Pregenerated sensors for PRAMEL16 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078511Ensembl transcript IDs: ENSMUST00000105766.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | ATCAATGTCAGAAGACATGTGTTCAGGAACCCCTTGATCATAGACTaGTCCTTAGACTTTCATTTCTCAGTTACCAAACGAATCCTCCTC | + |
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Preference number: 2 (lower is better) Translates to: INVRRHVFRNPLIID*SLDFHFSVTKRILL Trigger: GAGGAGGATTCGTTTGGTAACTGAGAAATGAAAGTCTAAGGACAAGTCTATGATCAAGGGGTTCCTGAACACATGTCTTCTGACATTGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| 3UTR CAA 90 bp | TCCAATACAATGATCAATGTCAGAAGACATGTGTTCAGGAACCCCTaGATCATAGACTTGTCCTTAGACTTTCATTTCTCAGTTACCAAA | + |
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Preference number: 2 (lower is better) Translates to: SNTMINVRRHVFRNP*IIDLSLDFHFSVTK Trigger: TTTGGTAACTGAGAAATGAAAGTCTAAGGACAAGTCTATGATCAAGGGGTTCCTGAACACATGTCTTCTGACATTGATCATTGTATTGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS-3UTR TCA 90 bp | CACGTCCACTCTCTAGATGTCACAGTCAGCCCCTTTGTCTCCAATACAATGATCCGAAGATTCTTCATCTaGCCAAGGCAAGGTGTGAAG | + |
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Preference number: 4 (lower is better) Translates to: HVHSLDVTVSPFVSNTMIRRFFI*PRQGVK Trigger: CTTCACACCTTGCCTTGGTCAGATGAAGAATCTTCG...GATCATTGTATTGGAGACAAAGGGGCTGACTGTGACATCTAGAGAGTGGACGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS-3UTR TCA 90 bp | TCCAATACAATGATCAATGTCAGAAGACATGTGTTCAGGAACCCCTTGATCATAACACACTGTCTCTGCTaGGCCGTCTCCATCCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: SNTMINVRRHVFRNPLIITHCLC*AVSILW Trigger: CCAGAGGATGGAGACGGCTCAGCAGAGACAGTGTGT...TATGATCAAGGGGTTCCTGAACACATGTCTTCTGACATTGATCATTGTATTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS-3UTR TCA 90 bp | GAACCCCTTGATCATAGACTTGTCCTTAGACTTTCATTTCTCAGTTACCAAACGCTTGCAGAGAGCAATTaGCAGGAACTCCAGCGGAGT | + |
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Preference number: 4 (lower is better) Translates to: EPLDHRLVLRLSFLSYQTLAESN*QELQRS Trigger: ACTCCGCTGGAGTTCCTGTCAATTGCTCTCTGCAAG...CGTTTGGTAACTGAGAAATGAAAGTCTAAGGACAAGTCTATGATCAAGGGGTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS-3UTR GCA 90 bp | AATACAATGATCAATGTCAGAAGACATGTGTTCAGGAACCCCTTGATCATAGACAGGGACATTCATCAGTaGCCCCACAGGGAGGCAAAG | + |
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Preference number: 4 (lower is better) Translates to: NTMINVRRHVFRNPLIIDRDIHQ*PHREAK Trigger: CTTTGCCTCCCTGTGGGGGCACTGATGAATGTCCCT...GTCTATGATCAAGGGGTTCCTGAACACATGTCTTCTGACATTGATCATTGTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS-3UTR GCA 90 bp | CTCTCTAGATGTCACAGTCAGCCCCTTTGTCTCCAATACAATGATCAATGTCAGCAGATAGAGTGGGGCTaGCTAACAGTGCAAAGTATG | + |
