RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRAMEL22 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078513

Ensembl transcript IDs: ENSMUST00000105771.2

Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp TCTATTGTAACACACCCAAACTACAAAAATACTAGAGAAGAGTGCTaGACACTTTTAGCAGATGCTACATTTATTCACCAGCTCAGAGGA +
Preference number: 2 (lower is better)
Translates to: SIVTHPNYKNTREEC*TLLADATFIHQLRG
Trigger: TCCTCTGAGCTGGTGAATAAATGTAGCATCTGCTAAAAGTGTCAAGCACTCTTCTCTAGTATTTTTGTAGTTTGGGTGTGTTACAATAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
3UTR GCA 72 bp GATGCTACATTTATTCACCAGCTCAGAGGAAGATCTTaGCTTTTAATTGTGTATCTCAAACCTTTAGGTGGT +
Preference number: 3 (lower is better)
Translates to: DATFIHQLRGRS*LLIVYLKPLGG
Trigger: ACCACCTAAAGGTTTGAGATACACAATTAAAAGGCAAGATCTTCCTCTGAGCTGGTGAATAAATGTAGCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
3UTR CCA 72 bp ATCTTGCCTTTTAATTGTGTATCTCAAACCTTTAGGTaGTTGACATATCCATGCTCCTTTAAGCAAGGGAAA +
Preference number: 3 (lower is better)
Translates to: ILPFNCVSQTFR*LTYPCSFKQGK
Trigger: TTTCCCTTGCTTAAAGGAGCATGGATATGTCAACCACCTAAAGGTTTGAGATACACAATTAAAAGGCAAGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS-3UTR TCA 90 bp TGCTACATTTATTCACCAGCTCAGAGGAAGATCTTGCCTTTTAATTGTGTATCTGCTGTCGTTTGGCCCTaGGCATATCCAGGACTTCAG +
Preference number: 4 (lower is better)
Translates to: CYIYSPAQRKILPFNCVSAVVWP*AYPGLQ
Trigger: CTGAAGTCCTGGATATGCTCAGGGCCAAACGACAGC...AGATACACAATTAAAAGGCAAGATCTTCCTCTGAGCTGGTGAATAAATGTAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS-3UTR TCA 90 bp ACACTTTTAGCAGATGCTACATTTATTCACCAGCTCAGAGGAAGATCTTGCCTTGATGCTTCTGTTCCATaGACTCTGATAAACCTTCAA +
Preference number: 4 (lower is better)
Translates to: TLLADATFIHQLRGRSCLDASVP*TLINLQ
Trigger: TTGAAGGTTTATCAGAGTTCATGGAACAGAAGCATC...AAGGCAAGATCTTCCTCTGAGCTGGTGAATAAATGTAGCATCTGCTAAAAGTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS-3UTR TCA 90 bp CAGCTCAGAGGAAGATCTTGCCTTTTAATTGTGTATCTCAAACCTTTAGGTGGTGGAAATGTGGGAAGTTaGGAAACCAATGTGATCATT +
Preference number: 4 (lower is better)
Translates to: QLRGRSCLLIVYLKPLGGGNVGS*ETNVII
Trigger: AATGATCACATTGGTTTCTCAACTTCCCACATTTCC...ACCACCTAAAGGTTTGAGATACACAATTAAAAGGCAAGATCTTCCTCTGAGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS-3UTR CCA 90 bp TTTAGCAGATGCTACATTTATTCACCAGCTCAGAGGAAGATCTTGCCTTTTAATTGCTATAGAAAGGTATaGAAAGGGCCACTCAGGTAT +
Preference number: 4 (lower is better)
Translates to: FSRCYIYSPAQRKILPFNCYRKV*KGPLRY
Trigger: ATACCTGAGTGGCCCTTTCCATACCTTTCTATAGCA...ATTAAAAGGCAAGATCTTCCTCTGAGCTGGTGAATAAATGTAGCATCTGCTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS-3UTR CCA 90 bp TGCTACATTTATTCACCAGCTCAGAGGAAGATCTTGCCTTTTAATTGTGTATCTTCAGCTGTGTCAACTTaGATGTGTGCTGTAGAAGTT +
Preference number: 4 (lower is better)
Translates to: CYIYSPAQRKILPFNCVSSAVST*MCAVEV
