RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PPP4R2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000052144

Ensembl transcript IDs: ENSMUST00000063854.7, ENSMUST00000203580.2, ENSMUST00000203940.3

Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GAAACTCCTGCTCAAAGGCAGCCTGAAACACTACCCGGAATAGTTTaGTGTAGCTCTGCAGGTACATTTCCACCCGCGATACCGGCTTCA +
Preference number: 1 (lower is better)
Translates to: ETPAQRQPETLPGIV*CSSAGTFPPAIPAS
Trigger: TGAAGCCGGTATCGCGGGTGGAAATGTACCTGCAGAGCTACAGCAAACTATTCCGGGTAGTGTTTCAGGCTGCCTTTGAGCAGGAGTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR CCA 90 bp AAAGAGCCAGCTACTTCAGCCACGGGACGGCTTGACCCTCCCTCTTaGGTCTCATTCTGTCACTCACAAAGGACTCAGTGCTCATTAGAA +
Preference number: 1 (lower is better)
Translates to: KEPATSATGRLDPPS*VSFCHSQRTQCSLE
Trigger: TTCTAATGAGCACTGAGTCCTTTGTGAGTGACAGAATGAGACCCAAGAGGGAGGGTCAAGCCGTCCCGTGGCTGAAGTAGCTGGCTCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR GCA 90 bp AGTGCATCTAACACCACGTGTGGAAATGGACTTCCAAGGGACCAATaGATCCACAGTCTGAACATGGCCTCACACGGTGATGAATATTAC +
Preference number: 1 (lower is better)
Translates to: SASNTTCGNGLPRDQ*IHSLNMASHGDEYY
Trigger: GTAATATTCATCACCGTGTGAGGCCATGTTCAGACTGTGGATGCATTGGTCCCTTGGAAGTCCATTTCCACACGTGGTGTTAGATGCACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR CCA 90 bp TTCAGAAAAGCAACCGAATGTTATGGGACCTGTGGGCTCTTGAGATaGTTTCATGTCAGGCTCCGAAGCACTCATTCTACAGACAGCAAG +
Preference number: 1 (lower is better)
Translates to: FRKATECYGTCGLLR*FHVRLRSTHSTDSK
Trigger: CTTGCTGTCTGTAGAATGAGTGCTTCGGAGCCTGACATGAAACCATCTCAAGAGCCCACAGGTCCCATAACATTCGGTTGCTTTTCTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
3UTR GCA 90 bp ATCCACAGTCTGAACATGGCCTCACACGGTGATGAATATTACAACTaGCCTAGAGACCCTTCACCAGTATCCTACGTGTATCTGTATAAA +
Preference number: 1 (lower is better)
Translates to: IHSLNMASHGDEYYN*PRDPSPVSYVYLYK
Trigger: TTTATACAGATACACGTAGGATACTGGTGAAGGGTCTCTAGGGCAGTTGTAATATTCATCACCGTGTGAGGCCATGTTCAGACTGTGGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR GCA 90 bp CGCGATACCGGCTTCACATTCAATCCTCGCAGTAGCTCTAGGCTCTaGCCAGTACCGTTTAAGCTAGTACATTACATACATTATTTGAAA +
Preference number: 1 (lower is better)
Translates to: RDTGFTFNPRSSSRL*PVPFKLVHYIHYLK
Trigger: TTTCAAATAATGTATGTAATGTACTAGCTTAAACGGTACTGGGCAGAGCCTAGAGCTACTGCGAGGATTGAATGTGAAGCCGGTATCGCG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR GCA 90 bp AAATCGACAGTTTTACTAGACAGATTCATAAATCTACTGTCCAGCTaGTGTGAACCTGAAGGTCATCAGTCAGTAGCATATTACTTTATG +
Preference number: 1 (lower is better)
Translates to: KSTVLLDRFINLLSS*CEPEGHQSVAYYFM
Trigger: CATAAAGTAATATGCTACTGACTGATGACCTTCAGGTTCACAGCAGCTGGACAGTAGATTTATGAATCTGTCTAGTAAAACTGTCGATTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR CCA 90 bp TTGCTCTGGCTACATATGGGAAAGACCGGAGTTGTGACAATTAAGTaGATTAAGTTTACTAATCCTCAAAATATATTTTCACTACTCACT +
