Pregenerated sensors for PRAMEL28 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078510Ensembl transcript IDs: ENSMUST00000105763.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | TCCAATACATTGATCAATGTCAGAAGACATGTGTTCAGGAACCCCTaGATCATAGACATGTCCTTAGACTTTCATTTCTCAGTTACCAAA | + |
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Preference number: 2 (lower is better) Translates to: SNTLINVRRHVFRNP*IIDMSLDFHFSVTK Trigger: TTTGGTAACTGAGAAATGAAAGTCTAAGGACATGTCTATGATCAAGGGGTTCCTGAACACATGTCTTCTGACATTGATCAATGTATTGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR CCA 90 bp | ACAGTCAGCCCCTTTGTCTCCAATACATTGATCAATGTCAGAAGACATGTGTTCGGCTGCCTTGAAGAGTaGTGGGAACAACTCCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: TVSPFVSNTLINVRRHVFGCLEE*WEQLPG Trigger: CCCAGGGAGTTGTTCCCACCACTCTTCAAGGCAGCC...GAACACATGTCTTCTGACATTGATCAATGTATTGGAGACAAAGGGGCTGACTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR GCA 90 bp | CAGGAACCCCTTGATCATAGACATGTCCTTAGACTTTCATTTCTCAGTTACCAAAGGGATGTTCATCAGTaGCCCCACAGGGAGGCAAGG | + |
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Preference number: 4 (lower is better) Translates to: QEPLDHRHVLRLSFLSYQRDVHQ*PHREAR Trigger: CCTTGCCTCCCTGTGGGGGCACTGATGAACATCCCT...TTGGTAACTGAGAAATGAAAGTCTAAGGACATGTCTATGATCAAGGGGTTCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR CCA 90 bp | TCTAGATGTCACAGTCAGCCCCTTTGTCTCCAATACATTGATCAATGTCAGAAGCCAAGCTCAGGAGTGTaGGTGGAGCCTGGAAGTTCA | + |
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Preference number: 4 (lower is better) Translates to: SRCHSQPLCLQYIDQCQKPSSGV*VEPGSS Trigger: TGAACTTCCAGGCTCCACCCACACTCCTGAGCTTGG...CTTCTGACATTGATCAATGTATTGGAGACAAAGGGGCTGACTGTGACATCTAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR CCA 90 bp | TTTGTCTCCAATACATTGATCAATGTCAGAAGACATGTGTTCAGGAACCCCTTGGTGGGAACAACTCCCTaGGCAGCTCCTGCAGAGCAT | + |
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Preference number: 4 (lower is better) Translates to: FVSNTLINVRRHVFRNPLVGTTP*AAPAEH Trigger: ATGCTCTGCAGGAGCTGCCCAGGGAGTTGTTCCCAC...CAAGGGGTTCCTGAACACATGTCTTCTGACATTGATCAATGTATTGGAGACAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR TCA 90 bp | CTCTCTAGATGTCACAGTCAGCCCCTTTGTCTCCAATACATTGATCAATGTCAGCTTAGTGCATATCTATaGGGGCGTGTTGCTTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: LSRCHSQPLCLQYIDQCQLSAYL*GRVAFC Trigger: GCAGAAAGCAACACGCCCTCATAGATATGCACTAAG...CTGACATTGATCAATGTATTGGAGACAAAGGGGCTGACTGTGACATCTAGAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR TCA 90 bp | ACAGTCAGCCCCTTTGTCTCCAATACATTGATCAATGTCAGAAGACATGTGTTCTTGACCGAGATGAGCTaGGAGCACTTATTCAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: TVSPFVSNTLINVRRHVFLTEMS*EHLFRA Trigger: TGCCCTGAATAAGTGCTCTCAGCTCATCTCGGTCAA...GAACACATGTCTTCTGACATTGATCAATGTATTGGAGACAAAGGGGCTGACTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR GCA 90 bp | CTGTATGATTCCATTAGTCATTTCTCCTCACACGTCCACTCTCTAGATGTCACACAGATAGAGTGGGGCTaGCTAACAGTGCAAAGTGTG | + |
