Pregenerated sensors for PRAMEL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041805Ensembl transcript IDs: ENSMUST00000037419.4
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGGGGAGGGGGAGAGAAGAGGTCAGCCATAGATGCATGAGCCTGTaGCTCCAGCACAGGGACTGGCAGACCTATAGGAGCCCTCTGGCT | + |
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Preference number: 1 (lower is better) Translates to: EGRGREEVSHRCMSL*LQHRDWQTYRSPLA Trigger: AGCCAGAGGGCTCCTATAGGTCTGCCAGTCCCTGTGCTGGAGTCACAGGCTCATGCATCTATGGCTGACCTCTTCTCTCCCCCTCCCCTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| 3UTR CCA 90 bp | GCCTGTGACTCCAGCACAGGGACTGGCAGACCTATAGGAGCCCTCTaGCTAACAGTCCTAGGTCTAGGTGAACCATCAAGCTTCTGGTTC | + |
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Preference number: 1 (lower is better) Translates to: ACDSSTGTGRPIGAL*LTVLGLGEPSSFWF Trigger: GAACCAGAAGCTTGATGGTTCACCTAGACCTAGGACTGTTAGCCAGAGGGCTCCTATAGGTCTGCCAGTCCCTGTGCTGGAGTCACAGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| 3UTR TCA 90 bp | TGGAGGAATGCCCTTTTGTACCTGCCCAACCAGAACCCACTCCCATaGCTTCTGTCAATGTGTCCCACATTCCCTATGTCAAATACTCTC | + |
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Preference number: 1 (lower is better) Translates to: WRNALLYLPNQNPLP*LLSMCPTFPMSNTL Trigger: GAGAGTATTTGACATAGGGAATGTGGGACACATTGACAGAAGTCATGGGAGTGGGTTCTGGTTGGGCAGGTACAAAAGGGCATTCCTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| 3UTR GCA 90 bp | TGTCAATGTGTCCCACATTCCCTATGTCAAATACTCTCACTTGTTTaGACTCTAGCATCAACTTTCTCTTCTCACTCGCAAGAACTGCAG | + |
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Preference number: 1 (lower is better) Translates to: CQCVPHSLCQILSLV*TLASTFSSHSQELQ Trigger: CTGCAGTTCTTGCGAGTGAGAAGAGAAAGTTGATGCTAGAGTGCAAACAAGTGAGAGTATTTGACATAGGGAATGTGGGACACATTGACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| 3UTR CAA 90 bp | CTGTCAATGTGTCCCACATTCCCTATGTCAAATACTCTCACTTGTTaGCACTCTAGCATCAACTTTCTCTTCTCACTCGCAAGAACTGCA | + |
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Preference number: 2 (lower is better) Translates to: LSMCPTFPMSNTLTC*HSSINFLFSLARTA Trigger: TGCAGTTCTTGCGAGTGAGAAGAGAAAGTTGATGCTAGAGTGCAAACAAGTGAGAGTATTTGACATAGGGAATGTGGGACACATTGACAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| 3UTR-3UTR TCA 90 bp | CACCTGACGTTTAACCACAGCCTCATTTGTAGACACAGTTCATTGACCACAAAATTAGAGTTACATGTCTaGGTGTTTCACCTACATGTA | + |
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Preference number: 2 (lower is better) Translates to: HLTFNHSLICRHSSLTTKLELHV*VFHLHV Trigger: TACATGTAGGTGAAACACTCAGACATGTAACTCTAA...TTTTGTGGTCAATGAACTGTGTCTACAAATGAGGCTGTGGTTAAACGTCAGGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| 3UTR-3UTR GCA 90 bp | CACCTGACGTTTAACCACAGCCTCATTTGTAGACACAGTTCATTGACCACAAAAATACTCTCACTTGTTTaGACTCTAGCATCAACTTTC | + |