Preference number: 1 (lower is better)
Translates to: LLWLHMGKTGVVTIK*IKFTNPQNIFSLLT
Trigger: AGTGAGTAGTGAAAATATATTTTGAGGATTAGTAAACTTAATCCACTTAATTGTCACAACTCCGGTCTTTCCCATATGTAGCCAGAGCAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR-3UTR TCA 90 bp ACTCCTGCTCAAAGGCAGCCTGAAACACTACCCGGAATAGTTTGCTGTAGCTCTGGACCTGTGGGCTCTTaGGATGGTTTCATGTCAGGC +
Preference number: 2 (lower is better)
Translates to: TPAQRQPETLPGIVCCSSGPVGS*DGFMSG
Trigger: GCCTGACATGAAACCATCTCAAGAGCCCACAGGTCC...AGAGCTACAGCAAACTATTCCGGGTAGTGTTTCAGGCTGCCTTTGAGCAGGAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR-3UTR GCA 90 bp CCACGGGACGGCTTGACCCTCCCTCTTGGGTCTCATTCTGTCACTCACAAAGGAGATGAATATTACAACTaGCCTAGAGACCCTTCACCA +
Preference number: 2 (lower is better)
Translates to: PRDGLTLPLGSHSVTHKGDEYYN*PRDPSP
Trigger: TGGTGAAGGGTCTCTAGGGCAGTTGTAATATTCATC...TCCTTTGTGAGTGACAGAATGAGACCCAAGAGGGAGGGTCAAGCCGTCCCGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR-3UTR GCA 90 bp ACATTCAATCCTCGCAGTAGCTCTAGGCTCTGCCCAGTACCGTTTAAGCTAGTACTTCCAAGGGACCAATaGATCCACAGTCTGAACATG +
Preference number: 2 (lower is better)
Translates to: TFNPRSSSRLCPVPFKLVLPRDQ*IHSLNM
Trigger: CATGTTCAGACTGTGGATGCATTGGTCCCTTGGAAG...TACTAGCTTAAACGGTACTGGGCAGAGCCTAGAGCTACTGCGAGGATTGAATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR-3UTR GCA 90 bp GGTGGCAAAACCATGTCATGTGTATTCTGTCAGCACCATCAGCACTGCCCAGATTCTAAGCAGTCAAAATaGAAACCTTGTGGTTTCCCT +
Preference number: 2 (lower is better)
Translates to: GGKTMSCVFCQHHQHCPDSKQSK*KPCGFP
Trigger: AGGGAAACCACAAGGTTTGCATTTTGACTGCTTAGA...ATCTGGGCAGTGCTGATGGTGCTGACAGAATACACATGACATGGTTTTGCCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR CAA 90 bp AGTGCCATGCGGCATATAGGATTATTCAGAAAGACAGATGTGATGTaGACAGTGTTCAGAAAAGCAACCGAATGTTATGGGACCTGTGGG +
Preference number: 2 (lower is better)
Translates to: SAMRHIGLFRKTDVM*TVFRKATECYGTCG
Trigger: CCCACAGGTCCCATAACATTCGGTTGCTTTTCTGAACACTGTCAACATCACATCTGTCTTTCTGAATAATCCTATATGCCGCATGGCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
3UTR-3UTR GCA 90 bp ACTCCTGCTCAAAGGCAGCCTGAAACACTACCCGGAATAGTTTGCTGTAGCTCTAAATACACTTCCCCTTaGAAAGATAGCAATTGCAAG +
Preference number: 2 (lower is better)
Translates to: TPAQRQPETLPGIVCCSSKYTSP*KDSNCK
Trigger: CTTGCAATTGCTATCTTTGCAAGGGGAAGTGTATTT...AGAGCTACAGCAAACTATTCCGGGTAGTGTTTCAGGCTGCCTTTGAGCAGGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR-3UTR CCA 90 bp TGGCAAAACCATGTCATGTGTATTCTGTCAGCACCATCAGCACTGCCCAGATCTATGTTATACAAATCATaGTGGTTTCTGTGCACCCCT +
Preference number: 2 (lower is better)
Translates to: WQNHVMCILSAPSALPRSMLYKS*WFLCTP
Trigger: AGGGGTGCACAGAAACCACCATGATTTGTATAACAT...AGATCTGGGCAGTGCTGATGGTGCTGACAGAATACACATGACATGGTTTTGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR-3UTR TCA 90 bp TGGCAAAACCATGTCATGTGTATTCTGTCAGCACCATCAGCACTGCCCAGATCTACAGACCTCTATTCATaGTGCGAAATCTTCAACTTT +
