Pregenerated sensors for PRAMEL13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028591Ensembl transcript IDs: ENSMUST00000030326.10, ENSMUST00000123854.2
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCGAAGTGGGGAAGAACACACTGGCAACTTCTTTCCCTCCACCCATaGAGTAAACACCCTCAAGGGTTTCTCCATCTAGAAACTTCATCT | + |
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Preference number: 1 (lower is better) Translates to: PKWGRTHWQLLSLHP*SKHPQGFLHLETSS Trigger: AGATGAAGTTTCTAGATGGAGAAACCCTTGAGGGTGTTTACTTCATGGGTGGAGGGAAAGAAGTTGCCAGTGTGTTCTTCCCCACTTCGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| 3UTR TCA 90 bp | AAATACATCCCTTTACTATGTGTCAGCTTTACTGATTTTCAAGCATaGTGTATGGTTAGTTGTTGGCTACTTATGAGTTTAAGCCTATCC | + |
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Preference number: 1 (lower is better) Translates to: KYIPLLCVSFTDFQA*CMVSCWLLMSLSLS Trigger: GGATAGGCTTAAACTCATAAGTAGCCAACAACTAACCATACATCATGCTTGAAAATCAGTAAAGCTGACACATAGTAAAGGGATGTATTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| 3UTR-3UTR GCA 90 bp | TGTTGGCTACTTATGAGTTTAAGCCTATCCCTTCTCACTGTTTGTGGTGGTCCTGGAGGTTGCCTCGGCTaGTCAACCAATCCCCCATCC | + |
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Preference number: 2 (lower is better) Translates to: CWLLMSLSLSLLTVCGGPGGCLG*STNPPS Trigger: GGATGGGGGATTGGTTGAGCAGCCGAGGCAACCTCC...AGGACCACCACAAACAGTGAGAAGGGATAGGCTTAAACTCATAAGTAGCCAACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| 3UTR-3UTR CCA 90 bp | TTGTTGGCTACTTATGAGTTTAAGCCTATCCCTTCTCACTGTTTGTGGTGGTCCCTGCCTGATGAAGCTTaGGCTCTGACTCGTATGGCC | + |
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Preference number: 2 (lower is better) Translates to: LLATYEFKPIPSHCLWWSLPDEA*ALTRMA Trigger: GGCCATACGAGTCAGAGCCCAAGCTTCATCAGGCAG...GGACCACCACAAACAGTGAGAAGGGATAGGCTTAAACTCATAAGTAGCCAACAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| 3UTR CAA 90 bp | CATCTACACCAGAGGATTCTGTTCCCAAGAGCTAGAAGGAATCACTaGCCATATAAGTACTCAGTTAGGGGAACAGCCCTGCCTGATGAA | + |
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Preference number: 2 (lower is better) Translates to: HLHQRILFPRARRNH*PYKYSVRGTALPDE Trigger: TTCATCAGGCAGGGCTGTTCCCCTAACTGAGTACTTATATGGCAAGTGATTCCTTCTAGCTCTTGGGAACAGAATCCTCTGGTGTAGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| 3UTR-3UTR CCA 90 bp | CACCTAACAGCACCATCTCTCTTTGCATTCCTCTCAGTGAGATTGTTTAGAATCCCCTATAGCCCGAAGTaGGGAAGAACACACTGGCAA | + |
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Preference number: 2 (lower is better) Translates to: HLTAPSLFAFLSVRLFRIPYSPK*GRTHWQ Trigger: TTGCCAGTGTGTTCTTCCCCACTTCGGGCTATAGGG...GATTCTAAACAATCTCACTGAGAGGAATGCAAAGAGAGATGGTGCTGTTAGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| 3UTR GCA 72 bp | AGGGACATCAACTCTTTAGGTCAACATTTGGGAGGTTaGCTCGGCTGCTCAACCAATCCCCCATCCCCACCC | + |
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Preference number: 3 (lower is better) Translates to: RDINSLGQHLGG*LGCSTNPPSPP Trigger: GGGTGGGGATGGGGGATTGGTTGAGCAGCCGAGGCAACCTCCCAAATGTTGACCTAAAGAGTTGATGTCCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| 3UTR TCA 72 bp | AAAGTCTCTAGGGCTCAGAGCTGGAGATTAAGGTGGTaGCTGCCAGTGGCTACTTGGGCCTGCCAAGCTGTA | + |
