Pregenerated sensors for PRAMEL11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078512Ensembl transcript IDs: ENSMUST00000081645.13, ENSMUST00000105767.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCCTTCCCTACTTCTATGGTCCCTCGTACTCTGAAAGTGCTGGGATaGAGCCCTACAGTTTTCAGATGTAGTTGCTGTTCAAGGGTGGGT | + |
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Preference number: 1 (lower is better) Translates to: PFPTSMVPRTLKVLG*SPTVFRCSCCSRVG Trigger: ACCCACCCTTGAACAGCAACTACATCTGAAAACTGTAGGGCTGCATCCCAGCACTTTCAGAGTACGAGGGACCATAGAAGTAGGGAAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| 3UTR GCA 90 bp | ACTCTGAAAGTGCTGGGATGCAGCCCTACAGTTTTCAGATGTAGTTaGTGTTCAAGGGTGGGTCTTTACTGTAGACATCAGGCTGAAAAT | + |
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Preference number: 1 (lower is better) Translates to: TLKVLGCSPTVFRCS*CSRVGLYCRHQAEN Trigger: ATTTTCAGCCTGATGTCTACAGTAAAGACCCACCCTTGAACAGCAACTACATCTGAAAACTGTAGGGCTGCATCCCAGCACTTTCAGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| 3UTR-3UTR GCA 90 bp | ATAATGAAACAATGCCCTCCTACTCATGTCCATTATGCTCTTTATAATGTCCTCGAGTCACTTGAGACCTaGCTTCCATTTGTCAGAGCC | + |
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Preference number: 2 (lower is better) Translates to: IMKQCPPTHVHYALYNVLESLET*LPFVRA Trigger: GGCTCTGACAAATGGAAGGCAGGTCTCAAGTGACTC...GAGGACATTATAAAGAGCATAATGGACATGAGTAGGAGGGCATTGTTTCATTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| 3UTR GCA 72 bp | GTGCTGGGATGCAGCCCTACAGTTTTCAGATGTAGTTaGTGTTCAAGGGTGGGTCTTTACTGTAGACATCAG | + |
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Preference number: 3 (lower is better) Translates to: VLGCSPTVFRCS*CSRVGLYCRHQ Trigger: CTGATGTCTACAGTAAAGACCCACCCTTGAACAGCAACTACATCTGAAAACTGTAGGGCTGCATCCCAGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| 3UTR GCA 72 bp | ACTTCTATGGTCCCTCGTACTCTGAAAGTGCTGGGATaGAGCCCTACAGTTTTCAGATGTAGTTGCTGTTCA | + |
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Preference number: 3 (lower is better) Translates to: TSMVPRTLKVLG*SPTVFRCSCCS Trigger: TGAACAGCAACTACATCTGAAAACTGTAGGGCTGCATCCCAGCACTTTCAGAGTACGAGGGACCATAGAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| 3UTR GCA 72 bp | AAATGGTGGATGCCATCCACAGGGATAATGAAACAATaGCCTCCTACTCATGTCCATTATGCTCTTTATAAT | + |
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Preference number: 3 (lower is better) Translates to: KWWMPSTGIMKQ*PPTHVHYALYN Trigger: ATTATAAAGAGCATAATGGACATGAGTAGGAGGGCATTGTTTCATTATCCCTGTGGATGGCATCCACCATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| 3UTR CCA 72 bp | GTCTTTACTGTAGACATCAGGCTGAAAATAAGCTCATaGTTTTCCATCTCAACACAACTACCTCAAATCAGA | + |
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Preference number: 3 (lower is better) Translates to: VFTVDIRLKISS*FSISTQLPQIR Trigger: TCTGATTTGAGGTAGTTGTGTTGAGATGGAAAACCATGAGCTTATTTTCAGCCTGATGTCTACAGTAAAGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS-3UTR CCA 90 bp | CAGAGCCAAATGGTGGATGCCATCCACAGGGATAATGAAACAATGCCCTCCTACTCCCACAGGAAGGGTTaGGAAAGGCCATGCTGCCAC | + |
