Pregenerated sensors for PRAMEL25 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000066031Ensembl transcript IDs: ENSMUST00000085144.11, ENSMUST00000105770.2, ENSMUST00000149739.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | CAGCAAGGCACTGAACTGAAAGTCCACTATACAACATaGCTCCAATTCCAGGATTTTCAGGGTATCTCCAAC | + |
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Preference number: 3 (lower is better) Translates to: QQGTELKVHYTT*LQFQDFQGISN Trigger: GTTGGAGATACCCTGAAAATCCTGGAATTGGAGTCATGTTGTATAGTGGACTTTCAGTTCAGTGCCTTGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105770.2 |
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| 3UTR GCA 72 bp | TGTAACACACACAAACTACAAGTGCTTGATACTTTCTaGAGATGCAACATCCATTCACCAGCTCTGAGGAAG | + |
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Preference number: 3 (lower is better) Translates to: CNTHKLQVLDTF*RCNIHSPALRK Trigger: CTTCCTCAGAGCTGGTGAATGGATGTTGCATCTGCAGAAAGTATCAAGCACTTGTAGTTTGTGTGTGTTACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| 3UTR GCA 72 bp | ACACAGAAAACAGATTGGGCCAGTTTCATAAAATGGTaGCTCTATTGTAACACACACAAACTACAAGTGCTT | + |
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Preference number: 3 (lower is better) Translates to: TQKTDWASFIKW*LYCNTHKLQVL Trigger: AAGCACTTGTAGTTTGTGTGTGTTACAATAGAGGCACCATTTTATGAAACTGGCCCAATCTGTTTTCTGTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS-3UTR TCA 90 bp | AACATCCATTCACCAGCTCTGAGGAAGGTATTGACTTTCCTATGTATCTCAGACCACTCACTGATCAGCTaGCTCAGCAGGGCTGTGTGG | + |
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Preference number: 4 (lower is better) Translates to: NIHSPALRKVLTFLCISDHSLIS*LSRAVW Trigger: CCACACAGCCCTGCTGAGTCAGCTGATCAGTGAGTG...GTCTGAGATACATAGGAAAGTCAATACCTTCCTCAGAGCTGGTGAATGGATGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS-3UTR TCA 90 bp | AACATCCATTCACCAGCTCTGAGGAAGGTATTGACTTTCCTATGTATCTCAGACCAGGGTAACACTCACTaGTCAGCTGACTCAGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: NIHSPALRKVLTFLCISDQGNTH*SADSAG Trigger: CCCTGCTGAGTCAGCTGATCAGTGAGTGTTACCCTG...GTCTGAGATACATAGGAAAGTCAATACCTTCCTCAGAGCTGGTGAATGGATGTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS-3UTR CCA 90 bp | AACATCCATTCACCAGCTCTGAGGAAGGTATTGACTTTCCTATGTATCTCAGACCCAGATTCTGGAGGGTaGGTGGGGAATAGCATTCCT | + |
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Preference number: 4 (lower is better) Translates to: NIHSPALRKVLTFLCISDPDSGG*VGNSIP Trigger: AGGAATGCTATTCCCCACCCACCCTCCAGAATCTGG...GTCTGAGATACATAGGAAAGTCAATACCTTCCTCAGAGCTGGTGAATGGATGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS-3UTR CCA 90 bp | CCACTATACAACATGACTCCAATTCCAGGATTTTCAGGGTATCTCCAACTCTCTCCAGATTCTGGAGGGTaGGTGGGGAATAGCATTCCT | + |
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Preference number: 4 (lower is better) Translates to: PLYNMTPIPGFSGYLQLSPDSGG*VGNSIP Trigger: AGGAATGCTATTCCCCACCCACCCTCCAGAATCTGG...AGAGAGTTGGAGATACCCTGAAAATCCTGGAATTGGAGTCATGTTGTATAGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105770.2 |
