Pregenerated sensors for PRAMEL26 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059218Ensembl transcript IDs: ENSMUST00000075045.4, ENSMUST00000105769.8
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATAGTGCTTAACATCTTTTATAGATGCAATACTCTTTACCAGCTCTaGGGACATTCCTTTCTTTTCAGTGTGTCTCAGACATTTAGGTGG | + |
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Preference number: 1 (lower is better) Translates to: IVLNIFYRCNTLYQL*GHSFLFSVSQTFRW Trigger: CCACCTAAATGTCTGAGACACACTGAAAAGAAAGGAATGTCCTCAGAGCTGGTAAAGAGTATTGCATCTATAAAAGATGTTAAGCACTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| 3UTR-3UTR GCA 90 bp | CATTCCTTTCTTTTCAGTGTGTCTCAGACATTTAGGTGGTTGACACATCTATGCCAATTCCCAATAGTATaGTACCATTTTTCTCTTCCA | + |
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Preference number: 2 (lower is better) Translates to: HSFLFSVSQTFRWLTHLCQFPIV*YHFSLP Trigger: TGGAAGAGAAAAATGGTAGCATACTATTGGGAATTG...GCATAGATGTGTCAACCACCTAAATGTCTGAGACACACTGAAAAGAAAGGAATG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| 3UTR CCA 72 bp | CATTCCTTTCTTTTCAGTGTGTCTCAGACATTTAGGTaGTTGACACATCTATGCTCCTTCCAGCAAGGGACA | + |
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Preference number: 3 (lower is better) Translates to: HSFLFSVSQTFR*LTHLCSFQQGT Trigger: TGTCCCTTGCTGGAAGGAGCATAGATGTGTCAACCACCTAAATGTCTGAGACACACTGAAAAGAAAGGAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| 3UTR-3UTR CAA 90 bp | TTTATAGATGCAATACTCTTTACCAGCTCTGAGGACATTCCTTTCTTTTCAGTGCAGACATTTAGGTGGTaGACACATCTATGCTCCTTC | + |
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Preference number: 3 (lower is better) Translates to: FIDAILFTSSEDIPFFSVQTFRW*THLCSF Trigger: GAAGGAGCATAGATGTGTCAACCACCTAAATGTCTG...CACTGAAAAGAAAGGAATGTCCTCAGAGCTGGTAAAGAGTATTGCATCTATAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| 3UTR GCA 72 bp | ATTGTATGCAGTCAACAGACGGGAACAACATTTTCATaGAAGGATGCCTGTATTGTAACACACACAAACTAC | + |
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Preference number: 3 (lower is better) Translates to: IVCSQQTGTTFS*KDACIVTHTNY Trigger: GTAGTTTGTGTGTGTTACAATACAGGCATCCTTGCATGAAAATGTTGTTCCCGTCTGTTGACTGCATACAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS-3UTR TCA 90 bp | CAGCTCACCAGGGACTCTACAGAGAACAATAAGCCCCATAACAAGCAAGTGAGGTATTGGGCAGGTCCTTaGGAGCAGAAATGGCCAAGT | + |
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Preference number: 4 (lower is better) Translates to: QLTRDSTENNKPHNKQVRYWAGP*EQKWPS Trigger: ACTTGGCCATTTCTGCTCTCAAGGACCTGCCCAATA...CCTCACTTGCTTGTTATGGGGCTTATTGTTCTCTGTAGAGTCCCTGGTGAGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105769.8 |
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| CDS-3UTR TCA 90 bp | AGGGACTCTACAGAGAACAATAAGCCCCATAACAAGCAAGTGAGGCAGAGCTCCCAAGGTGGCCCTCCATaGATTGGAGTTCTGTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: RDSTENNKPHNKQVRQSSQGGPP*IGVLLS Trigger: TGACAACAGAACTCCAATTCATGGAGGGCCACCTTG...GGAGCTCTGCCTCACTTGCTTGTTATGGGGCTTATTGTTCTCTGTAGAGTCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105769.8 |
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| CDS-3UTR CCA 90 bp | CTCACCAGGGACTCTACAGAGAACAATAAGCCCCATAACAAGCAAGTGAGGCAGTCCTACAGAAAGGTATaGGAAGGGCCACACAGGTAT | + |
