Pregenerated sensors for PRAMEL27 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029451Ensembl transcript IDs: ENSMUST00000094522.8, ENSMUST00000105768.2, ENSMUST00000139747.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGAAGATCTTGCCTTTTAATTGTGTATCTCAAACCTTTAGGTGGTTaGCATATCCATGCTCCTTTAAGCAAGGGAAATTCAATTAAGATT | + |
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Preference number: 1 (lower is better) Translates to: GRSCLLIVYLKPLGG*HIHAPLSKGNSIKI Trigger: AATCTTAATTGAATTTCCCTTGCTTAAAGGAGCATGGATATGTCAACCACCTAAAGGTTTGAGATACACAATTAAAAGGCAAGATCTTCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| 3UTR-3UTR GCA 90 bp | CTTGGGCTGTCGTTTGGCCCTGGGTATATCCAGGACTTCAGGACAAAATTGTTCGTCACCTTGGATGTGTaGTGTAGAAGTTGTTTCAGG | + |
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Preference number: 2 (lower is better) Translates to: LGLSFGPGYIQDFRTKLFVTLDV*CRSCFR Trigger: CCTGAAACAACTTCTACAGCACACATCCAAGGTGAC...GAACAATTTTGTCCTGAAGTCCTGGATATACCCAGGGCCAAACGACAGCCCAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105768.2 |
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| 3UTR-3UTR CCA 90 bp | CATAGCTCAGCTGGGTCACCTTGGATGTGTGCTGTAGAAGTTGTTTCAGGGACAGAGAGTTCATTTTCCTaGAAATTGACATCTGTGAGG | + |
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Preference number: 2 (lower is better) Translates to: HSSAGSPWMCAVEVVSGTESSFS*KLTSVR Trigger: CCTCACAGATGTCAATTTCCAGGAAAATGAACTCTC...TGTCCCTGAAACAACTTCTACAGCACACATCCAAGGTGACCCAGCTGAGCTATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105768.2 |
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| 3UTR-3UTR TCA 90 bp | GCAGATGCTACATTTATTCACCAGCTCAGAGGAAGATCTTGCCTTTTAATTGTGAAACCTTTAGGTGGTTaGCATATCCATGCTCCTTTA | + |
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Preference number: 2 (lower is better) Translates to: ADATFIHQLRGRSCLLIVKPLGG*HIHAPL Trigger: TAAAGGAGCATGGATATGTCAACCACCTAAAGGTTT...CACAATTAAAAGGCAAGATCTTCCTCTGAGCTGGTGAATAAATGTAGCATCTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| 3UTR CAA 90 bp | ACTTTTAGCAGATGCTACATTTATTCACCAGCTCAGAGGAAGATCTaGCCTTTTAATTGTGTATCTCAAACCTTTAGGTGGTTGACATAT | + |
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Preference number: 2 (lower is better) Translates to: TFSRCYIYSPAQRKI*PFNCVSQTFRWLTY Trigger: ATATGTCAACCACCTAAAGGTTTGAGATACACAATTAAAAGGCAAGATCTTCCTCTGAGCTGGTGAATAAATGTAGCATCTGCTAAAAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| 3UTR-3UTR GCA 90 bp | ACAATATCCTCATGGAAGTGTGCCTCTATTGTAACACACTCAAACTACAATAATGCTAGAGAAGAAGAGTaGTTGAAACTTTTAGCAGAT | + |
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Preference number: 2 (lower is better) Translates to: TISSWKCASIVTHSNYNNAREEE*LKLLAD Trigger: ATCTGCTAAAAGTTTCAAGCACTCTTCTTCTCTAGC...ATTATTGTAGTTTGAGTGTGTTACAATAGAGGCACACTTCCATGAGGATATTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| 3UTR CCA 72 bp | GGCCGGGATACATCTCATAGCTCAGCTGGGTCACCTTaGATGTGTGCTGTAGAAGTTGTTTCAGGGACAGCA | + |
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Preference number: 3 (lower is better) Translates to: GRDTSHSSAGSP*MCAVEVVSGTA Trigger: TGCTGTCCCTGAAACAACTTCTACAGCACACATCCAAGGTGACCCAGCTGAGCTATGAGATGTATCCCGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105768.2 |
