RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PPP4R4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021209

Ensembl transcript IDs: ENSMUST00000021631.12, ENSMUST00000187155.7, ENSMUST00000189871.7, ENSMUST00000190151.2, ENSMUST00000190664.2

Found 243 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTGTGCATCTTTACTTCCACTACTCTTTGGATCGGCTGTGTTACCTaGCCCACGGGAAGTGCTGGGCATGACAGGGTTAGGAGAAAAGGA +
Preference number: 1 (lower is better)
Translates to: LCIFTSTTLWIGCVT*PTGSAGHDRVRRKG
Trigger: TCCTTTTCTCCTAACCCTGTCATGCCCAGCACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGTAAAGATGCACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
3UTR CCA 90 bp AAAGTTTTCCTGAATCTTTGTGGATTTTCATTGCTGAATCTAGACTaGGGCCGTCCAGGTGCTGATACCATCACAGAATCCAGGACCCAC +
Preference number: 1 (lower is better)
Translates to: KVFLNLCGFSLLNLD*GRPGADTITESRTH
Trigger: GTGGGTCCTGGATTCTGTGATGGTATCAGCACCTGGACGGCCCCAGTCTAGATTCAGCAATGAAAATCCACAAAGATTCAGGAAAACTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
3UTR GCA 90 bp AAGTGGTTACCAGAAGTCAATTTAGACAAGCAGGCTAAGTTAGACTaGCATGGGATGTCTAAATGCTACAACTTAGTAAACAAAAGCCAG +
Preference number: 1 (lower is better)
Translates to: KWLPEVNLDKQAKLD*HGMSKCYNLVNKSQ
Trigger: CTGGCTTTTGTTTACTAAGTTGTAGCATTTAGACATCCCATGGCAGTCTAACTTAGCCTGCTTGTCTAAATTGACTTCTGGTAACCACTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
3UTR-3UTR GCA 90 bp CTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGTGCTGGGCATGACAGGGTTAGGAAGCTGGAACACTaGTGGCATTTCGAGTTCGGA +
Preference number: 2 (lower is better)
Translates to: LWIGCVTWPTGSAGHDRVRKLEH*WHFEFG
Trigger: TCCGAACTCGAAATGCCAGCAGTGTTCCAGCTTCCT...AACCCTGTCATGCCCAGCACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
3UTR-3UTR GCA 90 bp CCACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGTGCTGGGCATGCACACTTGTCTAAGGTaGCATATTTTGCATGAAAAG +
Preference number: 2 (lower is better)
Translates to: PLLFGSAVLPGPREVLGMHTCLR*HILHEK
Trigger: CTTTTCATGCAAAATATGGCACCTTAGACAAGTGTG...CATGCCCAGCACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
3UTR-3UTR CCA 90 bp ATCTTTACTTCCACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGTAGGAGAAAAGGAAGCTaGAACACTGCTGGCATTTCG +
Preference number: 2 (lower is better)
Translates to: IFTSTTLWIGCVTWPTGSRRKGS*NTAGIS
Trigger: CGAAATGCCAGCAGTGTTCCAGCTTCCTTTTCTCCT...ACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGTAAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
3UTR CCA 72 bp TTTACTTCCACTACTCTTTGGATCGGCTGTGTTACCTaGCCCACGGGAAGTGCTGGGCATGACAGGGTTAGG +
Preference number: 3 (lower is better)
Translates to: FTSTTLWIGCVT*PTGSAGHDRVR
Trigger: CCTAACCCTGTCATGCCCAGCACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGTAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
3UTR-3UTR CAA 90 bp CATCTTTACTTCCACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGCTTTTACTAGCACACTaGTCTAAGGTGCCATATTTT +
Preference number: 3 (lower is better)
Translates to: HLYFHYSLDRLCYLAHGKLLLAH*SKVPYF
Trigger: AAAATATGGCACCTTAGACAAGTGTGCTAGTAAAAG...CTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGTAAAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
3UTR GCA 72 bp AAGCAGGCTAAGTTAGACTGCCATGGGATGTCTAAATaGTACAACTTAGTAAACAAAAGCCAGCCTCTCACA +
Preference number: 3 (lower is better)
Translates to: KQAKLDCHGMSK*YNLVNKSQPLT
Trigger: TGTGAGAGGCTGGCTTTTGTTTACTAAGTTGTAGCATTTAGACATCCCATGGCAGTCTAACTTAGCCTGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
3UTR-3UTR CAA 90 bp AAGGAAGCTGGAACACTGCTGGCATTTCGAGTTCGGAATGAGTCATCAGTTAGTGATTTCTTGATTTCTTaGCCCTTTGACCTTCAGAAT +
Preference number: 3 (lower is better)
Translates to: KEAGTLLAFRVRNESSVSDFLIS*PFDLQN
Trigger: ATTCTGAAGGTCAAAGGGCAAAGAAATCAAGAAATC...ACTAACTGATGACTCATTCCGAACTCGAAATGCCAGCAGTGTTCCAGCTTCCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
3UTR-3UTR CAA 90 bp AAGGAAGCTGGAACACTGCTGGCATTTCGAGTTCGGAATGAGTCATCAGTTAGTTGGCTTCGAGTCAATTaGGATTTCTTGATTTCTTTG +
Preference number: 3 (lower is better)
Translates to: KEAGTLLAFRVRNESSVSWLRVN*DFLISL
Trigger: CAAAGAAATCAAGAAATCCAAATTGACTCGAAGCCA...ACTAACTGATGACTCATTCCGAACTCGAAATGCCAGCAGTGTTCCAGCTTCCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
3UTR GCA 72 bp CCAGAAGTCAATTTAGACAAGCAGGCTAAGTTAGACTaGCATGGGATGTCTAAATGCTACAACTTAGTAAAC +
Preference number: 3 (lower is better)
Translates to: PEVNLDKQAKLD*HGMSKCYNLVN
Trigger: GTTTACTAAGTTGTAGCATTTAGACATCCCATGGCAGTCTAACTTAGCCTGCTTGTCTAAATTGACTTCTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR TCA 90 bp GTTACCTGGCCCACGGGAAGTGCTGGGCATGACAGGGTTAGGAGAAAAGGAAGCAGAGAAGAGGGAACCTaGGTTCTGGGAAGCAGAGGG +
Preference number: 4 (lower is better)
Translates to: VTWPTGSAGHDRVRRKGSREEGT*VLGSRG
Trigger: CCCTCTGCTTCCCAGAACTCAGGTTCCCTCTTCTCT...GCTTCCTTTTCTCCTAACCCTGTCATGCCCAGCACTTCCCGTGGGCCAGGTAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR GCA 90 bp ACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGTGCTGGGCATGACACACCTGTGTCCCTGTaGTCCAGGTGCAGGAGAATG +
Preference number: 4 (lower is better)
Translates to: TTLWIGCVTWPTGSAGHDTPVSL*SRCRRM
Trigger: CATTCTCCTGCACCTGGAGCACAGGGACACAGGTGT...GTCATGCCCAGCACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR GCA 90 bp GTTCGGAATGAGTCATCAGTTAGTGACAGCATGGCAGTCCTCACCAGCCCTGAGGAGGCTGCAGCTCGCTaGTCAGCAGCTGTGAGTGCT +
Preference number: 4 (lower is better)
Translates to: VRNESSVSDSMAVLTSPEEAAAR*SAAVSA
Trigger: AGCACTCACAGCTGCTGAGCAGCGAGCTGCAGCCTC...CTCAGGGCTGGTGAGGACTGCCATGCTGTCACTAACTGATGACTCATTCCGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
3UTR CAA 72 bp CCTTCCGGGGCTGTGCATCTTTACTTCCACTACTCTTaGGATCGGCTGTGTTACCTGGCCCACGGGAAGTGC +
Preference number: 4 (lower is better)
Translates to: PSGAVHLYFHYS*DRLCYLAHGKC
Trigger: GCACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGTAAAGATGCACAGCCCCGGAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR TCA 90 bp ACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTCCAGCCATGCATTGCTaGCACCTGTGTCCCTGTGCT +
Preference number: 4 (lower is better)
Translates to: TMFLPPFHTLTILAVCRCPAMHC*HLCPCA
Trigger: AGCACAGGGACACAGGTGTCAGCAATGCATGGCTGG...ACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR GCA 90 bp TGTCTCTTCAGTCCAGCAGGCAGTACACACCAAGTTGGAGCTCATTACACTGCAGAGGCTGCAGCTCGCTaGTCAGCAGCTGTGAGTGCT +
Preference number: 4 (lower is better)
Translates to: CLFSPAGSTHQVGAHYTAEAAAR*SAAVSA
Trigger: AGCACTCACAGCTGCTGAGCAGCGAGCTGCAGCCTC...TGCAGTGTAATGAGCTCCAACTTGGTGTGTACTGCCTGCTGGACTGAAGAGACA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR GCA 90 bp TCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCGAGGCTGCAGCTCGCTaGTCAGCAGCTGTGAGTGCT +
Preference number: 4 (lower is better)
Translates to: SHQLHDVPSSLPHFNNPGEAAAR*SAAVSA
Trigger: AGCACTCACAGCTGCTGAGCAGCGAGCTGCAGCCTC...GCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp GCTGTGTTACCTGGCCCACGGGAAGTGCTGGGCATGACAGGGTTAGGAGAAAAGGTCCAGGAACAGAAATaGGCAAGTTCTTGGACAGGC +
Preference number: 4 (lower is better)
Translates to: AVLPGPREVLGMTGLGEKVQEQK*ASSWTG
Trigger: GCCTGTCCAAGAACTTGCCCATTTCTGTTCCTGGAC...CTTTTCTCCTAACCCTGTCATGCCCAGCACTTCCCGTGGGCCAGGTAACACAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR TCA 90 bp TTTCGAGTTCGGAATGAGTCATCAGTTAGTGACAGCATGGCAGTCCTCACCAGCCCAGCCATGCATTGCTaGCACCTGTGTCCCTGTGCT +
Preference number: 4 (lower is better)
Translates to: FRVRNESSVSDSMAVLTSPAMHC*HLCPCA
Trigger: AGCACAGGGACACAGGTGTCAGCAATGCATGGCTGG...GCTGGTGAGGACTGCCATGCTGTCACTAACTGATGACTCATTCCGAACTCGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR GCA 90 bp GAGTCATCAGTTAGTGACAGCATGGCAGTCCTCACCAGCCCTGAGACGGAAGACTCCACGCTTGCGACATaGAGGACTTCTCTGACTTTG +
Preference number: 4 (lower is better)
Translates to: ESSVSDSMAVLTSPETEDSTLAT*RTSLTL
Trigger: CAAAGTCAGAGAAGTCCTGCATGTCGCAAGCGTGGA...GTCTTCCGTCTCAGGGCTGGTGAGGACTGCCATGCTGTCACTAACTGATGACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR GCA 90 bp CAGGCAGTACACACCAAGTTGGAGCTCATTACACTGCACTGGAGCACTCGGATTACACCTGTGTCCCTGTaGTCCAGGTGCAGGAGAATG +
Preference number: 4 (lower is better)
Translates to: QAVHTKLELITLHWSTRITPVSL*SRCRRM
Trigger: CATTCTCCTGCACCTGGAGCACAGGGACACAGGTGT...AATCCGAGTGCTCCAGTGCAGTGTAATGAGCTCCAACTTGGTGTGTACTGCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR GCA 90 bp CACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGCTCAGCAGCTGTGAGTaGTGGAATCAAGTCTGGCAC +
Preference number: 4 (lower is better)
Translates to: HDVPSSLPHFNNPGRLSLLSSCE*WNQVWH
Trigger: GTGCCAGACTTGATTCCAGCACTCACAGCTGCTGAG...CAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR GCA 90 bp TACTTCCACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGTGCTGGAGCTGCTGGAGGAGATaGATGTCTGCAGGAATCTTC +
Preference number: 4 (lower is better)
Translates to: YFHYSLDRLCYLAHGKCWSCWRR*MSAGIF
Trigger: GAAGATTCCTGCAGACATGCATCTCCTCCAGCAGCT...CCAGCACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CCA 90 bp GTGCATCTTTACTTCCACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACGGGGCGCAGACTTCACCTTaGGCAGCAGGTAGCAAAGTT +
Preference number: 4 (lower is better)
Translates to: VHLYFHYSLDRLCYLAHGAQTSP*AAGSKV
Trigger: AACTTTGCTACCTGCTGCCCAAGGTGAAGTCTGCGC...CCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGTAAAGATGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CCA 90 bp CTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCCAGTTAGTGACAGCATaGCAGTCCTCACCAGCCCTG +
Preference number: 4 (lower is better)
Translates to: LPPFHTLTILAVCRCSFSQLVTA*QSSPAL
Trigger: CAGGGCTGGTGAGGACTGCCATGCTGTCACTAACTG...GGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp ACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTCAGTTAGTGACAGCATaGCAGTCCTCACCAGCCCTG +
Preference number: 4 (lower is better)
Translates to: TMFLPPFHTLTILAVCRCQLVTA*QSSPAL
Trigger: CAGGGCTGGTGAGGACTGCCATGCTGTCACTAACTG...ACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR TCA 90 bp CACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCACCATCAGATTCCCAGCCATGCATTGCTaGCACCTGTGTCCCTGTGCT +
Preference number: 4 (lower is better)
Translates to: HTLTILAVCRCSFSTIRFPAMHC*HLCPCA
Trigger: AGCACAGGGACACAGGTGTCAGCAATGCATGGCTGG...GAATCTGATGGTGGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR TCA 90 bp AGCAGGCAGTACACACCAAGTTGGAGCTCATTACACTGCACTGGAGCACTCGGATCTGCCCCAATGCCCTaGGCTATGTTTTCTAACTGG +