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Preference number: 4 (lower is better) Translates to: LTRDSTENNKPHNKQVRQSYRKV*EGPHRY Trigger: ATACCTGTGTGGCCCTTCCCATACCTTTCTGTAGGA...CTGCCTCACTTGCTTGTTATGGGGCTTATTGTTCTCTGTAGAGTCCCTGGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105769.8 |
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| CDS-3UTR CCA 90 bp | GACTCTACAGAGAACAATAAGCCCCATAACAAGCAAGTGAGGCAGAGCTCCATGCCAGCATCAGTCAGGTaGAGAGATCTGAGCTCAAAA | + |
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Preference number: 4 (lower is better) Translates to: DSTENNKPHNKQVRQSSMPASVR*RDLSSK Trigger: TTTTGAGCTCAGATCTCTCCACCTGACTGATGCTGG...CATGGAGCTCTGCCTCACTTGCTTGTTATGGGGCTTATTGTTCTCTGTAGAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105769.8 |
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| CDS-3UTR TCA 90 bp | CAGCTCACCAGGGACTCTACAGAGAACAATAAGCCCCATAACAAGCAAGTGAGGTCAAAGTGTCTAAGTTaGGGTTCTTCAGCATCGTTC | + |
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Preference number: 4 (lower is better) Translates to: QLTRDSTENNKPHNKQVRSKCLS*GSSASF Trigger: GAACGATGCTGAAGAACCTCAACTTAGACACTTTGA...CCTCACTTGCTTGTTATGGGGCTTATTGTTCTCTGTAGAGTCCCTGGTGAGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105769.8 |
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| CDS-3UTR TCA 90 bp | GACTCTACAGAGAACAATAAGCCCCATAACAAGCAAGTGAGGCAGAGCTCCATGTCAGGTGGAGAGATCTaGGCTCAAAAATATTCAGGC | + |
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Preference number: 4 (lower is better) Translates to: DSTENNKPHNKQVRQSSMSGGEI*AQKYSG Trigger: GCCTGAATATTTTTGAGCTCAGATCTCTCCACCTGA...CATGGAGCTCTGCCTCACTTGCTTGTTATGGGGCTTATTGTTCTCTGTAGAGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105769.8 |
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| CDS-3UTR CCA 90 bp | ACCAGGGACTCTACAGAGAACAATAAGCCCCATAACAAGCAAGTGAGGCAGAGCACCACAACCAAATCATaGCTCAAAGTGATCTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: TRDSTENNKPHNKQVRQSTTTKS*LKVISL Trigger: CAGAGAGATCACTTTGAGCCATGATTTGGTTGTGGT...GCTCTGCCTCACTTGCTTGTTATGGGGCTTATTGTTCTCTGTAGAGTCCCTGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105769.8 |
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| CDS-3UTR CCA 90 bp | ACCAGGGACTCTACAGAGAACAATAAGCCCCATAACAAGCAAGTGAGGCAGAGCACTGCAACAAGTAAGTaGAACATTCATCAAGGTGGC | + |
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Preference number: 4 (lower is better) Translates to: TRDSTENNKPHNKQVRQSTATSK*NIHQGG Trigger: GCCACCTTGATGAATGTTCCACTTACTTGTTGCAGT...GCTCTGCCTCACTTGCTTGTTATGGGGCTTATTGTTCTCTGTAGAGTCCCTGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105769.8 |
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| CDS-3UTR TCA 90 bp | CAGCTCACCAGGGACTCTACAGAGAACAATAAGCCCCATAACAAGCAAGTGAGGTTTCTACAGTGTAGATaGATGGAATCTTCTCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: QLTRDSTENNKPHNKQVRFLQCR*MESSLW Trigger: CCAGAGAGAAGATTCCATTCATCTACACTGTAGAAA...CCTCACTTGCTTGTTATGGGGCTTATTGTTCTCTGTAGAGTCCCTGGTGAGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105769.8 |
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| CDS-3UTR TCA 90 bp | ATTTATTGTATGCAGTCAACAGACGGGAACAACATTTTCATGCAAGGATGCCTGCAGGCAGCAGGGCATTaGAGTGAGTTTCCCCCATTT | + |