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Preference number: 2 (lower is better) Translates to: HLTFNHSLICRHSSLTTKILSLV*TLASTF Trigger: GAAAGTTGATGCTAGAGTGCAAACAAGTGAGAGTAT...TTTTGTGGTCAATGAACTGTGTCTACAAATGAGGCTGTGGTTAAACGTCAGGTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| 3UTR TCA 72 bp | AGGGGAGGGGGAGAGAAGAGGTCAGCCATAGATGCATaGGCCTGTGACTCCAGCACAGGGACTGGCAGACCT | + |
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Preference number: 3 (lower is better) Translates to: RGGGEKRSAIDA*ACDSSTGTGRP Trigger: AGGTCTGCCAGTCCCTGTGCTGGAGTCACAGGCTCATGCATCTATGGCTGACCTCTTCTCTCCCCCTCCCCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| 3UTR CCA 72 bp | TCCAGCACAGGGACTGGCAGACCTATAGGAGCCCTCTaGCTAACAGTCCTAGGTCTAGGTGAACCATCAAGC | + |
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Preference number: 3 (lower is better) Translates to: SSTGTGRPIGAL*LTVLGLGEPSS Trigger: GCTTGATGGTTCACCTAGACCTAGGACTGTTAGCCAGAGGGCTCCTATAGGTCTGCCAGTCCCTGTGCTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| 3UTR GCA 72 bp | CCACATGTTAAAGGAACTACAGGGAACCAGGTCTGGTaGTATAAGCCTATACTCAGCACTCAGAAGATCAAA | + |
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Preference number: 3 (lower is better) Translates to: PHVKGTTGNQVW*YKPILSTQKIK Trigger: TTTGATCTTCTGAGTGCTGAGTATAGGCTTATAGCACCAGACCTGGTTCCCTGTAGTTCCTTTAACATGTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| 3UTR GCA 72 bp | GTCCCACATTCCCTATGTCAAATACTCTCACTTGTTTaGACTCTAGCATCAACTTTCTCTTCTCACTCGCAA | + |
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Preference number: 3 (lower is better) Translates to: VPHSLCQILSLV*TLASTFSSHSQ Trigger: TTGCGAGTGAGAAGAGAAAGTTGATGCTAGAGTGCAAACAAGTGAGAGTATTTGACATAGGGAATGTGGGAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR GCA 90 bp | TTAAAGGAACTACAGGGAACCAGGTCTGGTGCTATAAGCCTATACTCAGCACTCCTTGCAGCTTGCACCTaGTGTGGGGAACTTTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: LKELQGTRSGAISLYSALLAACT*CGELSG Trigger: CCCAGAAAGTTCCCCACAGCAGGTGCAAGCTGCAAG...GAGTGCTGAGTATAGGCTTATAGCACCAGACCTGGTTCCCTGTAGTTCCTTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR CCA 90 bp | AAATACTGGGTGCTGGCTGCCTCAACTAGACATTCAGTCTCATCAGTACAAATCATGGCCCACCACTGCTaGATTCTCACTGCAGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: KYWVLAASTRHSVSSVQIMAHHC*ILTAAS Trigger: GCTGGCTGCAGTGAGAATCCAGCAGTGGTGGGCCAT...GATTTGTACTGATGAGACTGAATGTCTAGTTGAGGCAGCCAGCACCCAGTATTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR TCA 90 bp | GGGGAATCAAACCCAGGTACTCTACAAAAGCATCAAGTGCTCTCAACTGATAAGCTAGTGGGCTTTCCTTaGGGACCAAGTCTACCAGCA | + |
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Preference number: 4 (lower is better) Translates to: GESNPGTLQKHQVLSTDKLVGFP*GPSLPA Trigger: TGCTGGTAGACTTGGTCCTCAAGGAAAGCCCACTAG...CTTATCAGTTGAGAGCACTTGATGCTTTTGTAGAGTACCTGGGTTTGATTCCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR TCA 90 bp | GGGGAATCAAACCCAGGTACTCTACAAAAGCATCAAGTGCTCTCAACTGATAAGCTGTTATCCACCCACTaGACGAGGAAGGACTCTGTG | + |