Preference number: 4 (lower is better)
Translates to: SRQYTPSWSSLHCTGALGSAPMP*AMFSNW
Trigger: CCAGTTAGAAAACATAGCTCAGGGCATTGGGGCAGA...TCCGAGTGCTCCAGTGCAGTGTAATGAGCTCCAACTTGGTGTGTACTGCCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR TCA 90 bp CTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGTGCTGGGCATGACAGGGTTAGTGCTGATCTGGAGTaGAAATTCCATAGAGTCCAT +
Preference number: 4 (lower is better)
Translates to: LWIGCVTWPTGSAGHDRVSADLE*KFHRVH
Trigger: ATGGACTCTATGGAATTTTCACTCCAGATCAGCACT...AACCCTGTCATGCCCAGCACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR GCA 90 bp CACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTCCACGCTTGCGACATaGAGGACTTCTCTGACTTTG +
Preference number: 4 (lower is better)
Translates to: HDVPSSLPHFNNPGRLSLSTLAT*RTSLTL
Trigger: CAAAGTCAGAGAAGTCCTGCATGTCGCAAGCGTGGA...CAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR GCA 90 bp CTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCCTGCATCTCCACGCTTaGGACATGCAGGACTTCTCT +
Preference number: 4 (lower is better)
Translates to: LPPFHTLTILAVCRCSFSLHLHA*DMQDFS
Trigger: AGAGAAGTCCTGCATGTCGCAAGCGTGGAGATGCAG...GGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR GCA 90 bp TCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCACACCTGTGTCCCTGTaGTCCAGGTGCAGGAGAATG +
Preference number: 4 (lower is better)
Translates to: SHQLHDVPSSLPHFNNPGTPVSL*SRCRRM
Trigger: CATTCTCCTGCACCTGGAGCACAGGGACACAGGTGT...GCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR GCA 90 bp CAGGCAGTACACACCAAGTTGGAGCTCATTACACTGCACTGGAGCACTCGGATTCTCAGCAGCTGTGAGTaGTGGAATCAAGTCTGGCAC +
Preference number: 4 (lower is better)
Translates to: QAVHTKLELITLHWSTRILSSCE*WNQVWH
Trigger: GTGCCAGACTTGATTCCAGCACTCACAGCTGCTGAG...AATCCGAGTGCTCCAGTGCAGTGTAATGAGCTCCAACTTGGTGTGTACTGCCTG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR GCA 90 bp GCTGTGCATCTTTACTTCCACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACCTCAGCAGCTGTGAGTaGTGGAATCAAGTCTGGCAC +
Preference number: 4 (lower is better)
Translates to: AVHLYFHYSLDRLCYLAHLSSCE*WNQVWH
Trigger: GTGCCAGACTTGATTCCAGCACTCACAGCTGCTGAG...GTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGTAAAGATGCACAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR GCA 90 bp AGCAGGCAGTACACACCAAGTTGGAGCTCATTACACTGCACTGGAGCACTCGGAAGCCTTCCGGGGCTGTaGATCTTTACTTCCACTACT +
Preference number: 4 (lower is better)
Translates to: SRQYTPSWSSLHCTGALGSLPGL*IFTSTT
Trigger: AGTAGTGGAAGTAAAGATGCACAGCCCCGGAAGGCT...TCCGAGTGCTCCAGTGCAGTGTAATGAGCTCCAACTTGGTGTGTACTGCCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR GCA 90 bp CACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGAGCCTTCCGGGGCTGTaGATCTTTACTTCCACTACT +
Preference number: 4 (lower is better)
Translates to: HDVPSSLPHFNNPGRLSLSLPGL*IFTSTT
Trigger: AGTAGTGGAAGTAAAGATGCACAGCCCCGGAAGGCT...CAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR GCA 90 bp GCTGTGTTACCTGGCCCACGGGAAGTGCTGGGCATGACAGGGTTAGGAGAAAAGCTCTCAGGAATTTCATaGAGAGAGAAGAGGGAACCT +
Preference number: 4 (lower is better)
Translates to: AVLPGPREVLGMTGLGEKLSGIS*REKREP
Trigger: AGGTTCCCTCTTCTCTCTGCATGAAATTCCTGAGAG...CTTTTCTCCTAACCCTGTCATGCCCAGCACTTCCCGTGGGCCAGGTAACACAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CCA 90 bp TTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTCGCGACTGGACGGTTTaGGAAAGCTGTGCCTTGGAA +
Preference number: 4 (lower is better)
Translates to: FLPPFHTLTILAVCRCSFRDWTV*ESCALE
Trigger: TTCCAAGGCACAGCTTTCCCAAACCGTCCAGTCGCG...AAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp TCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGCGACTGGACGGTTTaGGAAAGCTGTGCCTTGGAA +
Preference number: 4 (lower is better)
Translates to: SHQLHDVPSSLPHFNNPGRDWTV*ESCALE
Trigger: TTCCAAGGCACAGCTTTCCCAAACCGTCCAGTCGCG...GCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp GCTGTGTTACCTGGCCCACGGGAAGTGCTGGGCATGACAGGGTTAGGAGAAAAGTCCTGCTCTACGATTTaGGATGGAATCTGGCTTTCA +
Preference number: 4 (lower is better)
Translates to: AVLPGPREVLGMTGLGEKSCSTI*DGIWLS
Trigger: TGAAAGCCAGATTCCATCCCAAATCGTAGAGCAGGA...CTTTTCTCCTAACCCTGTCATGCCCAGCACTTCCCGTGGGCCAGGTAACACAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR TCA 90 bp ACTTCCACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGTGCTGGGCCCTGTCAATATCACTaGGATCTTCATCAACAGTCA +
Preference number: 4 (lower is better)
Translates to: TSTTLWIGCVTWPTGSAGPCQYH*DLHQQS
Trigger: TGACTGTTGATGAAGATCTCAGTGATATTGACAGGG...CCCAGCACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR GCA 90 bp TTACCTGGCCCACGGGAAGTGCTGGGCATGACAGGGTTAGGAGAAAAGGAAGCTGGTTTGGGAAAGCTGTaGCTTGGAAACAAGTGGATT +
Preference number: 4 (lower is better)
Translates to: LPGPREVLGMTGLGEKEAGLGKL*LGNKWI
Trigger: AATCCACTTGTTTCCAAGGCACAGCTTTCCCAAACC...AGCTTCCTTTTCTCCTAACCCTGTCATGCCCAGCACTTCCCGTGGGCCAGGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CCA 90 bp CTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGTGCTGGGCATGACAGGGTTCTGTCGCATCAAAAATaGAAGGTTTGCAATCACACT +
Preference number: 4 (lower is better)
Translates to: LWIGCVTWPTGSAGHDRVLSHQK*KVCNHT
Trigger: AGTGTGATTGCAAACCTTCCATTTTTGATGCGACAG...AACCCTGTCATGCCCAGCACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CCA 90 bp GATTCTCCGCTGACTGCTTGTCTCCTTCACCAAGCAGTTGACTTAAGGATTGGACGCGACTGGACGGTTTaGGAAAGCTGTGCCTTGGAA +
Preference number: 4 (lower is better)
Translates to: DSPLTACLLHQAVDLRIGRDWTV*ESCALE
Trigger: TTCCAAGGCACAGCTTTCCCAAACCGTCCAGTCGCG...TCCAATCCTTAAGTCAACTGCTTGGTGAAGGAGACAAGCAGTCAGCGGAGAATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CCA 90 bp AGCAGGCAGTACACACCAAGTTGGAGCTCATTACACTGCACTGGAGCACTCGGACTAACTAAACGCGACTaGACGGTTTGGGAAAGCTGT +
Preference number: 4 (lower is better)
Translates to: SRQYTPSWSSLHCTGALGLTKRD*TVWESC
Trigger: ACAGCTTTCCCAAACCGTCCAGTCGCGTTTAGTTAG...TCCGAGTGCTCCAGTGCAGTGTAATGAGCTCCAACTTGGTGTGTACTGCCTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR CCA 90 bp CACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGCTAACTAAACGCGACTaGACGGTTTGGGAAAGCTGT +
Preference number: 4 (lower is better)
Translates to: HDVPSSLPHFNNPGRLSLLTKRD*TVWESC
Trigger: ACAGCTTTCCCAAACCGTCCAGTCGCGTTTAGTTAG...CAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp GAGTCATCAGTTAGTGACAGCATGGCAGTCCTCACCAGCCCTGAGACGGAAGACAATAGTGTGTCTGACTaGCACTTCAGGGTCATGACA +
Preference number: 4 (lower is better)
Translates to: ESSVSDSMAVLTSPETEDNSVSD*HFRVMT
Trigger: TGTCATGACCCTGAAGTGCCAGTCAGACACACTATT...GTCTTCCGTCTCAGGGCTGGTGAGGACTGCCATGCTGTCACTAACTGATGACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CCA 90 bp ACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGTGCTGGGCATGACTTTGCCACTGGGTCATaGGTTAGTTCAATAACAGGT +
Preference number: 4 (lower is better)
Translates to: TTLWIGCVTWPTGSAGHDFATGS*VSSITG
Trigger: ACCTGTTATTGAACTAACCCATGACCCAGTGGCAAA...GTCATGCCCAGCACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CCA 90 bp GGGCAAGTTTCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACGCGCAGACTTCACCTTaGGCAGCAGGTAGCAAAGTT +
Preference number: 4 (lower is better)
Translates to: GQVSHQLHDVPSSLPHFNAQTSP*AAGSKV
Trigger: AACTTTGCTACCTGCTGCCCAAGGTGAAGTCTGCGC...GTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGAAACTTGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp AGCAGGCAGTACACACCAAGTTGGAGCTCATTACACTGCACTGGAGCACTCGGACACATTTCTAGCTGCTaGAGGAGATGCATGTCTGCA +
Preference number: 4 (lower is better)
Translates to: SRQYTPSWSSLHCTGALGHISSC*RRCMSA
Trigger: TGCAGACATGCATCTCCTCCAGCAGCTAGAAATGTG...TCCGAGTGCTCCAGTGCAGTGTAATGAGCTCCAACTTGGTGTGTACTGCCTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR TCA 90 bp TACTTCCACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGTGCTGGGACATTGATTCTTCCTaGAGGATGGTCAAAAAGGAC +
Preference number: 4 (lower is better)
Translates to: YFHYSLDRLCYLAHGKCWDIDSS*RMVKKD
Trigger: GTCCTTTTTGACCATCCTTCAGGAAGAATCAATGTC...CCAGCACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR TCA 90 bp ATCTTTACTTCCACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGTTCTGCCCCAATGCCCTaGGCTATGTTTTCTAACTGG +
Preference number: 4 (lower is better)
Translates to: IFTSTTLWIGCVTWPTGSSAPMP*AMFSNW
Trigger: CCAGTTAGAAAACATAGCTCAGGGCATTGGGGCAGA...ACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGTAAAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR TCA 90 bp GCTGTGTTACCTGGCCCACGGGAAGTGCTGGGCATGACAGGGTTAGGAGAAAAGAAGGGAAGTATAGTTTaGCTTCTGTCATCTGTATCG +
Preference number: 4 (lower is better)
Translates to: AVLPGPREVLGMTGLGEKKGSIV*LLSSVS
Trigger: CGATACAGATGACAGAAGTCAAACTATACTTCCCTT...CTTTTCTCCTAACCCTGTCATGCCCAGCACTTCCCGTGGGCCAGGTAACACAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR GCA 90 bp AGCAGGCAGTACACACCAAGTTGGAGCTCATTACACTGCACTGGAGCACTCGGAGGATTGAGAATCTCATaGCTCAGGGTTTCTTTTGGC +
Preference number: 4 (lower is better)
Translates to: SRQYTPSWSSLHCTGALGGLRIS*LRVSFG
Trigger: GCCAAAAGAAACCCTGAGGCATGAGATTCTCAATCC...TCCGAGTGCTCCAGTGCAGTGTAATGAGCTCCAACTTGGTGTGTACTGCCTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR GCA 90 bp AGCAGGCAGTACACACCAAGTTGGAGCTCATTACACTGCACTGGAGCACTCGGAATTCTTTGTCAGTTCTaGCCCAATGCCCTGAGCTAT +
Preference number: 4 (lower is better)
Translates to: SRQYTPSWSSLHCTGALGILCQF*PNALSY
Trigger: ATAGCTCAGGGCATTGGGGCAGAACTGACAAAGAAT...TCCGAGTGCTCCAGTGCAGTGTAATGAGCTCCAACTTGGTGTGTACTGCCTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR GCA 90 bp ACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGTGCTGGGCATGACTGGCCATTTTCTTGTTaGAAACCCAGTGTACAAAGT +
Preference number: 4 (lower is better)
Translates to: TTLWIGCVTWPTGSAGHDWPFSC*KPSVQS
Trigger: ACTTTGTACACTGGGTTTGCAACAAGAAAATGGCCA...GTCATGCCCAGCACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR GCA 90 bp ACCACAGACAGCTGCTCTGAGCAGAGAGCTCATAGGAAATACAGTGCCTTCCTTAGCTGCTGGAGGAGATaGATGTCTGCAGGAATCTTC +
Preference number: 4 (lower is better)
Translates to: TTDSCSEQRAHRKYSAFLSCWRR*MSAGIF
Trigger: GAAGATTCCTGCAGACATGCATCTCCTCCAGCAGCT...AAGGAAGGCACTGTATTTCCTATGAGCTCTCTGCTCAGAGCAGCTGTCTGTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR GCA 90 bp TCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCAGCTGCTGGAGGAGATaGATGTCTGCAGGAATCTTC +