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Preference number: 4 (lower is better) Translates to: LYDSISHFSSHVHSLDVTQIEWG*LTVQSV Trigger: CACACTTTGCACTGTTAGGCAGCCCCACTCTATCTG...TGTGACATCTAGAGAGTGGACGTGTGAGGAGAAATGACTAATGGAATCATACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR TCA 90 bp | CTCTCTAGATGTCACAGTCAGCCCCTTTGTCTCCAATACATTGATCAATGTCAGTTGAGTTTGGGGAACTaGGAAATGACCTTGATGACG | + |
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Preference number: 4 (lower is better) Translates to: LSRCHSQPLCLQYIDQCQLSLGN*EMTLMT Trigger: CGTCATCAAGGTCATTTCTCAGTTCCCCAAACTCAA...CTGACATTGATCAATGTATTGGAGACAAAGGGGCTGACTGTGACATCTAGAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR TCA 90 bp | CTTTGTCTCCAATACATTGATCAATGTCAGAAGACATGTGTTCAGGAACCCCTTCATTCATGTGGCCAGTaGGAAAGTAGAGGCCAGTCA | + |
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Preference number: 4 (lower is better) Translates to: LCLQYIDQCQKTCVQEPLHSCGQ*ESRGQS Trigger: TGACTGGCCTCTACTTTCTCACTGGCCACATGAATG...AAGGGGTTCCTGAACACATGTCTTCTGACATTGATCAATGTATTGGAGACAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR GCA 90 bp | CACAGTCAGCCCCTTTGTCTCCAATACATTGATCAATGTCAGAAGACATGTGTTACCTCTTCTCTCCTGTaGCCACTGCAAGAAGTAAGT | + |
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Preference number: 4 (lower is better) Translates to: HSQPLCLQYIDQCQKTCVTSSLL*PLQEVS Trigger: ACTTACTTCTTGCAGTGGGCACAGGAGAGAAGAGGT...AACACATGTCTTCTGACATTGATCAATGTATTGGAGACAAAGGGGCTGACTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR TCA 90 bp | CACAGTCAGCCCCTTTGTCTCCAATACATTGATCAATGTCAGAAGACATGTGTTCAAAGATTCTTCATCTaGCCAAGGCAAGGTGTGAAG | + |
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Preference number: 4 (lower is better) Translates to: HSQPLCLQYIDQCQKTCVQRFFI*PRQGVK Trigger: CTTCACACCTTGCCTTGGTCAGATGAAGAATCTTTG...AACACATGTCTTCTGACATTGATCAATGTATTGGAGACAAAGGGGCTGACTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR TCA 90 bp | CTCCAATACATTGATCAATGTCAGAAGACATGTGTTCAGGAACCCCTTGATCATGATGCTGGAGACTGTTaGGTTTGGGGAACTGAGAAA | + |
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Preference number: 4 (lower is better) Translates to: LQYIDQCQKTCVQEPLDHDAGDC*VWGTEK Trigger: TTTCTCAGTTCCCCAAACTCAACAGTCTCCAGCATC...ATGATCAAGGGGTTCCTGAACACATGTCTTCTGACATTGATCAATGTATTGGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR GCA 90 bp | AACCCCTTGATCATAGACATGTCCTTAGACTTTCATTTCTCAGTTACCAAACGATTCATACAGCACAGGTaGAGGAAACCTCTTCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: NPLIIDMSLDFHFSVTKRFIQHR*RKPLLS Trigger: GGAGAGAAGAGGTTTCCTGCACCTGTGCTGTATGAA...TCGTTTGGTAACTGAGAAATGAAAGTCTAAGGACATGTCTATGATCAAGGGGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR GCA 90 bp | TTTGTCTCCAATACATTGATCAATGTCAGAAGACATGTGTTCAGGAACCCCTTGCTGACTGTGAGTACTTaGAGAGAGCAATTGACAGGA | + |
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Preference number: 4 (lower is better) Translates to: FVSNTLINVRRHVFRNPLLTVST*REQLTG Trigger: TCCTGTCAATTGCTCTCTGCAAGTACTCACAGTCAG...CAAGGGGTTCCTGAACACATGTCTTCTGACATTGATCAATGTATTGGAGACAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR GCA 90 bp | CACAGTCAGCCCCTTTGTCTCCAATACATTGATCAATGTCAGAAGACATGTGTTCTGGACAAATCTCTCTaGTCTAAGAACAAAACCGGT | + |