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Preference number: 4 (lower is better) Translates to: QSQMVDAIHRDNETMPSYSHRKG*ERPCCH Trigger: GTGGCAGCATGGCCTTTCCCAACCCTTCCTGTGGGA...GTAGGAGGGCATTGTTTCATTATCCCTGTGGATGGCATCCACCATTTGGCTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS-3UTR CCA 90 bp | CAGAGCCAAATGGTGGATGCCATCCACAGGGATAATGAAACAATGCCCTCCTACTCCAGGTGTTTGAGCTaGTGGGTGCTTGGACACTGG | + |
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Preference number: 4 (lower is better) Translates to: QSQMVDAIHRDNETMPSYSRCLS*WVLGHW Trigger: CCAGTGTCCAAGCACCCACCAGCTCAAACACCTGGA...GTAGGAGGGCATTGTTTCATTATCCCTGTGGATGGCATCCACCATTTGGCTCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS-3UTR CCA 90 bp | TCCACATACTGTAGAGCAGAGTTAATGGCAGAGCCAAATGGTGGATGCCATCCATCGACTTCAGTGAGCTaGGAACACTGGCTCAGCACA | + |
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Preference number: 4 (lower is better) Translates to: STYCRAELMAEPNGGCHPSTSVS*EHWLST Trigger: TGTGCTGAGCCAGTGTTCCCAGCTCACTGAAGTCGA...TGGATGGCATCCACCATTTGGCTCTGCCATTAACTCTGCTCTACAGTATGTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS-3UTR TCA 90 bp | TACTGTAGAGCAGAGTTAATGGCAGAGCCAAATGGTGGATGCCATCCACAGGGATCTGACAGTGTGCAGTaGGTAATAGCAAGGGTCTCT | + |
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Preference number: 4 (lower is better) Translates to: YCRAELMAEPNGGCHPQGSDSVQ*VIARVS Trigger: AGAGACCCTTGCTATTACTCACTGCACACTGTCAGA...TCCCTGTGGATGGCATCCACCATTTGGCTCTGCCATTAACTCTGCTCTACAGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS-3UTR GCA 90 bp | TACTGTAGAGCAGAGTTAATGGCAGAGCCAAATGGTGGATGCCATCCACAGGGAAGATGCTGGAGTTTATaGAGTTTGGAGAACTGGGAA | + |
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Preference number: 4 (lower is better) Translates to: YCRAELMAEPNGGCHPQGRCWSL*SLENWE Trigger: TTCCCAGTTCTCCAAACTGCATAAACTCCAGCATCT...TCCCTGTGGATGGCATCCACCATTTGGCTCTGCCATTAACTCTGCTCTACAGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS-3UTR TCA 90 bp | GACATCAGGCTGAAAATAAGCTCATGGTTTTCCATCTCAACACAACTACCTCAATCCCCTAGGATGGGATaGTTTCCCACTGGTTGGTTC | + |
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Preference number: 4 (lower is better) Translates to: DIRLKISSWFSISTQLPQSPRMG*FPTGWF Trigger: GAACCAACCAGTGGGAAATCATCCCATCCTAGGGGA...TTGAGGTAGTTGTGTTGAGATGGAAAACCATGAGCTTATTTTCAGCCTGATGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS-3UTR CCA 90 bp | ATGCCATCCACAGGGATAATGAAACAATGCCCTCCTACTCATGTCCATTATGCTGTTTCTCCCCTAGGATaGGATGATTTCCCACTGGTT | + |
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Preference number: 4 (lower is better) Translates to: MPSTGIMKQCPPTHVHYAVSPLG*DDFPLV Trigger: AACCAGTGGGAAATCATCCCATCCTAGGGGAGAAAC...AGCATAATGGACATGAGTAGGAGGGCATTGTTTCATTATCCCTGTGGATGGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS-3UTR CCA 90 bp | CAGAGCCAAATGGTGGATGCCATCCACAGGGATAATGAAACAATGCCCTCCTACTGCAGTTTGGAGAACTaGGAAAAGATCTCTGTAAGA | + |
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Preference number: 4 (lower is better) Translates to: QSQMVDAIHRDNETMPSYCSLEN*EKISVR Trigger: TCTTACAGAGATCTTTTCCCAGTTCTCCAAACTGCA...GTAGGAGGGCATTGTTTCATTATCCCTGTGGATGGCATCCACCATTTGGCTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS-3UTR CCA 90 bp | CAGAGCCAAATGGTGGATGCCATCCACAGGGATAATGAAACAATGCCCTCCTACGGAGTTTATGCAGTTTaGAGAACTGGGAAAAGATCT | + |
