Pregenerated sensors for PRAF2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031149Ensembl transcript IDs: ENSMUST00000033489.8
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GATTTGGCCAGGTCTTATAACCTATATTCCAAGCTGTGTGGGGTCTaGAAAATCTTTAGAGCTCAAGATTTGAGAATGTCCTGCCTTAGG | + |
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Preference number: 1 (lower is better) Translates to: DLARSYNLYSKLCGV*KIFRAQDLRMSCLR Trigger: CCTAAGGCAGGACATTCTCAAATCTTGAGCTCTAAAGATTTTTCAGACCCCACACAGCTTGGAATATAGGTTATAAGACCTGGCCAAATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| 3UTR CAA 90 bp | TGTGTCCCTTTCCCAGTTGGGGCTATCCCTAGCCAGCCCCACATGTaGGTCCTTGATACTGAGAACACTGTGAGGGAGGAAGAGACCCTC | + |
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Preference number: 2 (lower is better) Translates to: CVPFPVGAIPSQPHM*VLDTENTVREEETL Trigger: GAGGGTCTCTTCCTCCCTCACAGTGTTCTCAGTATCAAGGACCAACATGTGGGGCTGGCTAGGGATAGCCCCAACTGGGAAAGGGACACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| 3UTR-3UTR CCA 90 bp | GGTCGTCTGGGGTTAAGGGCTCAGTGTGGACTCATTAGGCTCAAGATTTGGCCAGACCGAGGAAGACTTTaGTCCCTAGGTAACAGGGGC | + |
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Preference number: 2 (lower is better) Translates to: GRLGLRAQCGLIRLKIWPDRGRL*SLGNRG Trigger: GCCCCTGTTACCTAGGGACCAAAGTCTTCCTCGGTC...TGGCCAAATCTTGAGCCTAATGAGTCCACACTGAGCCCTTAACCCCAGACGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| 3UTR-3UTR TCA 90 bp | CTATTATATGTGTCCCTTTCCCAGTTGGGGCTATCCCTAGCCAGCCCCACATGTAAGACTGGAAGTAGGTaGCTGAGTCTCAAATTCAGG | + |
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Preference number: 2 (lower is better) Translates to: LLYVSLSQLGLSLASPTCKTGSR*LSLKFR Trigger: CCTGAATTTGAGACTCAGTCACCTACTTCCAGTCTT...ACATGTGGGGCTGGCTAGGGATAGCCCCAACTGGGAAAGGGACACATATAATAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| 3UTR-3UTR CCA 90 bp | ATTATATGTGTCCCTTTCCCAGTTGGGGCTATCCCTAGCCAGCCCCACATGTTGTGGCCACAGATGCTCTaGCTTAAAAGTCCAGTTTCA | + |
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Preference number: 2 (lower is better) Translates to: IICVPFPVGAIPSQPHMLWPQML*LKSPVS Trigger: TGAAACTGGACTTTTAAGCCAGAGCATCTGTGGCCA...CAACATGTGGGGCTGGCTAGGGATAGCCCCAACTGGGAAAGGGACACATATAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| 3UTR CAA 90 bp | GGCTTTATTGTTGTAGCAACACTATTATATGTGTCCCTTTCCCAGTaGGGGCTATCCCTAGCCAGCCCCACATGTTGGTCCTTGATACTG | + |
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Preference number: 2 (lower is better) Translates to: GFIVVATLLYVSLSQ*GLSLASPTCWSLIL Trigger: CAGTATCAAGGACCAACATGTGGGGCTGGCTAGGGATAGCCCCAACTGGGAAAGGGACACATATAATAGTGTTGCTACAACAATAAAGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| 3UTR-3UTR CCA 90 bp | CTTGAGATTCAAAGGCTTTATTGTTGTAGCAACACTATTATATGTGTCCCTTTCATTAGGCTCAAGATTTaGCCAGGTCTTATAACCTAT | + |
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Preference number: 2 (lower is better) Translates to: LEIQRLYCCSNTIICVPFIRLKI*PGLITY Trigger: ATAGGTTATAAGACCTGGCCAAATCTTGAGCCTAAT...GAAAGGGACACATATAATAGTGTTGCTACAACAATAAAGCCTTTGAATCTCAAG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| 3UTR-3UTR CAA 90 bp | GTCCTTGATACTGAGAACACTGTGAGGGAGGAAGAGACCCTCTTAACGGTTGGATGGCTAGGAAAAGGGTaGGTCTTGGGTATGGGGTGG | + |