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Preference number: 4 (lower is better) Translates to: HSQPLCLQYIDQCQKTCVLDKSL*SKNKTG Trigger: ACCGGTTTTGTTCTTAGAGCAGAGAGATTTGTCCAG...AACACATGTCTTCTGACATTGATCAATGTATTGGAGACAAAGGGGCTGACTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR GCA 90 bp | GAACCCCTTGATCATAGACATGTCCTTAGACTTTCATTTCTCAGTTACCAAACGAAATTTCCTGTCATCTaGTTGTCTACACCATCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: EPLDHRHVLRLSFLSYQTKFPVI*LSTPSS Trigger: GCTGGATGGTGTAGACAAGCAGATGACAGGAAATTT...CGTTTGGTAACTGAGAAATGAAAGTCTAAGGACATGTCTATGATCAAGGGGTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR GCA 90 bp | CCCCTTTGTCTCCAATACATTGATCAATGTCAGAAGACATGTGTTCAGGAACCCACAAGACTCAGATCATaGAAAATGATACCTGCCAAA | + |
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Preference number: 4 (lower is better) Translates to: PLCLQYIDQCQKTCVQEPTRLRS*KMIPAK Trigger: TTTGGCAGGTATCATTTTGCATGATCTGAGTCTTGT...GGGTTCCTGAACACATGTCTTCTGACATTGATCAATGTATTGGAGACAAAGGGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR GCA 90 bp | CTCTCTAGATGTCACAGTCAGCCCCTTTGTCTCCAATACATTGATCAATGTCAGAGACCATATGTACAGTaGTGTGAACATATAAGGCAT | + |
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Preference number: 4 (lower is better) Translates to: LSRCHSQPLCLQYIDQCQRPYVQ*CEHIRH Trigger: ATGCCTTATATGTTCACAGCACTGTACATATGGTCT...CTGACATTGATCAATGTATTGGAGACAAAGGGGCTGACTGTGACATCTAGAGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR CCA 90 bp | GAACCCCTTGATCATAGACATGTCCTTAGACTTTCATTTCTCAGTTACCAAACGAGCTCAGAAGAAAGCTaGACAAATCTCTCTGCTCTA | + |
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Preference number: 4 (lower is better) Translates to: EPLDHRHVLRLSFLSYQTSSEES*TNLSAL Trigger: TAGAGCAGAGAGATTTGTCCAGCTTTCTTCTGAGCT...CGTTTGGTAACTGAGAAATGAAAGTCTAAGGACATGTCTATGATCAAGGGGTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR TCA 90 bp | CTTGATCATAGACATGTCCTTAGACTTTCATTTCTCAGTTACCAAACGAATCCTTGCAAAGTGTGTTCATaGGCTCAGAAGAAAGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: LDHRHVLRLSFLSYQTNPCKVCS*AQKKAG Trigger: TCCAGCTTTCTTCTGAGCTCATGAACACACTTTGCA...AGGATTCGTTTGGTAACTGAGAAATGAAAGTCTAAGGACATGTCTATGATCAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR CCA 90 bp | CTCTCTAGATGTCACAGTCAGCCCCTTTGTCTCCAATACATTGATCAATGTCAGAAGCTTCTGATTTCTTaGGGAAAAATTTCCTGTCAT | + |
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Preference number: 4 (lower is better) Translates to: LSRCHSQPLCLQYIDQCQKLLIS*GKISCH Trigger: ATGACAGGAAATTTTTCCCCAAGAAATCAGAAGCTT...CTGACATTGATCAATGTATTGGAGACAAAGGGGCTGACTGTGACATCTAGAGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR CCA 90 bp | TTTGTCTCCAATACATTGATCAATGTCAGAAGACATGTGTTCAGGAACCCCTTGGTGAAGAGTTTCTCATaGACTAGTGTTAGATGGAGT | + |