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Preference number: 4 (lower is better) Translates to: IYCMQSTDGNNIFMQGCLQAAGH*SEFPPF Trigger: AAATGGGGGAAACTCACTTCAATGCCCTGCTGCCTG...CAGGCATCCTTGCATGAAAATGTTGTTCCCGTCTGTTGACTGCATACAATAAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS-3UTR GCA 90 bp | CTCACCAGGGACTCTACAGAGAACAATAAGCCCCATAACAAGCAAGTGAGGCAGACGTCCATCAATAAATaGCTCCTTAAACATCACTGG | + |
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Preference number: 4 (lower is better) Translates to: LTRDSTENNKPHNKQVRQTSINK*LLKHHW Trigger: CCAGTGATGTTTAAGGAGGCATTTATTGATGGACGT...CTGCCTCACTTGCTTGTTATGGGGCTTATTGTTCTCTGTAGAGTCCCTGGTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105769.8 |
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| CDS-3UTR TCA 90 bp | CTCTTTACCAGCTCTGAGGACATTCCTTTCTTTTCAGTGTGTCTCAGACATTTACAAGGTGGCCCTCCATaGATTGGAGTTCTGTTGTCA | + |
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Preference number: 4 (lower is better) Translates to: LFTSSEDIPFFSVCLRHLQGGPP*IGVLLS Trigger: TGACAACAGAACTCCAATTCATGGAGGGCCACCTTG...TAAATGTCTGAGACACACTGAAAAGAAAGGAATGTCCTCAGAGCTGGTAAAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS-3UTR TCA 90 bp | AGGGACTCTACAGAGAACAATAAGCCCCATAACAAGCAAGTGAGGCAGAGCTCCTGGAATGTAGGAAGATaGGAAATCACTGTAATCACT | + |
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Preference number: 4 (lower is better) Translates to: RDSTENNKPHNKQVRQSSWNVGR*EITVIT Trigger: AGTGATTACAGTGATTTCTCATCTTCCTACATTCCA...GGAGCTCTGCCTCACTTGCTTGTTATGGGGCTTATTGTTCTCTGTAGAGTCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105769.8 |
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| 3UTR CAA 72 bp | TCCTTTCTTTTCAGTGTGTCTCAGACATTTAGGTGGTaGACACATCTATGCTCCTTCCAGCAAGGGACATTC | + |
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Preference number: 4 (lower is better) Translates to: SFLFSVSQTFRW*THLCSFQQGTF Trigger: GAATGTCCCTTGCTGGAAGGAGCATAGATGTGTCAACCACCTAAATGTCTGAGACACACTGAAAAGAAAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS-3UTR TCA 90 bp | GATGCAATACTCTTTACCAGCTCTGAGGACATTCCTTTCTTTTCAGTGTGTCTCTCAGGTGGAGAGATCTaGGCTCAAAAATATTCAGGC | + |
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Preference number: 4 (lower is better) Translates to: DAILFTSSEDIPFFSVCLSGGEI*AQKYSG Trigger: GCCTGAATATTTTTGAGCTCAGATCTCTCCACCTGA...GAGACACACTGAAAAGAAAGGAATGTCCTCAGAGCTGGTAAAGAGTATTGCATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS-3UTR CCA 90 bp | ATTTATTGTATGCAGTCAACAGACGGGAACAACATTTTCATGCAAGGATGCCTGTCCTACAGAAAGGTATaGGAAGGGCCACACAGGTAT | + |
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Preference number: 4 (lower is better) Translates to: IYCMQSTDGNNIFMQGCLSYRKV*EGPHRY Trigger: ATACCTGTGTGGCCCTTCCCATACCTTTCTGTAGGA...CAGGCATCCTTGCATGAAAATGTTGTTCCCGTCTGTTGACTGCATACAATAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS-3UTR TCA 90 bp | TTTATAGATGCAATACTCTTTACCAGCTCTGAGGACATTCCTTTCTTTTCAGTGTATTGGGCAGGTCCTTaGGAGCAGAAATGGCCAAGT | + |
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Preference number: 4 (lower is better) Translates to: FIDAILFTSSEDIPFFSVYWAGP*EQKWPS Trigger: ACTTGGCCATTTCTGCTCTCAAGGACCTGCCCAATA...CACTGAAAAGAAAGGAATGTCCTCAGAGCTGGTAAAGAGTATTGCATCTATAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS-3UTR CCA 90 bp | CTCTTTACCAGCTCTGAGGACATTCCTTTCTTTTCAGTGTGTCTCAGACATTTACGTACATCAGTCAGGTaGAGAGATCTGAGCTCAAAA | + |