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| 3UTR TCA 72 bp | TGCCTTTTAATTGTGTATCTCAAACCTTTAGGTGGTTaGCATATCCATGCTCCTTTAAGCAAGGGAAATTCA | + |
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Preference number: 3 (lower is better) Translates to: CLLIVYLKPLGG*HIHAPLSKGNS Trigger: TGAATTTCCCTTGCTTAAAGGAGCATGGATATGTCAACCACCTAAAGGTTTGAGATACACAATTAAAAGGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| 3UTR GCA 72 bp | ACACACTCAAACTACAATAATGCTAGAGAAGAAGAGTaGTTGAAACTTTTAGCAGATGCTACATTTATTCAC | + |
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Preference number: 3 (lower is better) Translates to: THSNYNNAREEE*LKLLADATFIH Trigger: GTGAATAAATGTAGCATCTGCTAAAAGTTTCAAGCACTCTTCTTCTCTAGCATTATTGTAGTTTGAGTGTGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS-3UTR TCA 90 bp | GGGTCACCTTGGATGTGTGCTGTAGAAGTTGTTTCAGGGACAGCAGAGAGAGTTTATTGGGCAGGTCCTTaGGAGAAGAAATGGCTAAAG | + |
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Preference number: 4 (lower is better) Translates to: GSPWMCAVEVVSGTAERVYWAGP*EKKWLK Trigger: CTTTAGCCATTTCTTCTCTCAAGGACCTGCCCAATA...AACTCTCTCTGCTGTCCCTGAAACAACTTCTACAGCACACATCCAAGGTGACCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105768.2 |
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| CDS-3UTR TCA 90 bp | TCAGCTGGGTCACCTTGGATGTGTGCTGTAGAAGTTGTTTCAGGGACAGCAGAGGATGTTTCTGTTCCATaGACTCTGATAAACCTTCAA | + |
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Preference number: 4 (lower is better) Translates to: SAGSPWMCAVEVVSGTAEDVSVP*TLINLQ Trigger: TTGAAGGTTTATCAGAGTTCATGGAACAGAAACATC...CTCTGCTGTCCCTGAAACAACTTCTACAGCACACATCCAAGGTGACCCAGCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105768.2 |
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| CDS-3UTR CCA 90 bp | CAGAGAGAGTTCATTTTCCTGGAAATTGACATCTGTGAGGTGGGAACATTGACTCTTCAGCAGGGTGGGTaGGGAGTAGACATCAATTGT | + |
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Preference number: 4 (lower is better) Translates to: QREFIFLEIDICEVGTLTLQQGG*GVDINC Trigger: ACAATTGATGTCTACTCCCCACCCACCCTGCTGAAG...AGTCAATGTTCCCACCTCACAGATGTCAATTTCCAGGAAAATGAACTCTCTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105768.2 |
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| CDS-3UTR CCA 90 bp | GCCTCTATTGTAACACACTCAAACTACAATAATGCTAGAGAAGAAGAGTGCTTGGCTGTCGTTTGGCCCTaGGTATATCCAGGACTTCAG | + |
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Preference number: 4 (lower is better) Translates to: ASIVTHSNYNNAREEECLAVVWP*VYPGLQ Trigger: CTGAAGTCCTGGATATACCCAGGGCCAAACGACAGC...CAAGCACTCTTCTTCTCTAGCATTATTGTAGTTTGAGTGTGTTACAATAGAGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS-3UTR CCA 90 bp | CAGAGGAAGATCTTGCCTTTTAATTGTGTATCTCAAACCTTTAGGTGGTTGACACTTCAGCAGGGTGGGTaGGGAGTAGACATCAATTGT | + |