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Preference number: 4 (lower is better) Translates to: LSRCHSQPLCLQYNDQCQQIEWG*LTVQSM Trigger: CATACTTTGCACTGTTAGGCAGCCCCACTCTATCTG...CTGACATTGATCATTGTATTGGAGACAAAGGGGCTGACTGTGACATCTAGAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS-3UTR TCA 90 bp | ATAGACTTGTCCTTAGACTTTCATTTCTCAGTTACCAAACGAATCCTCCTCCTACTCAGGTCCAGCACTTaGAGCTTCCTCTTTCTTGGG | + |
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Preference number: 4 (lower is better) Translates to: IDLSLDFHFSVTKRILLLLRSST*SFLFLG Trigger: CCCAAGAAAGAGGAAGCTTCAAGTGCTGGACCTGAG...TAGGAGGAGGATTCGTTTGGTAACTGAGAAATGAAAGTCTAAGGACAAGTCTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS-3UTR TCA 90 bp | TCACACGTCCACTCTCTAGATGTCACAGTCAGCCCCTTTGTCTCCAATACAATGTTGAGTTTGGAGAACTaGGAAATGAACTTGGTGACA | + |
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Preference number: 4 (lower is better) Translates to: SHVHSLDVTVSPFVSNTMLSLEN*EMNLVT Trigger: TGTCACCAAGTTCATTTCTCAGTTCTCCAAACTCAA...CATTGTATTGGAGACAAAGGGGCTGACTGTGACATCTAGAGAGTGGACGTGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS-3UTR GCA 90 bp | CTCTCTAGATGTCACAGTCAGCCCCTTTGTCTCCAATACAATGATCAATGTCAGACATCTTCTCTCCTGTaGCCACTGCAAGAAGTAAGT | + |
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Preference number: 4 (lower is better) Translates to: LSRCHSQPLCLQYNDQCQTSSLL*PLQEVS Trigger: ACTTACTTCTTGCAGTGGGCACAGGAGAGAAGATGT...CTGACATTGATCATTGTATTGGAGACAAAGGGGCTGACTGTGACATCTAGAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS-3UTR TCA 90 bp | TCCAATACAATGATCAATGTCAGAAGACATGTGTTCAGGAACCCCTTGATCATACTCAGTGCATATCTATaGGGGCGTGTTGCTTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: SNTMINVRRHVFRNPLIILSAYL*GRVAFC Trigger: GCAGAAAGCAACACGCCCTCATAGATATGCACTGAG...TATGATCAAGGGGTTCCTGAACACATGTCTTCTGACATTGATCATTGTATTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS-3UTR TCA 90 bp | GTTCAGGAACCCCTTGATCATAGACTTGTCCTTAGACTTTCATTTCTCAGTTACTCCTCTAGATCAAACTaGAGGCAAAGGTCAGTGACC | + |
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Preference number: 4 (lower is better) Translates to: VQEPLDHRLVLRLSFLSYSSRSN*RQRSVT Trigger: GGTCACTGACCTTTGCCTTCAGTTTGATCTAGAGGA...GTAACTGAGAAATGAAAGTCTAAGGACAAGTCTATGATCAAGGGGTTCCTGAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS-3UTR GCA 90 bp | GAACCCCTTGATCATAGACTTGTCCTTAGACTTTCATTTCTCAGTTACCAAACGGGCAATTCCCTAATTTaGATCTTCACACAGCACAGG | + |
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Preference number: 4 (lower is better) Translates to: EPLDHRLVLRLSFLSYQTGNSLI*IFTQHR Trigger: CCTGTGCTGTGTGAAGATGCAAATTAGGGAATTGCC...CGTTTGGTAACTGAGAAATGAAAGTCTAAGGACAAGTCTATGATCAAGGGGTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS-3UTR GCA 90 bp | AACCCCTTGATCATAGACTTGTCCTTAGACTTTCATTTCTCAGTTACCAAACGACCAGTCAGGTTGAGATaGTGGAGACTGTTGAGTTTG | + |