Preference number: 2 (lower is better)
Translates to: WQNHVMCILSAPSALPRSTDLYS*CEIFNF
Trigger: AAAGTTGAAGATTTCGCATCATGAATAGAGGTCTGT...AGATCTGGGCAGTGCTGATGGTGCTGACAGAATACACATGACATGGTTTTGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR-3UTR TCA 90 bp GTTCAGAAAAGCAACCGAATGTTATGGGACCTGTGGGCTCTTGAGATGGTTTCACTTTCCATAAATAAATaGAGTCTTGTTGTCTCAGGC +
Preference number: 2 (lower is better)
Translates to: VQKSNRMLWDLWALEMVSLSINK*SLVVSG
Trigger: GCCTGAGACAACAAGACTTCATTTATTTATGGAAAG...TGAAACCATCTCAAGAGCCCACAGGTCCCATAACATTCGGTTGCTTTTCTGAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
3UTR-3UTR TCA 90 bp TGTGATGTTGACAGTGTTCAGAAAAGCAACCGAATGTTATGGGACCTGTGGGCTCTTTCCATAAATAAATaGAGTCTTGTTGTCTCAGGC +
Preference number: 2 (lower is better)
Translates to: CDVDSVQKSNRMLWDLWALSINK*SLVVSG
Trigger: GCCTGAGACAACAAGACTTCATTTATTTATGGAAAG...AGCCCACAGGTCCCATAACATTCGGTTGCTTTTCTGAACACTGTCAACATCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
3UTR-3UTR GCA 90 bp AGTAGCTCTAGGCTCTGCCCAGTACCGTTTAAGCTAGTACATTACATACATTATTCACAAAGGACTCAGTaGTCATTAGAACTGACACTT +
Preference number: 2 (lower is better)
Translates to: SSSRLCPVPFKLVHYIHYSQRTQ*SLELTL
Trigger: AAGTGTCAGTTCTAATGAGCACTGAGTCCTTTGTGA...ATAATGTATGTAATGTACTAGCTTAAACGGTACTGGGCAGAGCCTAGAGCTACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR-3UTR CAA 90 bp CCACGGGACGGCTTGACCCTCCCTCTTGGGTCTCATTCTGTCACTCACAAAGGACAGGGAAGTTGCAGCTaGCATGACTTTAAATATGTG +
Preference number: 3 (lower is better)
Translates to: PRDGLTLPLGSHSVTHKGQGSCS*HDFKYV
Trigger: CACATATTTAAAGTCATGCAAGCTGCAACTTCCCTG...TCCTTTGTGAGTGACAGAATGAGACCCAAGAGGGAGGGTCAAGCCGTCCCGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR GCA 72 bp AACACCACGTGTGGAAATGGACTTCCAAGGGACCAATaGATCCACAGTCTGAACATGGCCTCACACGGTGAT +
Preference number: 3 (lower is better)
Translates to: NTTCGNGLPRDQ*IHSLNMASHGD
Trigger: ATCACCGTGTGAGGCCATGTTCAGACTGTGGATGCATTGGTCCCTTGGAAGTCCATTTCCACACGTGGTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR CCA 72 bp GCAACCGAATGTTATGGGACCTGTGGGCTCTTGAGATaGTTTCATGTCAGGCTCCGAAGCACTCATTCTACA +
Preference number: 3 (lower is better)
Translates to: ATECYGTCGLLR*FHVRLRSTHST
Trigger: TGTAGAATGAGTGCTTCGGAGCCTGACATGAAACCATCTCAAGAGCCCACAGGTCCCATAACATTCGGTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
3UTR-3UTR CAA 90 bp GGTGGCAAAACCATGTCATGTGTATTCTGTCAGCACCATCAGCACTGCCCAGATGTCAAAATGCAAACCTaGTGGTTTCCCTCTGATCAC +
Preference number: 3 (lower is better)
Translates to: GGKTMSCVFCQHHQHCPDVKMQT*WFPSDH
Trigger: GTGATCAGAGGGAAACCACAAGGTTTGCATTTTGAC...ATCTGGGCAGTGCTGATGGTGCTGACAGAATACACATGACATGGTTTTGCCACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR GCA 72 bp CTGAACATGGCCTCACACGGTGATGAATATTACAACTaGCCTAGAGACCCTTCACCAGTATCCTACGTGTAT +