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Preference number: 4 (lower is better) Translates to: QRKILPFNCVSQTFRWLTLQQGG*GVDINC Trigger: ACAATTGATGTCTACTCCCCACCCACCCTGCTGAAG...TGTCAACCACCTAAAGGTTTGAGATACACAATTAAAAGGCAAGATCTTCCTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS-3UTR GCA 90 bp | GAAACTTTTAGCAGATGCTACATTTATTCACCAGCTCAGAGGAAGATCTTGCCTGTCACCTTGGATGTGTaGTGTAGAAGTTGTTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: ETFSRCYIYSPAQRKILPVTLDV*CRSCFR Trigger: CCTGAAACAACTTCTACAGCACACATCCAAGGTGAC...AGGCAAGATCTTCCTCTGAGCTGGTGAATAAATGTAGCATCTGCTAAAAGTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS-3UTR CCA 90 bp | CCTTGGATGTGTGCTGTAGAAGTTGTTTCAGGGACAGCAGAGAGAGTTCATTTTATTCCATCCAAACCATaGTTTTTATCCCTCCAACTG | + |
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Preference number: 4 (lower is better) Translates to: PWMCAVEVVSGTAERVHFIPSKP*FLSLQL Trigger: CAGTTGGAGGGATAAAAACCATGGTTTGGATGGAAT...AAAATGAACTCTCTCTGCTGTCCCTGAAACAACTTCTACAGCACACATCCAAGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105768.2 |
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| CDS-3UTR TCA 90 bp | CCTTGGATGTGTGCTGTAGAAGTTGTTTCAGGGACAGCAGAGAGAGTTCATTTTAATTGTTTCTTCTTCTaGAGAGTCATCTTGATCTGG | + |
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Preference number: 4 (lower is better) Translates to: PWMCAVEVVSGTAERVHFNCFFF*RVILIW Trigger: CCAGATCAAGATGACTCTTCAGAAGAAGAAACAATT...AAAATGAACTCTCTCTGCTGTCCCTGAAACAACTTCTACAGCACACATCCAAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105768.2 |
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| CDS-3UTR TCA 90 bp | TCATCAATCCCCAATACTAAGGAAGCTTCCATTTCTCTGTTCTACAATCAACGTAGGGAATCTGTGATGTaGTCAAGTGTGAGTTCAAGA | + |
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Preference number: 4 (lower is better) Translates to: SSIPNTKEASISLFYNQRRESVM*SSVSSR Trigger: TCTTGAACTCACACTTGATCACATCACAGATTCCCT...ACGTTGATTGTAGAACAGAGAAATGGAAGCTTCCTTAGTATTGGGGATTGATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS-3UTR TCA 90 bp | ACTTTTAGCAGATGCTACATTTATTCACCAGCTCAGAGGAAGATCTTGCCTTTTGGAAATGTGGGAAGCTaGGAAACCAATGTGATCATT | + |
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Preference number: 4 (lower is better) Translates to: TFSRCYIYSPAQRKILPFGNVGS*ETNVII Trigger: AATGATCACATTGGTTTCTCAGCTTCCCACATTTCC...AAAAGGCAAGATCTTCCTCTGAGCTGGTGAATAAATGTAGCATCTGCTAAAAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS-3UTR CCA 90 bp | AAGATTTCATCAATCCCCAATACTAAGGAAGCTTCCATTTCTCTGTTCTACAATGGAGACAGGGAAATGTaGGAAGCTGAGAAACCAATG | + |
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Preference number: 4 (lower is better) Translates to: KISSIPNTKEASISLFYNGDREM*EAEKPM Trigger: CATTGGTTTCTCAGCTTCCCACATTTCCCTGTCTCC...ATTGTAGAACAGAGAAATGGAAGCTTCCTTAGTATTGGGGATTGATGAAATCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS-3UTR CCA 90 bp | TCCCCAATACTAAGGAAGCTTCCATTTCTCTGTTCTACAATCAACGTTACAGGATTTATACAGAGTTTCTaGAGACAGGGAAATGTGGGA | + |
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Preference number: 4 (lower is better) Translates to: SPILRKLPFLCSTINVTGFIQSF*RQGNVG Trigger: TCCCACATTTCCCTGTCTCCAGAAACTCTGTATAAA...TCCTGTAACGTTGATTGTAGAACAGAGAAATGGAAGCTTCCTTAGTATTGGGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS-3UTR TCA 90 bp | AAGATTTCATCAATCCCCAATACTAAGGAAGCTTCCATTTCTCTGTTCTACAATTATTGGGCAGGTCCTTaGGAGAAGAAATGGCTAAAG | + |