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Preference number: 3 (lower is better) Translates to: KVSRAQSWRLRW*LPVATWACQAV Trigger: TACAGCTTGGCAGGCCCAAGTAGCCACTGGCAGTCACCACCTTAATCTCCAGCTCTGAGCCCTAGAGACTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| 3UTR-3UTR CAA 90 bp | TTGTTGGCTACTTATGAGTTTAAGCCTATCCCTTCTCACTGTTTGTGGTGGTCCTCAACATTTGGGAGGTaGCCTCGGCTGCTCAACCAA | + |
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Preference number: 3 (lower is better) Translates to: LLATYEFKPIPSHCLWWSSTFGR*PRLLNQ Trigger: TTGGTTGAGCAGCCGAGGCAACCTCCCAAATGTTGA...GGACCACCACAAACAGTGAGAAGGGATAGGCTTAAACTCATAAGTAGCCAACAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| 3UTR TCA 72 bp | GGAAGAACACACTGGCAACTTCTTTCCCTCCACCCATaGAGTAAACACCCTCAAGGGTTTCTCCATCTAGAA | + |
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Preference number: 3 (lower is better) Translates to: GRTHWQLLSLHP*SKHPQGFLHLE Trigger: TTCTAGATGGAGAAACCCTTGAGGGTGTTTACTTCATGGGTGGAGGGAAAGAAGTTGCCAGTGTGTTCTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| 3UTR TCA 72 bp | CCTTTACTATGTGTCAGCTTTACTGATTTTCAAGCATaGTGTATGGTTAGTTGTTGGCTACTTATGAGTTTA | + |
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Preference number: 3 (lower is better) Translates to: PLLCVSFTDFQA*CMVSCWLLMSL Trigger: TAAACTCATAAGTAGCCAACAACTAACCATACATCATGCTTGAAAATCAGTAAAGCTGACACATAGTAAAGG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR GCA 90 bp | CCATATAAGTACTCAGTTAGGGGAACAGCCCTGCCTGATGAAGCTTGGGCTCTGGGTCTTCAGGGTGGCTaGAACTCTCTCCAGCAGGAC | + |
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Preference number: 4 (lower is better) Translates to: PYKYSVRGTALPDEAWALGLQGG*NSLQQD Trigger: GTCCTGCTGGAGAGAGTTGCAGCCACCCTGAAGACC...CAGAGCCCAAGCTTCATCAGGCAGGGCTGTTCCCCTAACTGAGTACTTATATGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR CCA 90 bp | CACACTGGCAACTTCTTTCCCTCCACCCATGAAGTAAACACCCTCAAGGGTTTCCCTGCAGAGCAGAGATaGCCAAGGCCTCATCCCTCA | + |
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Preference number: 4 (lower is better) Translates to: HTGNFFPSTHEVNTLKGFPAEQR*PRPHPS Trigger: TGAGGGATGAGGCCTTGGCCATCTCTGCTCTGCAGG...GAAACCCTTGAGGGTGTTTACTTCATGGGTGGAGGGAAAGAAGTTGCCAGTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR CCA 90 bp | CCATATAAGTACTCAGTTAGGGGAACAGCCCTGCCTGATGAAGCTTGGGCTCTGGGCATCTTTGAAGAGTaGTGGGAGGAGCTCCATGGG | + |
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Preference number: 4 (lower is better) Translates to: PYKYSVRGTALPDEAWALGIFEE*WEELHG Trigger: CCCATGGAGCTCCTCCCACCACTCTTCAAAGATGCC...CAGAGCCCAAGCTTCATCAGGCAGGGCTGTTCCCCTAACTGAGTACTTATATGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR CCA 90 bp | CACACTGGCAACTTCTTTCCCTCCACCCATGAAGTAAACACCCTCAAGGGTTTCCTGCTTCTCCTCCTCTaGGGTAATAGAGGCAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: HTGNFFPSTHEVNTLKGFLLLLL*GNRGRH Trigger: GTGCCTGCCTCTATTACCCCAGAGGAGGAGAAGCAG...GAAACCCTTGAGGGTGTTTACTTCATGGGTGGAGGGAAAGAAGTTGCCAGTGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR CCA 90 bp | CCTCAGCACCTAACAGCACCATCTCTCTTTGCATTCCTCTCAGTGAGATTGTTTGAGCTGTCGGATGCCTaGACACTGGGACAGGGACTG | + |