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Preference number: 4 (lower is better) Translates to: LFTSSEDIPFFSVCLRHLRTSVR*RDLSSK Trigger: TTTTGAGCTCAGATCTCTCCACCTGACTGATGTACG...TAAATGTCTGAGACACACTGAAAAGAAAGGAATGTCCTCAGAGCTGGTAAAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS-3UTR TCA 90 bp | CTCTTTACCAGCTCTGAGGACATTCCTTTCTTTTCAGTGTGTCTCAGACATTTATCAAAGTGTCTAAGTTaGGGTTCTTCAGCATCGTTC | + |
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Preference number: 4 (lower is better) Translates to: LFTSSEDIPFFSVCLRHLSKCLS*GSSASF Trigger: GAACGATGCTGAAGAACCTCAACTTAGACACTTTGA...TAAATGTCTGAGACACACTGAAAAGAAAGGAATGTCCTCAGAGCTGGTAAAGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS-3UTR CCA 90 bp | ATTGTATGCAGTCAACAGACGGGAACAACATTTTCATGCAAGGATGCCTGTATTACCACAACCAAATCATaGCTCAAAGTGATCTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: IVCSQQTGTTFSCKDACITTTKS*LKVISL Trigger: CAGAGAGATCACTTTGAGCCATGATTTGGTTGTGGT...AATACAGGCATCCTTGCATGAAAATGTTGTTCCCGTCTGTTGACTGCATACAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS-3UTR CCA 90 bp | CATTCCTTTCTTTTCAGTGTGTCTCAGACATTTAGGTGGTTGACACATCTATGCAGGACTATTCTCAACTaGCTTCTCCTGTTCCATGAA | + |
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Preference number: 4 (lower is better) Translates to: HSFLFSVSQTFRWLTHLCRTILN*LLLFHE Trigger: TTCATGGAACAGGAGAAGCCAGTTGAGAATAGTCCT...GCATAGATGTGTCAACCACCTAAATGTCTGAGACACACTGAAAAGAAAGGAATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS-3UTR CCA 90 bp | TTTACCAGCTCTGAGGACATTCCTTTCTTTTCAGTGTGTCTCAGACATTTAGGTACTGCAACAAGTAAGTaGAACATTCATCAAGGTGGC | + |
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Preference number: 4 (lower is better) Translates to: FTSSEDIPFFSVCLRHLGTATSK*NIHQGG Trigger: GCCACCTTGATGAATGTTCCACTTACTTGTTGCAGT...ACCTAAATGTCTGAGACACACTGAAAAGAAAGGAATGTCCTCAGAGCTGGTAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS-3UTR TCA 90 bp | CATTCCTTTCTTTTCAGTGTGTCTCAGACATTTAGGTGGTTGACACATCTATGCTTTCTACAGTGTAGATaGATGGAATCTTCTCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: HSFLFSVSQTFRWLTHLCFLQCR*MESSLW Trigger: CCAGAGAGAAGATTCCATTCATCTACACTGTAGAAA...GCATAGATGTGTCAACCACCTAAATGTCTGAGACACACTGAAAAGAAAGGAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS-3UTR GCA 90 bp | ATGCAATACTCTTTACCAGCTCTGAGGACATTCCTTTCTTTTCAGTGTGTCTCAACGTCCATCAATAAATaGCTCCTTAAACATCACTGG | + |
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Preference number: 4 (lower is better) Translates to: MQYSLPALRTFLSFQCVSTSINK*LLKHHW Trigger: CCAGTGATGTTTAAGGAGGCATTTATTGATGGACGT...TGAGACACACTGAAAAGAAAGGAATGTCCTCAGAGCTGGTAAAGAGTATTGCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS-3UTR TCA 90 bp | TTATTGTATGCAGTCAACAGACGGGAACAACATTTTCATGCAAGGATGCCTGTAGGAAAGAACTGGTTTTaGAATCAGTATATCTATCCC | + |
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Preference number: 4 (lower is better) Translates to: LLYAVNRREQHFHARMPVGKNWF*NQYIYP Trigger: GGGATAGATATACTGATTTCAAAACCAGTTCTTTCC...TACAGGCATCCTTGCATGAAAATGTTGTTCCCGTCTGTTGACTGCATACAATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS-3UTR TCA 90 bp | TTTATTGTATGCAGTCAACAGACGGGAACAACATTTTCATGCAAGGATGCCTGTTGGAATGTAGGAAGATaGGAAATCACTGTAATCACT | + |
