Pregenerated sensors for PRAMEL24 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046435Ensembl transcript IDs: ENSMUST00000078695.5
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATGTCTGTATACTGTAGAACAGTATGTAAGGGGAGAACCAAAAGGTaGACGCAATCCACAGGAAGAATGAAACAGAGCCCTCCTATTCAA | + |
|
Preference number: 1 (lower is better) Translates to: MSVYCRTVCKGRTKR*TQSTGRMKQSPPIQ Trigger: TTGAATAGGAGGGCTCTGTTTCATTCTTCCTGTGGATTGCGTTCACCTTTTGGTTCTCCCCTTACATACTGTTCTACAGTATACAGACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| 3UTR-3UTR GCA 90 bp | CTGAAAGTGCTGGAAGGCAGCCCTACAATTTTCAGATATAGATGCTGTTCAAGGGAGTCACTTGAGACCTaGCTTCCATTTGTTAGAACC | + |
|
Preference number: 2 (lower is better) Translates to: LKVLEGSPTIFRYRCCSRESLET*LPFVRT Trigger: GGTTCTAACAAATGGAAGGCAGGTCTCAAGTGACTC...CCTTGAACAGCATCTATATCTGAAAATTGTAGGGCTGCCTTCCAGCACTTTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| 3UTR-3UTR GCA 90 bp | TTTATCCCCTTCCCAACTTCTATTGTTCCTCATACTCTGAAAGTGCTGGAAGGCATTTTCAGATATAGATaGTGTTCAAGGGTGTGTCTG | + |
|
Preference number: 2 (lower is better) Translates to: FIPFPTSIVPHTLKVLEGIFRYR*CSRVCL Trigger: CAGACACACCCTTGAACAGCATCTATATCTGAAAAT...GCCTTCCAGCACTTTCAGAGTATGAGGAACAATAGAAGTTGGGAAGGGGATAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| 3UTR TCA 72 bp | TACTGTAGAACAGTATGTAAGGGGAGAACCAAAAGGTaGACGCAATCCACAGGAAGAATGAAACAGAGCCCT | + |
|
Preference number: 3 (lower is better) Translates to: YCRTVCKGRTKR*TQSTGRMKQSP Trigger: AGGGCTCTGTTTCATTCTTCCTGTGGATTGCGTTCACCTTTTGGTTCTCCCCTTACATACTGTTCTACAGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| 3UTR-3UTR CAA 90 bp | TATAATGTCCTCTCTCTTTTATCCCCTTCCCAACTTCTATTGTTCCTCATACTCAGACCTGCCTTCCATTaGTTAGAACCTAGTAATGAC | + |
|
Preference number: 3 (lower is better) Translates to: YNVLSLLSPSQLLLFLILRPAFH*LEPSND Trigger: GTCATTACTAGGTTCTAACAAATGGAAGGCAGGTCT...GAGTATGAGGAACAATAGAAGTTGGGAAGGGGATAAAAGAGAGAGGACATTATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR TCA 90 bp | GGGGAGAACCAAAAGGTGAACGCAATCCACAGGAAGAATGAAACAGAGCCCTCCCCCCCTAGGATGGGATaGTTTCCCACTGGTTGGTTC | + |
|
Preference number: 4 (lower is better) Translates to: GENQKVNAIHRKNETEPSPPRMG*FPTGWF Trigger: GAACCAACCAGTGGGAAATCATCCCATCCTAGGGGG...GGAGGGCTCTGTTTCATTCTTCCTGTGGATTGCGTTCACCTTTTGGTTCTCCCC 53% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR CCA 90 bp | GGGGAGAACCAAAAGGTGAACGCAATCCACAGGAAGAATGAAACAGAGCCCTCCTCCCACAGGAAGGGTTaGGAAAGGCCATGCTACCAC | + |
|