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Preference number: 4 (lower is better) Translates to: PQHLTAPSLFAFLSVRLFELSDA*TLGQGL Trigger: CAGTCCCTGTCCCAGTGTCCAGGCATCCGACAGCTC...AAACAATCTCACTGAGAGGAATGCAAAGAGAGATGGTGCTGTTAGGTGCTGAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR GCA 90 bp | CCCACCCACAGTGCAATAGGGCCAATCATCTGTAGACCAAACAAAGGTCAGGTGGTCCAGAAGTCCTTGTaGAAAGCCCGCAAATCCAGA | + |
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Preference number: 4 (lower is better) Translates to: PTHSAIGPIICRPNKGQVVQKSL*KARKSR Trigger: TCTGGATTTGCGGGCTTTGCACAAGGACTTCTGGAC...CACCTGACCTTTGTTTGGTCTACAGATGATTGGCCCTATTGCACTGTGGGTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR CCA 90 bp | AACATGGTTTATTCCATTTACCCTATAGCCCGAAGTGGGGAAGAACACACTGGCCGGATGCCTGGACACTaGGACAGGGACTGCAAGTCT | + |
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Preference number: 4 (lower is better) Translates to: NMVYSIYPIARSGEEHTGRMPGH*DRDCKS Trigger: AGACTTGCAGTCCCTGTCCCAGTGTCCAGGCATCCG...GCCAGTGTGTTCTTCCCCACTTCGGGCTATAGGGTAAATGGAATAAACCATGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR TCA 90 bp | CCCACCCACAGTGCAATAGGGCCAATCATCTGTAGACCAAACAAAGGTCAGGTGTTATGTCGGTCAGAATaGCACCACTCAGGTTCAGGT | + |
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Preference number: 4 (lower is better) Translates to: PTHSAIGPIICRPNKGQVLCRSE*HHSGSG Trigger: ACCTGAACCTGAGTGGTGTCATTCTGACCGACATAA...CACCTGACCTTTGTTTGGTCTACAGATGATTGGCCCTATTGCACTGTGGGTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| 3UTR CAA 72 bp | GAGCTGGAGATTAAGGTGGTGACTGCCAGTGGCTACTaGGGCCTGCCAAGCTGTAACATGGTTTATTCCATT | + |
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Preference number: 4 (lower is better) Translates to: ELEIKVVTASGY*GLPSCNMVYSI Trigger: AATGGAATAAACCATGTTACAGCTTGGCAGGCCCAAGTAGCCACTGGCAGTCACCACCTTAATCTCCAGCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR CCA 90 bp | TGTTGGCTACTTATGAGTTTAAGCCTATCCCTTCTCACTGTTTGTGGTGGTCCTATCTTTGAAGAGTGGTaGGAGGAGCTCCATGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: CWLLMSLSLSLLTVCGGPIFEEW*EELHGQ Trigger: CTGCCCATGGAGCTCCTCCCACCACTCTTCAAAGAT...AGGACCACCACAAACAGTGAGAAGGGATAGGCTTAAACTCATAAGTAGCCAACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR TCA 90 bp | TGTTGGCTACTTATGAGTTTAAGCCTATCCCTTCTCACTGTTTGTGGTGGTCCTTTTTTCTCCTACACTTaGCCCCTGGAGCGCAAGATG | + |
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Preference number: 4 (lower is better) Translates to: CWLLMSLSLSLLTVCGGPFFSYT*PLERKM Trigger: CATCTTGCGCTCCAGGGGTCAAGTGTAGGAGAAAAA...AGGACCACCACAAACAGTGAGAAGGGATAGGCTTAAACTCATAAGTAGCCAACA 47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR GCA 90 bp | AGTTGTTGGCTACTTATGAGTTTAAGCCTATCCCTTCTCACTGTTTGTGGTGGTGGAAAAGGCCAGACCTaGACCATCTTCCTCAGGATG | + |