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Preference number: 4 (lower is better) Translates to: FIVCSQQTGTTFSCKDACWNVGR*EITVIT Trigger: AGTGATTACAGTGATTTCTCATCTTCCTACATTCCA...ACAGGCATCCTTGCATGAAAATGTTGTTCCCGTCTGTTGACTGCATACAATAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS-3UTR CAA 90 bp | CTCACCAGGGACTCTACAGAGAACAATAAGCCCCATAACAAGCAAGTGAGGCAGACTGGGAACATCATATaGGGCAGGTCCTTGAGAGCA | + |
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Preference number: 5 (lower is better) Translates to: LTRDSTENNKPHNKQVRQTGNII*GRSLRA Trigger: TGCTCTCAAGGACCTGCCCAATATGATGTTCCCAGT...CTGCCTCACTTGCTTGTTATGGGGCTTATTGTTCTCTGTAGAGTCCCTGGTGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105769.8 |
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| CDS CCA 90 bp | ACTGGCTTCTCCTGTTCCATGAACTCTGGTAAGCCTTCGACTTCATaGGATCCAGCCCATACCACAACCAAATCATGGCTCAAAGTGATC | + |
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Preference number: 5 (lower is better) Translates to: TGFSCSMNSGKPSTS*DPAHTTTKSWLKVI Trigger: GATCACTTTGAGCCATGATTTGGTTGTGGTATGGGCTGGATCCCATGAAGTCGAAGGCTTACCAGAGTTCATGGAACAGGAGAAGCCAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075045.4 ENSMUST00000105769.8 |
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| CDS-3UTR CAA 90 bp | GACTCTACAGAGAACAATAAGCCCCATAACAAGCAAGTGAGGCAGAGCTCCATGATATTGGGCAGGTCCTaGAGAGCAGAAATGGCCAAG | + |
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Preference number: 5 (lower is better) Translates to: DSTENNKPHNKQVRQSSMILGRS*RAEMAK Trigger: CTTGGCCATTTCTGCTCTCAAGGACCTGCCCAATAT...CATGGAGCTCTGCCTCACTTGCTTGTTATGGGGCTTATTGTTCTCTGTAGAGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105769.8 |
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| CDS-3UTR CAA 90 bp | CTCACCAGGGACTCTACAGAGAACAATAAGCCCCATAACAAGCAAGTGAGGCAGGTGGCCCTCCATGAATaGGAGTTCTGTTGTCACTTT | + |
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Preference number: 5 (lower is better) Translates to: LTRDSTENNKPHNKQVRQVALHE*EFCCHF Trigger: AAAGTGACAACAGAACTCCAATTCATGGAGGGCCAC...CTGCCTCACTTGCTTGTTATGGGGCTTATTGTTCTCTGTAGAGTCCCTGGTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105769.8 |
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| CDS-3UTR CAA 90 bp | TTGTATGCAGTCAACAGACGGGAACAACATTTTCATGCAAGGATGCCTGTATTGACTGGGAACATCATATaGGGCAGGTCCTTGAGAGCA | + |
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Preference number: 5 (lower is better) Translates to: LYAVNRREQHFHARMPVLTGNII*GRSLRA Trigger: TGCTCTCAAGGACCTGCCCAATATGATGTTCCCAGT...CAATACAGGCATCCTTGCATGAAAATGTTGTTCCCGTCTGTTGACTGCATACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS-3UTR CAA 90 bp | ATGCAATACTCTTTACCAGCTCTGAGGACATTCCTTTCTTTTCAGTGTGTCTCACCAAAGGTGACTTTCTaGGGCTCTCTTATGGCCCTG | + |
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Preference number: 5 (lower is better) Translates to: MQYSLPALRTFLSFQCVSPKVTF*GSLMAL Trigger: CAGGGCCATAAGAGAGCCCAAGAAAGTCACCTTTGG...TGAGACACACTGAAAAGAAAGGAATGTCCTCAGAGCTGGTAAAGAGTATTGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS TCA 90 bp | CCCACTGCAACAAGTAAGTGGAACATTCATCAAGGTGGCCCTCCATaGATTGGAGTTCTGTTGTCACTTTCAATTTGTTCTTTGTCCCAT | + |