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| CDS-3UTR TCA 90 bp | AACATCCATTCACCAGCTCTGAGGAAGGTATTGACTTTCCTATGTATCTCAGACGCTGTCTTTTGGCTTTaGGTATATCCAGGAGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: NIHSPALRKVLTFLCISDAVFWL*VYPGAQ Trigger: CTGAGCTCCTGGATATACTCAAAGCCAAAAGACAGC...GTCTGAGATACATAGGAAAGTCAATACCTTCCTCAGAGCTGGTGAATGGATGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS-3UTR GCA 90 bp | CAACATCCATTCACCAGCTCTGAGGAAGGTATTGACTTTCCTATGTATCTCAGACAAGTCTGCCCTTCATaGGAAGGACTTCAGTCATCA | + |
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Preference number: 4 (lower is better) Translates to: QHPFTSSEEGIDFPMYLRQVCPS*EGLQSS Trigger: TGATGACTGAAGTCCTTCGCATGAAGGGCAGACTTG...TCTGAGATACATAGGAAAGTCAATACCTTCCTCAGAGCTGGTGAATGGATGTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS-3UTR CCA 90 bp | TTCACCAGCTCTGAGGAAGGTATTGACTTTCCTATGTATCTCAGACTTTTAGGTATTCTGGAGGGTGGGTaGGGAATAGCATTCCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: FTSSEEGIDFPMYLRLLGILEGG*GIAFLC Trigger: ACAGAGGAATGCTATTCCCCACCCACCCTCCAGAAT...ACCTAAAAGTCTGAGATACATAGGAAAGTCAATACCTTCCTCAGAGCTGGTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS-3UTR CCA 90 bp | AACATCCATTCACCAGCTCTGAGGAAGGTATTGACTTTCCTATGTATCTCAGACAAGCCTTCACCTTCATaGGATCCAGCCCATAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: NIHSPALRKVLTFLCISDKPSPS*DPAHKF Trigger: GAACTTATGGGCTGGATCCCATGAAGGTGAAGGCTT...GTCTGAGATACATAGGAAAGTCAATACCTTCCTCAGAGCTGGTGAATGGATGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS-3UTR CCA 90 bp | CCACTATACAACATGACTCCAATTCCAGGATTTTCAGGGTATCTCCAACTCTCTAAGCCTTCACCTTCATaGGATCCAGCCCATAAGTTC | + |
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Preference number: 4 (lower is better) Translates to: PLYNMTPIPGFSGYLQLSKPSPS*DPAHKF Trigger: GAACTTATGGGCTGGATCCCATGAAGGTGAAGGCTT...AGAGAGTTGGAGATACCCTGAAAATCCTGGAATTGGAGTCATGTTGTATAGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105770.2 |
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| CDS-3UTR TCA 90 bp | ACACACAAACTACAAGTGCTTGATACTTTCTGCAGATGCAACATCCATTCACCATCTAAAGACTCATCCTaGTCTGGACAATGGCCACAG | + |
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Preference number: 4 (lower is better) Translates to: THKLQVLDTFCRCNIHSPSKDSS*SGQWPQ Trigger: CTGTGGCCATTGTCCAGATCAGGATGAGTCTTTAGA...TGGTGAATGGATGTTGCATCTGCAGAAAGTATCAAGCACTTGTAGTTTGTGTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS-3UTR CCA 90 bp | CAGAGAGAAATTATTATCATAGAAAGTGACCTCTCTGAGGTGAGAACATTGGCTATTCTGGAGGGTGGGTaGGGAATAGCATTCCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: QREIIIIESDLSEVRTLAILEGG*GIAFLC Trigger: ACAGAGGAATGCTATTCCCCACCCACCCTCCAGAAT...AGCCAATGTTCTCACCTCAGAGAGGTCACTTTCTATGATAATAATTTCTCTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105770.2 |
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| CDS-3UTR CCA 90 bp | ACACACAAACTACAAGTGCTTGATACTTTCTGCAGATGCAACATCCATTCACCAGAATCTGTTCTCTGCTaGGCCCACTGCAACAAGTAT | + |