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Preference number: 4 (lower is better) Translates to: SCWLLMSLSLSLLTVCGGGKGQT*TIFLRM Trigger: CATCCTGAGGAAGATGGTGCAGGTCTGGCCTTTTCC...ACCACCACAAACAGTGAGAAGGGATAGGCTTAAACTCATAAGTAGCCAACAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR GCA 90 bp | TTGTTGGCTACTTATGAGTTTAAGCCTATCCCTTCTCACTGTTTGTGGTGGTCCTTGTGTTCTAGATGCTaGATCGCCTTGCTCAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: LLATYEFKPIPSHCLWWSLCSRC*IALLSS Trigger: GGAGCTGAGCAAGGCGATGCAGCATCTAGAACACAA...GGACCACCACAAACAGTGAGAAGGGATAGGCTTAAACTCATAAGTAGCCAACAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR GCA 90 bp | TGTTGGCTACTTATGAGTTTAAGCCTATCCCTTCTCACTGTTTGTGGTGGTCCTCTGTTGTGTTCTAGATaGTGCATCGCCTTGCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: CWLLMSLSLSLLTVCGGPLLCSR*CIALLS Trigger: GCTGAGCAAGGCGATGCAGCATCTAGAACACAACAG...AGGACCACCACAAACAGTGAGAAGGGATAGGCTTAAACTCATAAGTAGCCAACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR CCA 90 bp | CACACTGGCAACTTCTTTCCCTCCACCCATGAAGTAAACACCCTCAAGGGTTTCTGTATCCAAGGCTCTTaGTTTGAGGTACAGGTCTAT | + |
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Preference number: 4 (lower is better) Translates to: HTGNFFPSTHEVNTLKGFCIQGS*FEVQVY Trigger: ATAGACCTGTACCTCAAACCAAGAGCCTTGGATACA...GAAACCCTTGAGGGTGTTTACTTCATGGGTGGAGGGAAAGAAGTTGCCAGTGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| 3UTR CAA 72 bp | GCTACTTATGAGTTTAAGCCTATCCCTTCTCACTGTTaGTGGTGGTCCTCAGCACCTAACAGCACCATCTCT | + |
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Preference number: 4 (lower is better) Translates to: ATYEFKPIPSHC*WWSSAPNSTIS Trigger: AGAGATGGTGCTGTTAGGTGCTGAGGACCACCACAAACAGTGAGAAGGGATAGGCTTAAACTCATAAGTAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR CCA 90 bp | GCCAGTGGCTACTTGGGCCTGCCAAGCTGTAACATGGTTTATTCCATTTACCCTTCAATGAGTTTTGCTTaGCTTCTATCTTTGGACCTC | + |
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Preference number: 4 (lower is better) Translates to: ASGYLGLPSCNMVYSIYPSMSFA*LLSLDL Trigger: GAGGTCCAAAGATAGAAGCCAAGCAAAACTCATTGA...AGGGTAAATGGAATAAACCATGTTACAGCTTGGCAGGCCCAAGTAGCCACTGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR GCA 90 bp | GCCAGTGGCTACTTGGGCCTGCCAAGCTGTAACATGGTTTATTCCATTTACCCTACTTTCAATGAGTTTTaGTTGGCTTCTATCTTTGGA | + |
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Preference number: 4 (lower is better) Translates to: ASGYLGLPSCNMVYSIYPTFNEF*LASIFG Trigger: TCCAAAGATAGAAGCCAAGCAAAACTCATTGAAAGT...AGGGTAAATGGAATAAACCATGTTACAGCTTGGCAGGCCCAAGTAGCCACTGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR TCA 90 bp | TGTTGGCTACTTATGAGTTTAAGCCTATCCCTTCTCACTGTTTGTGGTGGTCCTATGTTAAGTCGTTTGTaGGTGATGGCATCTTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: CWLLMSLSLSLLTVCGGPMLSRL*VMASLK Trigger: CTTCAAAGATGCCATCACTCACAAACGACTTAACAT...AGGACCACCACAAACAGTGAGAAGGGATAGGCTTAAACTCATAAGTAGCCAACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR CCA 90 bp | CACCTAACAGCACCATCTCTCTTTGCATTCCTCTCAGTGAGATTGTTTAGAATCGCAGTTTGTAATTCCTaGGGTGAGTATTCTGGTCAA | + |
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Preference number: 4 (lower is better) Translates to: HLTAPSLFAFLSVRLFRIAVCNS*GEYSGQ Trigger: TTGACCAGAATACTCACCCCAGGAATTACAAACTGC...GATTCTAAACAATCTCACTGAGAGGAATGCAAAGAGAGATGGTGCTGTTAGGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR GCA 90 bp | CACCTAACAGCACCATCTCTCTTTGCATTCCTCTCAGTGAGATTGTTTAGAATCTTCTTACAGCCAAGCTaGAACAAAGCTTTTCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: HLTAPSLFAFLSVRLFRIFLQPS*NKAFLS Trigger: AGAGAGAAAAGCTTTGTTGCAGCTTGGCTGTAAGAA...GATTCTAAACAATCTCACTGAGAGGAATGCAAAGAGAGATGGTGCTGTTAGGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR CCA 90 bp | CACCTAACAGCACCATCTCTCTTTGCATTCCTCTCAGTGAGATTGTTTAGAATCCAAGATATCCAGGTATaGTGTCTTCATCTTCATCAG | + |