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Preference number: 3 (lower is better) Translates to: VLDTENTVREEETLLTVGWLGKG*VLGMGW Trigger: CCACCCCATACCCAAGACCAACCCTTTTCCTAGCCA...TCCAACCGTTAAGAGGGTCTCTTCCTCCCTCACAGTGTTCTCAGTATCAAGGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| 3UTR-3UTR CAA 90 bp | CTATTATATGTGTCCCTTTCCCAGTTGGGGCTATCCCTAGCCAGCCCCACATGTGGTCCAGTTTTGAGATaGGCCACAGATGCTCTGGCT | + |
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Preference number: 3 (lower is better) Translates to: LLYVSLSQLGLSLASPTCGPVLR*ATDALA Trigger: AGCCAGAGCATCTGTGGCCAATCTCAAAACTGGACC...ACATGTGGGGCTGGCTAGGGATAGCCCCAACTGGGAAAGGGACACATATAATAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| 3UTR CCA 72 bp | GTGACTGAGTCTCAAATTCAGGACCGAGGAAGACTTTaGTCCCTAGGTAACAGGGGCTGGAGGCTAAGAGAT | + |
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Preference number: 3 (lower is better) Translates to: VTESQIQDRGRL*SLGNRGWRLRD Trigger: ATCTCTTAGCCTCCAGCCCCTGTTACCTAGGGACCAAAGTCTTCCTCGGTCCTGAATTTGAGACTCAGTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| 3UTR CCA 72 bp | ACTAGTGAGTCCCACATTTGGGTCAGAGGAGTATCTTaGGGTCCAGTTTTGAGATTGGCCACAGATGCTCTG | + |
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Preference number: 3 (lower is better) Translates to: TSESHIWVRGVS*GPVLRLATDAL Trigger: CAGAGCATCTGTGGCCAATCTCAAAACTGGACCCCAAGATACTCCTCTGACCCAAATGTGGGACTCACTAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| 3UTR CCA 72 bp | AGCTTTGACGTATGGAAGACTAGTGAGTCCCACATTTaGGTCAGAGGAGTATCTTGGGGTCCAGTTTTGAGA | + |
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Preference number: 3 (lower is better) Translates to: SFDVWKTSESHI*VRGVSWGPVLR Trigger: TCTCAAAACTGGACCCCAAGATACTCCTCTGACCCAAATGTGGGACTCACTAGTCTTCCATACGTCAAAGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| 3UTR-3UTR CAA 90 bp | TGGCCAGGTCTTATAACCTATATTCCAAGCTGTGTGGGGTCTGAAAAATCTTTATCTTGGGGTCCAGTTTaGAGATTGGCCACAGATGCT | + |
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Preference number: 3 (lower is better) Translates to: WPGLITYIPSCVGSEKSLSWGPV*RLATDA Trigger: AGCATCTGTGGCCAATCTCAAAACTGGACCCCAAGA...TAAAGATTTTTCAGACCCCACACAGCTTGGAATATAGGTTATAAGACCTGGCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| 3UTR TCA 72 bp | CTTAAAAGTCCAGTTTCAAGACTGGAAGTAGGTGACTaGGTCTCAAATTCAGGACCGAGGAAGACTTTGGTC | + |
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Preference number: 3 (lower is better) Translates to: LKSPVSRLEVGD*VSNSGPRKTLV Trigger: GACCAAAGTCTTCCTCGGTCCTGAATTTGAGACTCAGTCACCTACTTCCAGTCTTGAAACTGGACTTTTAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| 3UTR TCA 72 bp | AGGTCTTATAACCTATATTCCAAGCTGTGTGGGGTCTaGAAAATCTTTAGAGCTCAAGATTTGAGAATGTCC | + |
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Preference number: 3 (lower is better) Translates to: RSYNLYSKLCGV*KIFRAQDLRMS Trigger: GGACATTCTCAAATCTTGAGCTCTAAAGATTTTTCAGACCCCACACAGCTTGGAATATAGGTTATAAGACCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS-3UTR GCA 90 bp | GTCCCTTTCCCAGTTGGGGCTATCCCTAGCCAGCCCCACATGTTGGTCCTTGATAGGCAGCAGGGTGGCTaGGACGGCAGCGGCGCACAG | + |