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Preference number: 4 (lower is better) Translates to: KISSIPNTKEASISLFYNYWAGP*EKKWLK Trigger: CTTTAGCCATTTCTTCTCTCAAGGACCTGCCCAATA...ATTGTAGAACAGAGAAATGGAAGCTTCCTTAGTATTGGGGATTGATGAAATCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS-3UTR TCA 90 bp | CCTTTTAATTGTGTATCTCAAACCTTTAGGTGGTTGACATATCCATGCTCCTTTTGCTATAGAAAGGTATaGAAAGGGCCACTCAGGTAT | + |
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Preference number: 4 (lower is better) Translates to: PFNCVSQTFRWLTYPCSFCYRKV*KGPLRY Trigger: ATACCTGAGTGGCCCTTTTCATACCTTTCTATAGCA...AAAGGAGCATGGATATGTCAACCACCTAAAGGTTTGAGATACACAATTAAAAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS-3UTR CCA 90 bp | CAGAGGAAGATCTTGCCTTTTAATTGTGTATCTCAAACCTTTAGGTGGTTGACAGAATCTTTTCTTTGCTaGGTCCACTCCAACAAGTAT | + |
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Preference number: 4 (lower is better) Translates to: QRKILPFNCVSQTFRWLTESFLC*VHSNKY Trigger: ATACTTGTTGGAGTGGACCCAGCAAAGAAAAGATTC...TGTCAACCACCTAAAGGTTTGAGATACACAATTAAAAGGCAAGATCTTCCTCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS-3UTR TCA 90 bp | TCATCAATCCCCAATACTAAGGAAGCTTCCATTTCTCTGTTCTACAATCAACGTGATGTTTCTGTTCCATaGACTCTGATAAACCTTCAA | + |
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Preference number: 4 (lower is better) Translates to: SSIPNTKEASISLFYNQRDVSVP*TLINLQ Trigger: TTGAAGGTTTATCAGAGTTCATGGAACAGAAACATC...ACGTTGATTGTAGAACAGAGAAATGGAAGCTTCCTTAGTATTGGGGATTGATGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS-3UTR CCA 90 bp | CCTTTTAATTGTGTATCTCAAACCTTTAGGTGGTTGACATATCCATGCTCCTTTATTCCATCCAAACCATaGTTTTTATCCCTCCAACTG | + |
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Preference number: 4 (lower is better) Translates to: PFNCVSQTFRWLTYPCSFIPSKP*FLSLQL Trigger: CAGTTGGAGGGATAAAAACCATGGTTTGGATGGAAT...AAAGGAGCATGGATATGTCAACCACCTAAAGGTTTGAGATACACAATTAAAAGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS-3UTR CCA 90 bp | GCAGATGCTACATTTATTCACCAGCTCAGAGGAAGATCTTGCCTTTTAATTGTGTACAGAATAGATGAATaGAATCTTTTCTTTGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: ADATFIHQLRGRSCLLIVYRIDE*NLFFAG Trigger: CCCAGCAAAGAAAAGATTCCATTCATCTATTCTGTA...CACAATTAAAAGGCAAGATCTTCCTCTGAGCTGGTGAATAAATGTAGCATCTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS-3UTR CCA 90 bp | GCAGATGCTACATTTATTCACCAGCTCAGAGGAAGATCTTGCCTTTTAATTGTGAGTTTTCTATCACTGTaGCTTTGGTTAAGCTTTGAA | + |
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Preference number: 4 (lower is better) Translates to: ADATFIHQLRGRSCLLIVSFLSL*LWLSFE Trigger: TTCAAAGCTTAACCAAAGCCACAGTGATAGAAAACT...CACAATTAAAAGGCAAGATCTTCCTCTGAGCTGGTGAATAAATGTAGCATCTGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS-3UTR CCA 90 bp | CCTTTTAATTGTGTATCTCAAACCTTTAGGTGGTTGACATATCCATGCTCCTTTGAGAGTTCATTTTCCTaGAAATTGACATCTGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: PFNCVSQTFRWLTYPCSFESSFS*KLTSVR Trigger: CCTCACAGATGTCAATTTCCAGGAAAATGAACTCTC...AAAGGAGCATGGATATGTCAACCACCTAAAGGTTTGAGATACACAATTAAAAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS-3UTR CCA 90 bp | TCCCCAATACTAAGGAAGCTTCCATTTCTCTGTTCTACAATCAACGTTACAGGACCACACTTAGAACATTaGGTTGTAACAAAGTTGATA | + |