Preference number: 4 (lower is better) Translates to: GENQKVNAIHRKNETEPSSHRKG*ERPCYH Trigger: GTGGTAGCATGGCCTTTCCCAACCCTTCCTGTGGGA...GGAGGGCTCTGTTTCATTCTTCCTGTGGATTGCGTTCACCTTTTGGTTCTCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR GCA 90 bp | AACCAAAAGGTGAACGCAATCCACAGGAAGAATGAAACAGAGCCCTCCTATTCACAGCAGGCTTCTTCTTaGCAGCTGCTGGAGTGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: NQKVNAIHRKNETEPSYSQQASS*QLLECW Trigger: CCAACACTCCAGCAGCTGGCAAGAAGAAGCCTGCTG...TGAATAGGAGGGCTCTGTTTCATTCTTCCTGTGGATTGCGTTCACCTTTTGGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR CCA 90 bp | CCCAACTTCTATTGTTCCTCATACTCTGAAAGTGCTGGAAGGCAGCCCTACAATCTTCAGAACATCCAGTaGGTCATAGGCAGGAATGGC | + |
|
Preference number: 4 (lower is better) Translates to: PNFYCSSYSESAGRQPYNLQNIQ*VIGRNG Trigger: GCCATTCCTGCCTATGACCCACTGGATGTTCTGAAG...ATTGTAGGGCTGCCTTCCAGCACTTTCAGAGTATGAGGAACAATAGAAGTTGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR CCA 90 bp | TTTATCCCCTTCCCAACTTCTATTGTTCCTCATACTCTGAAAGTGCTGGAAGGCTCCAGGTGTTTGAGCTaGTGGATGCTTGGACACTGG | + |
|
Preference number: 4 (lower is better) Translates to: FIPFPTSIVPHTLKVLEGSRCLS*WMLGHW Trigger: CCAGTGTCCAAGCATCCACCAGCTCAAACACCTGGA...GCCTTCCAGCACTTTCAGAGTATGAGGAACAATAGAAGTTGGGAAGGGGATAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR GCA 90 bp | CCCAACTTCTATTGTTCCTCATACTCTGAAAGTGCTGGAAGGCAGCCCTACAATCCACTGGTTGGTTCTTaGCAAAGACATCTTGAGAGC | + |
|
Preference number: 4 (lower is better) Translates to: PNFYCSSYSESAGRQPYNPLVGS*QRHLES Trigger: GCTCTCAAGATGTCTTTGGCAAGAACCAACCAGTGG...ATTGTAGGGCTGCCTTCCAGCACTTTCAGAGTATGAGGAACAATAGAAGTTGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR CCA 90 bp | TTTATCCCCTTCCCAACTTCTATTGTTCCTCATACTCTGAAAGTGCTGGAAGGCGGTCATAGGCAGGAATaGCCCCAAACTCCAACTTCT | + |
|
Preference number: 4 (lower is better) Translates to: FIPFPTSIVPHTLKVLEGGHRQE*PQTPTS Trigger: AGAAGTTGGAGTTTGGGGCCATTCCTGCCTATGACC...GCCTTCCAGCACTTTCAGAGTATGAGGAACAATAGAAGTTGGGAAGGGGATAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR CCA 90 bp | GTGAACGCAATCCACAGGAAGAATGAAACAGAGCCCTCCTATTCAAGTCCATTAGAGCTGGTGGATGCTTaGACACTGGGACAGATAACT | + |
|
Preference number: 4 (lower is better) Translates to: VNAIHRKNETEPSYSSPLELVDA*TLGQIT Trigger: AGTTATCTGTCCCAGTGTCCAAGCATCCACCAGCTC...TAATGGACTTGAATAGGAGGGCTCTGTTTCATTCTTCCTGTGGATTGCGTTCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR CCA 90 bp | AACCAAAAGGTGAACGCAATCCACAGGAAGAATGAAACAGAGCCCTCCTATTCATCGACTTCAGTGAGCTaGGAACATTGGCTCAGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: NQKVNAIHRKNETEPSYSSTSVS*EHWLSA Trigger: TGCACTGAGCCAATGTTCCCAGCTCACTGAAGTCGA...TGAATAGGAGGGCTCTGTTTCATTCTTCCTGTGGATTGCGTTCACCTTTTGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR TCA 90 bp | AACCAAAAGGTGAACGCAATCCACAGGAAGAATGAAACAGAGCCCTCCTATTCATTAAGGGTCTCCAGGTaGGGAATCTTCATCAGGGAT | + |
|