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Preference number: 4 (lower is better) Translates to: VPFPVGAIPSQPHMLVLDRQQGG*DGSGAQ Trigger: CTGTGCGCCGCTGCCGTCGCAGCCACCCTGCTGCCT...ATCAAGGACCAACATGTGGGGCTGGCTAGGGATAGCCCCAACTGGGAAAGGGAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS-3UTR GCA 90 bp | TATGTGTCCCTTTCCCAGTTGGGGCTATCCCTAGCCAGCCCCACATGTTGGTCCGCAGCGGCGCACAGCTaGACGGGTTTCAGCAGCCCA | + |
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Preference number: 4 (lower is better) Translates to: YVSLSQLGLSLASPTCWSAAAHS*TGFSSP Trigger: TGGGCTGCTGAAACCCGTGCAGCTGTGCGCCGCTGC...GGACCAACATGTGGGGCTGGCTAGGGATAGCCCCAACTGGGAAAGGGACACATA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS-3UTR GCA 90 bp | TATGTGTCCCTTTCCCAGTTGGGGCTATCCCTAGCCAGCCCCACATGTTGGTCCCACCACCACTACCAGTaGACTCAGGAGGGTGTGCAG | + |
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Preference number: 4 (lower is better) Translates to: YVSLSQLGLSLASPTCWSHHHYQ*TQEGVQ Trigger: CTGCACACCCTCCTGAGTGCACTGGTAGTGGTGGTG...GGACCAACATGTGGGGCTGGCTAGGGATAGCCCCAACTGGGAAAGGGACACATA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS-3UTR TCA 90 bp | ATATGTGTCCCTTTCCCAGTTGGGGCTATCCCTAGCCAGCCCCACATGTTGGTCTTGTTGATGACGCGGTaGCACCATCGTTGTGGATCG | + |
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Preference number: 4 (lower is better) Translates to: ICVPFPVGAIPSQPHMLVLLMTR*HHRCGS Trigger: CGATCCACAACGATGGTGTCACCGCGTCATCAACAA...GACCAACATGTGGGGCTGGCTAGGGATAGCCCCAACTGGGAAAGGGACACATAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| 3UTR CAA 72 bp | TTCCCAGTTGGGGCTATCCCTAGCCAGCCCCACATGTaGGTCCTTGATACTGAGAACACTGTGAGGGAGGAA | + |
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Preference number: 4 (lower is better) Translates to: FPVGAIPSQPHM*VLDTENTVREE Trigger: TTCCTCCCTCACAGTGTTCTCAGTATCAAGGACCAACATGTGGGGCTGGCTAGGGATAGCCCCAACTGGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS-3UTR GCA 90 bp | GGTCGTCTGGGGTTAAGGGCTCAGTGTGGACTCATTAGGCTCAAGATTTGGCCATCCGCTTTAGACCGATaGTCTCGATCTTGTTCTCAA | + |
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Preference number: 4 (lower is better) Translates to: GRLGLRAQCGLIRLKIWPSALDR*SRSCSQ Trigger: TTGAGAACAAGATCGAGAGCATCGGTCTAAAGCGGA...TGGCCAAATCTTGAGCCTAATGAGTCCACACTGAGCCCTTAACCCCAGACGACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS-3UTR GCA 90 bp | CTATTATATGTGTCCCTTTCCCAGTTGGGGCTATCCCTAGCCAGCCCCACATGTAGACGCAGTGAAGCATaGAGCAGGATCAAAAACACA | + |
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Preference number: 4 (lower is better) Translates to: LLYVSLSQLGLSLASPTCRRSEA*SRIKNT Trigger: TGTGTTTTTGATCCTGCTGCATGCTTCACTGCGTCT...ACATGTGGGGCTGGCTAGGGATAGCCCCAACTGGGAAAGGGACACATATAATAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS-3UTR CCA 90 bp | GAGTCTCAAATTCAGGACCGAGGAAGACTTTGGTCCCTAGGTAACAGGGGCTGGAGCAGAGAAGGTAATTaGTTTGGTAGTAGAGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: ESQIQDRGRLWSLGNRGWSREGN*FGSRGG Trigger: ACCTCCTCTACTACCAAACCAATTACCTTCTCTGCT...CCAGCCCCTGTTACCTAGGGACCAAAGTCTTCCTCGGTCCTGAATTTGAGACTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS-3UTR GCA 90 bp | CTTGAGATTCAAAGGCTTTATTGTTGTAGCAACACTATTATATGTGTCCCTTTCGCTAATGGCAAGCACTaGAGCCAGGCAGGCAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: LEIQRLYCCSNTIICVPFANGKH*SQAGSR Trigger: CCTGCTGCCTGCCTGGCTGCAGTGCTTGCCATTAGC...GAAAGGGACACATATAATAGTGTTGCTACAACAATAAAGCCTTTGAATCTCAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS CCA 90 bp | GAGGAGGTTGTTGATGACGCGGTGACACCATCGTTGTGGATCGCCTaGATCAGGAGCCGCCAGGCGCGCAGACCCCAGGACAAAGTCGTC | + |