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Preference number: 4 (lower is better) Translates to: NPLIIDLSLDFHFSVTKRPVRLR*WRLLSL Trigger: CAAACTCAACAGTCTCCAGCATCTCAACCTGACTGG...TCGTTTGGTAACTGAGAAATGAAAGTCTAAGGACAAGTCTATGATCAAGGGGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS-3UTR TCA 90 bp | AACCCCTTGATCATAGACTTGTCCTTAGACTTTCATTTCTCAGTTACCAAACGATTCCTCTTTCTTGGGTaGAAATTTCCTGTCAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: NPLIIDLSLDFHFSVTKRFLFLG*KFPVSC Trigger: GCAGCTGACAGGAAATTTTCACCCAAGAAAGAGGAA...TCGTTTGGTAACTGAGAAATGAAAGTCTAAGGACAAGTCTATGATCAAGGGGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS-3UTR GCA 90 bp | CTCTCTAGATGTCACAGTCAGCCCCTTTGTCTCCAATACAATGATCAATGTCAGATGCAAAATGATACCTaGCAAATGCAAGTGTTTGAG | + |
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Preference number: 4 (lower is better) Translates to: LSRCHSQPLCLQYNDQCQMQNDT*QMQVFE Trigger: CTCAAACACTTGCATTTGGCAGGTATCATTTTGCAT...CTGACATTGATCATTGTATTGGAGACAAAGGGGCTGACTGTGACATCTAGAGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS-3UTR TCA 90 bp | CTTTGTCTCCAATACAATGATCAATGTCAGAAGACATGTGTTCAGGAACCCCTTTCAGATCATGCAAAATaGTACCTGCCAAATGCAAGT | + |
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Preference number: 4 (lower is better) Translates to: LCLQYNDQCQKTCVQEPLSDHAK*YLPNAS Trigger: ACTTGCATTTGGCAGGTATCATTTTGCATGATCTGA...AAGGGGTTCCTGAACACATGTCTTCTGACATTGATCATTGTATTGGAGACAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| 3UTR CAA 72 bp | AGAAGACATGTGTTCAGGAACCCCTTGATCATAGACTaGTCCTTAGACTTTCATTTCTCAGTTACCAAACGA | + |
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Preference number: 4 (lower is better) Translates to: RRHVFRNPLIID*SLDFHFSVTKR Trigger: TCGTTTGGTAACTGAGAAATGAAAGTCTAAGGACAAGTCTATGATCAAGGGGTTCCTGAACACATGTCTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS-3UTR TCA 90 bp | TTGATCATAGACTTGTCCTTAGACTTTCATTTCTCAGTTACCAAACGAATCCTCTGCAAAGTATGTTCATaGGCTCAGAAGAAAGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: LIIDLSLDFHFSVTKRILCKVCS*AQKKAG Trigger: TCCAGCTTTCTTCTGAGCTCATGAACATACTTTGCA...GAGGATTCGTTTGGTAACTGAGAAATGAAAGTCTAAGGACAAGTCTATGATCAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS-3UTR CCA 90 bp | CAATACAATGATCAATGTCAGAAGACATGTGTTCAGGAACCCCTTGATCATAGAAAGCTTCCTCTTTCTTaGGTGAAAATTTCCTGTCAG | + |
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Preference number: 4 (lower is better) Translates to: QYNDQCQKTCVQEPLDHRKLPLS*VKISCQ Trigger: CTGACAGGAAATTTTCACCCAAGAAAGAGGAAGCTT...TCTATGATCAAGGGGTTCCTGAACACATGTCTTCTGACATTGATCATTGTATTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| 3UTR CAA 72 bp | ATGATCAATGTCAGAAGACATGTGTTCAGGAACCCCTaGATCATAGACTTGTCCTTAGACTTTCATTTCTCA | + |
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Preference number: 4 (lower is better) Translates to: MINVRRHVFRNP*IIDLSLDFHFS Trigger: TGAGAAATGAAAGTCTAAGGACAAGTCTATGATCAAGGGGTTCCTGAACACATGTCTTCTGACATTGATCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS-3UTR TCA 90 bp | CAATACAATGATCAATGTCAGAAGACATGTGTTCAGGAACCCCTTGATCATAGAGATGAATCTGTACAATaGATAGACCTGTTGAAGCAT | + |
