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Pregenerated sensors for PRAMEL18 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037028

Ensembl transcript IDs: ENSMUST00000075999.4

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp CTCACATACTCGTTTCTCTGCTGGGCCCATTGTAGAAAGCATGTTTaGTCTTTGTTGAGAGAGAAGAAGAGGCTCAGGTCAGTGACCACC +
Preference number: 5 (lower is better)
Translates to: LTYSFLCWAHCRKHV*SLLREKKRLRSVTT
Trigger: GGTGGTCACTGACCTGAGCCTCTTCTTCTCTCTCAACAAAGACCAAACATGCTTTCTACAATGGGCCCAGCAGAGAAACGAGTATGTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075999.4
CDS CCA 90 bp CTTTATTATCTCTGTGTGTCTGCTATTGAAGGCCTTTATGAAGAGTaGTGGGAAGAGCGTGATGGGCAGGTCCTCCAGATTAGAGAAGTC +
Preference number: 5 (lower is better)
Translates to: LYYLCVSAIEGLYEE*WEERDGQVLQIREV
Trigger: GACTTCTCTAATCTGGAGGACCTGCCCATCACGCTCTTCCCACCACTCTTCATAAAGGCCTTCAATAGCAGACACACAGAGATAATAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075999.4
CDS CCA 90 bp ATATTCATTTTCAGACAGCATAGCCTCACATACTCGTTTCTCTGCTaGGCCCATTGTAGAAAGCATGTTTGGTCTTTGTTGAGAGAGAAG +
Preference number: 5 (lower is better)
Translates to: IFIFRQHSLTYSFLC*AHCRKHVWSLLREK
Trigger: CTTCTCTCTCAACAAAGACCAAACATGCTTTCTACAATGGGCCCAGCAGAGAAACGAGTATGTGAGGCTATGCTGTCTGAAAATGAATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000075999.4
CDS TCA 90 bp CATACATCCCAGAAATCGTGGTGCAAATCTCTCAAATCCACAACTTaGAGCTTCCTTCTTCTGAGACTAACATTCTGTGTCAGCAGTATA +
Preference number: 5 (lower is better)
Translates to: HTSQKSWCKSLKSTT*SFLLLRLTFCVSSI
Trigger: TATACTGCTGACACAGAATGTTAGTCTCAGAAGAAGGAAGCTTCAAGTTGTGGATTTGAGAGATTTGCACCACGATTTCTGGGATGTATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075999.4
CDS TCA 90 bp ACACACCACTACCTGACATCAAGTACATTTGACATAGATGGAATCTaGGAAGATTTCTCATCTGGCCAAAGCAAGGAGCAAAGCAACTTA +
Preference number: 5 (lower is better)
Translates to: THHYLTSSTFDIDGI*EDFSSGQSKEQSNL
Trigger: TAAGTTGCTTTGCTCCTTGCTTTGGCCAGATGAGAAATCTTCTCAGATTCCATCTATGTCAAATGTACTTGATGTCAGGTAGTGGTGTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075999.4
CDS TCA 90 bp ACCTCTGCAAATCTATACACACCACTACCTGACATCAAGTACATTTaGCATAGATGGAATCTGAGAAGATTTCTCATCTGGCCAAAGCAA +
Preference number: 5 (lower is better)
Translates to: TSANLYTPLPDIKYI*HRWNLRRFLIWPKQ
Trigger: TTGCTTTGGCCAGATGAGAAATCTTCTCAGATTCCATCTATGTCAAATGTACTTGATGTCAGGTAGTGGTGTGTATAGATTTGCAGAGGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075999.4
CDS TCA 90 bp TCTGCAGAGTTTCAGATACATTCTTTAGGAGAATTTGGAGACTCTTaGAACCTGACTTGGGAAACTCTACACCATGGAATTGCAGATGTT +
Preference number: 5 (lower is better)
Translates to: SAEFQIHSLGEFGDS*NLTWETLHHGIADV
Trigger: AACATCTGCAATTCCATGGTGTAGAGTTTCCCAAGTCAGGTTTCAAGAGTCTCCAAATTCTCCTAAAGAATGTATCTGAAACTCTGCAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075999.4
CDS CCA 72 bp CTCTGTGTGTCTGCTATTGAAGGCCTTTATGAAGAGTaGTGGGAAGAGCGTGATGGGCAGGTCCTCCAGATT +
Preference number: 6 (lower is better)
Translates to: LCVSAIEGLYEE*WEERDGQVLQI
Trigger: AATCTGGAGGACCTGCCCATCACGCTCTTCCCACCACTCTTCATAAAGGCCTTCAATAGCAGACACACAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075999.4
CDS CAA 90 bp ACTAACATTCTGTGTCAGCAGTATATCTATGCCATTGAGCACAGCTaGCAGCATCTCCACACCAGCGGTTTTAAGCAGTGCCCCCACAGG +
Preference number: 6 (lower is better)
Translates to: TNILCQQYIYAIEHS*QHLHTSGFKQCPHR