Preference number: 4 (lower is better) Translates to: NQKVNAIHRKNETEPSYSLRVSR*GIFIRD Trigger: ATCCCTGATGAAGATTCCTCACCTGGAGACCCTTAA...TGAATAGGAGGGCTCTGTTTCATTCTTCCTGTGGATTGCGTTCACCTTTTGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR GCA 90 bp | GATAAAATCAGACTGCAGGACATCCCCAATAAAGAGATAGAGCTTAACAGTGAAAGTGGTGGGAAGAGTTaGATGGGCAGGTTCGGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: DKIRLQDIPNKEIELNSESGGKS*MGRFGR Trigger: TCTGCCGAACCTGCCCATGCAACTCTTCCCACCACT...TTCACTGTTAAGCTCTATCTCTTTATTGGGGATGTCCTGCAGTCTGATTTTATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR GCA 90 bp | CTGAAAGTGCTGGAAGGCAGCCCTACAATTTTCAGATATAGATGCTGTTCAAGGAGGAGGTCACTGATTTaGCAGTCCATGAGCTTACAG | + |
|
Preference number: 4 (lower is better) Translates to: LKVLEGSPTIFRYRCCSRRRSLI*QSMSLQ Trigger: CTGTAAGCTCATGGACTGGCAAATCAGTGACCTCCT...CCTTGAACAGCATCTATATCTGAAAATTGTAGGGCTGCCTTCCAGCACTTTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR CCA 90 bp | AGACTGCAGGACATCCCCAATAAAGAGATAGAGCTTAACAGTGAAAAGAGTCTAAGGTGTTTGAGCTGGTaGATGCTTGGACACTGGGAC | + |
|
Preference number: 4 (lower is better) Translates to: RLQDIPNKEIELNSEKSLRCLSW*MLGHWD Trigger: GTCCCAGTGTCCAAGCATCCACCAGCTCAAACACCT...TAGACTCTTTTCACTGTTAAGCTCTATCTCTTTATTGGGGATGTCCTGCAGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR TCA 90 bp | AACCAAAAGGTGAACGCAATCCACAGGAAGAATGAAACAGAGCCCTCCTATTCAAAGGACGGCGGGACATaGGGGAAAGATTCATTTTTA | + |
|
Preference number: 4 (lower is better) Translates to: NQKVNAIHRKNETEPSYSKDGGT*GKDSFL Trigger: TAAAAATGAATCTTTCCCTCATGTCCCGCCGTCCTT...TGAATAGGAGGGCTCTGTTTCATTCTTCCTGTGGATTGCGTTCACCTTTTGGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR GCA 90 bp | TGTGTCTGTACTGTAGACATTAGGCTGAAAATAAGCTCATGGTTTTCCATCTCAGGAACATTGGCTCAGTaGAGGCAGGAGGTCACTGAT | + |
|
Preference number: 4 (lower is better) Translates to: CVCTVDIRLKISSWFSISGTLAQ*RQEVTD Trigger: ATCAGTGACCTCCTGCCTGCACTGAGCCAATGTTCC...TGAGATGGAAAACCATGAGCTTATTTTCAGCCTAATGTCTACAGTACAGACACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR CCA 90 bp | CTGAAAGTGCTGGAAGGCAGCCCTACAATTTTCAGATATAGATGCTGTTCAAGGTCTTCAGGCTGTCCATaGAAAAGAAGTTCTCCACAA | + |
|
Preference number: 4 (lower is better) Translates to: LKVLEGSPTIFRYRCCSRSSGCP*KRSSPQ Trigger: TTGTGGAGAACTTCTTTTCCATGGACAGCCTGAAGA...CCTTGAACAGCATCTATATCTGAAAATTGTAGGGCTGCCTTCCAGCACTTTCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR TCA 90 bp | TTCCCAACTTCTATTGTTCCTCATACTCTGAAAGTGCTGGAAGGCAGCCCTACACTTTGTAGGAATGGATaGCTTAAAATCAAGGTGACA | + |
|
Preference number: 4 (lower is better) Translates to: FPTSIVPHTLKVLEGSPTLCRNG*LKIKVT Trigger: TGTCACCTTGATTTTAAGTCATCCATTCCTACAAAG...TGTAGGGCTGCCTTCCAGCACTTTCAGAGTATGAGGAACAATAGAAGTTGGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR CCA 90 bp | CTGAAAGTGCTGGAAGGCAGCCCTACAATTTTCAGATATAGATGCTGTTCAAGGTTGAAAAGGAGTTTCTaGAGGTTTTTCATTTGGCCC | + |
|