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Preference number: 5 (lower is better) Translates to: EEVVDDAVTPSLWIA*IRSRQARRPQDKVV Trigger: GACGACTTTGTCCTGGGGTCTGCGCGCCTGGCGGCTCCTGATCCAGGCGATCCACAACGATGGTGTCACCGCGTCATCAACAACCTCCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS CCA 90 bp | TTGGTAGTAGAGGAGGTTGTTGATGACGCGGTGACACCATCGTTGTaGATCGCCTGGATCAGGAGCCGCCAGGCGCGCAGACCCCAGGAC | + |
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Preference number: 5 (lower is better) Translates to: LVVEEVVDDAVTPSL*IAWIRSRQARRPQD Trigger: GTCCTGGGGTCTGCGCGCCTGGCGGCTCCTGATCCAGGCGATCCACAACGATGGTGTCACCGCGTCATCAACAACCTCCTCTACTACCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS TCA 90 bp | TCAGGAGGGTGTGCAGCGGACGAATGTACCCGGCCAGCGCAAGACTaGTGCCAAAGCAGAGAAGGTAATTGGTTTGGTAGTAGAGGAGGT | + |
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Preference number: 5 (lower is better) Translates to: SGGCAADECTRPAQD*CQSREGNWFGSRGG Trigger: ACCTCCTCTACTACCAAACCAATTACCTTCTCTGCTTTGGCATCAGTCTTGCGCTGGCCGGGTACATTCGTCCGCTGCACACCCTCCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS-3UTR CAA 90 bp | GGTCAGAGGAGTATCTTGGGGTCCAGTTTTGAGATTGGCCACAGATGCTCTGGCGAGAAGGTAATTGGTTaGGTAGTAGAGGAGGTTGTT | + |
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Preference number: 5 (lower is better) Translates to: GQRSILGSSFEIGHRCSGEKVIG*VVEEVV Trigger: AACAACCTCCTCTACTACCAAACCAATTACCTTCTC...GCCAGAGCATCTGTGGCCAATCTCAAAACTGGACCCCAAGATACTCCTCTGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS TCA 90 bp | CTCGATCTTGTTCTCAATCTTGTTTTTAAGGTTTCTCAGACGCAGTaGAGCATGCAGCAGGATCAAAAACACAGGCGCTGTGATGCTGAG | + |
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Preference number: 5 (lower is better) Translates to: LDLVLNLVFKVSQTQ*SMQQDQKHRRCDAE Trigger: CTCAGCATCACAGCGCCTGTGTTTTTGATCCTGCTGCATGCTTCACTGCGTCTGAGAAACCTTAAAAACAAGATTGAGAACAAGATCGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS GCA 90 bp | TTGTTCTCAATCTTGTTTTTAAGGTTTCTCAGACGCAGTGAAGCATaGAGCAGGATCAAAAACACAGGCGCTGTGATGCTGAGCAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: LFSILFLRFLRRSEA*SRIKNTGAVMLSRK Trigger: CTTCCTGCTCAGCATCACAGCGCCTGTGTTTTTGATCCTGCTGCATGCTTCACTGCGTCTGAGAAACCTTAAAAACAAGATTGAGAACAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS-3UTR CAA 90 bp | CTTGAGATTCAAAGGCTTTATTGTTGTAGCAACACTATTATATGTGTCCCTTTCCCGATGCTCTCGATCTaGTTCTCAATCTTGTTTTTA | + |
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Preference number: 5 (lower is better) Translates to: LEIQRLYCCSNTIICVPFPMLSI*FSILFL Trigger: TAAAAACAAGATTGAGAACAAGATCGAGAGCATCGG...GAAAGGGACACATATAATAGTGTTGCTACAACAATAAAGCCTTTGAATCTCAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS CCA 72 bp | GAGGAGGTTGTTGATGACGCGGTGACACCATCGTTGTaGATCGCCTGGATCAGGAGCCGCCAGGCGCGCAGA | + |
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Preference number: 6 (lower is better) Translates to: EEVVDDAVTPSL*IAWIRSRQARR Trigger: TCTGCGCGCCTGGCGGCTCCTGATCCAGGCGATCCACAACGATGGTGTCACCGCGTCATCAACAACCTCCTC 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS CAA 72 bp | GTAGAGGAGGTTGTTGATGACGCGGTGACACCATCGTaGTGGATCGCCTGGATCAGGAGCCGCCAGGCGCGC | + |
