Pregenerated sensors for PRAMEL20 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070618Ensembl transcript IDs: ENSMUST00000105774.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGAGAACACACCGTTCCGATCTATTCCTGGACAAATCCACATTTTaGAATGCACAACTGTATGATTCCATTAGTCATTTCTCCTCACAC | + |
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Preference number: 1 (lower is better) Translates to: ERTHRSDLFLDKSTF*NAQLYDSISHFSSH Trigger: GTGTGAGGAGAAATGACTAATGGAATCATACAGTTGTGCATTTCAAAATGTGGATTTGTCCAGGAATAGATCGGAACGGTGTGTTCTCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| 3UTR-3UTR TCA 90 bp | AACACAATGGCTAGGTTCAGGAATCATGAACAAAATAGAGATCCCCACTGGACAAGGTTGCCTCCAAGCTaGGCATGGTGGCATTTATCA | + |
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Preference number: 2 (lower is better) Translates to: NTMARFRNHEQNRDPHWTRLPPS*AWWHLS Trigger: TGATAAATGCCACCATGCTCAGCTTGGAGGCAACCT...TGTCCAGTGGGGATCTCTATTTTGTTCATGATTCCTGAACCTAGCCATTGTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| 3UTR CAA 90 bp | GTCCACTCTAAAGATGTCACAGTCAGCCACTCTGTCTCTAATACATaGATCAATGTCAGAAGACATGTGTTCAGGAACACCTTGATCGTA | + |
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Preference number: 2 (lower is better) Translates to: VHSKDVTVSHSVSNT*INVRRHVFRNTLIV Trigger: TACGATCAAGGTGTTCCTGAACACATGTCTTCTGACATTGATCAATGTATTAGAGACAGAGTGGCTGACTGTGACATCTTTAGAGTGGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| 3UTR CAA 90 bp | ATCAATGTCAGAAGACATGTGTTCAGGAACACCTTGATCGTAGACTaGTCCTTAGACTTTCATTTCTCAGTTACCAAACGAATCCTCCTC | + |
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Preference number: 2 (lower is better) Translates to: INVRRHVFRNTLIVD*SLDFHFSVTKRILL Trigger: GAGGAGGATTCGTTTGGTAACTGAGAAATGAAAGTCTAAGGACAAGTCTACGATCAAGGTGTTCCTGAACACATGTCTTCTGACATTGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| 3UTR CAA 90 bp | TCTAATACATTGATCAATGTCAGAAGACATGTGTTCAGGAACACCTaGATCGTAGACTTGTCCTTAGACTTTCATTTCTCAGTTACCAAA | + |
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Preference number: 2 (lower is better) Translates to: SNTLINVRRHVFRNT*IVDLSLDFHFSVTK Trigger: TTTGGTAACTGAGAAATGAAAGTCTAAGGACAAGTCTACGATCAAGGTGTTCCTGAACACATGTCTTCTGACATTGATCAATGTATTAGA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| 3UTR-3UTR CAA 90 bp | AACACAATGGCTAGGTTCAGGAATCATGAACAAAATAGAGATCCCCACTGGACAACCTTGATCGTAGACTaGTCCTTAGACTTTCATTTC | + |
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Preference number: 3 (lower is better) Translates to: NTMARFRNHEQNRDPHWTTLIVD*SLDFHF Trigger: GAAATGAAAGTCTAAGGACAAGTCTACGATCAAGGT...TGTCCAGTGGGGATCTCTATTTTGTTCATGATTCCTGAACCTAGCCATTGTGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS-3UTR GCA 90 bp | TCCTTCAGAGAGAGAACACACCGTTCCGATCTATTCCTGGACAAATCCACATTTAGGGACGTTCATCAGTaGCCCCACAGGGAGGCAAGG | + |
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Preference number: 4 (lower is better) Translates to: SFRERTHRSDLFLDKSTFRDVHQ*PHREAR Trigger: CCTTGCCTCCCTGTGGGGGCACTGATGAACGTCCCT...AAATGTGGATTTGTCCAGGAATAGATCGGAACGGTGTGTTCTCTCTCTGAAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS-3UTR TCA 90 bp | AACACAATGGCTAGGTTCAGGAATCATGAACAAAATAGAGATCCCCACTGGACACATGCCAGTGTGGACTaGGTCCAGCCTATATGCAAT | + |