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Preference number: 4 (lower is better) Translates to: QYNDQCQKTCVQEPLDHRDESVQ*IDLLKH Trigger: ATGCTTCAACAGGTCTATTCATTGTACAGATTCATC...TCTATGATCAAGGGGTTCCTGAACACATGTCTTCTGACATTGATCATTGTATTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS-3UTR CCA 90 bp | CAATACAATGATCAATGTCAGAAGACATGTGTTCAGGAACCCCTTGATCATAGACTCTTCAATGCAATATaGTTGGAAAATCTGCAAGAT | + |
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Preference number: 4 (lower is better) Translates to: QYNDQCQKTCVQEPLDHRLFNAI*LENLQD Trigger: ATCTTGCAGATTTTCCAACCATATTGCATTGAAGAG...TCTATGATCAAGGGGTTCCTGAACACATGTCTTCTGACATTGATCATTGTATTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS TCA 90 bp | TTCTCGTGGACTAGTGTTAGATGGAGTTTACGAAGATTCTTCATCTaGCCAAGGCAAGGTGTGAAGCATGCCAGTGTGGACAGAGTCCAG | + |
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Preference number: 5 (lower is better) Translates to: FSWTSVRWSLRRFFI*PRQGVKHASVDRVQ Trigger: CTGGACTCTGTCCACACTGGCATGCTTCACACCTTGCCTTGGTCAGATGAAGAATCTTCGTAAACTCCATCTAACACTAGTCCACGAGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS TCA 90 bp | GTCTCCAGACCATATGTACAGCGCTGTGAACATATAAGGCATAACTaGGAGGCAAAACAGATAGAGTGGGGCTGCCTAACAGTGCAAAGT | + |
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Preference number: 5 (lower is better) Translates to: VSRPYVQRCEHIRHN*EAKQIEWGCLTVQS Trigger: ACTTTGCACTGTTAGGCAGCCCCACTCTATCTGTTTTGCCTCTCAGTTATGCCTTATATGTTCACAGCGCTGTACATATGGTCTGGAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS GCA 90 bp | GAGTTTACGAAGATTCTTCATCTGACCAAGGCAAGGTGTGAAGCATaGCAGTGTGGACAGAGTCCAGCCTGTATTCAATTCCAACTCTTC | + |
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Preference number: 5 (lower is better) Translates to: EFTKILHLTKARCEA*QCGQSPACIQFQLF Trigger: GAAGAGTTGGAATTGAATACAGGCTGGACTCTGTCCACACTGGCATGCTTCACACCTTGCCTTGGTCAGATGAAGAATCTTCGTAAACTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS TCA 90 bp | TTAGATGGAGTTTACGAAGATTCTTCATCTGACCAAGGCAAGGTGTaGAGCATGCCAGTGTGGACAGAGTCCAGCCTGTATTCAATTCCA | + |
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Preference number: 5 (lower is better) Translates to: LDGVYEDSSSDQGKV*SMPVWTESSLYSIP Trigger: TGGAATTGAATACAGGCTGGACTCTGTCCACACTGGCATGCTTCACACCTTGCCTTGGTCAGATGAAGAATCTTCGTAAACTCCATCTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS-3UTR CAA 90 bp | CACAGTCAGCCCCTTTGTCTCCAATACAATGATCAATGTCAGAAGACATGTGTTGCACAGCTTGCAATATaGACATGTCAGGGACATTCA | + |
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Preference number: 5 (lower is better) Translates to: HSQPLCLQYNDQCQKTCVAQLAI*TCQGHS Trigger: TGAATGTCCCTGACATGTCAATATTGCAAGCTGTGC...AACACATGTCTTCTGACATTGATCATTGTATTGGAGACAAAGGGGCTGACTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS CCA 90 bp | GGACAGAGTCCAGCCTGTATTCAATTCCAACTCTTCAATGCAATATaGTTGGAAAATCTGCAAGATCTTCCTGACAGTGTGAATAGGCAA | + |