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Preference number: 4 (lower is better) Translates to: QSQMVDAIHRDNETMPSYGVYAV*RTGKRS Trigger: AGATCTTTTCCCAGTTCTCCAAACTGCATAAACTCC...GTAGGAGGGCATTGTTTCATTATCCCTGTGGATGGCATCCACCATTTGGCTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS-3UTR CCA 90 bp | TACTGTAGAGCAGAGTTAATGGCAGAGCCAAATGGTGGATGCCATCCACAGGGACTTCCTAGGAATGGATaGCTTAAAATGAAGGTGACA | + |
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Preference number: 4 (lower is better) Translates to: YCRAELMAEPNGGCHPQGLPRNG*LKMKVT Trigger: TGTCACCTTCATTTTAAGCCATCCATTCCTAGGAAG...TCCCTGTGGATGGCATCCACCATTTGGCTCTGCCATTAACTCTGCTCTACAGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS-3UTR CCA 90 bp | ATAATGAAACAATGCCCTCCTACTCATGTCCATTATGCTCTTTATAATGTCCTCAGGTGTTTGAGCTGGTaGGTGCTTGGACACTGGGAC | + |
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Preference number: 4 (lower is better) Translates to: IMKQCPPTHVHYALYNVLRCLSW*VLGHWD Trigger: GTCCCAGTGTCCAAGCACCCACCAGCTCAAACACCT...GAGGACATTATAAAGAGCATAATGGACATGAGTAGGAGGGCATTGTTTCATTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS-3UTR CCA 90 bp | ACAGGGATAATGAAACAATGCCCTCCTACTCATGTCCATTATGCTCTTTATAATGGTCATAGGCAGGAATaGCCCCAAACTCCAGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: TGIMKQCPPTHVHYALYNGHRQE*PQTPAS Trigger: AGAAGCTGGAGTTTGGGGCCATTCCTGCCTATGACC...ATTATAAAGAGCATAATGGACATGAGTAGGAGGGCATTGTTTCATTATCCCTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS-3UTR TCA 90 bp | ACAGGGATAATGAAACAATGCCCTCCTACTCATGTCCATTATGCTCTTTATAATAGGGACGGCGGGACATaGGGGAAAGATTCATTTTTA | + |
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Preference number: 4 (lower is better) Translates to: TGIMKQCPPTHVHYALYNRDGGT*GKDSFL Trigger: TAAAAATGAATCTTTCCCTCATGTCCCGCCGTCCCT...ATTATAAAGAGCATAATGGACATGAGTAGGAGGGCATTGTTTCATTATCCCTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS-3UTR CCA 90 bp | ACAGGGATAATGAAACAATGCCCTCCTACTCATGTCCATTATGCTCTTTATAATTCGGCAGAGCAGAGATaGTCAAGGCTTCATCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: TGIMKQCPPTHVHYALYNSAEQR*SRLHLS Trigger: TGAAAGATGAAGCCTTGACCATCTCTGCTCTGCCGA...ATTATAAAGAGCATAATGGACATGAGTAGGAGGGCATTGTTTCATTATCCCTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS-3UTR TCA 90 bp | GTCTTTACTGTAGACATCAGGCTGAAAATAAGCTCATGGTTTTCCATCTCAACAGTATGCAGATTTCCTTaGAAAGGAGTTTCTGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: VFTVDIRLKISSWFSISTVCRFP*KGVSGG Trigger: ACCTCCAGAAACTCCTTTTCAAGGAAATCTGCATAC...TGTTGAGATGGAAAACCATGAGCTTATTTTCAGCCTGATGTCTACAGTAAAGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS-3UTR CCA 90 bp | CCAAGATTCAGTCAGGCAGGCTTATACTTCATAAAAATATGTCCACATACTGTATCTTCAGGCTGTCCATaGACAAGAAGTTCTTCACAA | + |