Preference number: 4 (lower is better)
Translates to: SHQLHDVPSSLPHFNNPGSCWRR*MSAGIF
Trigger: GAAGATTCCTGCAGACATGCATCTCCTCCAGCAGCT...GCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp GTTACCTGGCCCACGGGAAGTGCTGGGCATGACAGGGTTAGGAGAAAAGGAAGCGCTATGTTTTCTAACTaGCGACACATACAAGATCGA +
Preference number: 4 (lower is better)
Translates to: VTWPTGSAGHDRVRRKGSAMFSN*RHIQDR
Trigger: TCGATCTTGTATGTGTCGCCAGTTAGAAAACATAGC...GCTTCCTTTTCTCCTAACCCTGTCATGCCCAGCACTTCCCGTGGGCCAGGTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CCA 90 bp TTACCTGGCCCACGGGAAGTGCTGGGCATGACAGGGTTAGGAGAAAAGGAAGCTCTCTACGATTTGGGATaGAATCTGGCTTTCATTGTG +
Preference number: 4 (lower is better)
Translates to: LPGPREVLGMTGLGEKEALYDLG*NLAFIV
Trigger: CACAATGAAAGCCAGATTCCATCCCAAATCGTAGAG...AGCTTCCTTTTCTCCTAACCCTGTCATGCCCAGCACTTCCCGTGGGCCAGGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CCA 90 bp GGGCAAGTTTCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACGTCCAGGAACAGAAATaGGCAAGTTCTTGGACAGGC +
Preference number: 4 (lower is better)
Translates to: GQVSHQLHDVPSSLPHFNVQEQK*ASSWTG
Trigger: GCCTGTCCAAGAACTTGCCCATTTCTGTTCCTGGAC...GTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGAAACTTGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp TCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCGTCCAGGAACAGAAATaGGCAAGTTCTTGGACAGGC +
Preference number: 4 (lower is better)
Translates to: SHQLHDVPSSLPHFNNPGVQEQK*ASSWTG
Trigger: GCCTGTCCAAGAACTTGCCCATTTCTGTTCCTGGAC...GCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp CTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCAGGAGAAAAGGAAGCTaGAACACTGCTGGCATTTCG +
Preference number: 4 (lower is better)
Translates to: LPPFHTLTILAVCRCSFSRRKGS*NTAGIS
Trigger: CGAAATGCCAGCAGTGTTCCAGCTTCCTTTTCTCCT...GGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR TCA 90 bp CACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGCCCTGTCAATATCACTaGGATCTTCATCAACAGTCA +
Preference number: 4 (lower is better)
Translates to: HDVPSSLPHFNNPGRLSLPCQYH*DLHQQS
Trigger: TGACTGTTGATGAAGATCTCAGTGATATTGACAGGG...CAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR TCA 90 bp CACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGCACATCTTGACAGAGTaGTTTTACCAGGGGAAGTAT +
Preference number: 4 (lower is better)
Translates to: HDVPSSLPHFNNPGRLSLHILTE*FYQGKY
Trigger: ATACTTCCCCTGGTAAAATCACTCTGTCAAGATGTG...CAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR TCA 90 bp ACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCACCATCAGATTCTCCTCTGCCCCAATGCCCTaGGCTATGTTTTCTAACTGG +
Preference number: 4 (lower is better)
Translates to: TLTILAVCRCSFSTIRFSSAPMP*AMFSNW
Trigger: CCAGTTAGAAAACATAGCTCAGGGCATTGGGGCAGA...GGAGAATCTGATGGTGGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR TCA 90 bp ACTTCCACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGTGCTGGGACAGTTCTTTCGTACTaGAGTATATTTCTTCTCCTG +
Preference number: 4 (lower is better)
Translates to: TSTTLWIGCVTWPTGSAGTVLSY*SIFLLL
Trigger: CAGGAGAAGAAATATACTTCAGTACGAAAGAACTGT...CCCAGCACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR TCA 90 bp TGTCTCTTCAGTCCAGCAGGCAGTACACACCAAGTTGGAGCTCATTACACTGCAGGCACTTCAGGGTCATaGCAAAGGCAGAAGAATGTA +
Preference number: 4 (lower is better)
Translates to: CLFSPAGSTHQVGAHYTAGTSGS*QRQKNV
Trigger: TACATTCTTCTGCCTTTGTCATGACCCTGAAGTGCC...TGCAGTGTAATGAGCTCCAACTTGGTGTGTACTGCCTGCTGGACTGAAGAGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR TCA 90 bp TTTCGAGTTCGGAATGAGTCATCAGTTAGTGACAGCATGGCAGTCCTCACCAGCGGCACTTCAGGGTCATaGCAAAGGCAGAAGAATGTA +
Preference number: 4 (lower is better)
Translates to: FRVRNESSVSDSMAVLTSGTSGS*QRQKNV
Trigger: TACATTCTTCTGCCTTTGTCATGACCCTGAAGTGCC...GCTGGTGAGGACTGCCATGCTGTCACTAACTGATGACTCATTCCGAACTCGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR TCA 90 bp CTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCTCACTCGATATGATATaGGGCAGACAGGTGTACTTC +
Preference number: 4 (lower is better)
Translates to: LPPFHTLTILAVCRCSFSSLDMI*GRQVYF
Trigger: GAAGTACACCTGTCTGCCTCATATCATATCGAGTGA...GGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR TCA 90 bp GCTGTGCATCTTTACTTCCACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACTCACTCGATATGATATaGGGCAGACAGGTGTACTTC +
Preference number: 4 (lower is better)
Translates to: AVHLYFHYSLDRLCYLAHSLDMI*GRQVYF
Trigger: GAAGTACACCTGTCTGCCTCATATCATATCGAGTGA...GTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGTAAAGATGCACAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR TCA 90 bp GGGCAAGTTTCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACGATTTCTTTGCTTGTTaGTGCAGTGCTAGAGGAGGG +
Preference number: 4 (lower is better)
Translates to: GQVSHQLHDVPSSLPHFNDFFAC*CSARGG
Trigger: CCCTCCTCTAGCACTGCATCAACAAGCAAAGAAATC...GTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGAAACTTGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR GCA 90 bp CTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCGGTTTGGGAAAGCTGTaGCTTGGAAACAAGTGGATT +
Preference number: 4 (lower is better)
Translates to: LPPFHTLTILAVCRCSFSGLGKL*LGNKWI
Trigger: AATCCACTTGTTTCCAAGGCACAGCTTTCCCAAACC...GGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR GCA 90 bp ACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTGGTTTGGGAAAGCTGTaGCTTGGAAACAAGTGGATT +
Preference number: 4 (lower is better)
Translates to: TMFLPPFHTLTILAVCRCGLGKL*LGNKWI
Trigger: AATCCACTTGTTTCCAAGGCACAGCTTTCCCAAACC...ACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR GCA 90 bp ACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTATTCTTTGTCAGTTCTaGCCCAATGCCCTGAGCTAT +
Preference number: 4 (lower is better)
Translates to: TMFLPPFHTLTILAVCRCILCQF*PNALSY
Trigger: ATAGCTCAGGGCATTGGGGCAGAACTGACAAAGAAT...ACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR GCA 90 bp CTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCACACACATTTCTAGCTaGTGGAGGAGATGCATGTCT +
Preference number: 4 (lower is better)
Translates to: LPPFHTLTILAVCRCSFSTHISS*WRRCMS
Trigger: AGACATGCATCTCCTCCAGCAGCTAGAAATGTGTGT...GGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR GCA 90 bp AGCAGGCAGTACACACCAAGTTGGAGCTCATTACACTGCACTGGAGCACTCGGAATGTCCTGGAGTCTCTaGGTTTCTTCTCAAAGCTTT +
Preference number: 4 (lower is better)
Translates to: SRQYTPSWSSLHCTGALGMSWSL*VSSQSF
Trigger: AAAGCTTTGAGAAGAAACGCAGAGACTCCAGGACAT...TCCGAGTGCTCCAGTGCAGTGTAATGAGCTCCAACTTGGTGTGTACTGCCTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR CCA 90 bp ATCTTTACTTCCACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGTCTAACTAAACGCGACTaGACGGTTTGGGAAAGCTGT +
Preference number: 4 (lower is better)
Translates to: IFTSTTLWIGCVTWPTGSLTKRD*TVWESC
Trigger: ACAGCTTTCCCAAACCGTCCAGTCGCGTTTAGTTAG...ACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGTAAAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CCA 90 bp GGGCAAGTTTCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACCACATTTCTAGCTGCTaGAGGAGATGCATGTCTGCA +
Preference number: 4 (lower is better)
Translates to: GQVSHQLHDVPSSLPHFNHISSC*RRCMSA
Trigger: TGCAGACATGCATCTCCTCCAGCAGCTAGAAATGTG...GTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGAAACTTGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp ATCTTTACTTCCACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGTCACATTTCTAGCTGCTaGAGGAGATGCATGTCTGCA +
Preference number: 4 (lower is better)
Translates to: IFTSTTLWIGCVTWPTGSHISSC*RRCMSA
Trigger: TGCAGACATGCATCTCCTCCAGCAGCTAGAAATGTG...ACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGTAAAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CCA 90 bp TTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTAGGAGAAAAGGAAGCTaGAACACTGCTGGCATTTCG +
Preference number: 4 (lower is better)
Translates to: FLPPFHTLTILAVCRCSFRRKGS*NTAGIS
Trigger: CGAAATGCCAGCAGTGTTCCAGCTTCCTTTTCTCCT...AAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR TCA 90 bp CAGGCAGTACACACCAAGTTGGAGCTCATTACACTGCACTGGAGCACTCGGATTGACATTGATTCTTCCTaGAGGATGGTCAAAAAGGAC +
Preference number: 4 (lower is better)
Translates to: QAVHTKLELITLHWSTRIDIDSS*RMVKKD
Trigger: GTCCTTTTTGACCATCCTTCAGGAAGAATCAATGTC...AATCCGAGTGCTCCAGTGCAGTGTAATGAGCTCCAACTTGGTGTGTACTGCCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR TCA 90 bp CACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGAAGGGAAGTATAGTTTaGCTTCTGTCATCTGTATCG +
Preference number: 4 (lower is better)
Translates to: HDVPSSLPHFNNPGRLSLKGSIV*LLSSVS
Trigger: CGATACAGATGACAGAAGTCAAACTATACTTCCCTT...CAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR TCA 90 bp ACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGTGCTGATCTGGAGTaGAAATTCCATAGAGTCCAT +
Preference number: 4 (lower is better)
Translates to: TMFLPPFHTLTILAVCRCSADLE*KFHRVH
Trigger: ATGGACTCTATGGAATTTTCACTCCAGATCAGCACT...ACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR TCA 90 bp ACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCACCATCAGATTCTCCGGCACTTCAGGGTCATaGCAAAGGCAGAAGAATGTA +
Preference number: 4 (lower is better)
Translates to: TLTILAVCRCSFSTIRFSGTSGS*QRQKNV
Trigger: TACATTCTTCTGCCTTTGTCATGACCCTGAAGTGCC...GGAGAATCTGATGGTGGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR TCA 90 bp CACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCACCATCAGATTCGATTTCTTTGCTTGTTaGTGCAGTGCTAGAGGAGGG +
Preference number: 4 (lower is better)
Translates to: HTLTILAVCRCSFSTIRFDFFAC*CSARGG
Trigger: CCCTCCTCTAGCACTGCATCAACAAGCAAAGAAATC...GAATCTGATGGTGGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR TCA 90 bp GATTCTCCGCTGACTGCTTGTCTCCTTCACCAAGCAGTTGACTTAAGGATTGGAGGATTTTTCTCTTGTTaGTGCAGTGCTAGAGGAGGG +
Preference number: 4 (lower is better)
Translates to: DSPLTACLLHQAVDLRIGGFFSC*CSARGG
Trigger: CCCTCCTCTAGCACTGCATCAACAAGAGAAAAATCC...TCCAATCCTTAAGTCAACTGCTTGGTGAAGGAGACAAGCAGTCAGCGGAGAATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR GCA 90 bp CAGGCAGTACACACCAAGTTGGAGCTCATTACACTGCACTGGAGCACTCGGATTCAAAAATGGAAGGTTTaGAATCACACTGGCTCCTTG +
Preference number: 4 (lower is better)
Translates to: QAVHTKLELITLHWSTRIQKWKV*NHTGSL
Trigger: CAAGGAGCCAGTGTGATTGCAAACCTTCCATTTTTG...AATCCGAGTGCTCCAGTGCAGTGTAATGAGCTCCAACTTGGTGTGTACTGCCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR GCA 90 bp CATCTTTACTTCCACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGCAAAAATGGAAGGTTTaGAATCACACTGGCTCCTTG +