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Preference number: 5 (lower is better) Translates to: PTATSKWNIHQGGPP*IGVLLSLSICSLSH Trigger: ATGGGACAAAGAACAAATTGAAAGTGACAACAGAACTCCAATTCATGGAGGGCCACCTTGATGAATGTTCCACTTACTTGTTGCAGTGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075045.4 ENSMUST00000105769.8 |
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| CDS TCA 90 bp | CAAAGTGATCTCTCTGAGCTTGCACCTACTGGAAAGAACTGGTTTTaGAATCAGTATATCTATCCCCTCAAGAACAGCCTTCAAAGTGTC | + |
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Preference number: 5 (lower is better) Translates to: QSDLSELAPTGKNWF*NQYIYPLKNSLQSV Trigger: GACACTTTGAAGGCTGTTCTTGAGGGGATAGATATACTGATTTCAAAACCAGTTCTTTCCAGTAGGTGCAAGCTCAGAGAGATCACTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075045.4 ENSMUST00000105769.8 |
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| CDS-3UTR CAA 90 bp | TTTATAGATGCAATACTCTTTACCAGCTCTGAGGACATTCCTTTCTTTTCAGTGATATTGGGCAGGTCCTaGAGAGCAGAAATGGCCAAG | + |
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Preference number: 5 (lower is better) Translates to: FIDAILFTSSEDIPFFSVILGRS*RAEMAK Trigger: CTTGGCCATTTCTGCTCTCAAGGACCTGCCCAATAT...CACTGAAAAGAAAGGAATGTCCTCAGAGCTGGTAAAGAGTATTGCATCTATAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS CCA 90 bp | CTTTGGTTAAGCCATAAATTTTCAGCTTTCTACAGTGTAGATGAATaGAATCTTCTCTCTGGTAGGCCCACTGCAACAAGTAAGTGGAAC | + |
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Preference number: 5 (lower is better) Translates to: LWLSHKFSAFYSVDE*NLLSGRPTATSKWN Trigger: GTTCCACTTACTTGTTGCAGTGGGCCTACCAGAGAGAAGATTCCATTCATCTACACTGTAGAAAGCTGAAAATTTATGGCTTAACCAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075045.4 ENSMUST00000105769.8 |
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| CDS-3UTR CAA 90 bp | TTTATAGATGCAATACTCTTTACCAGCTCTGAGGACATTCCTTTCTTTTCAGTGGTGGCCCTCCATGAATaGGAGTTCTGTTGTCACTTT | + |
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Preference number: 5 (lower is better) Translates to: FIDAILFTSSEDIPFFSVVALHE*EFCCHF Trigger: AAAGTGACAACAGAACTCCAATTCATGGAGGGCCAC...CACTGAAAAGAAAGGAATGTCCTCAGAGCTGGTAAAGAGTATTGCATCTATAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS TCA 90 bp | CAAGAAGTAAATTACTTAAACGTACATCAGTCAGGTGGAGAGATCTaGGCTCAAAAATATTCAGGCAATAGGGGAGGTAATCCAAGTCTG | + |
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Preference number: 5 (lower is better) Translates to: QEVNYLNVHQSGGEI*AQKYSGNRGGNPSL Trigger: CAGACTTGGATTACCTCCCCTATTGCCTGAATATTTTTGAGCTCAGATCTCTCCACCTGACTGATGTACGTTTAAGTAATTTACTTCTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS-3UTR CAA 90 bp | ATTGTATGCAGTCAACAGACGGGAACAACATTTTCATGCAAGGATGCCTGTATTCTTTCAATTTGTTCTTaGTCCCATAGCCAGGACTAT | + |
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Preference number: 5 (lower is better) Translates to: IVCSQQTGTTFSCKDACILSICS*SHSQDY Trigger: ATAGTCCTGGCTATGGGACAAAGAACAAATTGAAAG...AATACAGGCATCCTTGCATGAAAATGTTGTTCCCGTCTGTTGACTGCATACAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS TCA 72 bp | AGCCAGGACTATTCTCAACTGGCTTCTCCTGTTCCATaGACTCTGGTAAGCCTTCGACTTCATGGGATCCAG | + |