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Preference number: 4 (lower is better) Translates to: PRFSQAGLYFIKICPHTVSSGCP*TRSSSQ Trigger: TTGTGAAGAACTTCTTGTCCATGGACAGCCTGAAGA...TACAGTATGTGGACATATTTTTATGAAGTATAAGCCTGCCTGACTGAATCTTGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS-3UTR CCA 90 bp | ATAATGAAACAATGCCCTCCTACTCATGTCCATTATGCTCTTTATAATGTCCTCTTTATCGCCAATTCCTaGATTGAGGCTGCATCAAAA | + |
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Preference number: 4 (lower is better) Translates to: IMKQCPPTHVHYALYNVLFIANS*IEAASK Trigger: TTTTGATGCAGCCTCAATCCAGGAATTGGCGATAAA...GAGGACATTATAAAGAGCATAATGGACATGAGTAGGAGGGCATTGTTTCATTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS-3UTR GCA 90 bp | ATAATGAAACAATGCCCTCCTACTCATGTCCATTATGCTCTTTATAATGTCCTCAGCTCAGAACAAAGTTaGACAAATCTGTCTGGAATA | + |
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Preference number: 4 (lower is better) Translates to: IMKQCPPTHVHYALYNVLSSEQS*TNLSGI Trigger: TATTCCAGACAGATTTGTGCAACTTTGTTCTGAGCT...GAGGACATTATAAAGAGCATAATGGACATGAGTAGGAGGGCATTGTTTCATTAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS GCA 90 bp | GGGGCAGGGTACTTCTCCAGGGTCAGCTTTGTGAGGTTGGCAGTATaGTGCAGCAGCTTCTTCAGGCTGTCCATGGACAAGAAGTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: GAGYFSRVSFVRLAV*CSSFFRLSMDKKFF Trigger: GAAGAACTTCTTGTCCATGGACAGCCTGAAGAAGCTGCTGCAGCATACTGCCAACCTCACAAAGCTGACCCTGGAGAAGTACCCTGCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS TCA 90 bp | CCTTCTCTACGTCCCAAGGCCTATCCCAAGGTATGCAGATTTCCTTaGAAAGGAGTTTCTGGAGGTTTTTCATCCGGCCCACGCCAGGGG | + |
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Preference number: 5 (lower is better) Translates to: PSLRPKAYPKVCRFP*KGVSGGFSSGPRQG Trigger: CCCCTGGCGTGGGCCGGATGAAAAACCTCCAGAAACTCCTTTTCAAGGAAATCTGCATACCTTGGGATAGGCCTTGGGACGTAGAGAAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS GCA 90 bp | GCAGGGTACTTCTCCAGGGTCAGCTTTGTGAGGTTGGCAGTATGCTaGAGCAGCTTCTTCAGGCTGTCCATGGACAAGAAGTTCTTCACA | + |
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Preference number: 5 (lower is better) Translates to: AGYFSRVSFVRLAVC*SSFFRLSMDKKFFT Trigger: TGTGAAGAACTTCTTGTCCATGGACAGCCTGAAGAAGCTGCTGCAGCATACTGCCAACCTCACAAAGCTGACCCTGGAGAAGTACCCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS-3UTR CAA 90 bp | CCAAGATTCAGTCAGGCAGGCTTATACTTCATAAAAATATGTCCACATACTGTACTCCCACAGGAAGGGTaGGGAAAGGCCATGCTGCCA | + |
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Preference number: 5 (lower is better) Translates to: PRFSQAGLYFIKICPHTVLPQEG*GKAMLP Trigger: TGGCAGCATGGCCTTTCCCAACCCTTCCTGTGGGAG...TACAGTATGTGGACATATTTTTATGAAGTATAAGCCTGCCTGACTGAATCTTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS-3UTR CAA 90 bp | CCAAGATTCAGTCAGGCAGGCTTATACTTCATAAAAATATGTCCACATACTGTACTGAGGTCCAGGTGTTaGAGCTGGTGGGTGCTTGGA | + |
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Preference number: 5 (lower is better) Translates to: PRFSQAGLYFIKICPHTVLRSRC*SWWVLG Trigger: TCCAAGCACCCACCAGCTCAAACACCTGGACCTCAG...TACAGTATGTGGACATATTTTTATGAAGTATAAGCCTGCCTGACTGAATCTTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS GCA 90 bp | CTGATTTGCCAGTCCATGAGCATACAGCCTTTCAATTTTAATGTCTaGAGAGTAGCTGTCAGTCTTTCTAGCAGGCTTCCTAGGAATGGA | + |
