGAGAGGGTTTCCTGCATCTGTGCTGCGAGAAGTTGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS CCA 90 bp CGATACTTCCGTTTCAGCCATGTGCCAACTCCCTCCAGTATAGCCTaGAAAGTCTCCAAGTTGGGTTTATCTATCAGCAACCCAACAAGA +
Preference number: 5 (lower is better)
Translates to: RYFRFSHVPTPSSIA*KVSKLGLSISNPTR
Trigger: TCTTGTTGGGTTGCTGATAGATAAACCCAACTTGGAGACTTTCCAGGCTATACTGGAGGGAGTTGGCACATGGCTGAAACGGAAGTATCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR CAA 90 bp TGTGTTCTGGGCCCTCTGGACAAGAGACCAGTCCCTAGGAATTCATTTCTGAGTAACACCTTCTTGACCTaGGACACTTCTAATGCTCCA +
Preference number: 5 (lower is better)
Translates to: CVLGPLDKRPVPRNSFLSNTFLT*DTSNAP
Trigger: TGGAGCATTAGAAGTGTCCAAGGTCAAGAAGGTGTT...ACTCAGAAATGAATTCCTAGGGACTGGTCTCTTGTCCAGAGGGCCCAGAACACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR CAA 90 bp TGTGTTCTGGGCCCTCTGGACAAGAGACCAGTCCCTAGGAATTCATTTCTGAGTCTGCAACAAATGTGTTaGCTGTTTATCTTCATGCCG +
Preference number: 5 (lower is better)
Translates to: CVLGPLDKRPVPRNSFLSLQQMC*LFIFMP
Trigger: CGGCATGAAGATAAACAGCAAACACATTTGTTGCAG...ACTCAGAAATGAATTCCTAGGGACTGGTCTCTTGTCCAGAGGGCCCAGAACACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR CAA 90 bp TGTGTTCTGGGCCCTCTGGACAAGAGACCAGTCCCTAGGAATTCATTTCTGAGTAGCTTTAACACCTTCTaGACCTTGGACACTTCTAAT +
Preference number: 5 (lower is better)
Translates to: CVLGPLDKRPVPRNSFLSSFNTF*TLDTSN
Trigger: ATTAGAAGTGTCCAAGGTCAAGAAGGTGTTAAAGCT...ACTCAGAAATGAATTCCTAGGGACTGGTCTCTTGTCCAGAGGGCCCAGAACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR CAA 90 bp TGTGTTCTGGGCCCTCTGGACAAGAGACCAGTCCCTAGGAATTCATTTCTGAGTTGCAAGGTACAAGTTTaGTCAATTTGGACAGATTCC +
Preference number: 5 (lower is better)
Translates to: CVLGPLDKRPVPRNSFLSCKVQV*SIWTDS
Trigger: GGAATCTGTCCAAATTGACAAAACTTGTACCTTGCA...ACTCAGAAATGAATTCCTAGGGACTGGTCTCTTGTCCAGAGGGCCCAGAACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS TCA 90 bp ACAACGTGTATCACAGTCATAACAGGAATAGGTACCAAAACAGACTaGCTTGGGCCGTCTTACAGTTATGAGTGTGTTCATGAGCTCAGC +
Preference number: 5 (lower is better)
Translates to: TTCITVITGIGTKTD*LGPSYSYECVHELS
Trigger: GCTGAGCTCATGAACACACTCATAACTGTAAGACGGCCCAAGTCAGTCTGTTTTGGTACCTATTCCTGTTATGACTGTGATACACGTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS-3UTR CAA 90 bp TGGACCATTGTTTGCATCATACTGAGAAATGACCAAAACCATGTGTTCTGGGCCTGGAAAGTCTCCAAGTaGGGTTTATCTATCAGCAAC +
Preference number: 5 (lower is better)
Translates to: WTIVCIILRNDQNHVFWAWKVSK*GLSISN
Trigger: GTTGCTGATAGATAAACCCAACTTGGAGACTTTCCA...GGCCCAGAACACATGGTTTTGGTCATTTCTCAGTATGATGCAAACAATGGTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS GCA 72 bp GCAGAACAGAGATGGTCAGCACCTCCTTCCTCACTGTaGACTGTGCAGCCAGCTGCAGGAGAGTGGGTGGGG +
Preference number: 6 (lower is better)
Translates to: AEQRWSAPPSSL*TVQPAAGEWVG
Trigger: CCCCACCCACTCTCCTGCAGCTGGCTGCACAGTGCACAGTGAGGAAGGAGGTGCTGACCATCTCTGTTCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS CAA 72 bp GGGGCAGGGTACAGTTCCATGGTCAGCTGGCTCATGTaGGCTGTGCGGTGCAGAAGATCCTGCAGAACATCC +
Preference number: 6 (lower is better)
Translates to: GAGYSSMVSWLM*AVRCRRSCRTS
Trigger: GGATGTTCTGCAGGATCTTCTGCACCGCACAGCCAACATGAGCCAGCTGACCATGGAACTGTACCCTGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS CAA 90 bp ACCTCTACTGGGGCAGGGTACAGTTCCATGGTCAGCTGGCTCATGTaGGCTGTGCGGTGCAGAAGATCCTGCAGAACATCCCTGGAGATG +