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Preference number: 4 (lower is better) Translates to: FVSNTLINVRRHVFRNPLVKSFS*TSVRWS Trigger: ACTCCATCTAACACTAGTCCATGAGAAACTCTTCAC...CAAGGGGTTCCTGAACACATGTCTTCTGACATTGATCAATGTATTGGAGACAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR TCA 90 bp | CTTGATCATAGACATGTCCTTAGACTTTCATTTCTCAGTTACCAAACGAATCCTTCAGATCATGCAAAATaGTACCTGCCAAATGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: LDHRHVLRLSFLSYQTNPSDHAK*YLPNAG Trigger: ACCTGCATTTGGCAGGTATCATTTTGCATGATCTGA...AGGATTCGTTTGGTAACTGAGAAATGAAAGTCTAAGGACATGTCTATGATCAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| 3UTR CAA 72 bp | TTGATCAATGTCAGAAGACATGTGTTCAGGAACCCCTaGATCATAGACATGTCCTTAGACTTTCATTTCTCA | + |
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Preference number: 4 (lower is better) Translates to: LINVRRHVFRNP*IIDMSLDFHFS Trigger: TGAGAAATGAAAGTCTAAGGACATGTCTATGATCAAGGGGTTCCTGAACACATGTCTTCTGACATTGATCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR GCA 90 bp | TTTGTCTCCAATACATTGATCAATGTCAGAAGACATGTGTTCAGGAACCCCTTGATTCCAACTCCTCAATaGAATATGGTTGGAAAATCT | + |
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Preference number: 4 (lower is better) Translates to: FVSNTLINVRRHVFRNPLIPTPQ*NMVGKS Trigger: AGATTTTCCAACCATATTGCATTGAGGAGTTGGAAT...CAAGGGGTTCCTGAACACATGTCTTCTGACATTGATCAATGTATTGGAGACAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR GCA 90 bp | CTTGATCATAGACATGTCCTTAGACTTTCATTTCTCAGTTACCAAACGAATCCTATGCAAAATGATACCTaGCAAATGCAGGTGTTTGAG | + |
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Preference number: 4 (lower is better) Translates to: LDHRHVLRLSFLSYQTNPMQNDT*QMQVFE Trigger: CTCAAACACCTGCATTTGGCAGGTATCATTTTGCAT...AGGATTCGTTTGGTAACTGAGAAATGAAAGTCTAAGGACATGTCTATGATCAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR CCA 90 bp | TTGATCATAGACATGTCCTTAGACTTTCATTTCTCAGTTACCAAACGAATCCTCTCGTTAGGACAGATATaGAGATGTCATTGTCACAGA | + |
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Preference number: 4 (lower is better) Translates to: LIIDMSLDFHFSVTKRILSLGQI*RCHCHR Trigger: TCTGTGACAATGACATCTCCATATCTGTCCTAACGA...GAGGATTCGTTTGGTAACTGAGAAATGAAAGTCTAAGGACATGTCTATGATCAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS GCA 90 bp | GACTCTGACACTGGGCAAAGGACTCCATGTCTGACTGTGAGTACTTaGAGAGAGCAATTGACAGGAACTCCAGCGGAGTCTTCAGACACC | + |
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Preference number: 5 (lower is better) Translates to: DSDTGQRTPCLTVST*REQLTGTPAESSDT Trigger: GGTGTCTGAAGACTCCGCTGGAGTTCCTGTCAATTGCTCTCTGCAAGTACTCACAGTCAGACATGGAGTCCTTTGCCCAGTGTCAGAGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS GCA 90 bp | GCAAAGTGTGTTCATGAGCTCAGAAGAAAGCTGGACAAATCTCTCTaGTCTAAGAACAAAACCGGTTTCATAGCACTCCAGAGGAGCAGG | + |
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Preference number: 5 (lower is better) Translates to: AKCVHELRRKLDKSL*SKNKTGFIALQRSR Trigger: CCTGCTCCTCTGGAGTGCTATGAAACCGGTTTTGTTCTTAGAGCAGAGAGATTTGTCCAGCTTTCTTCTGAGCTCATGAACACACTTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS TCA 90 bp | TTCTCATGGACTAGTGTTAGATGGAGTTTACAAAGATTCTTCATCTaGCCAAGGCAAGGTGTGAAGCATGCCAGTGTGGACAGAGTCCAG | + |