Trigger: AACTTCTACAGCACACATCCAAGTTGACACAGCTGA...AGATACACAATTAAAAGGCAAGATCTTCCTCTGAGCTGGTGAATAAATGTAGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
3UTR CAA 72 bp AGATGCTACATTTATTCACCAGCTCAGAGGAAGATCTaGCCTTTTAATTGTGTATCTCAAACCTTTAGGTGG +
Preference number: 4 (lower is better)
Translates to: RCYIYSPAQRKI*PFNCVSQTFRW
Trigger: CCACCTAAAGGTTTGAGATACACAATTAAAAGGCAAGATCTTCCTCTGAGCTGGTGAATAAATGTAGCATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS-3UTR GCA 90 bp TGCTACATTTATTCACCAGCTCAGAGGAAGATCTTGCCTTTTAATTGTGTATCTTCCACACAATTAGGATaGTTCTGTTCCATGAACTCT +
Preference number: 4 (lower is better)
Translates to: CYIYSPAQRKILPFNCVSSTQLG*FCSMNS
Trigger: AGAGTTCATGGAACAGAAGCATCCTAATTGTGTGGA...AGATACACAATTAAAAGGCAAGATCTTCCTCTGAGCTGGTGAATAAATGTAGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS-3UTR CCA 90 bp CAGCTCAGAGGAAGATCTTGCCTTTTAATTGTGTATCTCAAACCTTTAGGTGGTAGATTTCTATCACTGTaGCTTTGGTTAAGCTTTGAA +
Preference number: 4 (lower is better)
Translates to: QLRGRSCLLIVYLKPLGGRFLSL*LWLSFE
Trigger: TTCAAAGCTTAACCAAAGCCACAGTGATAGAAATCT...ACCACCTAAAGGTTTGAGATACACAATTAAAAGGCAAGATCTTCCTCTGAGCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
3UTR CAA 72 bp TTGCCTTTTAATTGTGTATCTCAAACCTTTAGGTGGTaGACATATCCATGCTCCTTTAAGCAAGGGAAATTC +
Preference number: 4 (lower is better)
Translates to: LPFNCVSQTFRW*TYPCSFKQGKF
Trigger: GAATTTCCCTTGCTTAAAGGAGCATGGATATGTCAACCACCTAAAGGTTTGAGATACACAATTAAAAGGCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS TCA 90 bp GCCACTCAGGTATCATGGCTTTCAAGATCTTTGTATAACCAAAAATaGAGGCCTCCTCAAACAACACTGGGAACAGCATATTGGGCAGGT +
Preference number: 5 (lower is better)
Translates to: ATQVSWLSRSLYNQK*RPPQTTLGTAYWAG
Trigger: ACCTGCCCAATATGCTGTTCCCAGTGTTGTTTGAGGAGGCCTTCATTTTTGGTTATACAAAGATCTTGAAAGCCATGATACCTGAGTGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS CCA 90 bp ACTCTCCAGGTTGCAGTTGTCTATCAGCACTGCTATAGAAAGGTATaGAAAGGGCCACTCAGGTATCATGGCTTTCAAGATCTTTGTATA +
Preference number: 5 (lower is better)
Translates to: TLQVAVVYQHCYRKV*KGPLRYHGFQDLCI
Trigger: TATACAAAGATCTTGAAAGCCATGATACCTGAGTGGCCCTTTCCATACCTTTCTATAGCAGTGCTGATAGACAACTGCAACCTGGAGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS-3UTR CAA 90 bp TTGACACTTTTAGCAGATGCTACATTTATTCACCAGCTCAGAGGAAGATCTTGCTTCAAACTCTCCAGGTaGCAGTTGTCTATCAGCACT +
Preference number: 5 (lower is better)
Translates to: LTLLADATFIHQLRGRSCFKLSR*QLSIST
Trigger: AGTGCTGATAGACAACTGCAACCTGGAGAGTTTGAA...GCAAGATCTTCCTCTGAGCTGGTGAATAAATGTAGCATCTGCTAAAAGTGTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS-3UTR CAA 90 bp TTGACACTTTTAGCAGATGCTACATTTATTCACCAGCTCAGAGGAAGATCTTGCATATTGGGCAGGTCCTaGAGAGAAGAAATGGCTAAA +
Preference number: 5 (lower is better)
Translates to: LTLLADATFIHQLRGRSCILGRS*REEMAK