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Preference number: 5 (lower is better) Translates to: LICQSMSIQPFNFNV*RVAVSLSSRLPRNG Trigger: TCCATTCCTAGGAAGCCTGCTAGAAAGACTGACAGCTACTCTGCAGACATTAAAATTGAAAGGCTGTATGCTCATGGACTGGCAAATCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS-3UTR CAA 90 bp | ATGCCATCCACAGGGATAATGAAACAATGCCCTCCTACTCATGTCCATTATGCTAAATATTTTAGGTATTaGGAGGGACGGCGGGACATG | + |
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Preference number: 5 (lower is better) Translates to: MPSTGIMKQCPPTHVHYAKYFRY*EGRRDM Trigger: CATGTCCCGCCGTCCCTCCAAATACCTAAAATATTT...AGCATAATGGACATGAGTAGGAGGGCATTGTTTCATTATCCCTGTGGATGGCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS TCA 90 bp | AAGGGTATATATATCCCAGCGTGTGTTTATCGCCAATTCCTGGATTaGGGCTGCATCAAAAACCTTCAAAATATTCAGTGGGTCATAGGC | + |
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Preference number: 5 (lower is better) Translates to: KGIYIPACVYRQFLD*GCIKNLQNIQWVIG Trigger: GCCTATGACCCACTGAATATTTTGAAGGTTTTTGATGCAGCCTCAATCCAGGAATTGGCGATAAACACACGCTGGGATATATATACCCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS CCA 90 bp | GATGCAAGGGTATATATATCCCAGCGTGTGTTTATCGCCAATTCCTaGATTGAGGCTGCATCAAAAACCTTCAAAATATTCAGTGGGTCA | + |
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Preference number: 5 (lower is better) Translates to: DARVYISQRVFIANS*IEAASKTFKIFSGS Trigger: TGACCCACTGAATATTTTGAAGGTTTTTGATGCAGCCTCAATCCAGGAATTGGCGATAAACACACGCTGGGATATATATACCCTTGCATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS-3UTR CAA 90 bp | AATACTCCAAGATTCAGTCAGGCAGGCTTATACTTCATAAAAATATGTCCACATAAGCTCAGAACAAAGTaGCACAAATCTGTCTGGAAT | + |
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Preference number: 5 (lower is better) Translates to: NTPRFSQAGLYFIKICPHKLRTK*HKSVWN Trigger: ATTCCAGACAGATTTGTGCAACTTTGTTCTGAGCTT...ATGTGGACATATTTTTATGAAGTATAAGCCTGCCTGACTGAATCTTGGAGTATT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105767.2 |
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| CDS CAA 72 bp | GGGGCAGGGTACTTCTCCAGGGTCAGCTTTGTGAGGTaGGCAGTATGCTGCAGCAGCTTCTTCAGGCTGTCC | + |
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Preference number: 6 (lower is better) Translates to: GAGYFSRVSFVR*AVCCSSFFRLS Trigger: GGACAGCCTGAAGAAGCTGCTGCAGCATACTGCCAACCTCACAAAGCTGACCCTGGAGAAGTACCCTGCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS CCA 72 bp | GCTGGCAGGGGAAGGGCCTACAAAGTAGACCTGCTTTaGCTGCCTTACACCCTTGAGTGTGTCCATAAGCTC | + |
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Preference number: 6 (lower is better) Translates to: AGRGRAYKVDLL*LPYTLECVHKL Trigger: GAGCTTATGGACACACTCAAGGGTGTAAGGCAGCCAAAGCAGGTCTACTTTGTAGGCCCTTCCCCTGCCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000081645.13 |
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| CDS GCA 72 bp | CTGGTGAATGCATCCTTGAAGAGTGGTGGGAAGAGTTaGACAGGCAGGTTCGGCAGAGCAGAGATGGTCAAG | + |
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Preference number: 6 (lower is better) Translates to: LVNASLKSGGKS*TGRFGRAEMVK Trigger: CTTGACCATCTCTGCTCTGCCGAACCTGCCTGTGCAACTCTTCCCACCACTCTTCAAGGATGCATTCACCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS CAA 90 bp | ACTTCATTAGGGGCAGGGTACTTCTCCAGGGTCAGCTTTGTGAGGTaGGCAGTATGCTGCAGCAGCTTCTTCAGGCTGTCCATGGACAAG | + |