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Preference number: 4 (lower is better) Translates to: GESNPGTLQKHQVLSTDKLLSTH*TRKDSV Trigger: CACAGAGTCCTTCCTCGTTCAGTGGGTGGATAACAG...CTTATCAGTTGAGAGCACTTGATGCTTTTGTAGAGTACCTGGGTTTGATTCCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR GCA 90 bp | CACCTGACGTTTAACCACAGCCTCATTTGTAGACACAGTTCATTGACCACAAAACCAGCACTTGCAGCTTaGACCTGCTGTGGGGAACTT | + |
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Preference number: 4 (lower is better) Translates to: HLTFNHSLICRHSSLTTKPALAA*TCCGEL Trigger: AAGTTCCCCACAGCAGGTGCAAGCTGCAAGTGCTGG...TTTTGTGGTCAATGAACTGTGTCTACAAATGAGGCTGTGGTTAAACGTCAGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR CCA 90 bp | CTTTCTCTTCTCACTCGCAAGAACTGCAGTCTAAAAGCATGTGTTGTGCATACTCCAGTTCCTGGAGTGTaGGTGGAGTCTTGCAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: LSLLTRKNCSLKACVVHTPVPGV*VESCSS Trigger: TGAGCTGCAAGACTCCACCCACACTCCAGGAACTGG...AGTATGCACAACACATGCTTTTAGACTGCAGTTCTTGCGAGTGAGAAGAGAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR CCA 90 bp | CTTAGCAGTGTCTGTCATAGAAATACTGGGTGCTGGCTGCCTCAACTAGACATTTACCAGCACCTTCACTaGCTGTTTCACCTCTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: LSSVCHRNTGCWLPQLDIYQHLH*LFHLCS Trigger: GGAACAGAGGTGAAACAGCCAGTGAAGGTGCTGGTA...AATGTCTAGTTGAGGCAGCCAGCACCCAGTATTTCTATGACAGACACTGCTAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR CCA 90 bp | ACTACAGGGAACCAGGTCTGGTGCTATAAGCCTATACTCAGCACTCAGAAGATCTCCAGATGCAGGATCTaGAGGCATTTCAGTTTGAGG | + |
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Preference number: 4 (lower is better) Translates to: TTGNQVWCYKPILSTQKISRCRI*RHFSLR Trigger: CCTCAAACTGAAATGCCTCCAGATCCTGCATCTGGA...GATCTTCTGAGTGCTGAGTATAGGCTTATAGCACCAGACCTGGTTCCCTGTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR TCA 90 bp | CATGACTTCTGTCAATGTGTCCCACATTCCCTATGTCAAATACTCTCACTTGTTAGGCAGTCTTCCTACTaGTCATGGCCCCCAGAGGAA | + |
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Preference number: 4 (lower is better) Translates to: HDFCQCVPHSLCQILSLVRQSSY*SWPPEE Trigger: TTCCTCTGGGGGCCATGATCAGTAGGAAGACTGCCT...AACAAGTGAGAGTATTTGACATAGGGAATGTGGGACACATTGACAGAAGTCATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR GCA 90 bp | CTTAGCAGTGTCTGTCATAGAAATACTGGGTGCTGGCTGCCTCAACTAGACATTGACATAGCCCAGATCTaGAGCTTGCAACAGCACAAA | + |
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Preference number: 4 (lower is better) Translates to: LSSVCHRNTGCWLPQLDIDIAQI*SLQQHK Trigger: TTTGTGCTGTTGCAAGCTGCAGATCTGGGCTATGTC...AATGTCTAGTTGAGGCAGCCAGCACCCAGTATTTCTATGACAGACACTGCTAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR GCA 90 bp | GCTAGAGTTTATTGTCTACTCATCCATATATTCCTGGTTCAATTTGCTAAGCTCAGCGCAGGTTCCTCATaGGACCCAAGTAAGGGGCGA | + |
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Preference number: 4 (lower is better) Translates to: ARVYCLLIHIFLVQFAKLSAGSS*DPSKGR Trigger: TCGCCCCTTACTTGGGTCGCATGAGGAACCTGCGCT...GAGCTTAGCAAATTGAACCAGGAATATATGGATGAGTAGACAATAAACTCTAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR CCA 90 bp | AAAGGAACTACAGGGAACCAGGTCTGGTGCTATAAGCCTATACTCAGCACTCAGCGTATCTTTGACTGTTaGGATTTCTGCTTGACAACG | + |