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Preference number: 4 (lower is better) Translates to: SPILRKLPFLCSTINVTGPHLEH*VVTKLI Trigger: TATCAACTTTGTTACAACCCAATGTTCTAAGTGTGG...TCCTGTAACGTTGATTGTAGAACAGAGAAATGGAAGCTTCCTTAGTATTGGGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS-3UTR TCA 90 bp | TCAATTAAGATTTCATCAATCCCCAATACTAAGGAAGCTTCCATTTCTCTGTTCGTTACTGATGCAAAATaGTACCAATGGCTTCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: SIKISSIPNTKEASISLFVTDAK*YQWLLQ Trigger: CTGAAGAAGCCATTGGTATCATTTTGCATCAGTAAC...GAACAGAGAAATGGAAGCTTCCTTAGTATTGGGGATTGATGAAATCTTAATTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS-3UTR CCA 90 bp | AGATTTCATCAATCCCCAATACTAAGGAAGCTTCCATTTCTCTGTTCTACAATCCTATCACTGTGGCTTTaGTTAAGCTTTGAATTACCA | + |
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Preference number: 4 (lower is better) Translates to: RFHQSPILRKLPFLCSTILSLWL*LSFELP Trigger: TGGTAATTCAAAGCTTAACCAAAGCCACAGTGATAG...GATTGTAGAACAGAGAAATGGAAGCTTCCTTAGTATTGGGGATTGATGAAATCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS-3UTR TCA 90 bp | TCAATTAAGATTTCATCAATCCCCAATACTAAGGAAGCTTCCATTTCTCTGTTCAATTGTTTCTTCTTCTaGAGAGTCATCTTGATCTGG | + |
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Preference number: 4 (lower is better) Translates to: SIKISSIPNTKEASISLFNCFFF*RVILIW Trigger: CCAGATCAAGATGACTCTTCAGAAGAAGAAACAATT...GAACAGAGAAATGGAAGCTTCCTTAGTATTGGGGATTGATGAAATCTTAATTGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS CCA 90 bp | AAGCCTCCTCTCTCAGTAGCCTGTGTATTGCCAGCTTCAGCAGGGTaGGTGGGGAGTAGACATCAATTGTTTCTTCTTCTGAAGAGTCAT | + |
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Preference number: 5 (lower is better) Translates to: KPPLSVACVLPASAG*VGSRHQLFLLLKSH Trigger: ATGACTCTTCAGAAGAAGAAACAATTGATGTCTACTCCCCACCCACCCTGCTGAAGCTGGCAATACACAGGCTACTGAGAGAGGAGGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094522.8 ENSMUST00000105768.2 |
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| CDS TCA 90 bp | GCCACTCAGGTATCATGGCCTTCAAGATCTTTGTATAACCAAAAATaGAGGCCTCCTCAAACAACACTGGGAACAGCATATTGGGCAGGT | + |
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Preference number: 5 (lower is better) Translates to: ATQVSWPSRSLYNQK*RPPQTTLGTAYWAG Trigger: ACCTGCCCAATATGCTGTTCCCAGTGTTGTTTGAGGAGGCCTTCATTTTTGGTTATACAAAGATCTTGAAGGCCATGATACCTGAGTGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000094522.8 ENSMUST00000105768.2 |
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| CDS-3UTR CAA 90 bp | TGGAAGTGTGCCTCTATTGTAACACACTCAAACTACAATAATGCTAGAGAAGAATCCTTGGGCTGTCGTTaGGCCCTGGGTATATCCAGG | + |
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Preference number: 5 (lower is better) Translates to: WKCASIVTHSNYNNAREESLGCR*ALGISR Trigger: CCTGGATATACCCAGGGCCAAACGACAGCCCAAGGA...TTCTTCTCTAGCATTATTGTAGTTTGAGTGTGTTACAATAGAGGCACACTTCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS TCA 90 bp | AATAGGGCAGGTAATCCAAGTCTGATTGTGAGAGTTCACAGTTACTaGTGCAAAATGATACCAATGGCTTCTTCAGGCACCCGAGGAATT | + |