Trigger: CCTGTGGGGGCACTGCTTAAAACCGCTGGTGTGGAGATGCTGCAAGCTGTGCTCAATGGCATAGATATACTGCTGACACAGAATGTTAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000075999.4
CDS CAA 72 bp TGCTGGGCCCATTGTAGAAAGCATGTTTGGTCTTTGTaGAGAGAGAAGAAGAGGCTCAGGTCAGTGACCACC +
Preference number: 6 (lower is better)
Translates to: CWAHCRKHVWSL*REKKRLRSVTT
Trigger: GGTGGTCACTGACCTGAGCCTCTTCTTCTCTCTCAACAAAGACCAAACATGCTTTCTACAATGGGCCCAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075999.4
CDS CAA 90 bp TCGTTTCTCTGCTGGGCCCATTGTAGAAAGCATGTTTGGTCTTTGTaGAGAGAGAAGAAGAGGCTCAGGTCAGTGACCACCTTCAAACGC +
Preference number: 6 (lower is better)
Translates to: SFLCWAHCRKHVWSL*REKKRLRSVTTFKR
Trigger: GCGTTTGAAGGTGGTCACTGACCTGAGCCTCTTCTTCTCTCTCAACAAAGACCAAACATGCTTTCTACAATGGGCCCAGCAGAGAAACGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075999.4
CDS CAA 90 bp TACTCGTTTCTCTGCTGGGCCCATTGTAGAAAGCATGTTTGGTCTTaGTTGAGAGAGAAGAAGAGGCTCAGGTCAGTGACCACCTTCAAA +
Preference number: 6 (lower is better)
Translates to: YSFLCWAHCRKHVWS*LREKKRLRSVTTFK
Trigger: TTTGAAGGTGGTCACTGACCTGAGCCTCTTCTTCTCTCTCAACAAAGACCAAACATGCTTTCTACAATGGGCCCAGCAGAGAAACGAGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075999.4
CDS GCA 72 bp GCTCAGGTCAGTGACCACCTTCAAACGCCTCCTCAGTaGATATTTAGGTATGCGTTTCGAAATTTGCTCCTT +
Preference number: 6 (lower is better)
Translates to: AQVSDHLQTPPQ*IFRYAFRNLLL
Trigger: AAGGAGCAAATTTCGAAACGCATACCTAAATATGCACTGAGGAGGCGTTTGAAGGTGGTCACTGACCTGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075999.4
CDS CCA 72 bp TCGTTTCTCTGCTGGGCCCATTGTAGAAAGCATGTTTaGTCTTTGTTGAGAGAGAAGAAGAGGCTCAGGTCA +
Preference number: 6 (lower is better)
Translates to: SFLCWAHCRKHV*SLLREKKRLRS
Trigger: TGACCTGAGCCTCTTCTTCTCTCTCAACAAAGACCAAACATGCTTTCTACAATGGGCCCAGCAGAGAAACGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075999.4
CDS CCA 72 bp TTCAGACAGCATAGCCTCACATACTCGTTTCTCTGCTaGGCCCATTGTAGAAAGCATGTTTGGTCTTTGTTG +
Preference number: 6 (lower is better)
Translates to: FRQHSLTYSFLC*AHCRKHVWSLL
Trigger: CAACAAAGACCAAACATGCTTTCTACAATGGGCCCAGCAGAGAAACGAGTATGTGAGGCTATGCTGTCTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075999.4
CDS TCA 72 bp CAGAAATCGTGGTGCAAATCTCTCAAATCCACAACTTaGAGCTTCCTTCTTCTGAGACTAACATTCTGTGTC +
Preference number: 6 (lower is better)
Translates to: QKSWCKSLKSTT*SFLLLRLTFCV
Trigger: GACACAGAATGTTAGTCTCAGAAGAAGGAAGCTTCAAGTTGTGGATTTGAGAGATTTGCACCACGATTTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075999.4
CDS CAA 72 bp CCAGAAATCGTGGTGCAAATCTCTCAAATCCACAACTaGAAGCTTCCTTCTTCTGAGACTAACATTCTGTGT +
Preference number: 6 (lower is better)
Translates to: PEIVVQISQIHN*KLPSSETNILC
Trigger: ACACAGAATGTTAGTCTCAGAAGAAGGAAGCTTCAAGTTGTGGATTTGAGAGATTTGCACCACGATTTCTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075999.4
CDS TCA 72 bp TACCTGACATCAAGTACATTTGACATAGATGGAATCTaGGAAGATTTCTCATCTGGCCAAAGCAAGGAGCAA +
Preference number: 6 (lower is better)
Translates to: YLTSSTFDIDGI*EDFSSGQSKEQ
Trigger: TTGCTCCTTGCTTTGGCCAGATGAGAAATCTTCTCAGATTCCATCTATGTCAAATGTACTTGATGTCAGGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075999.4
CDS CAA 72 bp AAGGAGCAAAGCAACTTAGAAAGGATAGGACCTGATTaGTGTGTATTTCCAATTCCTCAATATAGTTTGGAT +
Preference number: 6 (lower is better)
Translates to: KEQSNLERIGPD*CVFPIPQYSLD
Trigger: ATCCAAACTATATTGAGGAATTGGAAATACACACAAATCAGGTCCTATCCTTTCTAAGTTGCTTTGCTCCTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000075999.4