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Preference number: 4 (lower is better) Translates to: KGTTGNQVWCYKPILSTQRIFDC*DFCLTT Trigger: CGTTGTCAAGCAGAAATCCCAACAGTCAAAGATACG...CTGAGTGCTGAGTATAGGCTTATAGCACCAGACCTGGTTCCCTGTAGTTCCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR TCA 90 bp | ACTCAGAAGATCAAAGTAGAAGAACCAGCAAATAGCATAAAACAAGTTTGTTCCAGAGGTGAGAGAGGATaGGGCAGCGCAGGTTCCTCA | + |
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Preference number: 4 (lower is better) Translates to: TQKIKVEEPANSIKQVCSRGERG*GSAGSS Trigger: TGAGGAACCTGCGCTGCCTCATCCTCTCTCACCTCT...GGAACAAACTTGTTTTATGCTATTTGCTGGTTCTTCTACTTTGATCTTCTGAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR TCA 90 bp | GGGGAATCAAACCCAGGTACTCTACAAAAGCATCAAGTGCTCTCAACTGATAAGGTTGGGATTTCTGCTTaGCAACGTTATATGCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: GESNPGTLQKHQVLSTDKVGISA*QRYMPA Trigger: AGCTGGCATATAACGTTGTCAAGCAGAAATCCCAAC...CTTATCAGTTGAGAGCACTTGATGCTTTTGTAGAGTACCTGGGTTTGATTCCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| 3UTR CAA 72 bp | TGTCCCACATTCCCTATGTCAAATACTCTCACTTGTTaGCACTCTAGCATCAACTTTCTCTTCTCACTCGCA | + |
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Preference number: 4 (lower is better) Translates to: CPTFPMSNTLTC*HSSINFLFSLA Trigger: TGCGAGTGAGAAGAGAAAGTTGATGCTAGAGTGCAAACAAGTGAGAGTATTTGACATAGGGAATGTGGGACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR TCA 90 bp | CTTTCTCTTCTCACTCGCAAGAACTGCAGTCTAAAAGCATGTGTTGTGCATACTTTCTGCAGGCCTTTTTaGACAGTGATGGGAAGAAAA | + |
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Preference number: 4 (lower is better) Translates to: LSLLTRKNCSLKACVVHTFCRPF*TVMGRK Trigger: TTTTCTTCCCATCACTGTTCAAAAAGGCCTGCAGAA...AGTATGCACAACACATGCTTTTAGACTGCAGTTCTTGCGAGTGAGAAGAGAAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR GCA 90 bp | CACCTGACGTTTAACCACAGCCTCATTTGTAGACACAGTTCATTGACCACAAAAGACTGTTGGGATTTCTaGTTGACAACGTTATATGCC | + |
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Preference number: 4 (lower is better) Translates to: HLTFNHSLICRHSSLTTKDCWDF*LTTLYA Trigger: GGCATATAACGTTGTCAAGCAGAAATCCCAACAGTC...TTTTGTGGTCAATGAACTGTGTCTACAAATGAGGCTGTGGTTAAACGTCAGGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR CCA 90 bp | GCTAGAGTTTATTGTCTACTCATCCATATATTCCTGGTTCAATTTGCTAAGCTCGGCTCTGGGCTCAAATaGGTCAGTTTGACCCATTTC | + |
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Preference number: 4 (lower is better) Translates to: ARVYCLLIHIFLVQFAKLGSGLK*VSLTHF Trigger: GAAATGGGTCAAACTGACCCATTTGAGCCCAGAGCC...GAGCTTAGCAAATTGAACCAGGAATATATGGATGAGTAGACAATAAACTCTAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR CCA 90 bp | ACTCAGAAGATCAAAGTAGAAGAACCAGCAAATAGCATAAAACAAGTTTGTTCCCTGTGGGGAACTTTCTaGGAAAGCAAGGCATCAAGC | + |