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Preference number: 5 (lower is better) Translates to: GQSPACIQFQLFNAI*LENLQDLPDSVNRQ Trigger: TTGCCTATTCACACTGTCAGGAAGATCTTGCAGATTTTCCAACCATATTGCATTGAAGAGTTGGAATTGAATACAGGCTGGACTCTGTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS TCA 72 bp | CTGCATGTCTACACCATCCAGCACAGCTTGCAATATTaGCATGTCAGGGACATTCATCAGTGCCCCCACAGG | + |
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Preference number: 6 (lower is better) Translates to: LHVYTIQHSLQY*HVRDIHQCPHR Trigger: CCTGTGGGGGCACTGATGAATGTCCCTGACATGTCAATATTGCAAGCTGTGCTGGATGGTGTAGACATGCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS CAA 72 bp | ACTCCATGTCTGACTGTGAGTACTTGCAGAGAGCAATaGACAGGAACTCCAGCGGAGTCTTCAGACACCCGA | + |
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Preference number: 6 (lower is better) Translates to: TPCLTVSTCREQ*TGTPAESSDTR Trigger: TCGGGTGTCTGAAGACTCCGCTGGAGTTCCTGTCAATTGCTCTCTGCAAGTACTCACAGTCAGACATGGAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS GCA 72 bp | CCTGTCAGCTGCATGTCTACACCATCCAGCACAGCTTaGAATATTGACATGTCAGGGACATTCATCAGTGCC | + |
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Preference number: 6 (lower is better) Translates to: PVSCMSTPSSTA*NIDMSGTFISA Trigger: GGCACTGATGAATGTCCCTGACATGTCAATATTGCAAGCTGTGCTGGATGGTGTAGACATGCAGCTGACAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS CAA 72 bp | TTAAACGTCGCCTCAGTGCATATCTATGAGGGCGTGTaGCTTTCTGCTTTTGACACACTGTCTCTGCTGAGC | + |
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Preference number: 6 (lower is better) Translates to: LNVASVHIYEGV*LSAFDTLSLLS Trigger: GCTCAGCAGAGACAGTGTGTCAAAAGCAGAAAGCAACACGCCCTCATAGATATGCACTGAGGCGACGTTTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS TCA 72 bp | ACTAGTGTTAGATGGAGTTTACGAAGATTCTTCATCTaGCCAAGGCAAGGTGTGAAGCATGCCAGTGTGGAC | + |
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Preference number: 6 (lower is better) Translates to: TSVRWSLRRFFI*PRQGVKHASVD Trigger: GTCCACACTGGCATGCTTCACACCTTGCCTTGGTCAGATGAAGAATCTTCGTAAACTCCATCTAACACTAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS CCA 72 bp | ATTTCTCAGGTCCAGCACTTGAAGCTTCCTCTTTCTTaGGTGAAAATTTCCTGTCAGCTGCATGTCTACACC | + |
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Preference number: 6 (lower is better) Translates to: ISQVQHLKLPLS*VKISCQLHVYT Trigger: GGTGTAGACATGCAGCTGACAGGAAATTTTCACCCAAGAAAGAGGAAGCTTCAAGTGCTGGACCTGAGAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS CAA 72 bp | CCAGAAGTGATGGTGCACATTTCTCAGGTCCAGCACTaGAAGCTTCCTCTTTCTTGGGTGAAAATTTCCTGT | + |
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Preference number: 6 (lower is better) Translates to: PEVMVHISQVQH*KLPLSWVKISC Trigger: ACAGGAAATTTTCACCCAAGAAAGAGGAAGCTTCAAGTGCTGGACCTGAGAAATGTGCACCATCACTTCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS TCA 72 bp | AGGTTGAGATGCTGGAGACTGTTGAGTTTGGAGAACTaGGAAATGAACTTGGTGACACTCTTCTCCTGTATG | + |