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Preference number: 4 (lower is better) Translates to: HLTAPSLFAFLSVRLFRIQDIQV*CLHLHQ Trigger: CTGATGAAGATGAAGACACCATACCTGGATATCTTG...GATTCTAAACAATCTCACTGAGAGGAATGCAAAGAGAGATGGTGCTGTTAGGTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR CCA 90 bp | AACATGGTTTATTCCATTTACCCTATAGCCCGAAGTGGGGAAGAACACACTGGCATCTTCACAATATTCTaGATAGCTACTGTGTTGATC | + |
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Preference number: 4 (lower is better) Translates to: NMVYSIYPIARSGEEHTGIFTIF*IATVLI Trigger: GATCAACACAGTAGCTATCCAGAATATTGTGAAGAT...GCCAGTGTGTTCTTCCCCACTTCGGGCTATAGGGTAAATGGAATAAACCATGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR CCA 90 bp | TTGTTGGCTACTTATGAGTTTAAGCCTATCCCTTCTCACTGTTTGTGGTGGTCCCTTGGCTTCTATCTTTaGACCTCTCTTTTGTATTTT | + |
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Preference number: 4 (lower is better) Translates to: LLATYEFKPIPSHCLWWSLGFYL*TSLLYF Trigger: AAAATACAAAAGAGAGGTCCAAAGATAGAAGCCAAG...GGACCACCACAAACAGTGAGAAGGGATAGGCTTAAACTCATAAGTAGCCAACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR CAA 90 bp | GAACACACTGGCAACTTCTTTCCCTCCACCCATGAAGTAAACACCCTCAAGGGTCTCAGGTTCAGGTGTTaGAGCTGTCGGATGCCTGGA | + |
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Preference number: 5 (lower is better) Translates to: EHTGNFFPSTHEVNTLKGLRFRC*SCRMPG Trigger: TCCAGGCATCCGACAGCTCAAACACCTGAACCTGAG...ACCCTTGAGGGTGTTTACTTCATGGGTGGAGGGAAAGAAGTTGCCAGTGTGTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR CAA 90 bp | CCATATAAGTACTCAGTTAGGGGAACAGCCCTGCCTGATGAAGCTTGGGCTCTGGAACAACTGGTCCATTaGACCTTTGAGGAAGTCGAT | + |
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Preference number: 5 (lower is better) Translates to: PYKYSVRGTALPDEAWALEQLVH*TFEEVD Trigger: ATCGACTTCCTCAAAGGTCAAATGGACCAGTTGTTC...CAGAGCCCAAGCTTCATCAGGCAGGGCTGTTCCCCTAACTGAGTACTTATATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS GCA 90 bp | TTCAGGTGTTTGAGCTGTCGGATGCCTGGACACTGGGACAGGGACTaGAAGTCTGATTCTGAAATCTTGGAATCAGTAATAGAGAGGATC | + |
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Preference number: 5 (lower is better) Translates to: FRCLSCRMPGHWDRD*KSDSEILESVIERI Trigger: GATCCTCTCTATTACTGATTCCAAGATTTCAGAATCAGACTTGCAGTCCCTGTCCCAGTGTCCAGGCATCCGACAGCTCAAACACCTGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR CAA 90 bp | CATCTAGAAACTTCATCTCTCACTGCTAAATACACATGTCCCAAGGGACATCAATCAGCAGGCTTTGCATaGCGAGCTGTAGGAGTGTGG | + |
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Preference number: 5 (lower is better) Translates to: HLETSSLTAKYTCPKGHQSAGFA*RAVGVW Trigger: CCACACTCCTACAGCTCGCAATGCAAAGCCTGCTGA...TTGATGTCCCTTGGGACATGTGTATTTAGCAGTGAGAGATGAAGTTTCTAGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR CAA 90 bp | CCTCAGCACCTAACAGCACCATCTCTCTTTGCATTCCTCTCAGTGAGATTGTTTCCGCAAATCCAGAACTaGCAGTTTGTAATTCCTGGG | + |