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Preference number: 4 (lower is better) Translates to: NTMARFRNHEQNRDPHWTHASVD*VQPICN Trigger: ATTGCATATAGGCTGGACTCAGTCCACACTGGCATG...TGTCCAGTGGGGATCTCTATTTTGTTCATGATTCCTGAACCTAGCCATTGTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS-3UTR TCA 90 bp | TCCTTCAGAGAGAGAACACACCGTTCCGATCTATTCCTGGACAAATCCACATTTGATGCCGGAGACTGTTaGGTTTGGAGAACTGAGAAA | + |
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Preference number: 4 (lower is better) Translates to: SFRERTHRSDLFLDKSTFDAGDC*VWRTEK Trigger: TTTCTCAGTTCTCCAAACTCAACAGTCTCCGGCATC...AAATGTGGATTTGTCCAGGAATAGATCGGAACGGTGTGTTCTCTCTCTGAAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS-3UTR CCA 90 bp | GCTAGGTTCAGGAATCATGAACAAAATAGAGATCCCCACTGGACATTTATAATGGGCTGCCTTGAAGAGTaGTGGATACAACTCCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: ARFRNHEQNRDPHWTFIMGCLEE*WIQLPG Trigger: CCCAGGGAGTTGTATCCACCACTCTTCAAGGCAGCC...CATTATAAATGTCCAGTGGGGATCTCTATTTTGTTCATGATTCCTGAACCTAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS-3UTR CCA 90 bp | TCCTTCAGAGAGAGAACACACCGTTCCGATCTATTCCTGGACAAATCCACATTTTCGTTAGGACAGGCATaGAGATGTCATTGTCACAGA | + |
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Preference number: 4 (lower is better) Translates to: SFRERTHRSDLFLDKSTFSLGQA*RCHCHR Trigger: TCTGTGACAATGACATCTCCATGCCTGTCCTAACGA...AAATGTGGATTTGTCCAGGAATAGATCGGAACGGTGTGTTCTCTCTCTGAAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS-3UTR TCA 90 bp | AACACAATGGCTAGGTTCAGGAATCATGAACAAAATAGAGATCCCCACTGGACATTCCTCTTTCTTGGGTaGAATTTTCCTGTCAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: NTMARFRNHEQNRDPHWTFLFLG*NFPVSC Trigger: GCAGCTGACAGGAAAATTTCACCCAAGAAAGAGGAA...TGTCCAGTGGGGATCTCTATTTTGTTCATGATTCCTGAACCTAGCCATTGTGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS-3UTR CCA 90 bp | GCTAATATGACATTGTTAGGTAGAAAGAAAGAGAGGAAGAATATCCTTCAGAGAGTGGATACAACTCCCTaGGCAGCTCCTGCAGAGCAT | + |
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Preference number: 4 (lower is better) Translates to: ANMTLLGRKKERKNILQRVDTTP*AAPAEH Trigger: ATGCTCTGCAGGAGCTGCCCAGGGAGTTGTATCCAC...TCTCTGAAGGATATTCTTCCTCTCTTTCTTTCTACCTAACAATGTCATATTAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS-3UTR CCA 90 bp | CTGTATGATTCCATTAGTCATTTCTCCTCACACGTCCACTCTAAAGATGTCACAGCAAAACAGATAGAGTaGGGCTGCCTAACAGTGCAA | + |
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Preference number: 4 (lower is better) Translates to: LYDSISHFSSHVHSKDVTAKQIE*GCLTVQ Trigger: TTGCACTGTTAGGCAGCCCCACTCTATCTGTTTTGC...TGTGACATCTTTAGAGTGGACGTGTGAGGAGAAATGACTAATGGAATCATACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS-3UTR CCA 90 bp | TATCCTTCAGAGAGAGAACACACCGTTCCGATCTATTCCTGGACAAATCCACATAAGCTTCCTCTTTCTTaGGTGAAATTTTCCTGTCAG | + |
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Preference number: 4 (lower is better) Translates to: YPSEREHTVPIYSWTNPHKLPLS*VKFSCQ Trigger: CTGACAGGAAAATTTCACCCAAGAAAGAGGAAGCTT...ATGTGGATTTGTCCAGGAATAGATCGGAACGGTGTGTTCTCTCTCTGAAGGATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| 3UTR CAA 72 bp | AAAGATGTCACAGTCAGCCACTCTGTCTCTAATACATaGATCAATGTCAGAAGACATGTGTTCAGGAACACC | + |