Preference number: 4 (lower is better) Translates to: LKVLEGSPTIFRYRCCSRLKRSF*RFFIWP Trigger: GGGCCAAATGAAAAACCTCCAGAAACTCCTTTTCAA...CCTTGAACAGCATCTATATCTGAAAATTGTAGGGCTGCCTTCCAGCACTTTCAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR CCA 90 bp | TTTATCCCCTTCCCAACTTCTATTGTTCCTCATACTCTGAAAGTGCTGGAAGGCTTGCAAAAATCTGTCTaGAATAACACCATCACTGTC | + |
|
Preference number: 4 (lower is better) Translates to: FIPFPTSIVPHTLKVLEGLQKSV*NNTITV Trigger: GACAGTGATGGTGTTATTCCAGACAGATTTTTGCAA...GCCTTCCAGCACTTTCAGAGTATGAGGAACAATAGAAGTTGGGAAGGGGATAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR TCA 90 bp | AGACTGCAGGACATCCCCAATAAAGAGATAGAGCTTAACAGTGAAAAGAGTCTAATATGCAGATTTCCTTaGAAAGGAGTTTCTGGAGGT | + |
|
Preference number: 4 (lower is better) Translates to: RLQDIPNKEIELNSEKSLICRFP*KGVSGG Trigger: ACCTCCAGAAACTCCTTTTCAAGGAAATCTGCATAT...TAGACTCTTTTCACTGTTAAGCTCTATCTCTTTATTGGGGATGTCCTGCAGTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR CCA 90 bp | AGACTGCAGGACATCCCCAATAAAGAGATAGAGCTTAACAGTGAAAAGAGTCTATTTATTGCCAATTCCTaGATTGAGGCTGCATCACAA | + |
|
Preference number: 4 (lower is better) Translates to: RLQDIPNKEIELNSEKSLFIANS*IEAASQ Trigger: TTGTGATGCAGCCTCAATCCAGGAATTGGCAATAAA...TAGACTCTTTTCACTGTTAAGCTCTATCTCTTTATTGGGGATGTCCTGCAGTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR GCA 90 bp | ATACTCCATAAAAATATGTCTGTATACTGTAGAACAGTATGTAAGGGGAGAACCAGATGCTGGAGCTTATaGAGTTTGGAGAACTCGGAA | + |
|
Preference number: 4 (lower is better) Translates to: ILHKNMSVYCRTVCKGRTRCWSL*SLENSE Trigger: TTCCGAGTTCTCCAAACTGCATAAGCTCCAGCATCT...GGTTCTCCCCTTACATACTGTTCTACAGTATACAGACATATTTTTATGGAGTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR GCA 90 bp | TGTGTCTGTACTGTAGACATTAGGCTGAAAATAAGCTCATGGTTTTCCATCTCATTCAATTTTAATGTCTaGAGAGTAGCTGTCAGTCTT | + |
|
Preference number: 4 (lower is better) Translates to: CVCTVDIRLKISSWFSISFNFNV*RVAVSL Trigger: AAGACTGACAGCTACTCTGCAGACATTAAAATTGAA...TGAGATGGAAAACCATGAGCTTATTTTCAGCCTAATGTCTACAGTACAGACACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR CAA 90 bp | GGGGAGAACCAAAAGGTGAACGCAATCCACAGGAAGAATGAAACAGAGCCCTCCGAGTGGTGGGAAGAGTaGCATGGGCAGGTTCGGCAG | + |
|
Preference number: 5 (lower is better) Translates to: GENQKVNAIHRKNETEPSEWWEE*HGQVRQ Trigger: CTGCCGAACCTGCCCATGCAACTCTTCCCACCACTC...GGAGGGCTCTGTTTCATTCTTCCTGTGGATTGCGTTCACCTTTTGGTTCTCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS CCA 90 bp | AGAGTGGTGGGAAGAGTTGCATGGGCAGGTTCGGCAGAGCAGAGATaGTCAAGGCTTCATCTTTCAGCAGGCTTCTTCTTGCCAGCTGCT | + |
|
Preference number: 5 (lower is better) Translates to: RVVGRVAWAGSAEQR*SRLHLSAGFFLPAA Trigger: AGCAGCTGGCAAGAAGAAGCCTGCTGAAAGATGAAGCCTTGACCATCTCTGCTCTGCCGAACCTGCCCATGCAACTCTTCCCACCACTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR CAA 90 bp | GGGGAGAACCAAAAGGTGAACGCAATCCACAGGAAGAATGAAACAGAGCCCTCCATCCCACAGGAAGGGTaGGGAAAGGCCATGCTACCA | + |