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Preference number: 4 (lower is better) Translates to: TQKIKVEEPANSIKQVCSLWGTF*ESKASS Trigger: GCTTGATGCCTTGCTTTCCCAGAAAGTTCCCCACAG...GGAACAAACTTGTTTTATGCTATTTGCTGGTTCTTCTACTTTGATCTTCTGAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR CCA 90 bp | GCTAGAGTTTATTGTCTACTCATCCATATATTCCTGGTTCAATTTGCTAAGCTCTATGAGGCTGAGAAATaGCCTCAAACTCCAGACCAC | + |
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Preference number: 4 (lower is better) Translates to: ARVYCLLIHIFLVQFAKLYEAEK*PQTPDH Trigger: GTGGTCTGGAGTTTGAGGCCATTTCTCAGCCTCATA...GAGCTTAGCAAATTGAACCAGGAATATATGGATGAGTAGACAATAAACTCTAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR GCA 90 bp | CACCTGACGTTTAACCACAGCCTCATTTGTAGACACAGTTCATTGACCACAAAAGTTTTAGCTGACTTGTaGACTGGAACTCAGATATAT | + |
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Preference number: 4 (lower is better) Translates to: HLTFNHSLICRHSSLTTKVLADL*TGTQIY Trigger: ATATATCTGAGTTCCAGTGCACAAGTCAGCTAAAAC...TTTTGTGGTCAATGAACTGTGTCTACAAATGAGGCTGTGGTTAAACGTCAGGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR TCA 90 bp | ACTCAGAAGATCAAAGTAGAAGAACCAGCAAATAGCATAAAACAAGTTTGTTCCAATAGCTCATCCAGATaGCCCTCTAGGAAGAAGACA | + |
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Preference number: 4 (lower is better) Translates to: TQKIKVEEPANSIKQVCSNSSSR*PSRKKT Trigger: TGTCTTCTTCCTAGAGGGTCATCTGGATGAGCTATT...GGAACAAACTTGTTTTATGCTATTTGCTGGTTCTTCTACTTTGATCTTCTGAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS GCA 90 bp | GTTTCACCTCTGTTCCCGAATGGCCCACCACTGCTGGATTCTCACTaGAGCCAGCAGTCCCAAACACAGGCAACCTGTTCCACAGCTTCA | + |
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Preference number: 5 (lower is better) Translates to: VSPLFPNGPPLLDSH*SQQSQTQATCSTAS Trigger: TGAAGCTGTGGAACAGGTTGCCTGTGTTTGGGACTGCTGGCTGCAGTGAGAATCCAGCAGTGGTGGGCCATTCGGGAACAGAGGTGAAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS TCA 90 bp | AGGGTCTCTAAGGGTGTCTTCAGCCACCAGAATAGCTCATCCAGATaGCCCTCTAGGAAGAAGACAGTATCCAGATGCAGGATCTGGAGG | + |
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Preference number: 5 (lower is better) Translates to: RVSKGVFSHQNSSSR*PSRKKTVSRCRIWR Trigger: CCTCCAGATCCTGCATCTGGATACTGTCTTCTTCCTAGAGGGTCATCTGGATGAGCTATTCTGGTGGCTGAAGACACCCTTAGAGACCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR CAA 90 bp | ACTACAGGGAACCAGGTCTGGTGCTATAAGCCTATACTCAGCACTCAGAAGATCTCTAGTGGGCTTTCCTaGAGGACCAAGTCTACCAGC | + |
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Preference number: 5 (lower is better) Translates to: TTGNQVWCYKPILSTQKISSGLS*RTKSTS Trigger: GCTGGTAGACTTGGTCCTCAAGGAAAGCCCACTAGA...GATCTTCTGAGTGCTGAGTATAGGCTTATAGCACCAGACCTGGTTCCCTGTAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS TCA 90 bp | TTGCAACAGCACAAACTCACCAAACCATTCCTGTTATCCACCCACTaGACGAGGAAGGACTCTGTGGAATCTAGTGGGCTTTCCTTGAGG | + |
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Preference number: 5 (lower is better) Translates to: LQQHKLTKPFLLSTH*TRKDSVESSGLSLR Trigger: CCTCAAGGAAAGCCCACTAGATTCCACAGAGTCCTTCCTCGTTCAGTGGGTGGATAACAGGAATGGTTTGGTGAGTTTGTGCTGTTGCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS TCA 90 bp | TTAGTAACAGAACTCGAAGGGGCTCTGGGCTCAAATGGGTCAGTTTaGCCCATTTCAAATTCAGGTGTTTTAGCTGACTTGTGCACTGGA | + |