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Preference number: 4 (lower is better) Translates to: KDVTVSHSVSNT*INVRRHVFRNT Trigger: GGTGTTCCTGAACACATGTCTTCTGACATTGATCAATGTATTAGAGACAGAGTGGCTGACTGTGACATCTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS-3UTR TCA 90 bp | GTTCAGGAACACCTTGATCGTAGACTTGTCCTTAGACTTTCATTTCTCAGTTACTCAGATCATGCAAAATaGCACCTGCCAAATGCAGAT | + |
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Preference number: 4 (lower is better) Translates to: VQEHLDRRLVLRLSFLSYSDHAK*HLPNAD Trigger: ATCTGCATTTGGCAGGTGTCATTTTGCATGATCTGA...GTAACTGAGAAATGAAAGTCTAAGGACAAGTCTACGATCAAGGTGTTCCTGAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS-3UTR CCA 90 bp | AACACAATGGCTAGGTTCAGGAATCATGAACAAAATAGAGATCCCCACTGGACACTCCTCAATGCAATATaGTTGGAAAATCTGCAAGAT | + |
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Preference number: 4 (lower is better) Translates to: NTMARFRNHEQNRDPHWTLLNAI*LENLQD Trigger: ATCTTGCAGATTTTCCAACCATATTGCATTGAGGAG...TGTCCAGTGGGGATCTCTATTTTGTTCATGATTCCTGAACCTAGCCATTGTGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| 3UTR CAA 72 bp | AGAAGACATGTGTTCAGGAACACCTTGATCGTAGACTaGTCCTTAGACTTTCATTTCTCAGTTACCAAACGA | + |
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Preference number: 4 (lower is better) Translates to: RRHVFRNTLIVD*SLDFHFSVTKR Trigger: TCGTTTGGTAACTGAGAAATGAAAGTCTAAGGACAAGTCTACGATCAAGGTGTTCCTGAACACATGTCTTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS-3UTR CCA 90 bp | TTCAGACACAAAGAAACACAATGGCTAGGTTCAGGAATCATGAACAAAATAGAGCTGGACAATTCTCTCTaGTCTAAGAACAAAACCGGT | + |
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Preference number: 4 (lower is better) Translates to: FRHKETQWLGSGIMNKIELDNSL*SKNKTG Trigger: ACCGGTTTTGTTCTTAGACCAGAGAGAATTGTCCAG...CTCTATTTTGTTCATGATTCCTGAACCTAGCCATTGTGTTTCTTTGTGTCTGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| 3UTR CAA 72 bp | TTGATCAATGTCAGAAGACATGTGTTCAGGAACACCTaGATCGTAGACTTGTCCTTAGACTTTCATTTCTCA | + |
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Preference number: 4 (lower is better) Translates to: LINVRRHVFRNT*IVDLSLDFHFS Trigger: TGAGAAATGAAAGTCTAAGGACAAGTCTACGATCAAGGTGTTCCTGAACACATGTCTTCTGACATTGATCAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS-3UTR GCA 90 bp | AGGAATCATGAACAAAATAGAGATCCCCACTGGACATTTATAATGCAAACCTTCATGCAAAATGACACCTaGCAAATGCAGATGTTTGAG | + |
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Preference number: 4 (lower is better) Translates to: RNHEQNRDPHWTFIMQTFMQNDT*QMQMFE Trigger: CTCAAACATCTGCATTTGGCAGGTGTCATTTTGCAT...GAAGGTTTGCATTATAAATGTCCAGTGGGGATCTCTATTTTGTTCATGATTCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS-3UTR CCA 90 bp | AAAGAAACACAATGGCTAGGTTCAGGAATCATGAACAAAATAGAGATCCCCACTTCAATGCAATATGGTTaGAAAATCTGCAAGATCTTC | + |
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Preference number: 4 (lower is better) Translates to: KETQWLGSGIMNKIEIPTSMQYG*KICKIF Trigger: GAAGATCTTGCAGATTTTCCAACCATATTGCATTGA...AGTGGGGATCTCTATTTTGTTCATGATTCCTGAACCTAGCCATTGTGTTTCTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS GCA 90 bp | GAGTTTACGAAGATTCTTCATCTGACCAAGGCAAGGTGCAAAGCATaGCAGTGTGGACTGAGTCCAGCCTATATGCAATTCCAACTCCTC | + |