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Preference number: 5 (lower is better) Translates to: NRAGNPSLIVRVHSY*CKMIPMASSGTRGI Trigger: AATTCCTCGGGTGCCTGAAGAAGCCATTGGTATCATTTTGCATCAGTAACTGTGAACTCTCACAATCAGACTTGGATTACCTGCCCTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS-3UTR CAA 90 bp | CAGAGAGAGTTCATTTTCCTGGAAATTGACATCTGTGAGGTGGGAACATTGACTGGGAGTAGACATCAATaGTTTCTTCTTCTGAAGAGT | + |
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Preference number: 5 (lower is better) Translates to: QREFIFLEIDICEVGTLTGSRHQ*FLLLKS Trigger: ACTCTTCAGAAGAAGAAACAATTGATGTCTACTCCC...AGTCAATGTTCCCACCTCACAGATGTCAATTTCCAGGAAAATGAACTCTCTCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105768.2 |
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| CDS-3UTR CAA 90 bp | GCAGATGCTACATTTATTCACCAGCTCAGAGGAAGATCTTGCCTTTTAATTGTGTCATTTTCCTGGAAATaGACATCTGTGAGGTGGGAA | + |
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Preference number: 5 (lower is better) Translates to: ADATFIHQLRGRSCLLIVSFSWK*TSVRWE Trigger: TTCCCACCTCACAGATGTCAATTTCCAGGAAAATGA...CACAATTAAAAGGCAAGATCTTCCTCTGAGCTGGTGAATAAATGTAGCATCTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS-3UTR CAA 90 bp | GAAGAGTGCTTGAAACTTTTAGCAGATGCTACATTTATTCACCAGCTCAGAGGAGGGAGTAGACATCAATaGTTTCTTCTTCTGAAGAGT | + |
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Preference number: 5 (lower is better) Translates to: EECLKLLADATFIHQLRGGSRHQ*FLLLKS Trigger: ACTCTTCAGAAGAAGAAACAATTGATGTCTACTCCC...TCCTCTGAGCTGGTGAATAAATGTAGCATCTGCTAAAAGTTTCAAGCACTCTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS CAA 72 bp | AAATGGCTAAAGCCTCCTCTCTCAGTAGCCTGTGTATaGCCAGCTTCAGCAGGGTGGGTGGGGAGTAGACAT | + |
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Preference number: 6 (lower is better) Translates to: KWLKPPLSVACV*PASAGWVGSRH Trigger: ATGTCTACTCCCCACCCACCCTGCTGAAGCTGGCAATACACAGGCTACTGAGAGAGGAGGCTTTAGCCATTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094522.8 ENSMUST00000105768.2 |
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| CDS CAA 90 bp | TGTGTATTGCCAGCTTCAGCAGGGTGGGTGGGGAGTAGACATCAATaGTTTCTTCTTCTGAAGAGTCATCTTGATCTGGACACTGCTGAC | + |
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Preference number: 6 (lower is better) Translates to: CVLPASAGWVGSRHQ*FLLLKSHLDLDTAD Trigger: GTCAGCAGTGTCCAGATCAAGATGACTCTTCAGAAGAAGAAACAATTGATGTCTACTCCCCACCCACCCTGCTGAAGCTGGCAATACACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094522.8 ENSMUST00000105768.2 |
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| CDS CAA 72 bp | TCAAACAACACTGGGAACAGCATATTGGGCAGGTCCTaGAGAGAAGAAATGGCTAAAGCCTCCTCTCTCAGT | + |
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Preference number: 6 (lower is better) Translates to: SNNTGNSILGRS*REEMAKASSLS Trigger: ACTGAGAGAGGAGGCTTTAGCCATTTCTTCTCTCAAGGACCTGCCCAATATGCTGTTCCCAGTGTTGTTTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000094522.8 ENSMUST00000105768.2 |
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| CDS TCA 72 bp | GGTGGGTGGGGAGTAGACATCAATTGTTTCTTCTTCTaGAGAGTCATCTTGATCTGGACACTGCTGACAGAT | + |
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Preference number: 6 (lower is better) Translates to: GGWGVDINCFFF*RVILIWTLLTD Trigger: ATCTGTCAGCAGTGTCCAGATCAAGATGACTCTTCAGAAGAAGAAACAATTGATGTCTACTCCCCACCCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000094522.8 ENSMUST00000105768.2 |