|
Preference number: 4 (lower is better) Translates to: THKLQVLDTFCRCNIHSPESVLC*AHCNKY Trigger: ATACTTGTTGCAGTGGGCCCAGCAGAGAACAGATTC...TGGTGAATGGATGTTGCATCTGCAGAAAGTATCAAGCACTTGTAGTTTGTGTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| 3UTR CAA 72 bp | GGTGCCTCTATTGTAACACACACAAACTACAAGTGCTaGATACTTTCTGCAGATGCAACATCCATTCACCAG | + |
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Preference number: 4 (lower is better) Translates to: GASIVTHTNYKC*ILSADATSIHQ Trigger: CTGGTGAATGGATGTTGCATCTGCAGAAAGTATCAAGCACTTGTAGTTTGTGTGTGTTACAATAGAGGCACC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS-3UTR TCA 90 bp | CAGAGAGAAATTATTATCATAGAAAGTGACCTCTCTGAGGTGAGAACATTGGCTTCTAAAGACTCATCCTaGTCTGGACAATGGCCACAG | + |
|
Preference number: 4 (lower is better) Translates to: QREIIIIESDLSEVRTLASKDSS*SGQWPQ Trigger: CTGTGGCCATTGTCCAGATCAGGATGAGTCTTTAGA...AGCCAATGTTCTCACCTCAGAGAGGTCACTTTCTATGATAATAATTTCTCTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105770.2 |
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| CDS-3UTR CCA 90 bp | CAACATCCATTCACCAGCTCTGAGGAAGGTATTGACTTTCCTATGTATCTCAGAGCCATTCAGGTATCATaGCCTTCAAGATCCCTATAT | + |
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Preference number: 4 (lower is better) Translates to: QHPFTSSEEGIDFPMYLRAIQVS*PSRSLY Trigger: ATATAGGGATCTTGAAGGCCATGATACCTGAATGGC...TCTGAGATACATAGGAAAGTCAATACCTTCCTCAGAGCTGGTGAATGGATGTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS-3UTR CCA 90 bp | ACCAGCTCTGAGGAAGGTATTGACTTTCCTATGTATCTCAGACTTTTAGGTGATAGGACTGTTCTCAATTaGCTGCTTCTCTGTAGTGAA | + |
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Preference number: 4 (lower is better) Translates to: TSSEEGIDFPMYLRLLGDRTVLN*LLLCSE Trigger: TTCACTACAGAGAAGCAGCCAATTGAGAACAGTCCT...ATCACCTAAAAGTCTGAGATACATAGGAAAGTCAATACCTTCCTCAGAGCTGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS-3UTR CCA 90 bp | ACACACAAACTACAAGTGCTTGATACTTTCTGCAGATGCAACATCCATTCACCATCAAAGGAGACACTTTaGAGCTGTCTTTTGGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: THKLQVLDTFCRCNIHSPSKETL*SCLLAL Trigger: CAAAGCCAAAAGACAGCTCCAAAGTGTCTCCTTTGA...TGGTGAATGGATGTTGCATCTGCAGAAAGTATCAAGCACTTGTAGTTTGTGTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS-3UTR TCA 90 bp | ACAAACTACAAGTGCTTGATACTTTCTGCAGATGCAACATCCATTCACCAGCTCAATAGCATTCCTCTGTaGCTTCTTCTAAAGACTCAT | + |
|
Preference number: 4 (lower is better) Translates to: TNYKCLILSADATSIHQLNSIPL*LLLKTH Trigger: ATGAGTCTTTAGAAGAAGTCACAGAGGAATGCTATT...GAGCTGGTGAATGGATGTTGCATCTGCAGAAAGTATCAAGCACTTGTAGTTTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS-3UTR GCA 90 bp | ACACACAAACTACAAGTGCTTGATACTTTCTGCAGATGCAACATCCATTCACCACTGTTCTCAATTGGCTaGTTCTCTGTAGTGAATTCT | + |
|