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Preference number: 5 (lower is better) Translates to: EFTKILHLTKARCKA*QCGLSPAYMQFQLL Trigger: GAGGAGTTGGAATTGCATATAGGCTGGACTCAGTCCACACTGGCATGCTTTGCACCTTGCCTTGGTCAGATGAAGAATCTTCGTAAACTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS-3UTR CAA 90 bp | ATGAGTTCAAGTCCAGCGTGGGCTAATATGACATTGTTAGGTAGAAAGAAAGAGGGCATGGAGATGTCATaGTCACAGAAGTTGACCTCG | + |
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Preference number: 5 (lower is better) Translates to: MSSSPAWANMTLLGRKKEGMEMS*SQKLTS Trigger: CGAGGTCAACTTCTGTGACAATGACATCTCCATGCC...CTCTTTCTTTCTACCTAACAATGTCATATTAGCCCACGCTGGACTTGAACTCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS TCA 90 bp | AGTAAGTTTGATGTTCCTCTAGATAAAACTGAAGGCAAAGGTCAGTaGCCACCTTTAAACGTCTCCTCAGTGCATATCTATGAGGGCGTG | + |
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Preference number: 5 (lower is better) Translates to: SKFDVPLDKTEGKGQ*PPLNVSSVHIYEGV Trigger: CACGCCCTCATAGATATGCACTGAGGAGACGTTTAAAGGTGGTCACTGACCTTTGCCTTCAGTTTTATCTAGAGGAACATCAAACTTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS CCA 90 bp | GGACTGAGTCCAGCCTATATGCAATTCCAACTCCTCAATGCAATATaGTTGGAAAATCTGCAAGATCTTCCTTACAGTGTGCATAGGCAA | + |
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Preference number: 5 (lower is better) Translates to: GLSPAYMQFQLLNAI*LENLQDLPYSVHRQ Trigger: TTGCCTATGCACACTGTAAGGAAGATCTTGCAGATTTTCCAACCATATTGCATTGAGGAGTTGGAATTGCATATAGGCTGGACTCAGTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS-3UTR CAA 90 bp | AACACCTTGATCGTAGACTTGTCCTTAGACTTTCATTTCTCAGTTACCAAACGATCAATGAAGGCTGCCTaGAAGAGTGGTGGATACAAC | + |
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Preference number: 5 (lower is better) Translates to: NTLIVDLSLDFHFSVTKRSMKAA*KSGGYN Trigger: GTTGTATCCACCACTCTTCAAGGCAGCCTTCATTGA...TCGTTTGGTAACTGAGAAATGAAAGTCTAAGGACAAGTCTACGATCAAGGTGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS-3UTR CAA 90 bp | ATGAGTTCAAGTCCAGCGTGGGCTAATATGACATTGTTAGGTAGAAAGAAAGAGGAAGCTTCCTCTTTCTaGGGTGAAATTTTCCTGTCA | + |
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Preference number: 5 (lower is better) Translates to: MSSSPAWANMTLLGRKKEEASSF*GEIFLS Trigger: TGACAGGAAAATTTCACCCAAGAAAGAGGAAGCTTC...CTCTTTCTTTCTACCTAACAATGTCATATTAGCCCACGCTGGACTTGAACTCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS-3UTR CAA 90 bp | TATTCCTGGACAAATCCACATTTTGAAATGCACAACTGTATGATTCCATTAGTCTCTCAGGTCCAGCACTaGAAGCTTCCTCTTTCTTGG | + |
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Preference number: 5 (lower is better) Translates to: YSWTNPHFEMHNCMIPLVSQVQH*KLPLSW Trigger: CCAAGAAAGAGGAAGCTTCAAGTGCTGGACCTGAGA...GACTAATGGAATCATACAGTTGTGCATTTCAAAATGTGGATTTGTCCAGGAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS-3UTR CAA 90 bp | GTAGACTTGTCCTTAGACTTTCATTTCTCAGTTACCAAACGAATCCTCCTCCTAAGGTCTTCAGAGTGTTaGCAACATTTTCTAGGAAAA | + |
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Preference number: 5 (lower is better) Translates to: VDLSLDFHFSVTKRILLLRSSEC*QHFLGK Trigger: TTTTCCTAGAAAATGTTGCAAACACTCTGAAGACCT...TAGGAGGAGGATTCGTTTGGTAACTGAGAAATGAAAGTCTAAGGACAAGTCTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS GCA 72 bp | TTCCTTCAGTATCCTCGTGTGTCTGTCAATGAAGGCTaGCTTGAAGAGTGGTGGATACAACTCCCTGGGCAG | + |