Preference number: 4 (lower is better)
Translates to: HLYFHYSLDRLCYLAHGKQKWKV*NHTGSL
Trigger: CAAGGAGCCAGTGTGATTGCAAACCTTCCATTTTTG...CTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGTAAAGATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR GCA 90 bp TTTCGAGTTCGGAATGAGTCATCAGTTAGTGACAGCATGGCAGTCCTCACCAGCGGATTGAGAATCTCATaGCTCAGGGTTTCTTTTGGC +
Preference number: 4 (lower is better)
Translates to: FRVRNESSVSDSMAVLTSGLRIS*LRVSFG
Trigger: GCCAAAAGAAACCCTGAGGCATGAGATTCTCAATCC...GCTGGTGAGGACTGCCATGCTGTCACTAACTGATGACTCATTCCGAACTCGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR GCA 90 bp TTTCGAGTTCGGAATGAGTCATCAGTTAGTGACAGCATGGCAGTCCTCACCAGCATTCTTTGTCAGTTCTaGCCCAATGCCCTGAGCTAT +
Preference number: 4 (lower is better)
Translates to: FRVRNESSVSDSMAVLTSILCQF*PNALSY
Trigger: ATAGCTCAGGGCATTGGGGCAGAACTGACAAAGAAT...GCTGGTGAGGACTGCCATGCTGTCACTAACTGATGACTCATTCCGAACTCGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR GCA 90 bp GGGCAAGTTTCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACACACACATTTCTAGCTaGTGGAGGAGATGCATGTCT +
Preference number: 4 (lower is better)
Translates to: GQVSHQLHDVPSSLPHFNTHISS*WRRCMS
Trigger: AGACATGCATCTCCTCCAGCAGCTAGAAATGTGTGT...GTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGAAACTTGCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR GCA 90 bp GTTTCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTAGGAAGCTGGAACACTaGTGGCATTTCGAGTTCGGA +
Preference number: 4 (lower is better)
Translates to: VSHQLHDVPSSLPHFNNPRKLEH*WHFEFG
Trigger: TCCGAACTCGAAATGCCAGCAGTGTTCCAGCTTCCT...AGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGAAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp CAGGCAGTACACACCAAGTTGGAGCTCATTACACTGCACTGGAGCACTCGGATTTGCCTTGGAAACAAGTaGATTGAGAATCTCATGCCT +
Preference number: 4 (lower is better)
Translates to: QAVHTKLELITLHWSTRICLGNK*IENLMP
Trigger: AGGCATGAGATTCTCAATCCACTTGTTTCCAAGGCA...AATCCGAGTGCTCCAGTGCAGTGTAATGAGCTCCAACTTGGTGTGTACTGCCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR CCA 90 bp TTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCTGCTCTACGATTTaGGATGGAATCTGGCTTTCA +
Preference number: 4 (lower is better)
Translates to: FLPPFHTLTILAVCRCSFSCSTI*DGIWLS
Trigger: TGAAAGCCAGATTCCATCCCAAATCGTAGAGCAGGA...AAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp TTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTAATAGTGTGTCTGACTaGCACTTCAGGGTCATGACA +
Preference number: 4 (lower is better)
Translates to: FLPPFHTLTILAVCRCSFNSVSD*HFRVMT
Trigger: TGTCATGACCCTGAAGTGCCAGTCAGACACACTATT...AAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp ACCACAGACAGCTGCTCTGAGCAGAGAGCTCATAGGAAATACAGTGCCTTCCTTCGTGCAGCTGCCCTTTaGACAGGTAAGACATTATTT +
Preference number: 4 (lower is better)
Translates to: TTDSCSEQRAHRKYSAFLRAAAL*TGKTLF
Trigger: AAATAATGTCTTACCTGTCCAAAGGGCAGCTGCACG...AAGGAAGGCACTGTATTTCCTATGAGCTCTCTGCTCAGAGCAGCTGTCTGTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR CCA 90 bp TTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTCGTGCAGCTGCCCTTTaGACAGGTAAGACATTATTT +
Preference number: 4 (lower is better)
Translates to: FLPPFHTLTILAVCRCSFRAAAL*TGKTLF
Trigger: AAATAATGTCTTACCTGTCCAAAGGGCAGCTGCACG...AAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp ACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTTTTGCCACTGGGTCATaGGTTAGTTCAATAACAGGT +
Preference number: 4 (lower is better)
Translates to: TMFLPPFHTLTILAVCRCFATGS*VSSITG
Trigger: ACCTGTTATTGAACTAACCCATGACCCAGTGGCAAA...ACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR TCA 90 bp TCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCGACATTGATTCTTCCTaGAGGATGGTCAAAAAGGAC +
Preference number: 4 (lower is better)
Translates to: SHQLHDVPSSLPHFNNPGDIDSS*RMVKKD
Trigger: GTCCTTTTTGACCATCCTTCAGGAAGAATCAATGTC...GCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR TCA 90 bp AGCAGGCAGTACACACCAAGTTGGAGCTCATTACACTGCACTGGAGCACTCGGAAAAAATCTCAAGTGCTaGTCTGGAGTGAAAATTCCA +
Preference number: 4 (lower is better)
Translates to: SRQYTPSWSSLHCTGALGKNLKC*SGVKIP
Trigger: TGGAATTTTCACTCCAGATCAGCACTTGAGATTTTT...TCCGAGTGCTCCAGTGCAGTGTAATGAGCTCCAACTTGGTGTGTACTGCCTGCT
47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR TCA 90 bp GTTCGGAATGAGTCATCAGTTAGTGACAGCATGGCAGTCCTCACCAGCCCTGAGCAATTAGTTTTTGAATaGCTTCATGCCTCTGCTCTT +
Preference number: 4 (lower is better)
Translates to: VRNESSVSDSMAVLTSPEQLVFE*LHASAL
Trigger: AAGAGCAGAGGCATGAAGTCATTCAAAAACTAATTG...CTCAGGGCTGGTGAGGACTGCCATGCTGTCACTAACTGATGACTCATTCCGAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR GCA 90 bp CTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCTGGCCATTTTCTTGTTaGAAACCCAGTGTACAAAGT +
Preference number: 4 (lower is better)
Translates to: LPPFHTLTILAVCRCSFSWPFSC*KPSVQS
Trigger: ACTTTGTACACTGGGTTTGCAACAAGAAAATGGCCA...GGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR GCA 90 bp TTTAAGGTAGCCTTCCGGGGCTGTGCATCTTTACTTCCACTACTCTTTGGATCGACACACATTTCTAGCTaGTGGAGGAGATGCATGTCT +
Preference number: 4 (lower is better)
Translates to: FKVAFRGCASLLPLLFGSTHISS*WRRCMS
Trigger: AGACATGCATCTCCTCCAGCAGCTAGAAATGTGTGT...CGATCCAAAGAGTAGTGGAAGTAAAGATGCACAGCCCCGGAAGGCTACCTTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR GCA 90 bp TCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCATGTCCTGGAGTCTCTaGGTTTCTTCTCAAAGCTTT +
Preference number: 4 (lower is better)
Translates to: SHQLHDVPSSLPHFNNPGMSWSL*VSSQSF
Trigger: AAAGCTTTGAGAAGAAACGCAGAGACTCCAGGACAT...GCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR GCA 90 bp TTTCGAGTTCGGAATGAGTCATCAGTTAGTGACAGCATGGCAGTCCTCACCAGCATGTCCTGGAGTCTCTaGGTTTCTTCTCAAAGCTTT +
Preference number: 4 (lower is better)
Translates to: FRVRNESSVSDSMAVLTSMSWSL*VSSQSF
Trigger: AAAGCTTTGAGAAGAAACGCAGAGACTCCAGGACAT...GCTGGTGAGGACTGCCATGCTGTCACTAACTGATGACTCATTCCGAACTCGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR GCA 90 bp CACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGCACACTTGTCTAAGGTaGCATATTTTGCATGAAAAG +
Preference number: 4 (lower is better)
Translates to: HDVPSSLPHFNNPGRLSLHTCLR*HILHEK
Trigger: CTTTTCATGCAAAATATGGCACCTTAGACAAGTGTG...CAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp AAGGAAGCTGGAACACTGCTGGCATTTCGAGTTCGGAATGAGTCATCAGTTAGTGGTTTGCAATCACACTaGCTCCTTGGACATCTTGAC +
Preference number: 4 (lower is better)
Translates to: KEAGTLLAFRVRNESSVSGLQSH*LLGHLD
Trigger: GTCAAGATGTCCAAGGAGCCAGTGTGATTGCAAACC...ACTAACTGATGACTCATTCCGAACTCGAAATGCCAGCAGTGTTCCAGCTTCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CCA 90 bp ACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTCTGTCGCATCAAAAATaGAAGGTTTGCAATCACACT +
Preference number: 4 (lower is better)
Translates to: TMFLPPFHTLTILAVCRCLSHQK*KVCNHT
Trigger: AGTGTGATTGCAAACCTTCCATTTTTGATGCGACAG...ACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR CCA 90 bp TTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTCTCTACGATTTGGGATaGAATCTGGCTTTCATTGTG +
Preference number: 4 (lower is better)
Translates to: FLPPFHTLTILAVCRCSFLYDLG*NLAFIV
Trigger: CACAATGAAAGCCAGATTCCATCCCAAATCGTAGAG...AAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp TTACCTGGCCCACGGGAAGTGCTGGGCATGACAGGGTTAGGAGAAAAGGAAGCTAAGTTCCAAGATTTCTaGAAGGTGATTTATAAGAGC +
Preference number: 4 (lower is better)
Translates to: LPGPREVLGMTGLGEKEAKFQDF*KVIYKS
Trigger: GCTCTTATAAATCACCTTCCAGAAATCTTGGAACTT...AGCTTCCTTTTCTCCTAACCCTGTCATGCCCAGCACTTCCCGTGGGCCAGGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CCA 90 bp GAAGCTGGAACACTGCTGGCATTTCGAGTTCGGAATGAGTCATCAGTTAGTGACCGTGCAGCTGCCCTTTaGACAGGTAAGACATTATTT +
Preference number: 4 (lower is better)
Translates to: EAGTLLAFRVRNESSVSDRAAAL*TGKTLF
Trigger: AAATAATGTCTTACCTGTCCAAAGGGCAGCTGCACG...GTCACTAACTGATGACTCATTCCGAACTCGAAATGCCAGCAGTGTTCCAGCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CCA 90 bp TTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTTTGCCACTGGGTCATaGGTTAGTTCAATAACAGGT +
Preference number: 4 (lower is better)
Translates to: FLPPFHTLTILAVCRCSFFATGS*VSSITG
Trigger: ACCTGTTATTGAACTAACCCATGACCCAGTGGCAAA...AAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAA
47% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR TCA 90 bp GAAGCTGGAACACTGCTGGCATTTCGAGTTCGGAATGAGTCATCAGTTAGTGACCACATCTTGACAGAGTaGTTTTACCAGGGGAAGTAT +
Preference number: 4 (lower is better)
Translates to: EAGTLLAFRVRNESSVSDHILTE*FYQGKY
Trigger: ATACTTCCCCTGGTAAAATCACTCTGTCAAGATGTG...GTCACTAACTGATGACTCATTCCGAACTCGAAATGCCAGCAGTGTTCCAGCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR TCA 90 bp ACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAAAAATCTCAAGTGCTaGTCTGGAGTGAAAATTCCA +
Preference number: 4 (lower is better)
Translates to: TMFLPPFHTLTILAVCRCKNLKC*SGVKIP
Trigger: TGGAATTTTCACTCCAGATCAGCACTTGAGATTTTT...ACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR TCA 90 bp CTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCCAATTAGTTTTTGAATaGCTTCATGCCTCTGCTCTT +
Preference number: 4 (lower is better)
Translates to: LPPFHTLTILAVCRCSFSQLVFE*LHASAL
Trigger: AAGAGCAGAGGCATGAAGTCATTCAAAAACTAATTG...GGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR GCA 90 bp GTTTCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGATTGAGAATCTCATaGCTCAGGGTTTCTTTTGGC +
Preference number: 4 (lower is better)
Translates to: VSHQLHDVPSSLPHFNNPGLRIS*LRVSFG
Trigger: GCCAAAAGAAACCCTGAGGCATGAGATTCTCAATCC...AGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR GCA 90 bp GCTGTGCATCTTTACTTCCACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACTATATCGTAGAAAAATaGATAGAGTTCGTGCAGCTG +
Preference number: 4 (lower is better)
Translates to: AVHLYFHYSLDRLCYLAHYIVEK*IEFVQL
Trigger: CAGCTGCACGAACTCTATGCATTTTTCTACGATATA...GTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGTAAAGATGCACAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR GCA 90 bp ACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTCACACTTGTCTAAGGTaGCATATTTTGCATGAAAAG +
Preference number: 4 (lower is better)
Translates to: TMFLPPFHTLTILAVCRCHTCLR*HILHEK