Preference number: 3 (lower is better)
Translates to: LNMASHGDEYYN*PRDPSPVSYVY
Trigger: ATACACGTAGGATACTGGTGAAGGGTCTCTAGGGCAGTTGTAATATTCATCACCGTGTGAGGCCATGTTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR-3UTR CAA 90 bp ACTCCTGCTCAAAGGCAGCCTGAAACACTACCCGGAATAGTTTGCTGTAGCTCTAGTGTGAGAAACTGTTaGTATCAGCTATTAGGTCCA +
Preference number: 3 (lower is better)
Translates to: TPAQRQPETLPGIVCCSSSVRNC*YQLLGP
Trigger: TGGACCTAATAGCTGATACAAACAGTTTCTCACACT...AGAGCTACAGCAAACTATTCCGGGTAGTGTTTCAGGCTGCCTTTGAGCAGGAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR TCA 72 bp GAAATGGACTTCCAAGGGACCAATGCATCCACAGTCTaGACATGGCCTCACACGGTGATGAATATTACAACT +
Preference number: 3 (lower is better)
Translates to: EMDFQGTNASTV*TWPHTVMNITT
Trigger: AGTTGTAATATTCATCACCGTGTGAGGCCATGTTCAGACTGTGGATGCATTGGTCCCTTGGAAGTCCATTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR-3UTR CAA 90 bp AGTAGCTCTAGGCTCTGCCCAGTACCGTTTAAGCTAGTACATTACATACATTATTTGACTTTCACCCCTTaGGGTACAGTAAATCGACAG +
Preference number: 3 (lower is better)
Translates to: SSSRLCPVPFKLVHYIHYLTFTP*GTVNRQ
Trigger: CTGTCGATTTACTGTACCCAAAGGGGTGAAAGTCAA...ATAATGTATGTAATGTACTAGCTTAAACGGTACTGGGCAGAGCCTAGAGCTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR CCA 72 bp AATAAAACACAAGGATCTCAATGCTTTAAGACTTTCTaGGGCAGGGTTTCTGGAATAGCTTTCGAAAGCCAG +
Preference number: 3 (lower is better)
Translates to: NKTQGSQCFKTF*GRVSGIAFESQ
Trigger: CTGGCTTTCGAAAGCTATTCCAGAAACCCTGCCCCAGAAAGTCTTAAAGCATTGAGATCCTTGTGTTTTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR GCA 72 bp GTTTTACTAGACAGATTCATAAATCTACTGTCCAGCTaGTGTGAACCTGAAGGTCATCAGTCAGTAGCATAT +
Preference number: 3 (lower is better)
Translates to: VLLDRFINLLSS*CEPEGHQSVAY
Trigger: ATATGCTACTGACTGATGACCTTCAGGTTCACAGCAGCTGGACAGTAGATTTATGAATCTGTCTAGTAAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
3UTR TCA 72 bp TATCAAAGGTCACAGGAGCTTAGAGAACAGGTTTATTaGCAACAACCTCATAAATATCCTAAGGAAAATCTC +
Preference number: 3 (lower is better)
Translates to: YQRSQELREQVY*QQPHKYPKENL
Trigger: GAGATTTTCCTTAGGATATTTATGAGGTTGTTGTCAATAAACCTGTTCTCTAAGCTCCTGTGACCTTTGATA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
CDS-3UTR TCA 90 bp GAATGTTATGGGACCTGTGGGCTCTTGAGATGGTTTCATGTCAGGCTCCGAAGCGTCAGAGCCACTCCTTaGGGCCCCTGCACTGTCACT +
Preference number: 4 (lower is better)
Translates to: ECYGTCGLLRWFHVRLRSVRATP*GPCTVT
Trigger: AGTGACAGTGCAGGGGCCTCAAGGAGTGGCTCTGAC...GCTTCGGAGCCTGACATGAAACCATCTCAAGAGCCCACAGGTCCCATAACATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
CDS-3UTR TCA 90 bp GAATGTTATGGGACCTGTGGGCTCTTGAGATGGTTTCATGTCAGGCTCCGAAGCCCAGAGCCTTCCATCTaGTGGCTCTCCTCTGAAGTC +
Preference number: 4 (lower is better)