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Preference number: 6 (lower is better) Translates to: TSLGAGYFSRVSFVR*AVCCSSFFRLSMDK Trigger: CTTGTCCATGGACAGCCTGAAGAAGCTGCTGCAGCATACTGCCAACCTCACAAAGCTGACCCTGGAGAAGTACCCTGCCCCTAATGAAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS GCA 72 bp | TTCTCCAGGGTCAGCTTTGTGAGGTTGGCAGTATGCTaGAGCAGCTTCTTCAGGCTGTCCATGGACAAGAAG | + |
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Preference number: 6 (lower is better) Translates to: FSRVSFVRLAVC*SSFFRLSMDKK Trigger: CTTCTTGTCCATGGACAGCCTGAAGAAGCTGCTGCAGCATACTGCCAACCTCACAAAGCTGACCCTGGAGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS GCA 72 bp | TACTTCTCCAGGGTCAGCTTTGTGAGGTTGGCAGTATaGTGCAGCAGCTTCTTCAGGCTGTCCATGGACAAG | + |
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Preference number: 6 (lower is better) Translates to: YFSRVSFVRLAV*CSSFFRLSMDK Trigger: CTTGTCCATGGACAGCCTGAAGAAGCTGCTGCAGCATACTGCCAACCTCACAAAGCTGACCCTGGAGAAGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS CCA 72 bp | AAGGTGACACCACTGAGGTCCAGGTGTTTGAGCTGGTaGGTGCTTGGACACTGGGACAGATACCTCATATCT | + |
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Preference number: 6 (lower is better) Translates to: KVTPLRSRCLSW*VLGHWDRYLIS Trigger: AGATATGAGGTATCTGTCCCAGTGTCCAAGCACCCACCAGCTCAAACACCTGGACCTCAGTGGTGTCACCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS CCA 72 bp | ATGAAGGTGACACCACTGAGGTCCAGGTGTTTGAGCTaGTGGGTGCTTGGACACTGGGACAGATACCTCATA | + |
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Preference number: 6 (lower is better) Translates to: MKVTPLRSRCLS*WVLGHWDRYLI Trigger: TATGAGGTATCTGTCCCAGTGTCCAAGCACCCACCAGCTCAAACACCTGGACCTCAGTGGTGTCACCTTCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS CCA 72 bp | AGGTCCAGGTGTTTGAGCTGGTGGGTGCTTGGACACTaGGACAGATACCTCATATCTGATTCTGACAGTGTG | + |
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Preference number: 6 (lower is better) Translates to: RSRCLSWWVLGH*DRYLISDSDSV Trigger: CACACTGTCAGAATCAGATATGAGGTATCTGTCCCAGTGTCCAAGCACCCACCAGCTCAAACACCTGGACCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS CAA 72 bp | CTTAAAATGAAGGTGACACCACTGAGGTCCAGGTGTTaGAGCTGGTGGGTGCTTGGACACTGGGACAGATAC | + |
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Preference number: 6 (lower is better) Translates to: LKMKVTPLRSRC*SWWVLGHWDRY Trigger: GTATCTGTCCCAGTGTCCAAGCACCCACCAGCTCAAACACCTGGACCTCAGTGGTGTCACCTTCATTTTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS TCA 72 bp | CGTCCCAAGGCCTATCCCAAGGTATGCAGATTTCCTTaGAAAGGAGTTTCTGGAGGTTTTTCATCCGGCCCA | + |
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Preference number: 6 (lower is better) Translates to: RPKAYPKVCRFP*KGVSGGFSSGP Trigger: TGGGCCGGATGAAAAACCTCCAGAAACTCCTTTTCAAGGAAATCTGCATACCTTGGGATAGGCCTTGGGACG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS CAA 90 bp | AATGGATGGCTTAAAATGAAGGTGACACCACTGAGGTCCAGGTGTTaGAGCTGGTGGGTGCTTGGACACTGGGACAGATACCTCATATCT | + |
