Pregenerated sensors for PPY (Mus musculus)
Ensembl gene IDs: ENSMUSG00000017316Ensembl transcript IDs: ENSMUST00000017460.6, ENSMUST00000170554.9
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGCAGAGGAAAGAGCTGGACCTGTACTCTCCTACAGCCACGGGCTaGAGACAAGAGAGGCTGCAAGTCCATTGGGCAGAGCTCCCTGCC | + |
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Preference number: 1 (lower is better) Translates to: LQRKELDLYSPTATG*RQERLQVHWAELPA Trigger: GGCAGGGAGCTCTGCCCAATGGACTTGCAGCCTCTCTTGTCTTCAGCCCGTGGCTGTAGGAGAGTACAGGTCCAGCTCTTTCCTCTGCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017460.6 |
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| 3UTR CCA 90 bp | AGTTTGCAAGGGAGCAGGTTGTTGCAAGACTGCAGAGGAAAGAGCTaGACCTGTACTCTCCTACAGCCACGGGCTGAAGACAAGAGAGGC | + |
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Preference number: 1 (lower is better) Translates to: SLQGSRLLQDCRGKS*TCTLLQPRAEDKRG Trigger: GCCTCTCTTGTCTTCAGCCCGTGGCTGTAGGAGAGTACAGGTCCAGCTCTTTCCTCTGCAGTCTTGCAACAACCTGCTCCCTTGCAAACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017460.6 ENSMUST00000170554.9 |
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| 3UTR GCA 90 bp | TATGATTTTAATTTGCTTTATTTAGTTTGCAAGGGAGCAGGTTGTTaGAAGACTGCAGAGGAAAGAGCTGGACCTGTACTCTCCTACAGC | + |
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Preference number: 1 (lower is better) Translates to: YDFNLLYLVCKGAGC*KTAEERAGPVLSYS Trigger: GCTGTAGGAGAGTACAGGTCCAGCTCTTTCCTCTGCAGTCTTGCAACAACCTGCTCCCTTGCAAACTAAATAAAGCAAATTAAAATCATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017460.6 ENSMUST00000170554.9 |
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| 3UTR TCA 72 bp | AAAGAGCTGGACCTGTACTCTCCTACAGCCACGGGCTaGAGACAAGAGAGGCTGCAAGTCCATTGGGCAGAG | + |
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Preference number: 3 (lower is better) Translates to: KELDLYSPTATG*RQERLQVHWAE Trigger: CTCTGCCCAATGGACTTGCAGCCTCTCTTGTCTTCAGCCCGTGGCTGTAGGAGAGTACAGGTCCAGCTCTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017460.6 ENSMUST00000170554.9 |
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| 3UTR GCA 72 bp | TTATTTAGTTTGCAAGGGAGCAGGTTGTTGCAAGACTaGAGAGGAAAGAGCTGGACCTGTACTCTCCTACAG | + |
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Preference number: 3 (lower is better) Translates to: LFSLQGSRLLQD*RGKSWTCTLLQ Trigger: CTGTAGGAGAGTACAGGTCCAGCTCTTTCCTCTGCAGTCTTGCAACAACCTGCTCCCTTGCAAACTAAATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017460.6 ENSMUST00000170554.9 |
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| CDS-3UTR GCA 90 bp | GCTGGACCTGTACTCTCCTACAGCCACGGGCTGAAGACAAGAGAGGCTGCAAGTGTCCCCTGCAGGGGCTaGAGCAGCAGAGCCACCCAA | + |
|
Preference number: 4 (lower is better) Translates to: AGPVLSYSHGLKTREAASVPCRG*SSRATQ Trigger: TTGGGTGGCTCTGCTGCTGCAGCCCCTGCAGGGGAC...ACTTGCAGCCTCTCTTGTCTTCAGCCCGTGGCTGTAGGAGAGTACAGGTCCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017460.6 ENSMUST00000170554.9 |
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| CDS-3UTR GCA 90 bp | TCCTACAGCCACGGGCTGAAGACAAGAGAGGCTGCAAGTCCATTGGGCAGAGCTGTCCCCTGCAGGGGCTaGAGCAGCAGAGCCACCCAA | + |