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Preference number: 5 (lower is better) Translates to: FSWTSVRWSLQRFFI*PRQGVKHASVDRVQ Trigger: CTGGACTCTGTCCACACTGGCATGCTTCACACCTTGCCTTGGTCAGATGAAGAATCTTTGTAAACTCCATCTAACACTAGTCCATGAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS TCA 90 bp | GTCTCCAGACCATATGTACAGTGCTGTGAACATATAAGGCATAACTaGGAGGCAAAACAGATAGAGTGGGGCTGCCTAACAGTGCAAAGT | + |
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Preference number: 5 (lower is better) Translates to: VSRPYVQCCEHIRHN*EAKQIEWGCLTVQS Trigger: ACTTTGCACTGTTAGGCAGCCCCACTCTATCTGTTTTGCCTCTCAGTTATGCCTTATATGTTCACAGCACTGTACATATGGTCTGGAGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS TCA 90 bp | TTAGATGGAGTTTACAAAGATTCTTCATCTGACCAAGGCAAGGTGTaGAGCATGCCAGTGTGGACAGAGTCCAGCCTGTATTCAATTCCA | + |
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Preference number: 5 (lower is better) Translates to: LDGVYKDSSSDQGKV*SMPVWTESSLYSIP Trigger: TGGAATTGAATACAGGCTGGACTCTGTCCACACTGGCATGCTTCACACCTTGCCTTGGTCAGATGAAGAATCTTTGTAAACTCCATCTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR CAA 90 bp | CTCCAATACATTGATCAATGTCAGAAGACATGTGTTCAGGAACCCCTTGATCATTTTCCTGTCATCTGCTaGTCTACACCATCCAGCACA | + |
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Preference number: 5 (lower is better) Translates to: LQYIDQCQKTCVQEPLDHFPVIC*STPSST Trigger: TGTGCTGGATGGTGTAGACAAGCAGATGACAGGAAA...ATGATCAAGGGGTTCCTGAACACATGTCTTCTGACATTGATCAATGTATTGGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR CAA 90 bp | CAGGAACCCCTTGATCATAGACATGTCCTTAGACTTTCATTTCTCAGTTACCAATCTCAGGTCCAGCACTaGAAGCTTCTGATTTCTTGG | + |
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Preference number: 5 (lower is better) Translates to: QEPLDHRHVLRLSFLSYQSQVQH*KLLISW Trigger: CCAAGAAATCAGAAGCTTCAAGTGCTGGACCTGAGA...TTGGTAACTGAGAAATGAAAGTCTAAGGACATGTCTATGATCAAGGGGTTCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS CCA 90 bp | GGACAGAGTCCAGCCTGTATTCAATTCCAACTCCTCAATGCAATATaGTTGGAAAATCTGCAAGATCTTCCTGACAGTGTGAATAGTCAA | + |
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Preference number: 5 (lower is better) Translates to: GQSPACIQFQLLNAI*LENLQDLPDSVNSQ Trigger: TTGACTATTCACACTGTCAGGAAGATCTTGCAGATTTTCCAACCATATTGCATTGAGGAGTTGGAATTGAATACAGGCTGGACTCTGTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR CAA 90 bp | ACAGTCAGCCCCTTTGTCTCCAATACATTGATCAATGTCAGAAGACATGTGTTCGAAGCTTCTGATTTCTaGGGGAAAAATTTCCTGTCA | + |
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Preference number: 5 (lower is better) Translates to: TVSPFVSNTLINVRRHVFEASDF*GKNFLS Trigger: TGACAGGAAATTTTTCCCCAAGAAATCAGAAGCTTC...GAACACATGTCTTCTGACATTGATCAATGTATTGGAGACAAAGGGGCTGACTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR CAA 90 bp | ATAGACATGTCCTTAGACTTTCATTTCTCAGTTACCAAACGAATCCTCCTCCTAATCTATGAGGGCGTGTaGCTTTCTGCTTTTGACACA | + |
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Preference number: 5 (lower is better) Translates to: IDMSLDFHFSVTKRILLLIYEGV*LSAFDT Trigger: TGTGTCAAAAGCAGAAAGCAACACGCCCTCATAGAT...TAGGAGGAGGATTCGTTTGGTAACTGAGAAATGAAAGTCTAAGGACATGTCTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR CAA 90 bp | CTCCAATACATTGATCAATGTCAGAAGACATGTGTTCAGGAACCCCTTGATCATCTCAATGCAATATGGTaGGAAAATCTGCAAGATCTT | + |