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Preference number: 5 (lower is better) Translates to: PQHLTAPSLFAFLSVRLFPQIQN*QFVIPG Trigger: CCCAGGAATTACAAACTGCAAGTTCTGGATTTGCGG...AAACAATCTCACTGAGAGGAATGCAAAGAGAGATGGTGCTGTTAGGTGCTGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR CAA 90 bp | ATTCATCTACACCAGAGGATTCTGTTCCCAAGAGCTAGAAGGAATCACTTGCCATCCAAGGCTCTTGGTTaGAGGTACAGGTCTATAAAC | + |
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Preference number: 5 (lower is better) Translates to: IHLHQRILFPRARRNHLPSKALG*RYRSIN Trigger: GTTTATAGACCTGTACCTCAAACCAAGAGCCTTGGA...TGGCAAGTGATTCCTTCTAGCTCTTGGGAACAGAATCCTCTGGTGTAGATGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR CAA 90 bp | CCTCAGCACCTAACAGCACCATCTCTCTTTGCATTCCTCTCAGTGAGATTGTTTTTCAATGAGTTTTGCTaGGCTTCTATCTTTGGACCT | + |
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Preference number: 5 (lower is better) Translates to: PQHLTAPSLFAFLSVRLFFNEFC*ASIFGP Trigger: AGGTCCAAAGATAGAAGCCAAGCAAAACTCATTGAA...AAACAATCTCACTGAGAGGAATGCAAAGAGAGATGGTGCTGTTAGGTGCTGAGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR CAA 90 bp | TTGTTGGCTACTTATGAGTTTAAGCCTATCCCTTCTCACTGTTTGTGGTGGTCCTGGATAGCTACTGTGTaGATCTTCAGCTTCTTACAG | + |
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Preference number: 5 (lower is better) Translates to: LLATYEFKPIPSHCLWWSWIATV*IFSFLQ Trigger: CTGTAAGAAGCTGAAGATCAACACAGTAGCTATCCA...GGACCACCACAAACAGTGAGAAGGGATAGGCTTAAACTCATAAGTAGCCAACAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR CAA 90 bp | ATTCATCTACACCAGAGGATTCTGTTCCCAAGAGCTAGAAGGAATCACTTGCCACTTTGGACCTCTCTTTaGTATTTTTCTCCTACACTT | + |
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Preference number: 5 (lower is better) Translates to: IHLHQRILFPRARRNHLPLWTSL*YFSPTL Trigger: AAGTGTAGGAGAAAAATACAAAAGAGAGGTCCAAAG...TGGCAAGTGATTCCTTCTAGCTCTTGGGAACAGAATCCTCTGGTGTAGATGAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS-3UTR CAA 90 bp | AGTTGTTGGCTACTTATGAGTTTAAGCCTATCCCTTCTCACTGTTTGTGGTGGTTCTGATTCTGAAATCTaGGAATCAGTAATAGAGAGG | + |
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Preference number: 5 (lower is better) Translates to: SCWLLMSLSLSLLTVCGGSDSEI*ESVIER Trigger: CCTCTCTATTACTGATTCCAAGATTTCAGAATCAGA...ACCACCACAAACAGTGAGAAGGGATAGGCTTAAACTCATAAGTAGCCAACAACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS TCA 72 bp | AGGGAGAGGTCCTGGAGGTACTGCAGGTTGGAAAACTaGGAGGTGAACTGGCTGACCAGCTGCTTCTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: RERSWRYCRLEN*EVNWLTSCFSS Trigger: GGAGGAGAAGCAGCTGGTCAGCCAGTTCACCTCTCAGTTTTCCAACCTGCAGTACCTCCAGGACCTCTCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS CAA 72 bp | ATGTCGGTCAGAATGACACCACTCAGGTTCAGGTGTTaGAGCTGTCGGATGCCTGGACACTGGGACAGGGAC | + |
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Preference number: 6 (lower is better) Translates to: MSVRMTPLRFRC*SCRMPGHWDRD Trigger: GTCCCTGTCCCAGTGTCCAGGCATCCGACAGCTCAAACACCTGAACCTGAGTGGTGTCATTCTGACCGACAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS GCA 72 bp | GCGACGCTGAACCAGACCGTTCTGTTGTGTTCTAGATaGTGCATCGCCTTGCTCAGCTCCTCTCTAAGCTGT | + |