Trigger: CTTTTCATGCAAAATATGGCACCTTAGACAAGTGTG...ACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp TTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTGCTATGTTTTCTAACTaGCGACACATACAAGATCGA +
Preference number: 4 (lower is better)
Translates to: FLPPFHTLTILAVCRCSFAMFSN*RHIQDR
Trigger: TCGATCTTGTATGTGTCGCCAGTTAGAAAACATAGC...AAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp TTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTATTTGGGATGGAATCTaGCTTTCATTGTGGCCATTT +
Preference number: 4 (lower is better)
Translates to: FLPPFHTLTILAVCRCSFIWDGI*LSLWPF
Trigger: AAATGGCCACAATGAAAGCCAGATTCCATCCCAAAT...AAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp TTTCGAGTTCGGAATGAGTCATCAGTTAGTGACAGCATGGCAGTCCTCACCAGCATTTGGGATGGAATCTaGCTTTCATTGTGGCCATTT +
Preference number: 4 (lower is better)
Translates to: FRVRNESSVSDSMAVLTSIWDGI*LSLWPF
Trigger: AAATGGCCACAATGAAAGCCAGATTCCATCCCAAAT...GCTGGTGAGGACTGCCATGCTGTCACTAACTGATGACTCATTCCGAACTCGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR TCA 90 bp GTTTCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTCACATCTTGACAGAGTaGTTTTACCAGGGGAAGTAT +
Preference number: 4 (lower is better)
Translates to: VSHQLHDVPSSLPHFNNPHILTE*FYQGKY
Trigger: ATACTTCCCCTGGTAAAATCACTCTGTCAAGATGTG...AGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR TCA 90 bp TCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCACAGTTCTTTCGTACTaGAGTATATTTCTTCTCCTG +
Preference number: 4 (lower is better)
Translates to: SHQLHDVPSSLPHFNNPGTVLSY*SIFLLL
Trigger: CAGGAGAAGAAATATACTTCAGTACGAAAGAACTGT...GCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR GCA 90 bp ACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTCAGAATGGATTCATCTaGTTTGAAAGACTTTTCACA +
Preference number: 4 (lower is better)
Translates to: TMFLPPFHTLTILAVCRCQNGFI*FERLFT
Trigger: TGTGAAAAGTCTTTCAAAGCAGATGAATCCATTCTG...ACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR GCA 90 bp CACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCACCATCAGATTCTGGCCATTTTCTTGTTaGAAACCCAGTGTACAAAGT +
Preference number: 4 (lower is better)
Translates to: HTLTILAVCRCSFSTIRFWPFSC*KPSVQS
Trigger: ACTTTGTACACTGGGTTTGCAACAAGAAAATGGCCA...GAATCTGATGGTGGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR GCA 90 bp ACCACAGACAGCTGCTCTGAGCAGAGAGCTCATAGGAAATACAGTGCCTTCCTTTATATCGTAGAAAAATaGATAGAGTTCGTGCAGCTG +
Preference number: 4 (lower is better)
Translates to: TTDSCSEQRAHRKYSAFLYIVEK*IEFVQL
Trigger: CAGCTGCACGAACTCTATGCATTTTTCTACGATATA...AAGGAAGGCACTGTATTTCCTATGAGCTCTCTGCTCAGAGCAGCTGTCTGTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR GCA 90 bp GGGCAAGTTTCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACTATATCGTAGAAAAATaGATAGAGTTCGTGCAGCTG +
Preference number: 4 (lower is better)
Translates to: GQVSHQLHDVPSSLPHFNYIVEK*IEFVQL
Trigger: CAGCTGCACGAACTCTATGCATTTTTCTACGATATA...GTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGAAACTTGCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp ACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCACCATCAGATTCTCCATTTGGGATGGAATCTaGCTTTCATTGTGGCCATTT +
Preference number: 4 (lower is better)
Translates to: TLTILAVCRCSFSTIRFSIWDGI*LSLWPF
Trigger: AAATGGCCACAATGAAAGCCAGATTCCATCCCAAAT...GGAGAATCTGATGGTGGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp TGGTTACCAGAAGTCAATTTAGACAAGCAGGCTAAGTTAGACTGCCATGGGATGAATAGTGTGTCTGACTaGCACTTCAGGGTCATGACA +
Preference number: 4 (lower is better)
Translates to: WLPEVNLDKQAKLDCHGMNSVSD*HFRVMT
Trigger: TGTCATGACCCTGAAGTGCCAGTCAGACACACTATT...CATCCCATGGCAGTCTAACTTAGCCTGCTTGTCTAAATTGACTTCTGGTAACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR CCA 90 bp AGAGAAGCTGACAATAGCTTCATACAGTCTGTCTCAGGAAATGACATCTTAAAGGCGCAGACTTCACCTTaGGCAGCAGGTAGCAAAGTT +
Preference number: 4 (lower is better)
Translates to: READNSFIQSVSGNDILKAQTSP*AAGSKV
Trigger: AACTTTGCTACCTGCTGCCCAAGGTGAAGTCTGCGC...CTTTAAGATGTCATTTCCTGAGACAGACTGTATGAAGCTATTGTCAGCTTCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR TCA 90 bp TGGTTACCAGAAGTCAATTTAGACAAGCAGGCTAAGTTAGACTGCCATGGGATGAGTGCTGATCTGGAGTaGAAATTCCATAGAGTCCAT +
Preference number: 4 (lower is better)
Translates to: WLPEVNLDKQAKLDCHGMSADLE*KFHRVH
Trigger: ATGGACTCTATGGAATTTTCACTCCAGATCAGCACT...CATCCCATGGCAGTCTAACTTAGCCTGCTTGTCTAAATTGACTTCTGGTAACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR TCA 90 bp GAAGCTGGAACACTGCTGGCATTTCGAGTTCGGAATGAGTCATCAGTTAGTGACAAAAATCTCAAGTGCTaGTCTGGAGTGAAAATTCCA +
Preference number: 4 (lower is better)
Translates to: EAGTLLAFRVRNESSVSDKNLKC*SGVKIP
Trigger: TGGAATTTTCACTCCAGATCAGCACTTGAGATTTTT...GTCACTAACTGATGACTCATTCCGAACTCGAAATGCCAGCAGTGTTCCAGCTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR TCA 90 bp ACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCACCATCAGATTCTCCACAGTTCTTTCGTACTaGAGTATATTTCTTCTCCTG +
Preference number: 4 (lower is better)
Translates to: TLTILAVCRCSFSTIRFSTVLSY*SIFLLL
Trigger: CAGGAGAAGAAATATACTTCAGTACGAAAGAACTGT...GGAGAATCTGATGGTGGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR GCA 90 bp TGCTGGCATTTCGAGTTCGGAATGAGTCATCAGTTAGTGACAGCATGGCAGTCCCAGAATGGATTCATCTaGTTTGAAAGACTTTTCACA +
Preference number: 4 (lower is better)
Translates to: CWHFEFGMSHQLVTAWQSQNGFI*FERLFT
Trigger: TGTGAAAAGTCTTTCAAAGCAGATGAATCCATTCTG...GGACTGCCATGCTGTCACTAACTGATGACTCATTCCGAACTCGAAATGCCAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR GCA 90 bp AGAGAAGCTGACAATAGCTTCATACAGTCTGTCTCAGGAAATGACATCTTAAAGAGGAAGCTGGAACACTaGTGGCATTTCGAGTTCGGA +
Preference number: 4 (lower is better)
Translates to: READNSFIQSVSGNDILKRKLEH*WHFEFG
Trigger: TCCGAACTCGAAATGCCAGCAGTGTTCCAGCTTCCT...CTTTAAGATGTCATTTCCTGAGACAGACTGTATGAAGCTATTGTCAGCTTCTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR CCA 90 bp ACCACAGACAGCTGCTCTGAGCAGAGAGCTCATAGGAAATACAGTGCCTTCCTTAAGTTCCAAGATTTCTaGAAGGTGATTTATAAGAGC +
Preference number: 4 (lower is better)
Translates to: TTDSCSEQRAHRKYSAFLKFQDF*KVIYKS
Trigger: GCTCTTATAAATCACCTTCCAGAAATCTTGGAACTT...AAGGAAGGCACTGTATTTCCTATGAGCTCTCTGCTCAGAGCAGCTGTCTGTGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR CCA 90 bp TCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCAAGTTCCAAGATTTCTaGAAGGTGATTTATAAGAGC +
Preference number: 4 (lower is better)
Translates to: SHQLHDVPSSLPHFNNPGKFQDF*KVIYKS
Trigger: GCTCTTATAAATCACCTTCCAGAAATCTTGGAACTT...GCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp AGAGAAGCTGACAATAGCTTCATACAGTCTGTCTCAGGAAATGACATCTTAAAGGGTTTGCAATCACACTaGCTCCTTGGACATCTTGAC +
Preference number: 4 (lower is better)
Translates to: READNSFIQSVSGNDILKGLQSH*LLGHLD
Trigger: GTCAAGATGTCCAAGGAGCCAGTGTGATTGCAAACC...CTTTAAGATGTCATTTCCTGAGACAGACTGTATGAAGCTATTGTCAGCTTCTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR TCA 90 bp ATGGAATTATTAGCATTAGTACAAATGGTGCTGTTGACATGGCGTGAGCATGATTCACTCGATATGATATaGGGCAGACAGGTGTACTTC +
Preference number: 4 (lower is better)
Translates to: MELLALVQMVLLTWREHDSLDMI*GRQVYF
Trigger: GAAGTACACCTGTCTGCCTCATATCATATCGAGTGA...ATCATGCTCACGCCATGTCAACAGCACCATTTGTACTAATGCTAATAATTCCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR GCA 90 bp GTTTCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTCAGAATGGATTCATCTaGTTTGAAAGACTTTTCACA +
Preference number: 4 (lower is better)
Translates to: VSHQLHDVPSSLPHFNNPQNGFI*FERLFT
Trigger: TGTGAAAAGTCTTTCAAAGCAGATGAATCCATTCTG...AGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CCA 90 bp ATGGAATTATTAGCATTAGTACAAATGGTGCTGTTGACATGGCGTGAGCATGATCTCTACGATTTGGGATaGAATCTGGCTTTCATTGTG +
Preference number: 4 (lower is better)
Translates to: MELLALVQMVLLTWREHDLYDLG*NLAFIV
Trigger: CACAATGAAAGCCAGATTCCATCCCAAATCGTAGAG...ATCATGCTCACGCCATGTCAACAGCACCATTTGTACTAATGCTAATAATTCCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR TCA 90 bp ATGGAATTATTAGCATTAGTACAAATGGTGCTGTTGACATGGCGTGAGCATGATAAGGGAAGTATAGTTTaGCTTCTGTCATCTGTATCG +
Preference number: 4 (lower is better)
Translates to: MELLALVQMVLLTWREHDKGSIV*LLSSVS
Trigger: CGATACAGATGACAGAAGTCAAACTATACTTCCCTT...ATCATGCTCACGCCATGTCAACAGCACCATTTGTACTAATGCTAATAATTCCAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR CCA 90 bp AGAGAAGCTGACAATAGCTTCATACAGTCTGTCTCAGGAAATGACATCTTAAAGGCTATGTTTTCTAACTaGCGACACATACAAGATCGA +
Preference number: 4 (lower is better)
Translates to: READNSFIQSVSGNDILKAMFSN*RHIQDR
Trigger: TCGATCTTGTATGTGTCGCCAGTTAGAAAACATAGC...CTTTAAGATGTCATTTCCTGAGACAGACTGTATGAAGCTATTGTCAGCTTCTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR CAA 90 bp GCTGTGTTACCTGGCCCACGGGAAGTGCTGGGCATGACAGGGTTAGGAGAAAAGATTTCTTCTGGTGTCTaGAGGCTCCGGCGGACCGGC +
Preference number: 5 (lower is better)
Translates to: AVLPGPREVLGMTGLGEKISSGV*RLRRTG
Trigger: GCCGGTCCGCCGGAGCCTCAAGACACCAGAAGAAAT...CTTTTCTCCTAACCCTGTCATGCCCAGCACTTCCCGTGGGCCAGGTAACACAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CAA 90 bp CTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGTGCTGGGCATGACAGGGTTTGGACAGGCTCTGAGTaGATGTCCTGGAGTCTCTGC +
Preference number: 5 (lower is better)
Translates to: LWIGCVTWPTGSAGHDRVWTGSE*MSWSLC
Trigger: GCAGAGACTCCAGGACATCAACTCAGAGCCTGTCCA...AACCCTGTCATGCCCAGCACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CAA 90 bp AGCAGGCAGTACACACCAAGTTGGAGCTCATTACACTGCACTGGAGCACTCGGAATTTCTTCTGGTGTCTaGAGGCTCCGGCGGACCGGC +
Preference number: 5 (lower is better)
Translates to: SRQYTPSWSSLHCTGALGISSGV*RLRRTG
Trigger: GCCGGTCCGCCGGAGCCTCAAGACACCAGAAGAAAT...TCCGAGTGCTCCAGTGCAGTGTAATGAGCTCCAACTTGGTGTGTACTGCCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR CAA 90 bp GAGTCATCAGTTAGTGACAGCATGGCAGTCCTCACCAGCCCTGAGACGGAAGACTTCTTCTCAAAGCTTTaGTCACTGGCCAGCCTCCCG +
Preference number: 5 (lower is better)
Translates to: ESSVSDSMAVLTSPETEDFFSKL*SLASLP
Trigger: CGGGAGGCTGGCCAGTGACAAAAGCTTTGAGAAGAA...GTCTTCCGTCTCAGGGCTGGTGAGGACTGCCATGCTGTCACTAACTGATGACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CAA 90 bp CCACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGTGCTGGGCATGTTGGAAACAAGTGGATaGAGAATCTCATGCCTCAGG +
Preference number: 5 (lower is better)
Translates to: PLLFGSAVLPGPREVLGMLETSG*RISCLR
Trigger: CCTGAGGCATGAGATTCTCAATCCACTTGTTTCCAA...CATGCCCAGCACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CAA 90 bp TTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTACGCGACTGGACGGTTaGGGAAAGCTGTGCCTTGGA +