|
Preference number: 5 (lower is better) Translates to: GENQKVNAIHRKNETEPSIPQEG*GKAMLP Trigger: TGGTAGCATGGCCTTTCCCAACCCTTCCTGTGGGAT...GGAGGGCTCTGTTTCATTCTTCCTGTGGATTGCGTTCACCTTTTGGTTCTCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR CAA 90 bp | CCCAACTTCTATTGTTCCTCATACTCTGAAAGTGCTGGAAGGCAGCCCTACAATCTCAGGTCCAGGTGTTaGAGCTGGTGGATGCTTGGA | + |
|
Preference number: 5 (lower is better) Translates to: PNFYCSSYSESAGRQPYNLRSRC*SWWMLG Trigger: TCCAAGCATCCACCAGCTCAAACACCTGGACCTGAG...ATTGTAGGGCTGCCTTCCAGCACTTTCAGAGTATGAGGAACAATAGAAGTTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS TCA 90 bp | CCTTCTCTAGGTCCCAAGGCCTATCCCAAGATATGCAGATTTCCTTaGAAAGGAGTTTCTGGAGGTTTTTCATTTGGCCCACACCAAGGG | + |
|
Preference number: 5 (lower is better) Translates to: PSLGPKAYPKICRFP*KGVSGGFSFGPHQG Trigger: CCCTTGGTGTGGGCCAAATGAAAAACCTCCAGAAACTCCTTTTCAAGGAAATCTGCATATCTTGGGATAGGCCTTGGGACCTAGAGAAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS CCA 90 bp | CTGCATCACAAAGCTTCAGAACATCCAGTGGGTCATAGGCAGGAATaGCCCCAAACTCCAACTTCTCACAGATCACCTGTATCCCATTTT | + |
|
Preference number: 5 (lower is better) Translates to: LHHKASEHPVGHRQE*PQTPTSHRSPVSHF Trigger: AAAATGGGATACAGGTGATCTGTGAGAAGTTGGAGTTTGGGGCCATTCCTGCCTATGACCCACTGGATGTTCTGAAGCTTTGTGATGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS TCA 90 bp | TGCAGAGTAGCTGTCAGTCTTTCTAGCAGGCTTTGTAGGAATGGATaGCTTAAAATCAAGGTGACACCACTCAGGTCCAGGTGTTTGAGC | + |
|
Preference number: 5 (lower is better) Translates to: CRVAVSLSSRLCRNG*LKIKVTPLRSRCLS Trigger: GCTCAAACACCTGGACCTGAGTGGTGTCACCTTGATTTTAAGTCATCCATTCCTACAAAGCCTGCTAGAAAGACTGACAGCTACTCTGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS CCA 90 bp | GATGCAAGGGTATATATATCCCAGCATGTGTTTATTGCCAATTCCTaGATTGAGGCTGCATCACAAAGCTTCAGAACATCCAGTGGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: DARVYISQHVFIANS*IEAASQSFRTSSGS Trigger: TGACCCACTGGATGTTCTGAAGCTTTGTGATGCAGCCTCAATCCAGGAATTGGCAATAAACACATGCTGGGATATATATACCCTTGCATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS CCA 90 bp | CTTGAGTGTGTCTATAAGCTCAGAACAAAGTTGCAAAAATCTGTCTaGAATAACACCATCACTGTCATCATAGACTTCATCAGGGGCAGG | + |
|
Preference number: 5 (lower is better) Translates to: LECVYKLRTKLQKSV*NNTITVIIDFIRGR Trigger: CCTGCCCCTGATGAAGTCTATGATGACAGTGATGGTGTTATTCCAGACAGATTTTTGCAACTTTGTTCTGAGCTTATAGACACACTCAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR CAA 90 bp | GATAAAATCAGACTGCAGGACATCCCCAATAAAGAGATAGAGCTTAACAGTGAACCCAGCATGTGTTTATaGCCAATTCCTGGATTGAGG | + |
|
Preference number: 5 (lower is better) Translates to: DKIRLQDIPNKEIELNSEPSMCL*PIPGLR Trigger: CCTCAATCCAGGAATTGGCAATAAACACATGCTGGG...TTCACTGTTAAGCTCTATCTCTTTATTGGGGATGTCCTGCAGTCTGATTTTATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR CAA 90 bp | AACCAAAAGGTGAACGCAATCCACAGGAAGAATGAAACAGAGCCCTCCTATTCAAAGCTCAGAACAAAGTaGCAAAAATCTGTCTGGAAT | + |