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Preference number: 6 (lower is better) Translates to: ATLNQTVLLCSR*CIALLSSSLSC Trigger: ACAGCTTAGAGAGGAGCTGAGCAAGGCGATGCAGCATCTAGAACACAACAGAACGGTCTGGTTCAGCGTCGC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS CCA 72 bp | AAGTCGTTTGTGAGTGATGGCATCTTTGAAGAGTGGTaGGAGGAGCTCCATGGGCAGGTCCTGCAGAGCAGA | + |
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Preference number: 6 (lower is better) Translates to: KSFVSDGIFEEW*EELHGQVLQSR Trigger: TCTGCTCTGCAGGACCTGCCCATGGAGCTCCTCCCACCACTCTTCAAAGATGCCATCACTCACAAACGACTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030326.10 ENSMUST00000123854.2 |
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| CDS CCA 72 bp | GTTAAGTCGTTTGTGAGTGATGGCATCTTTGAAGAGTaGTGGGAGGAGCTCCATGGGCAGGTCCTGCAGAGC | + |
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Preference number: 6 (lower is better) Translates to: VKSFVSDGIFEE*WEELHGQVLQS Trigger: GCTCTGCAGGACCTGCCCATGGAGCTCCTCCCACCACTCTTCAAAGATGCCATCACTCACAAACGACTTAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030326.10 ENSMUST00000123854.2 |
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| CDS CAA 90 bp | TCAGGACTTATGTCGGTCAGAATGACACCACTCAGGTTCAGGTGTTaGAGCTGTCGGATGCCTGGACACTGGGACAGGGACTGCAAGTCT | + |
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Preference number: 6 (lower is better) Translates to: SGLMSVRMTPLRFRC*SCRMPGHWDRDCKS Trigger: AGACTTGCAGTCCCTGTCCCAGTGTCCAGGCATCCGACAGCTCAAACACCTGAACCTGAGTGGTGTCATTCTGACCGACATAAGTCCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS CAA 90 bp | ATGCCTGGACACTGGGACAGGGACTGCAAGTCTGATTCTGAAATCTaGGAATCAGTAATAGAGAGGATCTCCAAGGGGACCTCCAGGCAC | + |
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Preference number: 6 (lower is better) Translates to: MPGHWDRDCKSDSEI*ESVIERISKGTSRH Trigger: GTGCCTGGAGGTCCCCTTGGAGATCCTCTCTATTACTGATTCCAAGATTTCAGAATCAGACTTGCAGTCCCTGTCCCAGTGTCCAGGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS CCA 72 bp | AGGTTCAGGTGTTTGAGCTGTCGGATGCCTGGACACTaGGACAGGGACTGCAAGTCTGATTCTGAAATCTTG | + |
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Preference number: 6 (lower is better) Translates to: RFRCLSCRMPGH*DRDCKSDSEIL Trigger: CAAGATTTCAGAATCAGACTTGCAGTCCCTGTCCCAGTGTCCAGGCATCCGACAGCTCAAACACCTGAACCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS TCA 72 bp | ACCTGCACCATCTTCCTCAGGATGTTAAGTCGTTTGTaGGTGATGGCATCTTTGAAGAGTGGTGGGAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: TCTIFLRMLSRL*VMASLKSGGRS Trigger: GCTCCTCCCACCACTCTTCAAAGATGCCATCACTCACAAACGACTTAACATCCTGAGGAAGATGGTGCAGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030326.10 ENSMUST00000123854.2 |
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| CDS CAA 72 bp | CAGACCGTTCTGTTGTGTTCTAGATGCTGCATCGCCTaGCTCAGCTCCTCTCTAAGCTGTTCTAGCCTCTTA | + |