Preference number: 5 (lower is better)
Translates to: FLPPFHTLTILAVCRCSFTRLDG*GKLCLG
Trigger: TCCAAGGCACAGCTTTCCCAAACCGTCCAGTCGCGT...AAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CAA 90 bp GGGCAAGTTTCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACACGCGACTGGACGGTTaGGGAAAGCTGTGCCTTGGA +
Preference number: 5 (lower is better)
Translates to: GQVSHQLHDVPSSLPHFNTRLDG*GKLCLG
Trigger: TCCAAGGCACAGCTTTCCCAAACCGTCCAGTCGCGT...GTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGAAACTTGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CAA 90 bp ATCTTTACTTCCACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGTACGCGACTGGACGGTTaGGGAAAGCTGTGCCTTGGA +
Preference number: 5 (lower is better)
Translates to: IFTSTTLWIGCVTWPTGSTRLDG*GKLCLG
Trigger: TCCAAGGCACAGCTTTCCCAAACCGTCCAGTCGCGT...ACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGTAAAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CAA 90 bp CTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCTGGACAGGCTCTGAGTaGATGTCCTGGAGTCTCTGC +
Preference number: 5 (lower is better)
Translates to: LPPFHTLTILAVCRCSFSWTGSE*MSWSLC
Trigger: GCAGAGACTCCAGGACATCAACTCAGAGCCTGTCCA...GGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CAA 90 bp ACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTTGGACAGGCTCTGAGTaGATGTCCTGGAGTCTCTGC +
Preference number: 5 (lower is better)
Translates to: TMFLPPFHTLTILAVCRCWTGSE*MSWSLC
Trigger: GCAGAGACTCCAGGACATCAACTCAGAGCCTGTCCA...ACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CAA 90 bp TACTTCCACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGTGCTGGAGGACTTCTCTGACTTaGGGTAAGACTCTCCGAAGT +
Preference number: 5 (lower is better)
Translates to: YFHYSLDRLCYLAHGKCWRTSLT*GKTLRS
Trigger: ACTTCGGAGAGTCTTACCCAAAGTCAGAGAAGTCCT...CCAGCACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CAA 90 bp TTACCTGGCCCACGGGAAGTGCTGGGCATGACAGGGTTAGGAGAAAAGGAAGCTAGGTGTGGACTGACATaGATTCTTCCTGAAGGATGG +
Preference number: 5 (lower is better)
Translates to: LPGPREVLGMTGLGEKEARCGLT*ILPEGW
Trigger: CCATCCTTCAGGAAGAATCAATGTCAGTCCACACCT...AGCTTCCTTTTCTCCTAACCCTGTCATGCCCAGCACTTCCCGTGGGCCAGGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CAA 90 bp TACTTCCACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGTGCTGGGCCTCAGGGTTTCTTTaGGCAATAATTCTACTGCGG +
Preference number: 5 (lower is better)
Translates to: YFHYSLDRLCYLAHGKCWASGFL*AIILLR
Trigger: CCGCAGTAGAATTATTGCCAAAAGAAACCCTGAGGC...CCAGCACTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS GCA 90 bp AAAAAGGACACTGCAGCCGTTAGCTGCATCTCCACGCTTGCGACATaGAGGACTTCTCTGACTTTGGGTAAGACTCTCCGAAGTGTCTCA +
Preference number: 5 (lower is better)
Translates to: KKDTAAVSCISTLAT*RTSLTLGKTLRSVS
Trigger: TGAGACACTTCGGAGAGTCTTACCCAAAGTCAGAGAAGTCCTGCATGTCGCAAGCGTGGAGATGCAGCTAACGGCTGCAGTGTCCTTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000189871.7
CDS CCA 90 bp AGGAGTGTGCACAGGTGTGGACTGACATTGATTCTTCCTGAAGGATaGTCAAAAAGGACACTGCAGCCGTTAGCTGCATCTCCACGCTTG +
Preference number: 5 (lower is better)
Translates to: RSVHRCGLTLILPEG*SKRTLQPLAASPRL
Trigger: CAAGCGTGGAGATGCAGCTAACGGCTGCAGTGTCCTTTTTGACCATCCTTCAGGAAGAATCAATGTCAGTCCACACCTGTGCACACTCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000189871.7
CDS CCA 90 bp GGAGGAGATGCATGTCTGCAGGAATCTTCAGCGCAGACTTCACCTTaGGCAGCAGGTAGCAAAGTTTCATTCTCACATTTGCCACTGGGT +
Preference number: 5 (lower is better)
Translates to: GGDACLQESSAQTSP*AAGSKVSFSHLPLG
Trigger: ACCCAGTGGCAAATGTGAGAATGAAACTTTGCTACCTGCTGCCCAAGGTGAAGTCTGCGCTGAAGATTCCTGCAGACATGCATCTCCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS-3UTR CAA 90 bp CATCTTTACTTCCACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACGGGAAGGAAGCACCACATTCTTaGTCAGTTCTGCCCCAATGC +
Preference number: 5 (lower is better)
Translates to: HLYFHYSLDRLCYLAHGKEAPHS*SVLPQC
Trigger: GCATTGGGGCAGAACTGACAAAGAATGTGGTGCTTC...CTTCCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGTAAAGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CAA 90 bp TTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTTCTTCTCAAAGCTTTaGTCACTGGCCAGCCTCCCG +
Preference number: 5 (lower is better)
Translates to: FLPPFHTLTILAVCRCSFFFSKL*SLASLP
Trigger: CGGGAGGCTGGCCAGTGACAAAAGCTTTGAGAAGAA...AAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS TCA 90 bp CGTTTCTTCTCAAAGCTTTTGTCACTGGCCAGCCTCCCGTCACTCTaGTGCTTCTCCTTCTCCAGCTGTTCCATTTCCAAAAACAGCAGC +
Preference number: 5 (lower is better)
Translates to: RFFSKLLSLASLPSL*CFSFSSCSISKNSS
Trigger: GCTGCTGTTTTTGGAAATGGAACAGCTGGAGAAGGAGAAGCATCAGAGTGACGGGAGGCTGGCCAGTGACAAAAGCTTTGAGAAGAAACG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS TCA 90 bp GAGGAGGGTCCAGGAACAGAAATGGGCAAGTTCTTGGACAGGCTCTaGGTTGATGTCCTGGAGTCTCTGCGTTTCTTCTCAAAGCTTTTG +
Preference number: 5 (lower is better)
Translates to: EEGPGTEMGKFLDRL*VDVLESLRFFSKLL
Trigger: CAAAAGCTTTGAGAAGAAACGCAGAGACTCCAGGACATCAACTCAGAGCCTGTCCAAGAACTTGCCCATTTCTGTTCCTGGACCCTCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS CCA 90 bp GAACAGAAATGGGCAAGTTCTTGGACAGGCTCTGAGTTGATGTCCTaGAGTCTCTGCGTTTCTTCTCAAAGCTTTTGTCACTGGCCAGCC +
Preference number: 5 (lower is better)
Translates to: EQKWASSWTGSELMS*SLCVSSQSFCHWPA
Trigger: GGCTGGCCAGTGACAAAAGCTTTGAGAAGAAACGCAGAGACTCCAGGACATCAACTCAGAGCCTGTCCAAGAACTTGCCCATTTCTGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS-3UTR CAA 90 bp ACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCACCATCAGATTCTCCGGCTCCTTGGACATCTaGACCAGCACTGAGCAGATA +
Preference number: 5 (lower is better)
Translates to: TLTILAVCRCSFSTIRFSGSLDI*TSTEQI
Trigger: TATCTGCTCAGTGCTGGTCAAGATGTCCAAGGAGCC...GGAGAATCTGATGGTGGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR CAA 90 bp AGGAAGCTGGAACACTGCTGGCATTTCGAGTTCGGAATGAGTCATCAGTTAGTGGGCTCCTTGGACATCTaGACCAGCACTGAGCAGATA +
Preference number: 5 (lower is better)
Translates to: RKLEHCWHFEFGMSHQLVGSLDI*TSTEQI
Trigger: TATCTGCTCAGTGCTGGTCAAGATGTCCAAGGAGCC...CACTAACTGATGACTCATTCCGAACTCGAAATGCCAGCAGTGTTCCAGCTTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CAA 90 bp ACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGGACTTCTCTGACTTaGGGTAAGACTCTCCGAAGT +
Preference number: 5 (lower is better)
Translates to: TMFLPPFHTLTILAVCRCRTSLT*GKTLRS
Trigger: ACTTCGGAGAGTCTTACCCAAAGTCAGAGAAGTCCT...ACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR CAA 90 bp CTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCAGGTGTGGACTGACATaGATTCTTCCTGAAGGATGG +
Preference number: 5 (lower is better)
Translates to: LPPFHTLTILAVCRCSFSRCGLT*ILPEGW
Trigger: CCATCCTTCAGGAAGAATCAATGTCAGTCCACACCT...GGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CAA 90 bp CTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCGCCTCAGGGTTTCTTTaGGCAATAATTCTACTGCGG +
Preference number: 5 (lower is better)
Translates to: LPPFHTLTILAVCRCSFSASGFL*AIILLR
Trigger: CCGCAGTAGAATTATTGCCAAAAGAAACCCTGAGGC...GGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CAA 90 bp GGGCAAGTTTCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACGAAGCACCACATTCTTaGTCAGTTCTGCCCCAATGC +
Preference number: 5 (lower is better)
Translates to: GQVSHQLHDVPSSLPHFNEAPHS*SVLPQC
Trigger: GCATTGGGGCAGAACTGACAAAGAATGTGGTGCTTC...GTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGAAACTTGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CAA 90 bp ACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCACCATCAGATTCTCCTTCTTCTCAAAGCTTTaGTCACTGGCCAGCCTCCCG +
Preference number: 5 (lower is better)
Translates to: TLTILAVCRCSFSTIRFSFFSKL*SLASLP
Trigger: CGGGAGGCTGGCCAGTGACAAAAGCTTTGAGAAGAA...GGAGAATCTGATGGTGGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS TCA 90 bp GGGTCCAGGAACAGAAATGGGCAAGTTCTTGGACAGGCTCTGAGTTaGTGTCCTGGAGTCTCTGCGTTTCTTCTCAAAGCTTTTGTCACT +
Preference number: 5 (lower is better)
Translates to: GSRNRNGQVLGQALS*CPGVSAFLLKAFVT
Trigger: AGTGACAAAAGCTTTGAGAAGAAACGCAGAGACTCCAGGACATCAACTCAGAGCCTGTCCAAGAACTTGCCCATTTCTGTTCCTGGACCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS GCA 90 bp CCGAAGTGTCTCAGTAGGATTCTGTCGCATCAAAAATGGAAGGTTTaGAATCACACTGGCTCCTTGGACATCTTGACCAGCACTGAGCAG +
Preference number: 5 (lower is better)
Translates to: PKCLSRILSHQKWKV*NHTGSLDILTSTEQ
Trigger: CTGCTCAGTGCTGGTCAAGATGTCCAAGGAGCCAGTGTGATTGCAAACCTTCCATTTTTGATGCGACAGAATCCTACTGAGACACTTCGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000189871.7
CDS CCA 90 bp ACGCTCTCAGGAATTTCATGCAGAGAGAAGAGGGAACCTGAGTTCTaGGAAGCAGAGGGGGATTTTTCTCTTGTTGATGCAGTGCTAGAG +
Preference number: 5 (lower is better)
Translates to: TLSGISCREKREPEF*EAEGDFSLVDAVLE
Trigger: CTCTAGCACTGCATCAACAAGAGAAAAATCCCCCTCTGCTTCCCAGAACTCAGGTTCCCTCTTCTCTCTGCATGAAATTCCTGAGAGCGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CAA 90 bp GTGCATCTTTACTTCCACTACTCTTTGGATCGGCTGTGTTACCTGGCCCACGGGTCAAAAATGGAAGGTTaGCAATCACACTGGCTCCTT +
Preference number: 5 (lower is better)
Translates to: VHLYFHYSLDRLCYLAHGSKMEG*QSHWLL
Trigger: AAGGAGCCAGTGTGATTGCAAACCTTCCATTTTTGA...CCCGTGGGCCAGGTAACACAGCCGATCCAAAGAGTAGTGGAAGTAAAGATGCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CAA 90 bp TTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTGCCTCAGGGTTTCTTTaGGCAATAATTCTACTGCGG +
Preference number: 5 (lower is better)
Translates to: FLPPFHTLTILAVCRCSFASGFL*AIILLR
Trigger: CCGCAGTAGAATTATTGCCAAAAGAAACCCTGAGGC...AAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CAA 90 bp CTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCTTGGAAACAAGTGGATaGAGAATCTCATGCCTCAGG +
Preference number: 5 (lower is better)
Translates to: LPPFHTLTILAVCRCSFSLETSG*RISCLR
Trigger: CCTGAGGCATGAGATTCTCAATCCACTTGTTTCCAA...GGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CAA 90 bp TCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCTGGGAAAGCTGTGCCTaGGAAACAAGTGGATTGAGA +
Preference number: 5 (lower is better)
Translates to: SHQLHDVPSSLPHFNNPGWESCA*ETSGLR
Trigger: TCTCAATCCACTTGTTTCCAAGGCACAGCTTTCCCA...GCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CAA 90 bp ACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTGTGGCCATTTTCTTGTaGCAAACCCAGTGTACAAAG +
Preference number: 5 (lower is better)
Translates to: TMFLPPFHTLTILAVCRCVAIFL*QTQCTK