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Preference number: 6 (lower is better) Translates to: SQDYSQLASPVP*TLVSLRLHGIQ Trigger: CTGGATCCCATGAAGTCGAAGGCTTACCAGAGTTCATGGAACAGGAGAAGCCAGTTGAGAATAGTCCTGGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075045.4 ENSMUST00000105769.8 |
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| CDS CCA 72 bp | TCCTGTTCCATGAACTCTGGTAAGCCTTCGACTTCATaGGATCCAGCCCATACCACAACCAAATCATGGCTC | + |
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Preference number: 6 (lower is better) Translates to: SCSMNSGKPSTS*DPAHTTTKSWL Trigger: GAGCCATGATTTGGTTGTGGTATGGGCTGGATCCCATGAAGTCGAAGGCTTACCAGAGTTCATGGAACAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075045.4 ENSMUST00000105769.8 |
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| CDS TCA 72 bp | AGGTCCAGTGGCCAGCATCAGTCAGGTGGAGAGATCTaGGCTCAAAAATATTCAGGCAATAGGGGAGGTAAT | + |
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Preference number: 6 (lower is better) Translates to: RSSGQHQSGGEI*AQKYSGNRGGN Trigger: ATTACCTCCCCTATTGCCTGAATATTTTTGAGCTCAGATCTCTCCACCTGACTGATGCTGGCCACTGGACCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105769.8 |
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| CDS CAA 90 bp | GACCCACCACACTTGGAGCATTTGATTGTACCAAAGGTGACTTTCTaGGGCTCTCTTATGGCCCTGAGTATATCCAGGAGCTCAGAACAA | + |
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Preference number: 6 (lower is better) Translates to: DPPHLEHLIVPKVTF*GSLMALSISRSSEQ Trigger: TTGTTCTGAGCTCCTGGATATACTCAGGGCCATAAGAGAGCCCAAGAAAGTCACCTTTGGTACAATCAAATGCTCCAAGTGTGGTGGGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS CAA 72 bp | CACTTGGAGCATTTGATTGTACCAAAGGTGACTTTCTaGGGCTCTCTTATGGCCCTGAGTATATCCAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: HLEHLIVPKVTF*GSLMALSISRS Trigger: GCTCCTGGATATACTCAGGGCCATAAGAGAGCCCAAGAAAGTCACCTTTGGTACAATCAAATGCTCCAAGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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| CDS CAA 72 bp | TTAAACATCACTGGGAACATCATATTGGGCAGGTCCTaGAGAGCAGAAATGGCCAAGTACTCATCCCTCAGT | + |
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Preference number: 6 (lower is better) Translates to: LNITGNIILGRS*RAEMAKYSSLS Trigger: ACTGAGGGATGAGTACTTGGCCATTTCTGCTCTCAAGGACCTGCCCAATATGATGTTCCCAGTGATGTTTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075045.4 ENSMUST00000105769.8 |
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| CDS CAA 72 bp | ATAAATGCCTCCTTAAACATCACTGGGAACATCATATaGGGCAGGTCCTTGAGAGCAGAAATGGCCAAGTAC | + |
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Preference number: 6 (lower is better) Translates to: INASLNITGNII*GRSLRAEMAKY Trigger: GTACTTGGCCATTTCTGCTCTCAAGGACCTGCCCAATATGATGTTCCCAGTGATGTTTAAGGAGGCATTTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075045.4 ENSMUST00000105769.8 |
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| CDS CAA 90 bp | CTGCAACAAGTAAGTGGAACATTCATCAAGGTGGCCCTCCATGAATaGGAGTTCTGTTGTCACTTTCAATTTGTTCTTTGTCCCATAGCC | + |
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Preference number: 6 (lower is better) Translates to: LQQVSGTFIKVALHE*EFCCHFQFVLCPIA Trigger: GGCTATGGGACAAAGAACAAATTGAAAGTGACAACAGAACTCCAATTCATGGAGGGCCACCTTGATGAATGTTCCACTTACTTGTTGCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075045.4 ENSMUST00000105769.8 |