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Preference number: 5 (lower is better) Translates to: LQYIDQCQKTCVQEPLDHLNAIW*ENLQDL Trigger: AAGATCTTGCAGATTTTCCAACCATATTGCATTGAG...ATGATCAAGGGGTTCCTGAACACATGTCTTCTGACATTGATCAATGTATTGGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS-3UTR CAA 90 bp | AACCCCTTGATCATAGACATGTCCTTAGACTTTCATTTCTCAGTTACCAAACGAAGGTCTTCAGAGTGTTaGCAACGTTTTCTAGGAAAA | + |
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Preference number: 5 (lower is better) Translates to: NPLIIDMSLDFHFSVTKRRSSEC*QRFLGK Trigger: TTTTCCTAGAAAACGTTGCAAACACTCTGAAGACCT...TCGTTTGGTAACTGAGAAATGAAAGTCTAAGGACATGTCTATGATCAAGGGGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS GCA 72 bp | CCTGTCATCTGCTTGTCTACACCATCCAGCACAGCTTaGAATACTGTCATGTCAGGGATGTTCATCAGTGCC | + |
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Preference number: 6 (lower is better) Translates to: PVICLSTPSSTA*NTVMSGMFISA Trigger: GGCACTGATGAACATCCCTGACATGACAGTATTGCAAGCTGTGCTGGATGGTGTAGACAAGCAGATGACAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS CAA 90 bp | GGAAAAATTTCCTGTCATCTGCTTGTCTACACCATCCAGCACAGCTaGCAATACTGTCATGTCAGGGATGTTCATCAGTGCCCCCACAGG | + |
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Preference number: 6 (lower is better) Translates to: GKISCHLLVYTIQHS*QYCHVRDVHQCPHR Trigger: CCTGTGGGGGCACTGATGAACATCCCTGACATGACAGTATTGCAAGCTGTGCTGGATGGTGTAGACAAGCAGATGACAGGAAATTTTTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS CAA 72 bp | TCCTGTCATCTGCTTGTCTACACCATCCAGCACAGCTaGCAATACTGTCATGTCAGGGATGTTCATCAGTGC | + |
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Preference number: 6 (lower is better) Translates to: SCHLLVYTIQHS*QYCHVRDVHQC Trigger: GCACTGATGAACATCCCTGACATGACAGTATTGCAAGCTGTGCTGGATGGTGTAGACAAGCAGATGACAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS CAA 72 bp | TTAAACGTCTCCTTAGTGCATATCTATGAGGGCGTGTaGCTTTCTGCTTTTGACACACTGTCTCTGCTGAGC | + |
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Preference number: 6 (lower is better) Translates to: LNVSLVHIYEGV*LSAFDTLSLLS Trigger: GCTCAGCAGAGACAGTGTGTCAAAAGCAGAAAGCAACACGCCCTCATAGATATGCACTAAGGAGACGTTTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS TCA 72 bp | ACTAGTGTTAGATGGAGTTTACAAAGATTCTTCATCTaGCCAAGGCAAGGTGTGAAGCATGCCAGTGTGGAC | + |
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Preference number: 6 (lower is better) Translates to: TSVRWSLQRFFI*PRQGVKHASVD Trigger: GTCCACACTGGCATGCTTCACACCTTGCCTTGGTCAGATGAAGAATCTTTGTAAACTCCATCTAACACTAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS GCA 72 bp | AAGAGGCACAAGACTCAGATCATGCAAAATGATACCTaGCAAATGCAGGTGTTTGAGATGATGGAGACTCTG | + |
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Preference number: 6 (lower is better) Translates to: KRHKTQIMQNDT*QMQVFEMMETL Trigger: CAGAGTCTCCATCATCTCAAACACCTGCATTTGGCAGGTATCATTTTGCATGATCTGAGTCTTGTGCCTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS CAA 72 bp | CCAGAAGTGATGGTGCACATTTCTCAGGTCCAGCACTaGAAGCTTCTGATTTCTTGGGGAAAAATTTCCTGT | + |