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Preference number: 6 (lower is better) Translates to: NGWLKMKVTPLRSRC*SWWVLGHWDRYLIS Trigger: AGATATGAGGTATCTGTCCCAGTGTCCAAGCACCCACCAGCTCAAACACCTGGACCTCAGTGGTGTCACCTTCATTTTAAGCCATCCATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS CAA 72 bp | CTCTCCTTGGCCCACCGATACAAATATTTTAGGTATTaGGAGGGACGGCGGGACATGAGGGAAAGATTCATT | + |
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Preference number: 6 (lower is better) Translates to: LSLAHRYKYFRY*EGRRDMRERFI Trigger: AATGAATCTTTCCCTCATGTCCCGCCGTCCCTCCAAATACCTAAAATATTTGTATCGGTGGGCCAAGGAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS CAA 90 bp | TGGCTGCCTTACACCCTTGAGTGTGTCCATAAGCTCAGAACAAAGTaGCACAAATCTGTCTGGAATAACACCATCACTGTCATCATAGAC | + |
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Preference number: 6 (lower is better) Translates to: WLPYTLECVHKLRTK*HKSVWNNTITVIID Trigger: GTCTATGATGACAGTGATGGTGTTATTCCAGACAGATTTGTGCAACTTTGTTCTGAGCTTATGGACACACTCAAGGGTGTAAGGCAGCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS TCA 72 bp | GACAGATACCTCATATCTGATTCTGACAGTGTGCAGTaGGTAATAGCAAGGGTCTCTAATGGACTCTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: DRYLISDSDSVQ*VIARVSNGLSK Trigger: CTTTGAGAGTCCATTAGAGACCCTTGCTATTACTCACTGCACACTGTCAGAATCAGATATGAGGTATCTGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS GCA 72 bp | ACACCCTTGAGTGTGTCCATAAGCTCAGAACAAAGTTaGACAAATCTGTCTGGAATAACACCATCACTGTCA | + |
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Preference number: 6 (lower is better) Translates to: TPLSVSISSEQS*TNLSGITPSLS Trigger: TGACAGTGATGGTGTTATTCCAGACAGATTTGTGCAACTTTGTTCTGAGCTTATGGACACACTCAAGGGTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS CAA 72 bp | TACACCCTTGAGTGTGTCCATAAGCTCAGAACAAAGTaGCACAAATCTGTCTGGAATAACACCATCACTGTC | + |
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Preference number: 6 (lower is better) Translates to: YTLECVHKLRTK*HKSVWNNTITV Trigger: GACAGTGATGGTGTTATTCCAGACAGATTTGTGCAACTTTGTTCTGAGCTTATGGACACACTCAAGGGTGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS CAA 90 bp | CAAGGGTATATATATCCCAGCGTGTGTTTATCGCCAATTCCTGGATaGAGGCTGCATCAAAAACCTTCAAAATATTCAGTGGGTCATAGG | + |
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Preference number: 6 (lower is better) Translates to: QGYIYPSVCLSPIPG*RLHQKPSKYSVGHR Trigger: CCTATGACCCACTGAATATTTTGAAGGTTTTTGATGCAGCCTCAATCCAGGAATTGGCGATAAACACACGCTGGGATATATATACCCTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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| CDS CAA 72 bp | ATATATCCCAGCGTGTGTTTATCGCCAATTCCTGGATaGAGGCTGCATCAAAAACCTTCAAAATATTCAGTG | + |
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Preference number: 6 (lower is better) Translates to: IYPSVCLSPIPG*RLHQKPSKYSV Trigger: CACTGAATATTTTGAAGGTTTTTGATGCAGCCTCAATCCAGGAATTGGCGATAAACACACGCTGGGATATAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000081645.13 ENSMUST00000105767.2 |
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