Trigger: CTTTGTACACTGGGTTTGCAACAAGAAAATGGCCAC...ACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CAA 90 bp CACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCACCATCAGATTCCTCCTGCTCTACGATTaGGGATGGAATCTGGCTTTC +
Preference number: 5 (lower is better)
Translates to: HTLTILAVCRCSFSTIRFLLLYD*GWNLAF
Trigger: GAAAGCCAGATTCCATCCCAAATCGTAGAGCAGGAG...GAATCTGATGGTGGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CAA 90 bp ACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCACCATCAGATTCTCCCTCCTGCTCTACGATTaGGGATGGAATCTGGCTTTC +
Preference number: 5 (lower is better)
Translates to: TLTILAVCRCSFSTIRFSLLLYD*GWNLAF
Trigger: GAAAGCCAGATTCCATCCCAAATCGTAGAGCAGGAG...GGAGAATCTGATGGTGGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CAA 90 bp TTTAAGGTAGCCTTCCGGGGCTGTGCATCTTTACTTCCACTACTCTTTGGATCGCTCCTGCTCTACGATTaGGGATGGAATCTGGCTTTC +
Preference number: 5 (lower is better)
Translates to: FKVAFRGCASLLPLLFGSLLLYD*GWNLAF
Trigger: GAAAGCCAGATTCCATCCCAAATCGTAGAGCAGGAG...CGATCCAAAGAGTAGTGGAAGTAAAGATGCACAGCCCCGGAAGGCTACCTTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CAA 90 bp CACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCACCATCAGATTCAGGTGTGGACTGACATaGATTCTTCCTGAAGGATGG +
Preference number: 5 (lower is better)
Translates to: HTLTILAVCRCSFSTIRFRCGLT*ILPEGW
Trigger: CCATCCTTCAGGAAGAATCAATGTCAGTCCACACCT...GAATCTGATGGTGGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CAA 90 bp GATTCTCCGCTGACTGCTTGTCTCCTTCACCAAGCAGTTGACTTAAGGATTGGATGGGAAAGCTGTGCCTaGGAAACAAGTGGATTGAGA +
Preference number: 5 (lower is better)
Translates to: DSPLTACLLHQAVDLRIGWESCA*ETSGLR
Trigger: TCTCAATCCACTTGTTTCCAAGGCACAGCTTTCCCA...TCCAATCCTTAAGTCAACTGCTTGGTGAAGGAGACAAGCAGTCAGCGGAGAATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CAA 90 bp GTTTCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGAAGCACCACATTCTTaGTCAGTTCTGCCCCAATGC +
Preference number: 5 (lower is better)
Translates to: VSHQLHDVPSSLPHFNNPEAPHS*SVLPQC
Trigger: GCATTGGGGCAGAACTGACAAAGAATGTGGTGCTTC...AGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CAA 90 bp CTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCATTGTGGCCATTTTCTaGTTGCAAACCCAGTGTACA +
Preference number: 5 (lower is better)
Translates to: LPPFHTLTILAVCRCSFSIVAIF*LQTQCT
Trigger: TGTACACTGGGTTTGCAACAAGAAAATGGCCACAAT...GGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CAA 90 bp GGGCAAGTTTCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACGTTTCATTCTCACATTaGCCACTGGGTCATGGGTTA +
Preference number: 5 (lower is better)
Translates to: GQVSHQLHDVPSSLPHFNVSFSH*PLGHGL
Trigger: TAACCCATGACCCAGTGGCAAATGTGAGAATGAAAC...GTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGAAACTTGCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS TCA 90 bp CTTGGGCAGCAGGTAGCAAAGTTTCATTCGAGTTATGAAGCCAACTaGGAAGTCCATCAACAGACAACTCACATTTGCCACTGGGTCATG +
Preference number: 5 (lower is better)
Translates to: LGQQVAKFHSSYEAN*EVHQQTTHICHWVM
Trigger: CATGACCCAGTGGCAAATGTGAGTTGTCTGTTGATGGACTTCTCAGTTGGCTTCATAACTCGAATGAAACTTTGCTACCTGCTGCCCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190151.2
CDS-3UTR CAA 90 bp CACACTTTAACAATCCTGGCCGTCTGTCGCTGTAGCTTTTCCACCATCAGATTCTTGGAAACAAGTGGATaGAGAATCTCATGCCTCAGG +
Preference number: 5 (lower is better)
Translates to: HTLTILAVCRCSFSTIRFLETSG*RISCLR
Trigger: CCTGAGGCATGAGATTCTCAATCCACTTGTTTCCAA...GAATCTGATGGTGGAAAAGCTACAGCGACAGACGGCCAGGATTGTTAAAGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CAA 90 bp GATTCTCCGCTGACTGCTTGTCTCCTTCACCAAGCAGTTGACTTAAGGATTGGAGTGGCCATTTTCTTGTaGCAAACCCAGTGTACAAAG +
Preference number: 5 (lower is better)
Translates to: DSPLTACLLHQAVDLRIGVAIFL*QTQCTK
Trigger: CTTTGTACACTGGGTTTGCAACAAGAAAATGGCCAC...TCCAATCCTTAAGTCAACTGCTTGGTGAAGGAGACAAGCAGTCAGCGGAGAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CAA 90 bp TGCTGGCATTTCGAGTTCGGAATGAGTCATCAGTTAGTGACAGCATGGCAGTCCATTGTGGCCATTTTCTaGTTGCAAACCCAGTGTACA +
Preference number: 5 (lower is better)
Translates to: CWHFEFGMSHQLVTAWQSIVAIF*LQTQCT
Trigger: TGTACACTGGGTTTGCAACAAGAAAATGGCCACAAT...GGACTGCCATGCTGTCACTAACTGATGACTCATTCCGAACTCGAAATGCCAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CAA 90 bp TTTAAGGTAGCCTTCCGGGGCTGTGCATCTTTACTTCCACTACTCTTTGGATCGGTTTCATTCTCACATTaGCCACTGGGTCATGGGTTA +
Preference number: 5 (lower is better)
Translates to: FKVAFRGCASLLPLLFGSVSFSH*PLGHGL
Trigger: TAACCCATGACCCAGTGGCAAATGTGAGAATGAAAC...CGATCCAAAGAGTAGTGGAAGTAAAGATGCACAGCCCCGGAAGGCTACCTTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS-3UTR CAA 90 bp CACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGCTTTTACTAGCACACTaGTCTAAGGTGCCATATTTT +
Preference number: 5 (lower is better)
Translates to: HDVPSSLPHFNNPGRLSLLLLAH*SKVPYF
Trigger: AAAATATGGCACCTTAGACAAGTGTGCTAGTAAAAG...CAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS TCA 90 bp CAGACTTCACCTTGGGCAGCAGGTAGCAAAGTTTCATTCGAGTTATaGAGCCAACTGAGAAGTCCATCAACAGACAACTCACATTTGCCA +
Preference number: 5 (lower is better)
Translates to: QTSPWAAGSKVSFEL*SQLRSPSTDNSHLP
Trigger: TGGCAAATGTGAGTTGTCTGTTGATGGACTTCTCAGTTGGCTTCATAACTCGAATGAAACTTTGCTACCTGCTGCCCAAGGTGAAGTCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190151.2
CDS-3UTR CAA 90 bp GTTTCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGTTTCATTCTCACATTaGCCACTGGGTCATGGGTTA +
Preference number: 5 (lower is better)
Translates to: VSHQLHDVPSSLPHFNNPVSFSH*PLGHGL
Trigger: TAACCCATGACCCAGTGGCAAATGTGAGAATGAAAC...AGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGAAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CAA 90 bp ACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTTGGCTTCGAGTCAATTaGGATTTCTTGATTTCTTTG +
Preference number: 5 (lower is better)
Translates to: TMFLPPFHTLTILAVCRCWLRVN*DFLISL
Trigger: CAAAGAAATCAAGAAATCCAAATTGACTCGAAGCCA...ACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CAA 90 bp ACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCCGTCTGTCGCTGTCTTTTACTAGCACACTaGTCTAAGGTGCCATATTTT +
Preference number: 5 (lower is better)
Translates to: TMFLPPFHTLTILAVCRCLLLAH*SKVPYF
Trigger: AAAATATGGCACCTTAGACAAGTGTGCTAGTAAAAG...ACAGCGACAGACGGCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CAA 90 bp TGTCTCTTCAGTCCAGCAGGCAGTACACACCAAGTTGGAGCTCATTACACTGCAGATTTCTTGATTTCTTaGCTTGTTGATGCAGTGCTA +
Preference number: 5 (lower is better)
Translates to: CLFSPAGSTHQVGAHYTADFLIS*LVDAVL
Trigger: TAGCACTGCATCAACAAGCAAAGAAATCAAGAAATC...TGCAGTGTAATGAGCTCCAACTTGGTGTGTACTGCCTGCTGGACTGAAGAGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR CAA 90 bp TCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGGCTGGCTTCGAGTCAATTaGGATTTCTTGATTTCTTTG +
Preference number: 5 (lower is better)
Translates to: SHQLHDVPSSLPHFNNPGWLRVN*DFLISL
Trigger: CAAAGAAATCAAGAAATCCAAATTGACTCGAAGCCA...GCCAGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS-3UTR CAA 90 bp AGAGAAGCTGACAATAGCTTCATACAGTCTGTCTCAGGAAATGACATCTTAAAGAATCACACTGGCTCCTaGGACATCTTGACCAGCACT +
Preference number: 5 (lower is better)
Translates to: READNSFIQSVSGNDILKNHTGS*DILTST
Trigger: AGTGCTGGTCAAGATGTCCAAGGAGCCAGTGTGATT...CTTTAAGATGTCATTTCCTGAGACAGACTGTATGAAGCTATTGTCAGCTTCTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR CAA 90 bp ATGGAATTATTAGCATTAGTACAAATGGTGCTGTTGACATGGCGTGAGCATGATTGGGAAAGCTGTGCCTaGGAAACAAGTGGATTGAGA +
Preference number: 5 (lower is better)
Translates to: MELLALVQMVLLTWREHDWESCA*ETSGLR
Trigger: TCTCAATCCACTTGTTTCCAAGGCACAGCTTTCCCA...ATCATGCTCACGCCATGTCAACAGCACCATTTGTACTAATGCTAATAATTCCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS-3UTR CAA 90 bp GTTTCACATCAGCTGCACGATGTTCCTTCCTCCCTTCCACACTTTAACAATCCTGATTTCTTGATTTCTTaGCTTGTTGATGCAGTGCTA +
Preference number: 5 (lower is better)
Translates to: VSHQLHDVPSSLPHFNNPDFLIS*LVDAVL
Trigger: TAGCACTGCATCAACAAGCAAAGAAATCAAGAAATC...AGGATTGTTAAAGTGTGGAAGGGAGGAAGGAACATCGTGCAGCTGATGTGAAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
CDS TCA 90 bp GCGACACATACAAGATCGAACTTCATATTCCACATCTTGACAGAGTaGTTTTACCAGGGGAAGTATTTCTCTCTTAATGCTATGGGCATC +
Preference number: 5 (lower is better)
Translates to: ATHTRSNFIFHILTE*FYQGKYFSLNAMGI
Trigger: GATGCCCATAGCATTAAGAGAGAAATACTTCCCCTGGTAAAATCACTCTGTCAAGATGTGGAATATGAAGTTCGATCTTGTATGTGTCGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS-3UTR CAA 90 bp AGAGAAGCTGACAATAGCTTCATACAGTCTGTCTCAGGAAATGACATCTTAAAGGTGGCCATTTTCTTGTaGCAAACCCAGTGTACAAAG +
Preference number: 5 (lower is better)
Translates to: READNSFIQSVSGNDILKVAIFL*QTQCTK
Trigger: CTTTGTACACTGGGTTTGCAACAAGAAAATGGCCAC...CTTTAAGATGTCATTTCCTGAGACAGACTGTATGAAGCTATTGTCAGCTTCTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS TCA 90 bp AAAAACAATCATGGCCGGAAAGTTGTAAGCACAGTTCTTTCGTACTaGAGTATATTTCTTCTCCTGCTCTACGATTTGGGATGGAATCTG +
Preference number: 5 (lower is better)
Translates to: KNNHGRKVVSTVLSY*SIFLLLLYDLGWNL
Trigger: CAGATTCCATCCCAAATCGTAGAGCAGGAGAAGAAATATACTTCAGTACGAAAGAACTGTGCTTACAACTTTCCGGCCATGATTGTTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
ENSMUST00000190664.2
CDS-3UTR CAA 90 bp ATGGAATTATTAGCATTAGTACAAATGGTGCTGTTGACATGGCGTGAGCATGATTCAAAAATGGAAGGTTaGCAATCACACTGGCTCCTT +
Preference number: 5 (lower is better)
Translates to: MELLALVQMVLLTWREHDSKMEG*QSHWLL
Trigger: AAGGAGCCAGTGTGATTGCAAACCTTCCATTTTTGA...ATCATGCTCACGCCATGTCAACAGCACCATTTGTACTAATGCTAATAATTCCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021631.12
CDS TCA 90 bp TCTAACTGGCGACACATACAAGATCGAACTTCATATTCCACATCTTaGCAGAGTGATTTTACCAGGGGAAGTATTTCTCTCTTAATGCTA +
Preference number: 5 (lower is better)
Translates to: SNWRHIQDRTSYSTS*QSDFTRGSISLLML
Trigger: TAGCATTAAGAGAGAAATACTTCCCCTGGTAAAATCACTCTGTCAAGATGTGGAATATGAAGTTCGATCTTGTATGTGTCGCCAGTTAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS TCA 90 bp TTGAAAGACTTTTCACAGAACGATTTCACTAAGGGAAGTATAGTTTaGCTTCTGTCATCTGTATCGAACATGTCAAGCATGTTAACCAAG +
Preference number: 5 (lower is better)
Translates to: LKDFSQNDFTKGSIV*LLSSVSNMSSMLTK
Trigger: CTTGGTTAACATGCTTGACATGTTCGATACAGATGACAGAAGTCAAACTATACTTCCCTTAGTGAAATCGTTCTGTGAAAAGTCTTTCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
ENSMUST00000190664.2
CDS GCA 72 bp ACTGCAGCCGTTAGCTGCATCTCCACGCTTGCGACATaGAGGACTTCTCTGACTTTGGGTAAGACTCTCCGA +