Translates to: ECYGTCGLLRWFHVRLRSPEPSI*WLSSEV
Trigger: GACTTCAGAGGAGAGCCATCAGATGGAAGGCTCTGG...GCTTCGGAGCCTGACATGAAACCATCTCAAGAGCCCACAGGTCCCATAACATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
CDS-3UTR GCA 90 bp CCACGGGACGGCTTGACCCTCCCTCTTGGGTCTCATTCTGTCACTCACAAAGGAGCAGCTCAGAATCTTTaGTATCTGTGCTCTCAGGCA +
Preference number: 4 (lower is better)
Translates to: PRDGLTLPLGSHSVTHKGAAQNL*YLCSQA
Trigger: TGCCTGAGAGCACAGATAGCAAAGATTCTGAGCTGC...TCCTTTGTGAGTGACAGAATGAGACCCAAGAGGGAGGGTCAAGCCGTCCCGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
CDS-3UTR TCA 90 bp ACTCCTGCTCAAAGGCAGCCTGAAACACTACCCGGAATAGTTTGCTGTAGCTCTCCAGAGCCTTCCATCTaGTGGCTCTCCTCTGAAGTC +
Preference number: 4 (lower is better)
Translates to: TPAQRQPETLPGIVCCSSPEPSI*WLSSEV
Trigger: GACTTCAGAGGAGAGCCATCAGATGGAAGGCTCTGG...AGAGCTACAGCAAACTATTCCGGGTAGTGTTTCAGGCTGCCTTTGAGCAGGAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
CDS-3UTR TCA 90 bp GTTCAGAAAAGCAACCGAATGTTATGGGACCTGTGGGCTCTTGAGATGGTTTCAGTCAGAGCCACTCCTTaGGGCCCCTGCACTGTCACT +
Preference number: 4 (lower is better)
Translates to: VQKSNRMLWDLWALEMVSVRATP*GPCTVT
Trigger: AGTGACAGTGCAGGGGCCTCAAGGAGTGGCTCTGAC...TGAAACCATCTCAAGAGCCCACAGGTCCCATAACATTCGGTTGCTTTTCTGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
CDS-3UTR TCA 90 bp ACCAAACCAAACAAGAAAATCAGCACTAAGCGGGACCCAGAGGAGCCGTACTCACATGGACGACGGCACTaGCACACTCTCTCCAGTCTT +
Preference number: 4 (lower is better)
Translates to: TKPNKKISTKRDPEEPYSHGRRH*HTLSSL
Trigger: AAGACTGGAGAGAGTGTGTCAGTGCCGTCGTCCATG...TGAGTACGGCTCCTCTGGGTCCCGCTTAGTGCTGATTTTCTTGTTTGGTTTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
CDS-3UTR TCA 90 bp GAATGTTATGGGACCTGTGGGCTCTTGAGATGGTTTCATGTCAGGCTCCGAAGCACTGTCACTCCTTTCTaGAGTGGAGTCTGTCTGAGC +
Preference number: 4 (lower is better)
Translates to: ECYGTCGLLRWFHVRLRSTVTPF*SGVCLS
Trigger: GCTCAGACAGACTCCACTTCAGAAAGGAGTGACAGT...GCTTCGGAGCCTGACATGAAACCATCTCAAGAGCCCACAGGTCCCATAACATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
CDS-3UTR GCA 90 bp GTTCAGAAAAGCAACCGAATGTTATGGGACCTGTGGGCTCTTGAGATGGTTTCAGTCAGGAGGGGGAGCTaGTGTTTCCGTTTCCTCTGC +
Preference number: 4 (lower is better)
Translates to: VQKSNRMLWDLWALEMVSVRRGS*CFRFLC
Trigger: GCAGAGGAAACGGAAACAGCAGCTCCCCCTCCTGAC...TGAAACCATCTCAAGAGCCCACAGGTCCCATAACATTCGGTTGCTTTTCTGAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
CDS-3UTR CCA 90 bp GAATGTTATGGGACCTGTGGGCTCTTGAGATGGTTTCATGTCAGGCTCCGAAGCCACTCCTTTCTGAAGTaGAGTCTGTCTGAGCTGGAG +
Preference number: 4 (lower is better)
Translates to: ECYGTCGLLRWFHVRLRSHSFLK*SLSELE
Trigger: CTCCAGCTCAGACAGACTCCACTTCAGAAAGGAGTG...GCTTCGGAGCCTGACATGAAACCATCTCAAGAGCCCACAGGTCCCATAACATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