|
Preference number: 5 (lower is better) Translates to: NQKVNAIHRKNETEPSYSKLRTK*QKSVWN Trigger: ATTCCAGACAGATTTTTGCAACTTTGTTCTGAGCTT...TGAATAGGAGGGCTCTGTTTCATTCTTCCTGTGGATTGCGTTCACCTTTTGGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS-3UTR CAA 90 bp | GATAAAATCAGACTGCAGGACATCCCCAATAAAGAGATAGAGCTTAACAGTGAAAAATATTTTAGGTATTaGGAAGGACGGCGGGACATG | + |
|
Preference number: 5 (lower is better) Translates to: DKIRLQDIPNKEIELNSEKYFRY*EGRRDM Trigger: CATGTCCCGCCGTCCTTCCAAATACCTAAAATATTT...TTCACTGTTAAGCTCTATCTCTTTATTGGGGATGTCCTGCAGTCTGATTTTATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS CAA 72 bp | GGGGCAGGATACTTCTCCAGGGTCAGCTGTGTGAGGTaGGCAGTGTTCTGTAGCAACTTCTTCAGGCTGTCC | + |
|
Preference number: 6 (lower is better) Translates to: GAGYFSRVSCVR*AVFCSNFFRLS Trigger: GGACAGCCTGAAGAAGTTGCTACAGAACACTGCCAACCTCACACAGCTGACCCTGGAGAAGTATCCTGCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS TCA 72 bp | CATCAGGGGCAGGATACTTCTCCAGGGTCAGCTGTGTaGGGTTGGCAGTGTTCTGTAGCAACTTCTTCAGGC | + |
|
Preference number: 6 (lower is better) Translates to: HQGQDTSPGSAV*GWQCSVATSSG Trigger: GCCTGAAGAAGTTGCTACAGAACACTGCCAACCTCACACAGCTGACCCTGGAGAAGTATCCTGCCCCTGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS GCA 72 bp | GATGGTCAAGGCTTCATCTTTCAGCAGGCTTCTTCTTaGCAGCTGCTGGAGTGTTGGTGGGTCCTTGAAGCT | + |
|
Preference number: 6 (lower is better) Translates to: DGQGFIFQQASS*QLLECWWVLEA Trigger: AGCTTCAAGGACCCACCAACACTCCAGCAGCTGGCAAGAAGAAGCCTGCTGAAAGATGAAGCCTTGACCATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS GCA 72 bp | TTGGTGAATGCATCCTTGAAGAGTGGTGGGAAGAGTTaGATGGGCAGGTTCGGCAGAGCAGAGATGGTCAAG | + |
|
Preference number: 6 (lower is better) Translates to: LVNASLKSGGKS*MGRFGRAEMVK Trigger: CTTGACCATCTCTGCTCTGCCGAACCTGCCCATGCAACTCTTCCCACCACTCTTCAAGGATGCATTCACCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS CCA 72 bp | GGAAGAGTTGCATGGGCAGGTTCGGCAGAGCAGAGATaGTCAAGGCTTCATCTTTCAGCAGGCTTCTTCTTG | + |
|
Preference number: 6 (lower is better) Translates to: GRVAWAGSAEQR*SRLHLSAGFFL Trigger: CAAGAAGAAGCCTGCTGAAAGATGAAGCCTTGACCATCTCTGCTCTGCCGAACCTGCCCATGCAACTCTTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS TCA 72 bp | GCTGTCAGTCTTTCTAGCAGGCTTTGTAGGAATGGATaGCTTAAAATCAAGGTGACACCACTCAGGTCCAGG | + |
|
Preference number: 6 (lower is better) Translates to: AVSLSSRLCRNG*LKIKVTPLRSR Trigger: CCTGGACCTGAGTGGTGTCACCTTGATTTTAAGTCATCCATTCCTACAAAGCCTGCTAGAAAGACTGACAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS GCA 72 bp | CCCCTAGGATGGGATGATTTCCCACTGGTTGGTTCTTaGCAAAGACATCTTGAGAGCAGACTTCATGAAGTA | + |
|