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Preference number: 5 (lower is better) Translates to: LVTELEGALGSNGSV*PISNSGVLADLCTG Trigger: TCCAGTGCACAAGTCAGCTAAAACACCTGAATTTGAAATGGGTCAAACTGACCCATTTGAGCCCAGAGCCCCTTCGAGTTCTGTTACTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR CAA 90 bp | CACCTGACGTTTAACCACAGCCTCATTTGTAGACACAGTTCATTGACCACAAAATTTCTGCAGGCCTTTTaGAACAGTGATGGGAAGAAA | + |
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Preference number: 5 (lower is better) Translates to: HLTFNHSLICRHSSLTTKFLQAF*NSDGKK Trigger: TTTCTTCCCATCACTGTTCAAAAAGGCCTGCAGAAA...TTTTGTGGTCAATGAACTGTGTCTACAAATGAGGCTGTGGTTAAACGTCAGGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR CAA 90 bp | CACCTGACGTTTAACCACAGCCTCATTTGTAGACACAGTTCATTGACCACAAAACCATGGAAATTAAACTaGGTGAGCTGTGTACAGCAT | + |
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Preference number: 5 (lower is better) Translates to: HLTFNHSLICRHSSLTTKPWKLN*VSCVQH Trigger: ATGCTGTACACAGCTCACCAAGTTTAATTTCCATGG...TTTTGTGGTCAATGAACTGTGTCTACAAATGAGGCTGTGGTTAAACGTCAGGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS TCA 90 bp | CTCAAATGGGTCAGTTTGACCCATTTCAAATTCAGGTGTTTTAGCTaGCTTGTGCACTGGAACTCAGATATATGGAACCAGTCTGATTTT | + |
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Preference number: 5 (lower is better) Translates to: LKWVSLTHFKFRCFS*LVHWNSDIWNQSDF Trigger: AAAATCAGACTGGTTCCATATATCTGAGTTCCAGTGCACAAGTCAGCTAAAACACCTGAATTTGAAATGGGTCAAACTGACCCATTTGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS-3UTR CAA 90 bp | ACTCAGAAGATCAAAGTAGAAGAACCAGCAAATAGCATAAAACAAGTTTGTTCCAAACAAGACTTGTTCTaGCTCCCCAGTAGTCCGATC | + |
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Preference number: 5 (lower is better) Translates to: TQKIKVEEPANSIKQVCSKQDLF*LPSSPI Trigger: GATCGGACTACTGGGGAGCAAGAACAAGTCTTGTTT...GGAACAAACTTGTTTTATGCTATTTGCTGGTTCTTCTACTTTGATCTTCTGAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS TCA 72 bp | GGGTCATCGAGAAGGTCTGCCAGAGGTGAGAGAGGATaGGGCAGCGCAGGTTCCTCATGCGACCCAAGTAAG | + |
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Preference number: 6 (lower is better) Translates to: GSSRRSARGERG*GSAGSSCDPSK Trigger: CTTACTTGGGTCGCATGAGGAACCTGCGCTGCCTCATCCTCTCTCACCTCTGGCAGACCTTCTCGATGACCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS GCA 72 bp | CTGTTCCCGAATGGCCCACCACTGCTGGATTCTCACTaGAGCCAGCAGTCCCAAACACAGGCAACCTGTTCC | + |
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Preference number: 6 (lower is better) Translates to: LFPNGPPLLDSH*SQQSQTQATCS Trigger: GGAACAGGTTGCCTGTGTTTGGGACTGCTGGCTGCAGTGAGAATCCAGCAGTGGTGGGCCATTCGGGAACAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS CCA 72 bp | GCTTTCCTTGAGGACCAAGTCTACCAGCACCTTCACTaGCTGTTTCACCTCTGTTCCCGAATGGCCCACCAC | + |