Preference number: 6 (lower is better)
Translates to: TSTGAGYSSMVSWLM*AVRCRRSCRTSLEM
Trigger: CATCTCCAGGGATGTTCTGCAGGATCTTCTGCACCGCACAGCCAACATGAGCCAGCTGACCATGGAACTGTACCCTGCCCCAGTAGAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS CCA 72 bp AGGTCACTGAACACCCTCAAACGCTGCCTCCTTGAGTaGCCCTCCACTTCTTGCTTCTCAGGTATAGTTTCT +
Preference number: 6 (lower is better)
Translates to: RSLNTLKRCLLE*PSTSCFSGIVS
Trigger: AGAAACTATACCTGAGAAGCAAGAAGTGGAGGGCCACTCAAGGAGGCAGCGTTTGAGGGTGTTCAGTGACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS TCA 72 bp CAGAAGTCATGGTGTCCATTCCTCAAGTCAACCACTTaGAGCTTCCCCATCCTGGGACGATACTTCCGTTTC +
Preference number: 6 (lower is better)
Translates to: QKSWCPFLKSTT*SFPILGRYFRF
Trigger: GAAACGGAAGTATCGTCCCAGGATGGGGAAGCTTCAAGTGGTTGACTTGAGGAATGGACACCATGACTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS TCA 72 bp GACGGGTGCATTTGGTCAAGGCAGGCAGAAGGATCCTaGGGTGAGAGTCCTTCATCCTACAGTCTTCTAATT +
Preference number: 6 (lower is better)
Translates to: DGCIWSRQAEGS*GESPSSYSLLI
Trigger: AATTAGAAGACTGTAGGATGAAGGACTCTCACCTCAGGATCCTTCTGCCTGCCTTGACCAAATGCACCCGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS GCA 72 bp TCTAATGCTCCAATTTCCAACTTCTCGCAGCACAGATaGAGGAAACCCTCTCTGTCCTTTGCCCACTGCAAC +
Preference number: 6 (lower is better)
Translates to: SNAPISNFSQHR*RKPSLSFAHCN
Trigger: GTTGCAGTGGGCAAAGGACAGAGAGGGTTTCCTGCATCTGTGCTGCGAGAAGTTGGAAATTGGAGCATTAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS CAA 72 bp CCAGAAGTCATGGTGTCCATTCCTCAAGTCAACCACTaGAAGCTTCCCCATCCTGGGACGATACTTCCGTTT +
Preference number: 6 (lower is better)
Translates to: PEVMVSIPQVNH*KLPHPGTILPF
Trigger: AAACGGAAGTATCGTCCCAGGATGGGGAAGCTTCAAGTGGTTGACTTGAGGAATGGACACCATGACTTCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS GCA 72 bp CTCGCAGCACAGATGCAGGAAACCCTCTCTGTCCTTTaGCCACTGCAACAAATGTGTTTGCTGTTTATCTTC +
Preference number: 6 (lower is better)
Translates to: LAAQMQETLSVL*PLQQMCLLFIF
Trigger: GAAGATAAACAGCAAACACATTTGTTGCAGTGGGCAAAGGACAGAGAGGGTTTCCTGCATCTGTGCTGCGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS CCA 72 bp CGTTTCAGCCATGTGCCAACTCCCTCCAGTATAGCCTaGAAAGTCTCCAAGTTGGGTTTATCTATCAGCAAC +
Preference number: 6 (lower is better)
Translates to: RFSHVPTPSSIA*KVSKLGLSISN
Trigger: GTTGCTGATAGATAAACCCAACTTGGAGACTTTCCAGGCTATACTGGAGGGAGTTGGCACATGGCTGAAACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS CAA 90 bp TTTCCAACTTCTCGCAGCACAGATGCAGGAAACCCTCTCTGTCCTTaGCCCACTGCAACAAATGTGTTTGCTGTTTATCTTCATGCCGAG +
Preference number: 6 (lower is better)
Translates to: FPTSRSTDAGNPLCP*PTATNVFAVYLHAE
Trigger: CTCGGCATGAAGATAAACAGCAAACACATTTGTTGCAGTGGGCAAAGGACAGAGAGGGTTTCCTGCATCTGTGCTGCGAGAAGTTGGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS CAA 90 bp CACTGCAACAAATGTGTTTGCTGTTTATCTTCATGCCGAGAAGACTaGAAGGAAAGGTCACTGAACACCCTCAAACGCTGCCTCCTTGAG +
Preference number: 6 (lower is better)
Translates to: HCNKCVCCLSSCRED*KERSLNTLKRCLLE
Trigger: CTCAAGGAGGCAGCGTTTGAGGGTGTTCAGTGACCTTTCCTTCAAGTCTTCTCGGCATGAAGATAAACAGCAAACACATTTGTTGCAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS TCA 72 bp GTGCATTTGGTCAAGGCAGGCAGAAGGATCCTGAGGTaGGAGTCCTTCATCCTACAGTCTTCTAATTCTAGA +