3UTR CAA 72 bp TCAGCACCATCAGCACTGCCCAGATCTGAGTTAGGCTaGGGAAAGGAGAACCCGGTTAGGAATCTGTTCAAC +
Preference number: 4 (lower is better)
Translates to: SAPSALPRSELG*GKENPVRNLFN
Trigger: GTTGAACAGATTCCTAACCGGGTTCTCCTTTCCCAAGCCTAACTCAGATCTGGGCAGTGCTGATGGTGCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
CDS-3UTR CCA 90 bp TGTGATGTTGACAGTGTTCAGAAAAGCAACCGAATGTTATGGGACCTGTGGGCTGGAGTCTGTCTGAGCTaGAGACACACCAGAGCCTTC +
Preference number: 4 (lower is better)
Translates to: CDVDSVQKSNRMLWDLWAGVCLS*RHTRAF
Trigger: GAAGGCTCTGGTGTGTCTCCAGCTCAGACAGACTCC...AGCCCACAGGTCCCATAACATTCGGTTGCTTTTCTGAACACTGTCAACATCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
CDS-3UTR TCA 90 bp ACCAAACCAAACAAGAAAATCAGCACTAAGCGGGACCCAGAGGAGCCGTACTCACTGATGGCTCTCCTCTaGAGTCTCTTCATTCACAGT +
Preference number: 4 (lower is better)
Translates to: TKPNKKISTKRDPEEPYSLMALL*SLFIHS
Trigger: ACTGTGAATGAAGAGACTTCAGAGGAGAGCCATCAG...TGAGTACGGCTCCTCTGGGTCCCGCTTAGTGCTGATTTTCTTGTTTGGTTTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
CDS-3UTR CCA 90 bp GAATGTTATGGGACCTGTGGGCTCTTGAGATGGTTTCATGTCAGGCTCCGAAGCGCTGAAGAATCACTGTaGCCTTTCTCTTCACTTAGC +
Preference number: 4 (lower is better)
Translates to: ECYGTCGLLRWFHVRLRSAEESL*PFSSLS
Trigger: GCTAAGTGAAGAGAAAGGCCACAGTGATTCTTCAGC...GCTTCGGAGCCTGACATGAAACCATCTCAAGAGCCCACAGGTCCCATAACATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
CDS-3UTR TCA 90 bp TGTGATGTTGACAGTGTTCAGAAAAGCAACCGAATGTTATGGGACCTGTGGGCTTGTTGTCAAGGGGGCTaGCAAAGAAAGCTTTGGTCG +
Preference number: 4 (lower is better)
Translates to: CDVDSVQKSNRMLWDLWACCQGG*QRKLWS
Trigger: CGACCAAAGCTTTCTTTGTCAGCCCCCTTGACAACA...AGCCCACAGGTCCCATAACATTCGGTTGCTTTTCTGAACACTGTCAACATCACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
CDS-3UTR TCA 90 bp GTTCAGAAAAGCAACCGAATGTTATGGGACCTGTGGGCTCTTGAGATGGTTTCAACTGTCACTCCTTTCTaGAGTGGAGTCTGTCTGAGC +
Preference number: 4 (lower is better)
Translates to: VQKSNRMLWDLWALEMVSTVTPF*SGVCLS
Trigger: GCTCAGACAGACTCCACTTCAGAAAGGAGTGACAGT...TGAAACCATCTCAAGAGCCCACAGGTCCCATAACATTCGGTTGCTTTTCTGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
CDS-3UTR GCA 90 bp ACACTTCCCCTTGCAAAGATAGCAATTGCAAGTTTACAAATAAAGCCACAGACCGTCAGGAGGGGGAGCTaGTGTTTCCGTTTCCTCTGC +
Preference number: 4 (lower is better)
Translates to: TLPLAKIAIASLQIKPQTVRRGS*CFRFLC
Trigger: GCAGAGGAAACGGAAACAGCAGCTCCCCCTCCTGAC...GGTCTGTGGCTTTATTTGTAAACTTGCAATTGCTATCTTTGCAAGGGGAAGTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
CDS-3UTR TCA 90 bp TGTGATGTTGACAGTGTTCAGAAAAGCAACCGAATGTTATGGGACCTGTGGGCTCTGATGGCTCTCCTCTaGAGTCTCTTCATTCACAGT +
Preference number: 4 (lower is better)
Translates to: CDVDSVQKSNRMLWDLWALMALL*SLFIHS
Trigger: ACTGTGAATGAAGAGACTTCAGAGGAGAGCCATCAG...AGCCCACAGGTCCCATAACATTCGGTTGCTTTTCTGAACACTGTCAACATCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