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Preference number: 6 (lower is better) Translates to: AFLEDQVYQHLH*LFHLCSRMAHH Trigger: GTGGTGGGCCATTCGGGAACAGAGGTGAAACAGCCAGTGAAGGTGCTGGTAGACTTGGTCCTCAAGGAAAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS CCA 72 bp | AGCACTTGCAGCTTGCACCTGCTGTGGGGAACTTTCTaGGAAAGCAAGGCATCAAGCCCATACAGGATAATC | + |
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Preference number: 6 (lower is better) Translates to: STCSLHLLWGTF*ESKASSPYRII Trigger: GATTATCCTGTATGGGCTTGATGCCTTGCTTTCCCAGAAAGTTCCCCACAGCAGGTGCAAGCTGCAAGTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS TCA 72 bp | CACAAACTCACCAAACCATTCCTGTTATCCACCCACTaGACGAGGAAGGACTCTGTGGAATCTAGTGGGCTT | + |
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Preference number: 6 (lower is better) Translates to: HKLTKPFLLSTH*TRKDSVESSGL Trigger: AAGCCCACTAGATTCCACAGAGTCCTTCCTCGTTCAGTGGGTGGATAACAGGAATGGTTTGGTGAGTTTGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS TCA 72 bp | GAACTCGAAGGGGCTCTGGGCTCAAATGGGTCAGTTTaGCCCATTTCAAATTCAGGTGTTTTAGCTGACTTG | + |
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Preference number: 6 (lower is better) Translates to: ELEGALGSNGSV*PISNSGVLADL Trigger: CAAGTCAGCTAAAACACCTGAATTTGAAATGGGTCAAACTGACCCATTTGAGCCCAGAGCCCCTTCGAGTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS GCA 72 bp | CTTGGGATAAAGCGTATCTTTGACTGTTGGGATTTCTaGTTGACAACGTTATATGCCAGCTCCCTCAGGATA | + |
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Preference number: 6 (lower is better) Translates to: LGIKRIFDCWDF*LTTLYASSLRI Trigger: TATCCTGAGGGAGCTGGCATATAACGTTGTCAAGCAGAAATCCCAACAGTCAAAGATACGCTTTATCCCAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS CCA 72 bp | TTTAGTAACAGAACTCGAAGGGGCTCTGGGCTCAAATaGGTCAGTTTGACCCATTTCAAATTCAGGTGTTTT | + |
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Preference number: 6 (lower is better) Translates to: FSNRTRRGSGLK*VSLTHFKFRCF Trigger: AAAACACCTGAATTTGAAATGGGTCAAACTGACCCATTTGAGCCCAGAGCCCCTTCGAGTTCTGTTACTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS TCA 72 bp | GTCAGTTTGACCCATTTCAAATTCAGGTGTTTTAGCTaGCTTGTGCACTGGAACTCAGATATATGGAACCAG | + |
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Preference number: 6 (lower is better) Translates to: VSLTHFKFRCFS*LVHWNSDIWNQ Trigger: CTGGTTCCATATATCTGAGTTCCAGTGCACAAGTCAGCTAAAACACCTGAATTTGAAATGGGTCAAACTGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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| CDS CAA 72 bp | TGCACTGGAACTCAGATATATGGAACCAGTCTGATTTaGAGAGATTACAATCAATCACAGACAGGGTCTCTA | + |
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Preference number: 6 (lower is better) Translates to: CTGTQIYGTSLI*RDYNQSQTGSL Trigger: TAGAGACCCTGTCTGTGATTGATTGTAATCTCTCAAAATCAGACTGGTTCCATATATCTGAGTTCCAGTGCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037419.4 |
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