Preference number: 6 (lower is better)
Translates to: VHLVKAGRRILR*ESFILQSSNSR
Trigger: TCTAGAATTAGAAGACTGTAGGATGAAGGACTCTCACCTCAGGATCCTTCTGCCTGCCTTGACCAAATGCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS CAA 72 bp CCAACTCCCTCCAGTATAGCCTGGAAAGTCTCCAAGTaGGGTTTATCTATCAGCAACCCAACAAGAAGGCTA +
Preference number: 6 (lower is better)
Translates to: PTPSSIAWKVSK*GLSISNPTRRL
Trigger: TAGCCTTCTTGTTGGGTTGCTGATAGATAAACCCAACTTGGAGACTTTCCAGGCTATACTGGAGGGAGTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS CAA 72 bp TCTCGCAGCACAGATGCAGGAAACCCTCTCTGTCCTTaGCCCACTGCAACAAATGTGTTTGCTGTTTATCTT +
Preference number: 6 (lower is better)
Translates to: SRSTDAGNPLCP*PTATNVFAVYL
Trigger: AAGATAAACAGCAAACACATTTGTTGCAGTGGGCAAAGGACAGAGAGGGTTTCCTGCATCTGTGCTGCGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS CAA 72 bp ACCCTCTCTGTCCTTTGCCCACTGCAACAAATGTGTTaGCTGTTTATCTTCATGCCGAGAAGACTTGAAGGA +
Preference number: 6 (lower is better)
Translates to: TLSVLCPLQQMC*LFIFMPRRLEG
Trigger: TCCTTCAAGTCTTCTCGGCATGAAGATAAACAGCAAACACATTTGTTGCAGTGGGCAAAGGACAGAGAGGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS CAA 90 bp TCCAACTCCTTGATGAACTCTGGCTGTAAAAGCTTTAACACCTTCTaGACCTTGGACACTTCTAATGCTCCAATTTCCAACTTCTCGCAG +
Preference number: 6 (lower is better)
Translates to: SNSLMNSGCKSFNTF*TLDTSNAPISNFSQ
Trigger: CTGCGAGAAGTTGGAAATTGGAGCATTAGAAGTGTCCAAGGTCAAGAAGGTGTTAAAGCTTTTACAGCCAGAGTTCATCAAGGAGTTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS CAA 72 bp TTGGACAGATTCCCCACTGTATTCAGTTCCAACTCCTaGATGAACTCTGGCTGTAAAAGCTTTAACACCTTC +
Preference number: 6 (lower is better)
Translates to: LDRFPTVFSSNS*MNSGCKSFNTF
Trigger: GAAGGTGTTAAAGCTTTTACAGCCAGAGTTCATCAAGGAGTTGGAACTGAATACAGTGGGGAATCTGTCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS CAA 72 bp CTCATCTTGCTGATGCAAGGTACAAGTTTTGTCAATTaGGACAGATTCCCCACTGTATTCAGTTCCAACTCC +
Preference number: 6 (lower is better)
Translates to: LILLMQGTSFVN*DRFPTVFSSNS
Trigger: GGAGTTGGAACTGAATACAGTGGGGAATCTGTCCAAATTGACAAAACTTGTACCTTGCATCAGCAAGATGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS CAA 90 bp ACCAGGAGTTTAATCATCTTTGCTTTTCTCAGAATGTCAGCCTCCTaGAATAGTGGTGGAAAGAGCTTCATTGGTAGGTTCTGCAGAACA +
Preference number: 6 (lower is better)
Translates to: TRSLIIFAFLRMSAS*NSGGKSFIGRFCRT
Trigger: TGTTCTGCAGAACCTACCAATGAAGCTCTTTCCACCACTATTCAAGGAGGCTGACATTCTGAGAAAAGCAAAGATGATTAAACTCCTGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS TCA 72 bp ATCACAGTCATAACAGGAATAGGTACCAAAACAGACTaGCTTGGGCCGTCTTACAGTTATGAGTGTGTTCAT +
Preference number: 6 (lower is better)
Translates to: ITVITGIGTKTD*LGPSYSYECVH
Trigger: ATGAACACACTCATAACTGTAAGACGGCCCAAGTCAGTCTGTTTTGGTACCTATTCCTGTTATGACTGTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2
CDS TCA 72 bp GTATGTCTTCCAAAGATGCGTACTAGCATGAGTTTCTaGAGATTTCTCATCTTGCTGATGCAAGGTACAAGT +
Preference number: 6 (lower is better)
Translates to: VCLPKMRTSMSF*RFLILLMQGTS
Trigger: ACTTGTACCTTGCATCAGCAAGATGAGAAATCTTCAGAAACTCATGCTAGTACGCATCTTTGGAAGACATAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105751.2