CDS-3UTR TCA 90 bp ACACTTCCCCTTGCAAAGATAGCAATTGCAAGTTTACAAATAAAGCCACAGACCCATGGACGACGGCACTaGCACACTCTCTCCAGTCTT +
Preference number: 4 (lower is better)
Translates to: TLPLAKIAIASLQIKPQTHGRRH*HTLSSL
Trigger: AAGACTGGAGAGAGTGTGTCAGTGCCGTCGTCCATG...GGTCTGTGGCTTTATTTGTAAACTTGCAATTGCTATCTTTGCAAGGGGAAGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
CDS-3UTR GCA 90 bp GGTGGCAAAACCATGTCATGTGTATTCTGTCAGCACCATCAGCACTGCCCAGATTTCTCTTCACTTAGCTaGAGCTCAGAATCTTTGCTA +
Preference number: 4 (lower is better)
Translates to: GGKTMSCVFCQHHQHCPDFSSLS*SSESLL
Trigger: TAGCAAAGATTCTGAGCTGCAGCTAAGTGAAGAGAA...ATCTGGGCAGTGCTGATGGTGCTGACAGAATACACATGACATGGTTTTGCCACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
CDS-3UTR CCA 90 bp AGTAGCTCTAGGCTCTGCCCAGTACCGTTTAAGCTAGTACATTACATACATTATCACTCCTTTCTGAAGTaGAGTCTGTCTGAGCTGGAG +
Preference number: 4 (lower is better)
Translates to: SSSRLCPVPFKLVHYIHYHSFLK*SLSELE
Trigger: CTCCAGCTCAGACAGACTCCACTTCAGAAAGGAGTG...ATAATGTATGTAATGTACTAGCTTAAACGGTACTGGGCAGAGCCTAGAGCTACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
CDS-3UTR GCA 90 bp GCGAAATCTTCAACTTTTAACCAACAGCAAACTGACTTGTTTGTAAATGGTCCAGTCATCTGTGACTTCTaGGGCTTCCTCACTCTCCAT +
Preference number: 4 (lower is better)
Translates to: AKSSTFNQQQTDLFVNGPVICDF*GFLTLH
Trigger: ATGGAGAGTGAGGAAGCCGCAGAAGTCACAGATGAC...TGGACCATTTACAAACAAGTCAGTTTGCTGTTGGTTAAAAGTTGAAGATTTCGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
CDS CCA 90 bp CAGAGCCACTCCTTGAGGCCCCTGCACTGTCACTCCTTTCTGAAGTaGAGTCTGTCTGAGCTGGAGACACACCAGAGCCTTCCATCTGAT +
Preference number: 5 (lower is better)
Translates to: QSHSLRPLHCHSFLK*SLSELETHQSLPSD
Trigger: ATCAGATGGAAGGCTCTGGTGTGTCTCCAGCTCAGACAGACTCCACTTCAGAAAGGAGTGACAGTGCAGGGGCCTCAAGGAGTGGCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
CDS-3UTR CAA 90 bp GAATGTTATGGGACCTGTGGGCTCTTGAGATGGTTTCATGTCAGGCTCCGAAGCAGTCAGAGCCACTCCTaGAGGCCCCTGCACTGTCAC +
Preference number: 5 (lower is better)
Translates to: ECYGTCGLLRWFHVRLRSSQSHS*RPLHCH
Trigger: GTGACAGTGCAGGGGCCTCAAGGAGTGGCTCTGACT...GCTTCGGAGCCTGACATGAAACCATCTCAAGAGCCCACAGGTCCCATAACATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
CDS-3UTR CAA 90 bp GGTGGCAAAACCATGTCATGTGTATTCTGTCAGCACCATCAGCACTGCCCAGATCGACTTTCTCTGTCCTaGTCAGGAGGGGGAGCTGCT +
Preference number: 5 (lower is better)
Translates to: GGKTMSCVFCQHHQHCPDRLSLS*SGGGAA
Trigger: AGCAGCTCCCCCTCCTGACAAGGACAGAGAAAGTCG...ATCTGGGCAGTGCTGATGGTGCTGACAGAATACACATGACATGGTTTTGCCACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
CDS-3UTR CAA 90 bp ACCAAACCAAACAAGAAAATCAGCACTAAGCGGGACCCAGAGGAGCCGTACTCACGACTTTCTCTGTCCTaGTCAGGAGGGGGAGCTGCT +
Preference number: 5 (lower is better)
Translates to: TKPNKKISTKRDPEEPYSRLSLS*SGGGAA