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| CDS TCA 72 bp | CTCTCTGAGCTTGCACCTACTGGAAAGAACTGGTTTTaGAATCAGTATATCTATCCCCTCAAGAACAGCCTT | + |
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Preference number: 6 (lower is better) Translates to: LSELAPTGKNWF*NQYIYPLKNSL Trigger: AAGGCTGTTCTTGAGGGGATAGATATACTGATTTCAAAACCAGTTCTTTCCAGTAGGTGCAAGCTCAGAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075045.4 ENSMUST00000105769.8 |
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| CDS GCA 72 bp | CATGGCGGTCAAGATCTTTGTACGTCCATCAATAAATaGCTCCTTAAACATCACTGGGAACATCATATTGGG | + |
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Preference number: 6 (lower is better) Translates to: HGGQDLCTSINK*LLKHHWEHHIG Trigger: CCCAATATGATGTTCCCAGTGATGTTTAAGGAGGCATTTATTGATGGACGTACAAAGATCTTGACCGCCATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075045.4 ENSMUST00000105769.8 |
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| CDS CAA 90 bp | GCCCATACCACAACCAAATCATGGCTCAAAGTGATCTCTCTGAGCTaGCACCTACTGGAAAGAACTGGTTTTGAAATCAGTATATCTATC | + |
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Preference number: 6 (lower is better) Translates to: AHTTTKSWLKVISLS*HLLERTGFEISISI Trigger: GATAGATATACTGATTTCAAAACCAGTTCTTTCCAGTAGGTGCAAGCTCAGAGAGATCACTTTGAGCCATGATTTGGTTGTGGTATGGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075045.4 ENSMUST00000105769.8 |
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| CDS CCA 72 bp | AGCCATAAATTTTCAGCTTTCTACAGTGTAGATGAATaGAATCTTCTCTCTGGTAGGCCCACTGCAACAAGT | + |
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Preference number: 6 (lower is better) Translates to: SHKFSAFYSVDE*NLLSGRPTATS Trigger: ACTTGTTGCAGTGGGCCTACCAGAGAGAAGATTCCATTCATCTACACTGTAGAAAGCTGAAAATTTATGGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075045.4 ENSMUST00000105769.8 |
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| CDS CAA 72 bp | ACAACCAAATCATGGCTCAAAGTGATCTCTCTGAGCTaGCACCTACTGGAAAGAACTGGTTTTGAAATCAGT | + |
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Preference number: 6 (lower is better) Translates to: TTKSWLKVISLS*HLLERTGFEIS Trigger: ACTGATTTCAAAACCAGTTCTTTCCAGTAGGTGCAAGCTCAGAGAGATCACTTTGAGCCATGATTTGGTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075045.4 ENSMUST00000105769.8 |
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| CDS CAA 72 bp | GTAAGTGGAACATTCATCAAGGTGGCCCTCCATGAATaGGAGTTCTGTTGTCACTTTCAATTTGTTCTTTGT | + |
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Preference number: 6 (lower is better) Translates to: VSGTFIKVALHE*EFCCHFQFVLC Trigger: ACAAAGAACAAATTGAAAGTGACAACAGAACTCCAATTCATGGAGGGCCACCTTGATGAATGTTCCACTTAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075045.4 ENSMUST00000105769.8 |
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| CDS TCA 72 bp | AATTACTTAAACGTACATCAGTCAGGTGGAGAGATCTaGGCTCAAAAATATTCAGGCAATAGGGGAGGTAAT | + |
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Preference number: 6 (lower is better) Translates to: NYLNVHQSGGEI*AQKYSGNRGGN Trigger: ATTACCTCCCCTATTGCCTGAATATTTTTGAGCTCAGATCTCTCCACCTGACTGATGTACGTTTAAGTAATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075045.4 |
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