Preference number: 4 (lower is better) Translates to: THKLQVLDTFCRCNIHSPLFSIG*FSVVNS Trigger: AGAATTCACTACAGAGAAGCAGCCAATTGAGAACAG...TGGTGAATGGATGTTGCATCTGCAGAAAGTATCAAGCACTTGTAGTTTGTGTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS-3UTR CCA 90 bp | TTCACCAGCTCTGAGGAAGGTATTGACTTTCCTATGTATCTCAGACTTTTAGGTCCACATTTAGAGCATTaGGTTGTTTCAAAGGAGACA | + |
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Preference number: 4 (lower is better) Translates to: FTSSEEGIDFPMYLRLLGPHLEH*VVSKET Trigger: TGTCTCCTTTGAAACAACCCAATGCTCTAAATGTGG...ACCTAAAAGTCTGAGATACATAGGAAAGTCAATACCTTCCTCAGAGCTGGTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS-3UTR TCA 90 bp | GAAAGTCCACTATACAACATGACTCCAATTCCAGGATTTTCAGGGTATCTCCAAAATAGCATTCCTCTGTaGCTTCTTCTAAAGACTCAT | + |
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Preference number: 4 (lower is better) Translates to: ESPLYNMTPIPGFSGYLQNSIPL*LLLKTH Trigger: ATGAGTCTTTAGAAGAAGTCACAGAGGAATGCTATT...TTGGAGATACCCTGAAAATCCTGGAATTGGAGTCATGTTGTATAGTGGACTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105770.2 |
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| CDS-3UTR CCA 90 bp | ACATATATCACTAAGATGCAGATGTTTGAGTTCACAAATATTCAGGCAATAGGGAGGACTGTTCTCAATTaGCTGCTTCTCTGTAGTGAA | + |
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Preference number: 4 (lower is better) Translates to: TYITKMQMFEFTNIQAIGRTVLN*LLLCSE Trigger: TTCACTACAGAGAAGCAGCCAATTGAGAACAGTCCT...CCCTATTGCCTGAATATTTGTGAACTCAAACATCTGCATCTTAGTGATATATGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105770.2 |
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| CDS-3UTR GCA 90 bp | ACATATATCACTAAGATGCAGATGTTTGAGTTCACAAATATTCAGGCAATAGGGCTGTTCTCAATTGGCTaGTTCTCTGTAGTGAATTCT | + |
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Preference number: 4 (lower is better) Translates to: TYITKMQMFEFTNIQAIGLFSIG*FSVVNS Trigger: AGAATTCACTACAGAGAAGCAGCCAATTGAGAACAG...CCCTATTGCCTGAATATTTGTGAACTCAAACATCTGCATCTTAGTGATATATGT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105770.2 |
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| CDS CCA 90 bp | CAAGATCCCTATATGTCCATCAGTGAAGGCCTCCTCAAAAATTACTaGGAACAGACTCTGGGGCAGGTCCGTGAGAGCAGAAATGGCCAA | + |
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Preference number: 5 (lower is better) Translates to: QDPYMSISEGLLKNY*EQTLGQVRESRNGQ Trigger: TTGGCCATTTCTGCTCTCACGGACCTGCCCCAGAGTCTGTTCCCAGTAATTTTTGAGGAGGCCTTCACTGATGGACATATAGGGATCTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000085144.11 ENSMUST00000105770.2 |
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| CDS TCA 90 bp | GAATTGCCAGATTCTGGAGGGTGGGTGGGGAATAGCATTCCTCTGTaGCTTCTTCTAAAGACTCATCCTGATCTGGACAATGGCCACAGA | + |
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Preference number: 5 (lower is better) Translates to: ELPDSGGWVGNSIPL*LLLKTHPDLDNGHR Trigger: TCTGTGGCCATTGTCCAGATCAGGATGAGTCTTTAGAAGAAGTCACAGAGGAATGCTATTCCCCACCCACCCTCCAGAATCTGGCAATTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085144.11 ENSMUST00000105770.2 |