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Preference number: 6 (lower is better) Translates to: RLRCWRLLSLEN*EMNLVTLFSCM Trigger: CATACAGGAGAAGAGTGTCACCAAGTTCATTTCTCAGTTCTCCAAACTCAACAGTCTCCAGCATCTCAACCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS GCA 72 bp | AAGAGGCACAAGACTCAGATCATGCAAAATGATACCTaGCAAATGCAAGTGTTTGAGATGATGGAGACTCTG | + |
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Preference number: 6 (lower is better) Translates to: KRHKTQIMQNDT*QMQVFEMMETL Trigger: CAGAGTCTCCATCATCTCAAACACTTGCATTTGGCAGGTATCATTTTGCATGATCTGAGTCTTGTGCCTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS TCA 72 bp | TCTTCTCCTGTATGTCTGTTGACGTACGTAGAAAAGTaGAGAGTTTCTCGTGGACTAGTGTTAGATGGAGTT | + |
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Preference number: 6 (lower is better) Translates to: SSPVCLLTYVEK*RVSRGLVLDGV Trigger: AACTCCATCTAACACTAGTCCACGAGAAACTCTTCACTTTTCTACGTACGTCAACAGACATACAGGAGAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS CCA 72 bp | CCAGCCTGTATTCAATTCCAACTCTTCAATGCAATATaGTTGGAAAATCTGCAAGATCTTCCTGACAGTGTG | + |
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Preference number: 6 (lower is better) Translates to: PACIQFQLFNAI*LENLQDLPDSV Trigger: CACACTGTCAGGAAGATCTTGCAGATTTTCCAACCATATTGCATTGAAGAGTTGGAATTGAATACAGGCTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS CCA 72 bp | ACAGTGCAAAGTATGTTCATGAGCTCAGAAGAAAGCTaGACAAATCTCTCTGCTCTAAGAACAAAACCGGTT | + |
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Preference number: 6 (lower is better) Translates to: TVQSMFMSSEES*TNLSALRTKPV Trigger: AACCGGTTTTGTTCTTAGAGCAGAGAGATTTGTCCAGCTTTCTTCTGAGCTCATGAACATACTTTGCACTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS CAA 72 bp | TCCTACAATGTTCTAGTTCCAAGGTCTTCAGAGTGTTaGCAACGTTTTCTAGGAAAATCCCAAGAGGCACAA | + |
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Preference number: 6 (lower is better) Translates to: SYNVLVPRSSEC*QRFLGKSQEAQ Trigger: TTGTGCCTCTTGGGATTTTCCTAGAAAACGTTGCAAACACTCTGAAGACCTTGGAACTAGAACATTGTAGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS CCA 72 bp | TCTGTTGACGTACGTAGAAAAGTGAAGAGTTTCTCGTaGACTAGTGTTAGATGGAGTTTACGAAGATTCTTC | + |
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Preference number: 6 (lower is better) Translates to: SVDVRRKVKSFS*TSVRWSLRRFF Trigger: GAAGAATCTTCGTAAACTCCATCTAACACTAGTCCACGAGAAACTCTTCACTTTTCTACGTACGTCAACAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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| CDS CAA 72 bp | GCCTGTATTCAATTCCAACTCTTCAATGCAATATGGTaGGAAAATCTGCAAGATCTTCCTGACAGTGTGAAT | + |
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Preference number: 6 (lower is better) Translates to: ACIQFQLFNAIW*ENLQDLPDSVN Trigger: ATTCACACTGTCAGGAAGATCTTGCAGATTTTCCAACCATATTGCATTGAAGAGTTGGAATTGAATACAGGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105766.2 |
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