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| CDS CAA 72 bp | TGGGTTGTAACAAAGTTGATATCCTTGGGCTGTCGTTaGGCCCTGGGTATATCCAGGACTTCAGGACAAAAT | + |
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Preference number: 6 (lower is better) Translates to: WVVTKLISLGCR*ALGISRTSGQN Trigger: ATTTTGTCCTGAAGTCCTGGATATACCCAGGGCCAAACGACAGCCCAAGGATATCAACTTTGTTACAACCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS CAA 72 bp | CACTTAGAACATTGGGTTGTAACAAAGTTGATATCCTaGGGCTGTCGTTTGGCCCTGGGTATATCCAGGACT | + |
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Preference number: 6 (lower is better) Translates to: HLEHWVVTKLIS*GCRLALGISRT Trigger: AGTCCTGGATATACCCAGGGCCAAACGACAGCCCAAGGATATCAACTTTGTTACAACCCAATGTTCTAAGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS CAA 90 bp | ATATCTAGTCCCTCAAGAACAGCCTTCAAACTCTCCAGGTTGCAGTaGTCTATCAGCACTGCTATAGAAAGGTATGAAAAGGGCCACTCA | + |
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Preference number: 6 (lower is better) Translates to: ISSPSRTAFKLSRLQ*SISTAIERYEKGHS Trigger: TGAGTGGCCCTTTTCATACCTTTCTATAGCAGTGCTGATAGACAACTGCAACCTGGAGAGTTTGAAGGCTGTTCTTGAGGGACTAGATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094522.8 ENSMUST00000105768.2 ENSMUST00000139747.2 |
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| CDS TCA 72 bp | GTTGCAGTTGTCTATCAGCACTGCTATAGAAAGGTATaGAAAGGGCCACTCAGGTATCATGGCCTTCAAGAT | + |
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Preference number: 6 (lower is better) Translates to: VAVVYQHCYRKV*KGPLRYHGLQD Trigger: ATCTTGAAGGCCATGATACCTGAGTGGCCCTTTTCATACCTTTCTATAGCAGTGCTGATAGACAACTGCAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094522.8 ENSMUST00000105768.2 ENSMUST00000139747.2 |
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| CDS CCA 72 bp | TGTATAACCAAAAATGAAGGCCTCCTCAAACAACACTaGGAACAGCATATTGGGCAGGTCCTTGAGAGAAGA | + |
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Preference number: 6 (lower is better) Translates to: CITKNEGLLKQH*EQHIGQVLERR Trigger: TCTTCTCTCAAGGACCTGCCCAATATGCTGTTCCCAGTGTTGTTTGAGGAGGCCTTCATTTTTGGTTATACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000094522.8 ENSMUST00000105768.2 |
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| CDS CCA 72 bp | ACTTCATGGGATCCAGGCCGTATTCCATCCAAACCATaGTTTTTATCCCTCCAACTGATCTCTTTGAGTTTG | + |
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Preference number: 6 (lower is better) Translates to: TSWDPGRIPSKP*FLSLQLISLSL Trigger: CAAACTCAAAGAGATCAGTTGGAGGGATAAAAACCATGGTTTGGATGGAATACGGCCTGGATCCCATGAAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000094522.8 ENSMUST00000105768.2 ENSMUST00000139747.2 |
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| CDS CAA 72 bp | TCTAGTCCCTCAAGAACAGCCTTCAAACTCTCCAGGTaGCAGTTGTCTATCAGCACTGCTATAGAAAGGTAT | + |
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Preference number: 6 (lower is better) Translates to: SSPSRTAFKLSR*QLSISTAIERY Trigger: ATACCTTTCTATAGCAGTGCTGATAGACAACTGCAACCTGGAGAGTTTGAAGGCTGTTCTTGAGGGACTAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000094522.8 ENSMUST00000105768.2 ENSMUST00000139747.2 |