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| CDS GCA 90 bp | CCCTCAAGGATAGCCTTCAAAGTCTCCAGGTTGCAATTATTTATCTaGTTTCCTAAAGAAAGGTATGGGAAGGGCCATTCAGGTATCATG | + |
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Preference number: 5 (lower is better) Translates to: PSRIAFKVSRLQLFI*FPKERYGKGHSGIM Trigger: CATGATACCTGAATGGCCCTTCCCATACCTTTCTTTAGGAAAGCAGATAAATAATTGCAACCTGGAGACTTTGAAGGCTATCCTTGAGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085144.11 ENSMUST00000105770.2 |
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| CDS GCA 90 bp | TTCAATTCTTTCTTCACCTCACAGCCAGGACTGTTCTCAATTGGCTaGTTCTCTGTAGTGAATTCTGATAAGCCTTCACCTTCATGGGAT | + |
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Preference number: 5 (lower is better) Translates to: FNSFFTSQPGLFSIG*FSVVNSDKPSPSWD Trigger: ATCCCATGAAGGTGAAGGCTTATCAGAATTCACTACAGAGAAGCAGCCAATTGAGAACAGTCCTGGCTGTGAGGTGAAGAAAGAATTGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085144.11 ENSMUST00000105770.2 |
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| CDS-3UTR CAA 90 bp | ACAAACTACAAGTGCTTGATACTTTCTGCAGATGCAACATCCATTCACCAGCTCCTTTGGAGCTGTCTTTaGGCTTTGAGTATATCCAGG | + |
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Preference number: 5 (lower is better) Translates to: TNYKCLILSADATSIHQLLWSCL*ALSISR Trigger: CCTGGATATACTCAAAGCCAAAAGACAGCTCCAAAG...GAGCTGGTGAATGGATGTTGCATCTGCAGAAAGTATCAAGCACTTGTAGTTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS GCA 90 bp | TTTCTGCAGAATAAATTAATAGAATCTGTTCTCTGCTGGGCCCACTaGAACAAGTATGTGGTAGATTCATCAAGTCTGCCCTTCATGCGA | + |
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Preference number: 5 (lower is better) Translates to: FLQNKLIESVLCWAH*NKYVVDSSSLPFMR Trigger: TCGCATGAAGGGCAGACTTGATGAATCTACCACATACTTGTTGCAGTGGGCCCAGCAGAGAACAGATTCTATTAATTTATTCTGCAGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085144.11 ENSMUST00000149739.2 |
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| CDS TCA 90 bp | ATTGGGTTGTTTCAAAGGAGACACTTTGGAGCTGTCTTTTGGCTTTaGGTATATCCAGGAGCTCAGGACAAAAACTTTCTAATCTGTGTG | + |
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Preference number: 5 (lower is better) Translates to: IGLFQRRHFGAVFWL*VYPGAQDKNFLICV Trigger: CACACAGATTAGAAAGTTTTTGTCCTGAGCTCCTGGATATACTCAAAGCCAAAAGACAGCTCCAAAGTGTCTCCTTTGAAACAACCCAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS CCA 90 bp | ATTACTAGCTTTCTGCAGAATAAATTAATAGAATCTGTTCTCTGCTaGGCCCACTGCAACAAGTATGTGGTAGATTCATCAAGTCTGCCC | + |
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Preference number: 5 (lower is better) Translates to: ITSFLQNKLIESVLC*AHCNKYVVDSSSLP Trigger: GGGCAGACTTGATGAATCTACCACATACTTGTTGCAGTGGGCCCAGCAGAGAACAGATTCTATTAATTTATTCTGCAGAAAGCTAGTAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085144.11 ENSMUST00000149739.2 |
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| CDS GCA 90 bp | TCAATTACTAGCTTTCTGCAGAATAAATTAATAGAATCTGTTCTCTaGTGGGCCCACTGCAACAAGTATGTGGTAGATTCATCAAGTCTG | + |