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Preference number: 6 (lower is better) Translates to: QTVLLCSRCCIA*LSSSLSCSSLL Trigger: TAAGAGGCTAGAACAGCTTAGAGAGGAGCTGAGCAAGGCGATGCAGCATCTAGAACACAACAGAACGGTCTG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS GCA 72 bp | GCTACTGTGTTGATCTTCAGCTTCTTACAGCCAAGCTaGAACAAAGCTTTTCTCTCTCTCGCCCACAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: ATVLIFSFLQPS*NKAFLSLAHRK Trigger: CTTCCTGTGGGCGAGAGAGAGAAAAGCTTTGTTGCAGCTTGGCTGTAAGAAGCTGAAGATCAACACAGTAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS CAA 72 bp | CACTGGGACAGGGACTGCAAGTCTGATTCTGAAATCTaGGAATCAGTAATAGAGAGGATCTCCAAGGGGACC | + |
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Preference number: 6 (lower is better) Translates to: HWDRDCKSDSEI*ESVIERISKGT Trigger: GGTCCCCTTGGAGATCCTCTCTATTACTGATTCCAAGATTTCAGAATCAGACTTGCAGTCCCTGTCCCAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS GCA 72 bp | TTGAGCTGTCGGATGCCTGGACACTGGGACAGGGACTaGAAGTCTGATTCTGAAATCTTGGAATCAGTAATA | + |
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Preference number: 6 (lower is better) Translates to: LSCRMPGHWDRD*KSDSEILESVI Trigger: TATTACTGATTCCAAGATTTCAGAATCAGACTTGCAGTCCCTGTCCCAGTGTCCAGGCATCCGACAGCTCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS CAA 90 bp | TCTAGCATTTCCAGAATCTTCACAATATTCTGGATAGCTACTGTGTaGATCTTCAGCTTCTTACAGCCAAGCTGCAACAAAGCTTTTCTC | + |
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Preference number: 6 (lower is better) Translates to: SSISRIFTIFWIATV*IFSFLQPSCNKAFL Trigger: GAGAAAAGCTTTGTTGCAGCTTGGCTGTAAGAAGCTGAAGATCAACACAGTAGCTATCCAGAATATTGTGAAGATTCTGGAAATGCTAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS CCA 72 bp | TCCAGGTCTAGCATTTCCAGAATCTTCACAATATTCTaGATAGCTACTGTGTTGATCTTCAGCTTCTTACAG | + |
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Preference number: 6 (lower is better) Translates to: SRSSISRIFTIF*IATVLIFSFLQ Trigger: CTGTAAGAAGCTGAAGATCAACACAGTAGCTATCCAGAATATTGTGAAGATTCTGGAAATGCTAGACCTGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS CAA 72 bp | TCCAGAATCTTCACAATATTCTGGATAGCTACTGTGTaGATCTTCAGCTTCTTACAGCCAAGCTGCAACAAA | + |
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Preference number: 6 (lower is better) Translates to: SRIFTIFWIATV*IFSFLQPSCNK Trigger: TTTGTTGCAGCTTGGCTGTAAGAAGCTGAAGATCAACACAGTAGCTATCCAGAATATTGTGAAGATTCTGGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS TCA 72 bp | TCTTGGTTTGAGGTACAGGTCTATAAACACTTTCAATaGGTTTTGCTTGGCTTCTATCTTTGGACCTCTCTT | + |
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Preference number: 6 (lower is better) Translates to: SWFEVQVYKHFQ*VLLGFYLWTSL Trigger: AAGAGAGGTCCAAAGATAGAAGCCAAGCAAAACTCATTGAAAGTGTTTATAGACCTGTACCTCAAACCAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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| CDS GCA 72 bp | TTGAGGTACAGGTCTATAAACACTTTCAATGAGTTTTaGTTGGCTTCTATCTTTGGACCTCTCTTTTGTATT | + |
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Preference number: 6 (lower is better) Translates to: LRYRSINTFNEF*LASIFGPLFCI Trigger: AATACAAAAGAGAGGTCCAAAGATAGAAGCCAAGCAAAACTCATTGAAAGTGTTTATAGACCTGTACCTCAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030326.10 |
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