Preference number: 6 (lower is better)
Translates to: TAAVSCISTLAT*RTSLTLGKTLR
Trigger: TCGGAGAGTCTTACCCAAAGTCAGAGAAGTCCTGCATGTCGCAAGCGTGGAGATGCAGCTAACGGCTGCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000189871.7
CDS CAA 90 bp GTTAGCTGCATCTCCACGCTTGCGACATGCAGGACTTCTCTGACTTaGGGTAAGACTCTCCGAAGTGTCTCAGTAGGATTCTGTCGCATC +
Preference number: 6 (lower is better)
Translates to: VSCISTLATCRTSLT*GKTLRSVSVGFCRI
Trigger: GATGCGACAGAATCCTACTGAGACACTTCGGAGAGTCTTACCCAAAGTCAGAGAAGTCCTGCATGTCGCAAGCGTGGAGATGCAGCTAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000189871.7
CDS GCA 72 bp TCTTGGACAGGCTCTGAGTTGATGTCCTGGAGTCTCTaGGTTTCTTCTCAAAGCTTTTGTCACTGGCCAGCC +
Preference number: 6 (lower is better)
Translates to: SWTGSELMSWSL*VSSQSFCHWPA
Trigger: GGCTGGCCAGTGACAAAAGCTTTGAGAAGAAACGCAGAGACTCCAGGACATCAACTCAGAGCCTGTCCAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS TCA 72 bp GAGTGTGCACAGGTGTGGACTGACATTGATTCTTCCTaGAGGATGGTCAAAAAGGACACTGCAGCCGTTAGC +
Preference number: 6 (lower is better)
Translates to: ECAQVWTDIDSS*RMVKKDTAAVS
Trigger: GCTAACGGCTGCAGTGTCCTTTTTGACCATCCTTCAGGAAGAATCAATGTCAGTCCACACCTGTGCACACTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS TCA 72 bp TCAAAGCTTTTGTCACTGGCCAGCCTCCCGTCACTCTaGTGCTTCTCCTTCTCCAGCTGTTCCATTTCCAAA +
Preference number: 6 (lower is better)
Translates to: SKLLSLASLPSL*CFSFSSCSISK
Trigger: TTTGGAAATGGAACAGCTGGAGAAGGAGAAGCATCAGAGTGACGGGAGGCTGGCCAGTGACAAAAGCTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS TCA 72 bp CCAGGAACAGAAATGGGCAAGTTCTTGGACAGGCTCTaGGTTGATGTCCTGGAGTCTCTGCGTTTCTTCTCA +
Preference number: 6 (lower is better)
Translates to: PGTEMGKFLDRL*VDVLESLRFFS
Trigger: TGAGAAGAAACGCAGAGACTCCAGGACATCAACTCAGAGCCTGTCCAAGAACTTGCCCATTTCTGTTCCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS GCA 72 bp CGGGAAGCACCACATTCTTTGTCAGTTCTGCCCCAATaGCCTGAGCTATGTTTTCTAACTGGCGACACATAC +
Preference number: 6 (lower is better)
Translates to: REAPHSLSVLPQ*PELCFLTGDTY
Trigger: GTATGTGTCGCCAGTTAGAAAACATAGCTCAGGGCATTGGGGCAGAACTGACAAAGAATGTGGTGCTTCCCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
ENSMUST00000190664.2
CDS GCA 72 bp AGCTTTCTCACACACATTTCTAGCTGCTGGAGGAGATaGATGTCTGCAGGAATCTTCAGCGCAGACTTCACC +
Preference number: 6 (lower is better)
Translates to: SFLTHISSCWRR*MSAGIFSADFT
Trigger: GGTGAAGTCTGCGCTGAAGATTCCTGCAGACATGCATCTCCTCCAGCAGCTAGAAATGTGTGTGAGAAAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
ENSMUST00000190151.2
CDS CAA 72 bp ATCTCCACGCTTGCGACATGCAGGACTTCTCTGACTTaGGGTAAGACTCTCCGAAGTGTCTCAGTAGGATTC +
Preference number: 6 (lower is better)
Translates to: ISTLATCRTSLT*GKTLRSVSVGF
Trigger: GAATCCTACTGAGACACTTCGGAGAGTCTTACCCAAAGTCAGAGAAGTCCTGCATGTCGCAAGCGTGGAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000189871.7
CDS CAA 72 bp ACTAAACGCGACTGGACGGTTTGGGAAAGCTGTGCCTaGGAAACAAGTGGATTGAGAATCTCATGCCTCAGG +
Preference number: 6 (lower is better)
Translates to: TKRDWTVWESCA*ETSGLRISCLR
Trigger: CCTGAGGCATGAGATTCTCAATCCACTTGTTTCCAAGGCACAGCTTTCCCAAACCGTCCAGTCGCGTTTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS CCA 72 bp CACAGGTGTGGACTGACATTGATTCTTCCTGAAGGATaGTCAAAAAGGACACTGCAGCCGTTAGCTGCATCT +
Preference number: 6 (lower is better)
Translates to: HRCGLTLILPEG*SKRTLQPLAAS
Trigger: AGATGCAGCTAACGGCTGCAGTGTCCTTTTTGACCATCCTTCAGGAAGAATCAATGTCAGTCCACACCTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000189871.7
CDS CCA 72 bp CTGGACGGTTTGGGAAAGCTGTGCCTTGGAAACAAGTaGATTGAGAATCTCATGCCTCAGGGTTTCTTTTGG +
Preference number: 6 (lower is better)
Translates to: LDGLGKLCLGNK*IENLMPQGFFW
Trigger: CCAAAAGAAACCCTGAGGCATGAGATTCTCAATCCACTTGTTTCCAAGGCACAGCTTTCCCAAACCGTCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS CCA 72 bp GCATGTCTGCAGGAATCTTCAGCGCAGACTTCACCTTaGGCAGCAGGTAGCAAAGTTTCATTCTCACATTTG +
Preference number: 6 (lower is better)
Translates to: ACLQESSAQTSP*AAGSKVSFSHL
Trigger: CAAATGTGAGAATGAAACTTTGCTACCTGCTGCCCAAGGTGAAGTCTGCGCTGAAGATTCCTGCAGACATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS TCA 72 bp AACAGAAATGGGCAAGTTCTTGGACAGGCTCTGAGTTaGTGTCCTGGAGTCTCTGCGTTTCTTCTCAAAGCT +
Preference number: 6 (lower is better)
Translates to: NRNGQVLGQALS*CPGVSAFLLKA
Trigger: AGCTTTGAGAAGAAACGCAGAGACTCCAGGACATCAACTCAGAGCCTGTCCAAGAACTTGCCCATTTCTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS CCA 72 bp CCGAAGTGTCTCAGTAGGATTCTGTCGCATCAAAAATaGAAGGTTTGCAATCACACTGGCTCCTTGGACATC +
Preference number: 6 (lower is better)
Translates to: PKCLSRILSHQK*KVCNHTGSLDI
Trigger: GATGTCCAAGGAGCCAGTGTGATTGCAAACCTTCCATTTTTGATGCGACAGAATCCTACTGAGACACTTCGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000189871.7
CDS CCA 72 bp GGAATTTCATGCAGAGAGAAGAGGGAACCTGAGTTCTaGGAAGCAGAGGGGGATTTTTCTCTTGTTGATGCA +
Preference number: 6 (lower is better)
Translates to: GISCREKREPEF*EAEGDFSLVDA
Trigger: TGCATCAACAAGAGAAAAATCCCCCTCTGCTTCCCAGAACTCAGGTTCCCTCTTCTCTCTGCATGAAATTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000189871.7
CDS CAA 90 bp TTACAGCTAACTAAACGCGACTGGACGGTTTGGGAAAGCTGTGCCTaGGAAACAAGTGGATTGAGAATCTCATGCCTCAGGGTTTCTTTT +
Preference number: 6 (lower is better)
Translates to: LQLTKRDWTVWESCA*ETSGLRISCLRVSF
Trigger: AAAAGAAACCCTGAGGCATGAGATTCTCAATCCACTTGTTTCCAAGGCACAGCTTTCCCAAACCGTCCAGTCGCGTTTAGTTAGCTGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS TCA 72 bp CCTTGGGCAGCAGGTAGCAAAGTTTCATTCGAGTTATaGAGCCAACTGAGAAGTCCATCAACAGACAACTCA +
Preference number: 6 (lower is better)
Translates to: PWAAGSKVSFEL*SQLRSPSTDNS
Trigger: TGAGTTGTCTGTTGATGGACTTCTCAGTTGGCTTCATAACTCGAATGAAACTTTGCTACCTGCTGCCCAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000190151.2
CDS CAA 72 bp CATCAAAAATGGAAGGTTTGCAATCACACTGGCTCCTaGGACATCTTGACCAGCACTGAGCAGATAAACAGC +
Preference number: 6 (lower is better)
Translates to: HQKWKVCNHTGS*DILTSTEQINS
Trigger: GCTGTTTATCTGCTCAGTGCTGGTCAAGATGTCCAAGGAGCCAGTGTGATTGCAAACCTTCCATTTTTGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000189871.7
CDS GCA 72 bp AGCTGTGCCTTGGAAACAAGTGGATTGAGAATCTCATaGCTCAGGGTTTCTTTTGGCAATAATTCTACTGCG +
Preference number: 6 (lower is better)
Translates to: SCALETSGLRIS*LRVSFGNNSTA
Trigger: CGCAGTAGAATTATTGCCAAAAGAAACCCTGAGGCATGAGATTCTCAATCCACTTGTTTCCAAGGCACAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS GCA 72 bp GCCTCTGCTCTTGTTTACGATTATATCGTAGAAAAATaGATAGAGTTCGTGCAGCTGCCCTTTGGACAGGTA +
Preference number: 6 (lower is better)
Translates to: ASALVYDYIVEK*IEFVQLPFGQV
Trigger: TACCTGTCCAAAGGGCAGCTGCACGAACTCTATGCATTTTTCTACGATATAATCGTAAACAAGAGCAGAGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS TCA 72 bp CATGGCCGGAAAGTTGTAAGCACAGTTCTTTCGTACTaGAGTATATTTCTTCTCCTGCTCTACGATTTGGGA +
Preference number: 6 (lower is better)
Translates to: HGRKVVSTVLSY*SIFLLLLYDLG
Trigger: TCCCAAATCGTAGAGCAGGAGAAGAAATATACTTCAGTACGAAAGAACTGTGCTTACAACTTTCCGGCCATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
ENSMUST00000190664.2
CDS CCA 72 bp AAAATTTTACAGCTAACTAAACGCGACTGGACGGTTTaGGAAAGCTGTGCCTTGGAAACAAGTGGATTGAGA +
Preference number: 6 (lower is better)
Translates to: KILQLTKRDWTV*ESCALETSGLR
Trigger: TCTCAATCCACTTGTTTCCAAGGCACAGCTTTCCCAAACCGTCCAGTCGCGTTTAGTTAGCTGTAAAATTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS CCA 72 bp CGTAGAAAAATGCATAGAGTTCGTGCAGCTGCCCTTTaGACAGGTAAGACATTATTTGTCATCATGATGGTG +
Preference number: 6 (lower is better)
Translates to: RRKMHRVRAAAL*TGKTLFVIMMV
Trigger: CACCATCATGATGACAAATAATGTCTTACCTGTCCAAAGGGCAGCTGCACGAACTCTATGCATTTTTCTACG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS TCA 72 bp TTTGTAAGAAACGGTAATAAATCTGGTCACTCGATATaGTATGAGGCAGACAGGTGTACTTCTGCAGCAGCT +
Preference number: 6 (lower is better)
Translates to: FVRNGNKSGHSI*YEADRCTSAAA
Trigger: AGCTGCTGCAGAAGTACACCTGTCTGCCTCATATCATATCGAGTGACCAGATTTATTACCGTTTCTTACAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS CCA 72 bp CGTACTGAAGTATATTTCTTCTCCTGCTCTACGATTTaGGATGGAATCTGGCTTTCATTGTGGCCATTTTCT +
Preference number: 6 (lower is better)
Translates to: RTEVYFFSCSTI*DGIWLSLWPFS
Trigger: AGAAAATGGCCACAATGAAAGCCAGATTCCATCCCAAATCGTAGAGCAGGAGAAGAAATATACTTCAGTACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
ENSMUST00000190664.2
CDS CAA 90 bp CTCTACGATTTGGGATGGAATCTGGCTTTCATTGTGGCCATTTTCTaGTTGCAAACCCAGTGTACAAAGTTTCTTATAAAACTCCAAAAA +
Preference number: 6 (lower is better)
Translates to: LYDLGWNLAFIVAIF*LQTQCTKFLIKLQK
Trigger: TTTTTGGAGTTTTATAAGAAACTTTGTACACTGGGTTTGCAACAAGAAAATGGCCACAATGAAAGCCAGATTCCATCCCAAATCGTAGAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
ENSMUST00000190664.2
CDS TCA 72 bp ACAAGATCGAACTTCATATTCCACATCTTGACAGAGTaGTTTTACCAGGGGAAGTATTTCTCTCTTAATGCT +
Preference number: 6 (lower is better)
Translates to: TRSNFIFHILTE*FYQGKYFSLNA
Trigger: AGCATTAAGAGAGAAATACTTCCCCTGGTAAAATCACTCTGTCAAGATGTGGAATATGAAGTTCGATCTTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS TCA 72 bp TTTTCACAGAACGATTTCACTAAGGGAAGTATAGTTTaGCTTCTGTCATCTGTATCGAACATGTCAAGCATG +
Preference number: 6 (lower is better)
Translates to: FSQNDFTKGSIV*LLSSVSNMSSM
Trigger: CATGCTTGACATGTTCGATACAGATGACAGAAGTCAAACTATACTTCCCTTAGTGAAATCGTTCTGTGAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
ENSMUST00000190664.2
CDS CAA 72 bp TTGGGATGGAATCTGGCTTTCATTGTGGCCATTTTCTaGTTGCAAACCCAGTGTACAAAGTTTCTTATAAAA +
Preference number: 6 (lower is better)
Translates to: LGWNLAFIVAIF*LQTQCTKFLIK
Trigger: TTTTATAAGAAACTTTGTACACTGGGTTTGCAACAAGAAAATGGCCACAATGAAAGCCAGATTCCATCCCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
ENSMUST00000190664.2
CDS TCA 72 bp TTTTTCCTTGGCCCAACTGTTCAATTAGTTTTTGAATaGCTTCATGCCTCTGCTCTTGTTTACGATTATATC +
Preference number: 6 (lower is better)
Translates to: FFLGPTVQLVFE*LHASALVYDYI
Trigger: GATATAATCGTAAACAAGAGCAGAGGCATGAAGTCATTCAAAAACTAATTGAACAGTTGGGCCAAGGAAAAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7
ENSMUST00000189871.7
CDS CAA 72 bp TTATTAAAAGATTGGCTTCGAGTCAATTTGGATTTCTaGATTTCTTTGCTTGTTGATGCAGTGCTAGAGGAG +
Preference number: 6 (lower is better)
Translates to: LLKDWLRVNLDF*ISLLVDAVLEE
Trigger: CTCCTCTAGCACTGCATCAACAAGCAAAGAAATCAAGAAATCCAAATTGACTCGAAGCCAATCTTTTAATAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021631.12
ENSMUST00000187155.7