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Preference number: 5 (lower is better) Translates to: SITSFLQNKLIESVL*WAHCNKYVVDSSSL Trigger: CAGACTTGATGAATCTACCACATACTTGTTGCAGTGGGCCCAGCAGAGAACAGATTCTATTAATTTATTCTGCAGAAAGCTAGTAATTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085144.11 ENSMUST00000149739.2 |
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| CDS CAA 90 bp | GCACCCACCACATTTAGAGCATTGGGTTGTTTCAAAGGAGACACTTaGGAGCTGTCTTTTGGCTTTGAGTATATCCAGGAGCTCAGGACA | + |
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Preference number: 6 (lower is better) Translates to: APTTFRALGCFKGDT*ELSFGFEYIQELRT Trigger: TGTCCTGAGCTCCTGGATATACTCAAAGCCAAAAGACAGCTCCAAAGTGTCTCCTTTGAAACAACCCAATGCTCTAAATGTGGTGGGTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS GCA 72 bp | TTCTTCACCTCACAGCCAGGACTGTTCTCAATTGGCTaGTTCTCTGTAGTGAATTCTGATAAGCCTTCACCT | + |
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Preference number: 6 (lower is better) Translates to: FFTSQPGLFSIG*FSVVNSDKPSP Trigger: AGGTGAAGGCTTATCAGAATTCACTACAGAGAAGCAGCCAATTGAGAACAGTCCTGGCTGTGAGGTGAAGAA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085144.11 ENSMUST00000105770.2 |
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| CDS CAA 72 bp | CTGGTCATAAATGTAGCACCCACCACATTTAGAGCATaGGGTTGTTTCAAAGGAGACACTTTGGAGCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: LVINVAPTTFRA*GCFKGDTLELS Trigger: AGACAGCTCCAAAGTGTCTCCTTTGAAACAACCCAATGCTCTAAATGTGGTGGGTGCTACATTTATGACCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS TCA 72 bp | GGAGACAGTGGAGTGTGGGAAGTTGAGAAATCAAGCTaGATATTATCTCCTCATCAAGCTTTTCAGAATCAC | + |
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Preference number: 6 (lower is better) Translates to: GDSGVWEVEKSS*ILSPHQAFQNH Trigger: GTGATTCTGAAAAGCTTGATGAGGAGATAATATTCAGCTTGATTTCTCAACTTCCCACACTCCACTGTCTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085144.11 ENSMUST00000149739.2 |
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| CDS GCA 72 bp | AATAAATTAATAGAATCTGTTCTCTGCTGGGCCCACTaGAACAAGTATGTGGTAGATTCATCAAGTCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: NKLIESVLCWAH*NKYVVDSSSLP Trigger: GGGCAGACTTGATGAATCTACCACATACTTGTTGCAGTGGGCCCAGCAGAGAACAGATTCTATTAATTTATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085144.11 ENSMUST00000149739.2 |
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| CDS CAA 90 bp | CATTGGGTTGTTTCAAAGGAGACACTTTGGAGCTGTCTTTTGGCTTaGAGTATATCCAGGAGCTCAGGACAAAAACTTTCTAATCTGTGT | + |
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Preference number: 6 (lower is better) Translates to: HWVVSKETLWSCLLA*SISRSSGQKLSNLC Trigger: ACACAGATTAGAAAGTTTTTGTCCTGAGCTCCTGGATATACTCAAAGCCAAAAGACAGCTCCAAAGTGTCTCCTTTGAAACAACCCAATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS CAA 90 bp | TTAGAGCATTGGGTTGTTTCAAAGGAGACACTTTGGAGCTGTCTTTaGGCTTTGAGTATATCCAGGAGCTCAGGACAAAAACTTTCTAAT | + |