Preference number: 6 (lower is better) Translates to: PLGWDDFPLVGS*QRHLESRLHEV Trigger: TACTTCATGAAGTCTGCTCTCAAGATGTCTTTGGCAAGAACCAACCAGTGGGAAATCATCCCATCCTAGGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS TCA 72 bp | GGTCCCAAGGCCTATCCCAAGATATGCAGATTTCCTTaGAAAGGAGTTTCTGGAGGTTTTTCATTTGGCCCA | + |
|
Preference number: 6 (lower is better) Translates to: GPKAYPKICRFP*KGVSGGFSFGP Trigger: TGGGCCAAATGAAAAACCTCCAGAAACTCCTTTTCAAGGAAATCTGCATATCTTGGGATAGGCCTTGGGACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS CAA 72 bp | CTTAGTATGTTAGGATGTTTGTTGGTGAATGCATCCTaGAAGAGTGGTGGGAAGAGTTGCATGGGCAGGTTC | + |
|
Preference number: 6 (lower is better) Translates to: LSMLGCLLVNAS*KSGGKSCMGRF Trigger: GAACCTGCCCATGCAACTCTTCCCACCACTCTTCAAGGATGCATTCACCAACAAACATCCTAACATACTAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS CAA 72 bp | GCTACCACCATCTGCCTTAGTATGTTAGGATGTTTGTaGGTGAATGCATCCTTGAAGAGTGGTGGGAAGAGT | + |
|
Preference number: 6 (lower is better) Translates to: ATTICLSMLGCL*VNASLKSGGKS Trigger: ACTCTTCCCACCACTCTTCAAGGATGCATTCACCAACAAACATCCTAACATACTAAGGCAGATGGTGGTAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS CAA 72 bp | CTCTCCTTGGCCCACCGATACAAATATTTTAGGTATTaGGAAGGACGGCGGGACATGAGGGAAAGATTCATT | + |
|
Preference number: 6 (lower is better) Translates to: LSLAHRYKYFRY*EGRRDMRERFI Trigger: AATGAATCTTTCCCTCATGTCCCGCCGTCCTTCCAAATACCTAAAATATTTGTATCGGTGGGCCAAGGAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS TCA 72 bp | TATATCCCAGCATGTGTTTATTGCCAATTCCTGGATTaGGGCTGCATCACAAAGCTTCAGAACATCCAGTGG | + |
|
Preference number: 6 (lower is better) Translates to: YIPACVYCQFLD*GCITKLQNIQW Trigger: CCACTGGATGTTCTGAAGCTTTGTGATGCAGCCTCAATCCAGGAATTGGCAATAAACACATGCTGGGATATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS CAA 90 bp | CAAGGGCTAGTGATGCAAGGGTATATATATCCCAGCATGTGTTTATaGCCAATTCCTGGATTGAGGCTGCATCACAAAGCTTCAGAACAT | + |
|
Preference number: 6 (lower is better) Translates to: QGLVMQGYIYPSMCL*PIPGLRLHHKASEH Trigger: ATGTTCTGAAGCTTTGTGATGCAGCCTCAATCCAGGAATTGGCAATAAACACATGCTGGGATATATATACCCTTGCATCACTAGCCCTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS CAA 72 bp | GTGATGCAAGGGTATATATATCCCAGCATGTGTTTATaGCCAATTCCTGGATTGAGGCTGCATCACAAAGCT | + |
|
Preference number: 6 (lower is better) Translates to: VMQGYIYPSMCL*PIPGLRLHHKA Trigger: AGCTTTGTGATGCAGCCTCAATCCAGGAATTGGCAATAAACACATGCTGGGATATATATACCCTTGCATCAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||
| CDS CCA 72 bp | GTATATATATCCCAGCATGTGTTTATTGCCAATTCCTaGATTGAGGCTGCATCACAAAGCTTCAGAACATCC | + |
|
Preference number: 6 (lower is better) Translates to: VYISQHVFIANS*IEAASQSFRTS Trigger: GGATGTTCTGAAGCTTTGTGATGCAGCCTCAATCCAGGAATTGGCAATAAACACATGCTGGGATATATATAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078695.5 |
||