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| CDS CAA 90 bp | AGAAGTATATCTAGTCCCTCAAGAACAGCCTTCAAACTCTCCAGGTaGCAGTTGTCTATCAGCACTGCTATAGAAAGGTATGAAAAGGGC | + |
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Preference number: 6 (lower is better) Translates to: RSISSPSRTAFKLSR*QLSISTAIERYEKG Trigger: GCCCTTTTCATACCTTTCTATAGCAGTGCTGATAGACAACTGCAACCTGGAGAGTTTGAAGGCTGTTCTTGAGGGACTAGATATACTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000094522.8 ENSMUST00000105768.2 ENSMUST00000139747.2 |
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| CDS CAA 90 bp | TATATACCACACTTAGAACATTGGGTTGTAACAAAGTTGATATCCTaGGGCTGTCGTTTGGCCCTGGGTATATCCAGGACTTCAGGACAA | + |
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Preference number: 6 (lower is better) Translates to: YIPHLEHWVVTKLIS*GCRLALGISRTSGQ Trigger: TTGTCCTGAAGTCCTGGATATACCCAGGGCCAAACGACAGCCCAAGGATATCAACTTTGTTACAACCCAATGTTCTAAGTGTGGTATATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS CAA 72 bp | TATATACCACACTTAGAACATTGGGTTGTAACAAAGTaGATATCCTTGGGCTGTCGTTTGGCCCTGGGTATA | + |
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Preference number: 6 (lower is better) Translates to: YIPHLEHWVVTK*ISLGCRLALGI Trigger: TATACCCAGGGCCAAACGACAGCCCAAGGATATCAACTTTGTTACAACCCAATGTTCTAAGTGTGGTATATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS TCA 72 bp | GTATCATGGCCTTCAAGATCTTTGTATAACCAAAAATaGAGGCCTCCTCAAACAACACTGGGAACAGCATAT | + |
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Preference number: 6 (lower is better) Translates to: VSWPSRSLYNQK*RPPQTTLGTAY Trigger: ATATGCTGTTCCCAGTGTTGTTTGAGGAGGCCTTCATTTTTGGTTATACAAAGATCTTGAAGGCCATGATAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000094522.8 ENSMUST00000105768.2 |
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| CDS TCA 72 bp | GCTCCAGCTCTGGTATACAATCTGCATTTACAATTTTaGAGTTTTCTATCACTGTGGCTTTGGTTAAGCTTT | + |
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Preference number: 6 (lower is better) Translates to: APALVYNLHLQF*SFLSLWLWLSF Trigger: AAAGCTTAACCAAAGCCACAGTGATAGAAAACTTCAAAATTGTAAATGCAGATTGTATACCAGAGCTGGAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS CAA 72 bp | AGCTCCAGCTCTGGTATACAATCTGCATTTACAATTTaGAAGTTTTCTATCACTGTGGCTTTGGTTAAGCTT | + |
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Preference number: 6 (lower is better) Translates to: SSSSGIQSAFTI*KFSITVALVKL Trigger: AAGCTTAACCAAAGCCACAGTGATAGAAAACTTCAAAATTGTAAATGCAGATTGTATACCAGAGCTGGAGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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| CDS CAA 72 bp | CAGATCATAAACATAATATATACCACACTTAGAACATaGGGTTGTAACAAAGTTGATATCCTTGGGCTGTCG | + |
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Preference number: 6 (lower is better) Translates to: QIINIIYTTLRT*GCNKVDILGLS Trigger: CGACAGCCCAAGGATATCAACTTTGTTACAACCCAATGTTCTAAGTGTGGTATATATTATGTTTATGATCTG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094522.8 |
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