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Preference number: 6 (lower is better) Translates to: LEHWVVSKETLWSCL*ALSISRSSGQKLSN Trigger: ATTAGAAAGTTTTTGTCCTGAGCTCCTGGATATACTCAAAGCCAAAAGACAGCTCCAAAGTGTCTCCTTTGAAACAACCCAATGCTCTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS TCA 72 bp | TTTCAAAGGAGACACTTTGGAGCTGTCTTTTGGCTTTaGGTATATCCAGGAGCTCAGGACAAAAACTTTCTA | + |
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Preference number: 6 (lower is better) Translates to: FQRRHFGAVFWL*VYPGAQDKNFL Trigger: TAGAAAGTTTTTGTCCTGAGCTCCTGGATATACTCAAAGCCAAAAGACAGCTCCAAAGTGTCTCCTTTGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000085144.11 |
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| CDS GCA 72 bp | ATAGCCTTCAAAGTCTCCAGGTTGCAATTATTTATCTaGTTTCCTAAAGAAAGGTATGGGAAGGGCCATTCA | + |
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Preference number: 6 (lower is better) Translates to: IAFKVSRLQLFI*FPKERYGKGHS Trigger: TGAATGGCCCTTCCCATACCTTTCTTTAGGAAAGCAGATAAATAATTGCAACCTGGAGACTTTGAAGGCTAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085144.11 ENSMUST00000105770.2 |
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| CDS GCA 72 bp | AGCTTTCTGCAGAATAAATTAATAGAATCTGTTCTCTaGTGGGCCCACTGCAACAAGTATGTGGTAGATTCA | + |
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Preference number: 6 (lower is better) Translates to: SFLQNKLIESVL*WAHCNKYVVDS Trigger: TGAATCTACCACATACTTGTTGCAGTGGGCCCAGCAGAGAACAGATTCTATTAATTTATTCTGCAGAAAGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085144.11 ENSMUST00000149739.2 |
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| CDS CCA 72 bp | TTTCTGCAGAATAAATTAATAGAATCTGTTCTCTGCTaGGCCCACTGCAACAAGTATGTGGTAGATTCATCA | + |
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Preference number: 6 (lower is better) Translates to: FLQNKLIESVLC*AHCNKYVVDSS Trigger: TGATGAATCTACCACATACTTGTTGCAGTGGGCCCAGCAGAGAACAGATTCTATTAATTTATTCTGCAGAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085144.11 ENSMUST00000149739.2 |
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| CDS CAA 72 bp | TCTAGTCCCTCAAGGATAGCCTTCAAAGTCTCCAGGTaGCAATTATTTATCTGCTTTCCTAAAGAAAGGTAT | + |
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Preference number: 6 (lower is better) Translates to: SSPSRIAFKVSR*QLFICFPKERY Trigger: ATACCTTTCTTTAGGAAAGCAGATAAATAATTGCAACCTGGAGACTTTGAAGGCTATCCTTGAGGGACTAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085144.11 ENSMUST00000105770.2 |
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| CDS CAA 72 bp | GCGTGTACAGTTTTGAAGATTTCTATCACTGAGGCTTaGGTTAAGCCTTCAATTACTAGCTTTCTGCAGAAT | + |
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Preference number: 6 (lower is better) Translates to: ACTVLKISITEA*VKPSITSFLQN Trigger: ATTCTGCAGAAAGCTAGTAATTGAAGGCTTAACCAAAGCCTCAGTGATAGAAATCTTCAAAACTGTACACGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085144.11 ENSMUST00000149739.2 |
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