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Preference number: 4 (lower is better) Translates to: SYSHGLKTREAASPLGRAVPCRG*SSRATQ Trigger: TTGGGTGGCTCTGCTGCTGCAGCCCCTGCAGGGGAC...AGCTCTGCCCAATGGACTTGCAGCCTCTCTTGTCTTCAGCCCGTGGCTGTAGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017460.6 ENSMUST00000170554.9 |
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| CDS-3UTR GCA 90 bp | TACAGCCACGGGCTGAAGACAAGAGAGGCTGCAAGTCCATTGGGCAGAGCTCCCGTGCAGGGGGAGAGCTaGACTCCAGGAAGTCCACCT | + |
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Preference number: 4 (lower is better) Translates to: YSHGLKTREAASPLGRAPVQGES*TPGSPP Trigger: AGGTGGACTTCCTGGAGTGCAGCTCTCCCCCTGCAC...GGGAGCTCTGCCCAATGGACTTGCAGCCTCTCTTGTCTTCAGCCCGTGGCTGTA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000017460.6 ENSMUST00000170554.9 |
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| CDS-3UTR GCA 90 bp | ACTGCAGAGGAAAGAGCTGGACCTGTACTCTCCTACAGCCACGGGCTGAAGACAGTGCAGGGGGAGAGCTaGACTCCAGGAAGTCCACCT | + |
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Preference number: 4 (lower is better) Translates to: TAEERAGPVLSYSHGLKTVQGES*TPGSPP Trigger: AGGTGGACTTCCTGGAGTGCAGCTCTCCCCCTGCAC...TGTCTTCAGCCCGTGGCTGTAGGAGAGTACAGGTCCAGCTCTTTCCTCTGCAGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000017460.6 ENSMUST00000170554.9 |
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| CDS-3UTR TCA 90 bp | TGTACTCTCCTACAGCCACGGGCTGAAGACAAGAGAGGCTGCAAGTCCATTGGGGCCTGGTCAGTGTGTTaGTGTATCTGCGGAGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: CTLLQPRAEDKRGCKSIGAWSVC*CICGAE Trigger: CTCAGCTCCGCAGATACATCAACACACTGACCAGGC...CCCAATGGACTTGCAGCCTCTCTTGTCTTCAGCCCGTGGCTGTAGGAGAGTACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017460.6 ENSMUST00000170554.9 |
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| CDS-3UTR TCA 90 bp | CCTGTACTCTCCTACAGCCACGGGCTGAAGACAAGAGAGGCTGCAAGTCCATTGGCCTGGTCAGTGTGTTaGTGTATCTGCGGAGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: PVLSYSHGLKTREAASPLAWSVC*CICGAE Trigger: CTCAGCTCCGCAGATACATCAACACACTGACCAGGC...CAATGGACTTGCAGCCTCTCTTGTCTTCAGCCCGTGGCTGTAGGAGAGTACAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017460.6 ENSMUST00000170554.9 |
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| CDS-3UTR CAA 90 bp | GAGGAAAGAGCTGGACCTGTACTCTCCTACAGCCACGGGCTGAAGACAAGAGAGGAGCTGAGTTTCATATaGTGCCATCTGCTCAGGTGT | + |
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Preference number: 5 (lower is better) Translates to: EERAGPVLSYSHGLKTREELSFI*CHLLRC Trigger: ACACCTGAGCAGATGGCACAATATGAAACTCAGCTC...CTCTCTTGTCTTCAGCCCGTGGCTGTAGGAGAGTACAGGTCCAGCTCTTTCCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017460.6 ENSMUST00000170554.9 |
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| CDS-3UTR CAA 90 bp | TGTACTCTCCTACAGCCACGGGCTGAAGACAAGAGAGGCTGCAAGTCCATTGGGGAGCTGAGTTTCATATaGTGCCATCTGCTCAGGTGT | + |
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Preference number: 5 (lower is better) Translates to: CTLLQPRAEDKRGCKSIGELSFI*CHLLRC Trigger: ACACCTGAGCAGATGGCACAATATGAAACTCAGCTC...CCCAATGGACTTGCAGCCTCTCTTGTCTTCAGCCCGTGGCTGTAGGAGAGTACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017460.6 ENSMUST00000170554.9 |
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