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Preference number: 6 (lower is better) Translates to: FLQYPRVSVNEG*LEEWWIQLPGQ Trigger: CTGCCCAGGGAGTTGTATCCACCACTCTTCAAGGCAGCCTTCATTGACAGACACACGAGGATACTGAAGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS GCA 72 bp | ACTGGGCAAAGGACTCCATGTCTGACTGTGAGTACTTaGAGAGAGCAATTGACAGGAACTCCAGCGGAGTCT | + |
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Preference number: 6 (lower is better) Translates to: TGQRTPCLTVST*REQLTGTPAES Trigger: AGACTCCGCTGGAGTTCCTGTCAATTGCTCTCTGCAAGTACTCACAGTCAGACATGGAGTCCTTTGCCCAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS GCA 72 bp | GAGTTTACGAAGATTCTTCATCTGACCAAGGCAAGGTaGAAAGCATGCCAGTGTGGACTGAGTCCAGCCTAT | + |
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Preference number: 6 (lower is better) Translates to: EFTKILHLTKAR*KACQCGLSPAY Trigger: ATAGGCTGGACTCAGTCCACACTGGCATGCTTTGCACCTTGCCTTGGTCAGATGAAGAATCTTCGTAAACTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS TCA 72 bp | AGGTCGAGATGCCGGAGACTGTTGAGTTTGGAGAACTaGGAAATGAACTTGGTGACACTCTTCTCCTGTATG | + |
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Preference number: 6 (lower is better) Translates to: RSRCRRLLSLEN*EMNLVTLFSCM Trigger: CATACAGGAGAAGAGTGTCACCAAGTTCATTTCTCAGTTCTCCAAACTCAACAGTCTCCGGCATCTCGACCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS CAA 72 bp | TTAAACGTCTCCTCAGTGCATATCTATGAGGGCGTGTaGCTTTCTGCTTTTGACACACTGTCTCTGCTGAGC | + |
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Preference number: 6 (lower is better) Translates to: LNVSSVHIYEGV*LSAFDTLSLLS Trigger: GCTCAGCAGAGACAGTGTGTCAAAAGCAGAAAGCAACACGCCCTCATAGATATGCACTGAGGAGACGTTTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS TCA 72 bp | ACTAGTGTTAGATGGAGTTTACGAAGATTCTTCATCTaGCCAAGGCAAGGTGCAAAGCATGCCAGTGTGGAC | + |
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Preference number: 6 (lower is better) Translates to: TSVRWSLRRFFI*PRQGAKHASVD Trigger: GTCCACACTGGCATGCTTTGCACCTTGCCTTGGTCAGATGAAGAATCTTCGTAAACTCCATCTAACACTAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS TCA 72 bp | GAGCACTTATTCAGGGCAGGGATAAAAGCGCTGACCTaGGAGTCTGTCATCCTACAATGTTCTAATTCCAAG | + |
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Preference number: 6 (lower is better) Translates to: EHLFRAGIKALT*ESVILQCSNSK Trigger: CTTGGAATTAGAACATTGTAGGATGACAGACTCTCAGGTCAGCGCTTTTATCCCTGCCCTGAATAAGTGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS GCA 72 bp | GAGAGGCACAAGACTCAGATCATGCAAAATGACACCTaGCAAATGCAGATGTTTGAGATGATGGAGACTCTG | + |
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Preference number: 6 (lower is better) Translates to: ERHKTQIMQNDT*QMQMFEMMETL Trigger: CAGAGTCTCCATCATCTCAAACATCTGCATTTGGCAGGTGTCATTTTGCATGATCTGAGTCTTGTGCCTCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS CCA 72 bp | ATTTCTCAGGTCCAGCACTTGAAGCTTCCTCTTTCTTaGGTGAAATTTTCCTGTCAGCTGCATGTCTACACC | + |