Trigger: TTTAGCCATTTCTTCTCTCAAGGACCTGCCCAATAT...GCAAGATCTTCCTCTGAGCTGGTGAATAAATGTAGCATCTGCTAAAAGTGTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS-3UTR CAA 90 bp CAAAGAAGAACAATATCCTCATGGAATTGTGTTTCTATTGTAACACACCCAAACACTGGGAACAGCATATaGGGCAGGTCCTTGAGAGAA +
Preference number: 5 (lower is better)
Translates to: QRRTISSWNCVSIVTHPNTGNSI*GRSLRE
Trigger: TTCTCTCAAGGACCTGCCCAATATGCTGTTCCCAGT...GTTTGGGTGTGTTACAATAGAAACACAATTCCATGAGGATATTGTTCTTCTTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS-3UTR CAA 90 bp TTTAGCAGATGCTACATTTATTCACCAGCTCAGAGGAAGATCTTGCCTTTTAATCTCAGCTGTGTCAACTaGGATGTGTGCTGTAGAAGT +
Preference number: 5 (lower is better)
Translates to: FSRCYIYSPAQRKILPFNLSCVN*DVCCRS
Trigger: ACTTCTACAGCACACATCCAAGTTGACACAGCTGAG...ATTAAAAGGCAAGATCTTCCTCTGAGCTGGTGAATAAATGTAGCATCTGCTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS CCA 90 bp CTTTGGTTAAGCTTTGAATTACCAGCTTCCTACAGAATAGATGAATaGAATCTTTTCTTTGCTGGGTCCACTCCAACAAGTATGTGTCAG +
Preference number: 5 (lower is better)
Translates to: LWLSFELPASYRIDE*NLFFAGSTPTSMCQ
Trigger: CTGACACATACTTGTTGGAGTGGACCCAGCAAAGAAAAGATTCCATTCATCTATTCTGTAGGAAGCTGGTAATTCAAAGCTTAACCAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS-3UTR CAA 90 bp TTGCCTTTTAATTGTGTATCTCAAACCTTTAGGTGGTTGACATATCCATGCTCCAATGGAATCTTTTCTTaGCTGGGTCCACTCCAACAA +
Preference number: 5 (lower is better)
Translates to: LPFNCVSQTFRWLTYPCSNGIFS*LGPLQQ
Trigger: TTGTTGGAGTGGACCCAGCAAAGAAAAGATTCCATT...GGAGCATGGATATGTCAACCACCTAAAGGTTTGAGATACACAATTAAAAGGCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS-3UTR CAA 90 bp TTTAGCAGATGCTACATTTATTCACCAGCTCAGAGGAAGATCTTGCCTTTTAATTGGGTTGTAACAAAGTaGATATCCTTGGGCTGTCGT +
Preference number: 5 (lower is better)
Translates to: FSRCYIYSPAQRKILPFNWVVTK*ISLGCR
Trigger: ACGACAGCCCAAGGATATCAACTTTGTTACAACCCA...ATTAAAAGGCAAGATCTTCCTCTGAGCTGGTGAATAAATGTAGCATCTGCTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS GCA 90 bp AGTTCAGTTGTTACCTTCAATTCTTTCTTCTCCACACAATTAGGATaGTTCTGTTCCATGAACTCTGATAAACCTTCAACTTCATGGGAT +
Preference number: 5 (lower is better)
Translates to: SSVVTFNSFFSTQLG*FCSMNSDKPSTSWD
Trigger: ATCCCATGAAGTTGAAGGTTTATCAGAGTTCATGGAACAGAAGCATCCTAATTGTGTGGAGAAGAAAGAATTGAAGGTAACAACTGAACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS-3UTR CAA 90 bp TGCTACATTTATTCACCAGCTCAGAGGAAGATCTTGCCTTTTAATTGTGTATCTTCATTTTCCTGGAAATaGACATCTGTGAGGTGGAAA +
Preference number: 5 (lower is better)
Translates to: CYIYSPAQRKILPFNCVSSFSWK*TSVRWK
Trigger: TTTCCACCTCACAGATGTCAATTTCCAGGAAAATGA...AGATACACAATTAAAAGGCAAGATCTTCCTCTGAGCTGGTGAATAAATGTAGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS-3UTR CAA 90 bp TTGCCTTTTAATTGTGTATCTCAAACCTTTAGGTGGTTGACATATCCATGCTCCACCACACTTAGAACATaGGGTTGTAACAAAGTTGAT +
Preference number: 5 (lower is better)
Translates to: LPFNCVSQTFRWLTYPCSTTLRT*GCNKVD
Trigger: ATCAACTTTGTTACAACCCAATGTTCTAAGTGTGGT...GGAGCATGGATATGTCAACCACCTAAAGGTTTGAGATACACAATTAAAAGGCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS CCA 72 bp GGGCGGGGTACATCTCATAGCTCAGCTGTGTCAACTTaGATGTGTGCTGTAGAAGTTGTTTTAGGGACAGCA +