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Preference number: 6 (lower is better) Translates to: VEEVVDDAVTPS*WIAWIRSRQAR Trigger: GCGCGCCTGGCGGCTCCTGATCCAGGCGATCCACAACGATGGTGTCACCGCGTCATCAACAACCTCCTCTAC 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS CAA 90 bp | GGTTTGGTAGTAGAGGAGGTTGTTGATGACGCGGTGACACCATCGTaGTGGATCGCCTGGATCAGGAGCCGCCAGGCGCGCAGACCCCAG | + |
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Preference number: 6 (lower is better) Translates to: GLVVEEVVDDAVTPS*WIAWIRSRQARRPQ Trigger: CTGGGGTCTGCGCGCCTGGCGGCTCCTGATCCAGGCGATCCACAACGATGGTGTCACCGCGTCATCAACAACCTCCTCTACTACCAAACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS CAA 72 bp | CCTGCTCCTGTCCCAGTGCCTCTAGAAGCAATCCCATaGGTGTCCGCTTTAGACCGATGCTCTCGATCTTGT | + |
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Preference number: 6 (lower is better) Translates to: PAPVPVPLEAIP*VSALDRCSRSC Trigger: ACAAGATCGAGAGCATCGGTCTAAAGCGGACACCAATGGGATTGCTTCTAGAGGCACTGGGACAGGAGCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS CAA 90 bp | CCCGGCCAGCGCAAGACTGATGCCAAAGCAGAGAAGGTAATTGGTTaGGTAGTAGAGGAGGTTGTTGATGACGCGGTGACACCATCGTTG | + |
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Preference number: 6 (lower is better) Translates to: PGQRKTDAKAEKVIG*VVEEVVDDAVTPSL Trigger: CAACGATGGTGTCACCGCGTCATCAACAACCTCCTCTACTACCAAACCAATTACCTTCTCTGCTTTGGCATCAGTCTTGCGCTGGCCGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS TCA 72 bp | TGTGCAGCGGACGAATGTACCCGGCCAGCGCAAGACTaGTGCCAAAGCAGAGAAGGTAATTGGTTTGGTAGT | + |
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Preference number: 6 (lower is better) Translates to: CAADECTRPAQD*CQSREGNWFGS Trigger: ACTACCAAACCAATTACCTTCTCTGCTTTGGCATCAGTCTTGCGCTGGCCGGGTACATTCGTCCGCTGCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS CAA 72 bp | CGCAAGACTGATGCCAAAGCAGAGAAGGTAATTGGTTaGGTAGTAGAGGAGGTTGTTGATGACGCGGTGACA | + |
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Preference number: 6 (lower is better) Translates to: RKTDAKAEKVIG*VVEEVVDDAVT Trigger: TGTCACCGCGTCATCAACAACCTCCTCTACTACCAAACCAATTACCTTCTCTGCTTTGGCATCAGTCTTGCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS TCA 72 bp | GTTCTCAATCTTGTTTTTAAGGTTTCTCAGACGCAGTaGAGCATGCAGCAGGATCAAAAACACAGGCGCTGT | + |
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Preference number: 6 (lower is better) Translates to: VLNLVFKVSQTQ*SMQQDQKHRRC Trigger: ACAGCGCCTGTGTTTTTGATCCTGCTGCATGCTTCACTGCGTCTGAGAAACCTTAAAAACAAGATTGAGAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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| CDS CAA 72 bp | CGCTTTAGACCGATGCTCTCGATCTTGTTCTCAATCTaGTTTTTAAGGTTTCTCAGACGCAGTGAAGCATGC | + |
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Preference number: 6 (lower is better) Translates to: RFRPMLSILFSI*FLRFLRRSEAC Trigger: GCATGCTTCACTGCGTCTGAGAAACCTTAAAAACAAGATTGAGAACAAGATCGAGAGCATCGGTCTAAAGCG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033489.8 |
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