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Preference number: 6 (lower is better) Translates to: ISQVQHLKLPLS*VKFSCQLHVYT Trigger: GGTGTAGACATGCAGCTGACAGGAAAATTTCACCCAAGAAAGAGGAAGCTTCAAGTGCTGGACCTGAGAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS CCA 72 bp | GTTCATGAGCTCAGAAGAAAGCTGGACAATTCTCTCTaGTCTAAGAACAAAACCGGTTTCATAGCACTCCAG | + |
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Preference number: 6 (lower is better) Translates to: VHELRRKLDNSL*SKNKTGFIALQ Trigger: CTGGAGTGCTATGAAACCGGTTTTGTTCTTAGACCAGAGAGAATTGTCCAGCTTTCTTCTGAGCTCATGAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS TCA 72 bp | GATGTTCCTCTAGATAAAACTGAAGGCAAAGGTCAGTaGCCACCTTTAAACGTCTCCTCAGTGCATATCTAT | + |
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Preference number: 6 (lower is better) Translates to: DVPLDKTEGKGQ*PPLNVSSVHIY Trigger: ATAGATATGCACTGAGGAGACGTTTAAAGGTGGTCACTGACCTTTGCCTTCAGTTTTATCTAGAGGAACATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS GCA 72 bp | TATGGTTGGAAAATCTGCAAGATCTTCCTTACAGTGTaGATAGGCAATTCCCTAATCTGCATCTTCACACAG | + |
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Preference number: 6 (lower is better) Translates to: YGWKICKIFLTV*IGNSLICIFTQ Trigger: CTGTGTGAAGATGCAGATTAGGGAATTGCCTATGCACACTGTAAGGAAGATCTTGCAGATTTTCCAACCATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS CCA 72 bp | CCAGCCTATATGCAATTCCAACTCCTCAATGCAATATaGTTGGAAAATCTGCAAGATCTTCCTTACAGTGTG | + |
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Preference number: 6 (lower is better) Translates to: PAYMQFQLLNAI*LENLQDLPYSV Trigger: CACACTGTAAGGAAGATCTTGCAGATTTTCCAACCATATTGCATTGAGGAGTTGGAATTGCATATAGGCTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS TCA 72 bp | TCTTCTCCTGTATGTCTGTTGACGTACATAGAAAAGTaGAGAGTTTCTCGTGGACTAGTGTTAGATGGAGTT | + |
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Preference number: 6 (lower is better) Translates to: SSPVCLLTYIEK*RVSRGLVLDGV Trigger: AACTCCATCTAACACTAGTCCACGAGAAACTCTTCACTTTTCTATGTACGTCAACAGACATACAGGAGAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS GCA 72 bp | AATTCCAACTCCTCAATGCAATATGGTTGGAAAATCTaGAAGATCTTCCTTACAGTGTGCATAGGCAATTCC | + |
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Preference number: 6 (lower is better) Translates to: NSNSSMQYGWKI*KIFLTVCIGNS Trigger: GGAATTGCCTATGCACACTGTAAGGAAGATCTTGCAGATTTTCCAACCATATTGCATTGAGGAGTTGGAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS CCA 72 bp | CCTATATGCAATTCCAACTCCTCAATGCAATATGGTTaGAAAATCTGCAAGATCTTCCTTACAGTGTGCATA | + |
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Preference number: 6 (lower is better) Translates to: PICNSNSSMQYG*KICKIFLTVCI Trigger: TATGCACACTGTAAGGAAGATCTTGCAGATTTTCCAACCATATTGCATTGAGGAGTTGGAATTGCATATAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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| CDS CCA 72 bp | TCTGTTGACGTACATAGAAAAGTGAAGAGTTTCTCGTaGACTAGTGTTAGATGGAGTTTACGAAGATTCTTC | + |
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Preference number: 6 (lower is better) Translates to: SVDVHRKVKSFS*TSVRWSLRRFF Trigger: GAAGAATCTTCGTAAACTCCATCTAACACTAGTCCACGAGAAACTCTTCACTTTTCTATGTACGTCAACAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105774.2 |
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