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Preference number: 6 (lower is better) Translates to: PEVMVHISQVQH*KLLISWGKISC Trigger: ACAGGAAATTTTTCCCCAAGAAATCAGAAGCTTCAAGTGCTGGACCTGAGAAATGTGCACCATCACTTCTGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS CCA 72 bp | ATTTCTCAGGTCCAGCACTTGAAGCTTCTGATTTCTTaGGGAAAAATTTCCTGTCATCTGCTTGTCTACACC | + |
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Preference number: 6 (lower is better) Translates to: ISQVQHLKLLIS*GKISCHLLVYT Trigger: GGTGTAGACAAGCAGATGACAGGAAATTTTTCCCCAAGAAATCAGAAGCTTCAAGTGCTGGACCTGAGAAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS CCA 72 bp | ACAGTGCAAAGTGTGTTCATGAGCTCAGAAGAAAGCTaGACAAATCTCTCTGCTCTAAGAACAAAACCGGTT | + |
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Preference number: 6 (lower is better) Translates to: TVQSVFMSSEES*TNLSALRTKPV Trigger: AACCGGTTTTGTTCTTAGAGCAGAGAGATTTGTCCAGCTTTCTTCTGAGCTCATGAACACACTTTGCACTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS TCA 72 bp | GATTTTCCTCTAGATCAAACTGAAGGGGTAGGTCAGTaGCCACCTTTAAACGTCTCCTTAGTGCATATCTAT | + |
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Preference number: 6 (lower is better) Translates to: DFPLDQTEGVGQ*PPLNVSLVHIY Trigger: ATAGATATGCACTAAGGAGACGTTTAAAGGTGGTCACTGACCTACCCCTTCAGTTTGATCTAGAGGAAAATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS TCA 72 bp | TATGGTTGGAAAATCTGCAAGATCTTCCTGACAGTGTaGATAGTCAATCCCCTAATCTGCATCTTCATACAG | + |
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Preference number: 6 (lower is better) Translates to: YGWKICKIFLTV*IVNPLICIFIQ Trigger: CTGTATGAAGATGCAGATTAGGGGATTGACTATTCACACTGTCAGGAAGATCTTGCAGATTTTCCAACCATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS CAA 72 bp | GCCTGTATTCAATTCCAACTCCTCAATGCAATATGGTaGGAAAATCTGCAAGATCTTCCTGACAGTGTGAAT | + |
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Preference number: 6 (lower is better) Translates to: ACIQFQLLNAIW*ENLQDLPDSVN Trigger: ATTCACACTGTCAGGAAGATCTTGCAGATTTTCCAACCATATTGCATTGAGGAGTTGGAATTGAATACAGGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS TCA 72 bp | TCTTCTCCTGTATGTCTGTTGATGTACGTAGAAAAGTaGAGAGTTTCTCATGGACTAGTGTTAGATGGAGTT | + |
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Preference number: 6 (lower is better) Translates to: SSPVCLLMYVEK*RVSHGLVLDGV Trigger: AACTCCATCTAACACTAGTCCATGAGAAACTCTTCACTTTTCTACGTACATCAACAGACATACAGGAGAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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| CDS CCA 72 bp | TCTGTTGATGTACGTAGAAAAGTGAAGAGTTTCTCATaGACTAGTGTTAGATGGAGTTTACAAAGATTCTTC | + |
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Preference number: 6 (lower is better) Translates to: SVDVRRKVKSFS*TSVRWSLQRFF Trigger: GAAGAATCTTTGTAAACTCCATCTAACACTAGTCCATGAGAAACTCTTCACTTTTCTACGTACATCAACAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105763.2 |
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