Preference number: 6 (lower is better)
Translates to: GRGTSHSSAVST*MCAVEVVLGTA
Trigger: TGCTGTCCCTAAAACAACTTCTACAGCACACATCCAAGTTGACACAGCTGAGCTATGAGATGTACCCCGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS GCA 72 bp CTTCAAACTCTCCAGGTTGCAGTTGTCTATCAGCACTaGTATAGAAAGGTATGGAAAGGGCCACTCAGGTAT +
Preference number: 6 (lower is better)
Translates to: LQTLQVAVVYQH*YRKVWKGPLRY
Trigger: ATACCTGAGTGGCCCTTTCCATACCTTTCTATAGCAGTGCTGATAGACAACTGCAACCTGGAGAGTTTGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS CAA 72 bp TGGGTTGTAACAAAGTTGATATCCTTGGGCTGTCGTTaGGCCCTGAGCATATCCAGGACTTCAGGACAAAAT +
Preference number: 6 (lower is better)
Translates to: WVVTKLISLGCR*ALSISRTSGQN
Trigger: ATTTTGTCCTGAAGTCCTGGATATGCTCAGGGCCAAACGACAGCCCAAGGATATCAACTTTGTTACAACCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS CAA 90 bp AGAAGTATATCTAGTCCCTCAAGAACAGCCTTCAAACTCTCCAGGTaGCAGTTGTCTATCAGCACTGCTATAGAAAGGTATGGAAAGGGC +
Preference number: 6 (lower is better)
Translates to: RSISSPSRTAFKLSR*QLSISTAIERYGKG
Trigger: GCCCTTTCCATACCTTTCTATAGCAGTGCTGATAGACAACTGCAACCTGGAGAGTTTGAAGGCTGTTCTTGAGGGACTAGATATACTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS CCA 72 bp GTTGCAGTTGTCTATCAGCACTGCTATAGAAAGGTATaGAAAGGGCCACTCAGGTATCATGGCTTTCAAGAT +
Preference number: 6 (lower is better)
Translates to: VAVVYQHCYRKV*KGPLRYHGFQD
Trigger: ATCTTGAAAGCCATGATACCTGAGTGGCCCTTTCCATACCTTTCTATAGCAGTGCTGATAGACAACTGCAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS TCA 72 bp CTCCAACTGATCTCTTTGAGTTTGCACCTACTGGAGTaGACCTTTTGTGCAAGAAGTATATCTAGTCCCTCA +
Preference number: 6 (lower is better)
Translates to: LQLISLSLHLLE*TFCARSISSPS
Trigger: TGAGGGACTAGATATACTTCTTGCACAAAAGGTTCACTCCAGTAGGTGCAAACTCAAAGAGATCAGTTGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS CAA 72 bp TATATACCACACTTAGAACATTGGGTTGTAACAAAGTaGATATCCTTGGGCTGTCGTTTGGCCCTGAGCATA +
Preference number: 6 (lower is better)
Translates to: YIPHLEHWVVTK*ISLGCRLALSI
Trigger: TATGCTCAGGGCCAAACGACAGCCCAAGGATATCAACTTTGTTACAACCCAATGTTCTAAGTGTGGTATATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS TCA 72 bp GTATCATGGCTTTCAAGATCTTTGTATAACCAAAAATaGAGGCCTCCTCAAACAACACTGGGAACAGCATAT +
Preference number: 6 (lower is better)
Translates to: VSWLSRSLYNQK*RPPQTTLGTAY
Trigger: ATATGCTGTTCCCAGTGTTGTTTGAGGAGGCCTTCATTTTTGGTTATACAAAGATCTTGAAAGCCATGATAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2
CDS GCA 72 bp GTTACCTTCAATTCTTTCTTCTCCACACAATTAGGATaGTTCTGTTCCATGAACTCTGATAAACCTTCAACT +
Preference number: 6 (lower is better)
Translates to: VTFNSFFSTQLG*FCSMNSDKPST
Trigger: AGTTGAAGGTTTATCAGAGTTCATGGAACAGAAGCATCCTAATTGTGTGGAGAAGAAAGAATTGAAGGTAAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105771.2