Trigger: AGCAGCTCCCCCTCCTGACAAGGACAGAGAAAGTCG...TGAGTACGGCTCCTCTGGGTCCCGCTTAGTGCTGATTTTCTTGTTTGGTTTGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
CDS-3UTR CAA 90 bp GTTCAGAAAAGCAACCGAATGTTATGGGACCTGTGGGCTCTTGAGATGGTTTCAAGTCAGAGCCACTCCTaGAGGCCCCTGCACTGTCAC +
Preference number: 5 (lower is better)
Translates to: VQKSNRMLWDLWALEMVSSQSHS*RPLHCH
Trigger: GTGACAGTGCAGGGGCCTCAAGGAGTGGCTCTGACT...TGAAACCATCTCAAGAGCCCACAGGTCCCATAACATTCGGTTGCTTTTCTGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
CDS CCA 90 bp TCCGTTTCCTCTGCTCTAACTGAAGAGACTTCACCAGACACCGTTTaGCTAGCTGTCTCTCTGACGTCACCTTCTTTGTCAAACTTCAGT +
Preference number: 5 (lower is better)
Translates to: SVSSALTEETSPDTV*LAVSLTSPSLSNFS
Trigger: ACTGAAGTTTGACAAAGAAGGTGACGTCAGAGAGACAGCTAGCCAAACGGTGTCTGGTGAAGTCTCTTCAGTTAGAGCAGAGGAAACGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
ENSMUST00000203940.3
CDS-3UTR CAA 90 bp ACATTCAATCCTCGCAGTAGCTCTAGGCTCTGCCCAGTACCGTTTAAGCTAGTACTGACGTCACCTTCTTaGTCAAACTTCAGTCTTTTC +
Preference number: 5 (lower is better)
Translates to: TFNPRSSSRLCPVPFKLVLTSPS*SNFSLF
Trigger: GAAAAGACTGAAGTTTGACAAAGAAGGTGACGTCAG...TACTAGCTTAAACGGTACTGGGCAGAGCCTAGAGCTACTGCGAGGATTGAATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
CDS-3UTR CAA 90 bp AGGAGCCGTACTCACAGCTCTTCCACATACAACCTTCAGGGTTTATTCTTAAGGCTGACGTCACCTTCTTaGTCAAACTTCAGTCTTTTC +
Preference number: 5 (lower is better)
Translates to: RSRTHSSSTYNLQGLFLRLTSPS*SNFSLF
Trigger: GAAAAGACTGAAGTTTGACAAAGAAGGTGACGTCAG...CCTTAAGAATAAACCCTGAAGGTTGTATGTGGAAGAGCTGTGAGTACGGCTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
CDS-3UTR CAA 90 bp CATATAGGATTATTCAGAAAGACAGATGTGATGTTGACAGTGTTCAGAAAAGCATGCAGCTCAGAATCTTaGCTATCTGTGCTCTCAGGC +
Preference number: 5 (lower is better)
Translates to: HIGLFRKTDVMLTVFRKACSSES*LSVLSG
Trigger: GCCTGAGAGCACAGATAGCAAAGATTCTGAGCTGCA...TGCTTTTCTGAACACTGTCAACATCACATCTGTCTTTCTGAATAATCCTATATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063854.7
CDS CCA 72 bp TGGACGACGGCACTGACACACTCTCTCCAGTCTTACTaGAAGGGGGCCCTCCTGACTCCTGTGTCTCCAGGC +
Preference number: 6 (lower is better)
Translates to: WTTALTHSLQSY*KGALLTPVSPG
Trigger: GCCTGGAGACACAGGAGTCAGGAGGGCCCCCTTCCAGTAAGACTGGAGAGAGTGTGTCAGTGCCGTCGTCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
CDS TCA 72 bp TTCTGCGGCTTCCTCACTCTCCATGGACGACGGCACTaGCACACTCTCTCCAGTCTTACTGGAAGGGGGCCC +
Preference number: 6 (lower is better)
Translates to: FCGFLTLHGRRH*HTLSSLTGRGP
Trigger: GGGCCCCCTTCCAGTAAGACTGGAGAGAGTGTGTCAGTGCCGTCGTCCATGGAGAGTGAGGAAGCCGCAGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
CDS CAA 72 bp CTGACTCCTGTGTCTCCAGGCAGTCAGAGCCACTCCTaGAGGCCCCTGCACTGTCACTCCTTTCTGAAGTGG +
Preference number: 6 (lower is better)
Translates to: LTPVSPGSQSHS*RPLHCHSFLKW
Trigger: CCACTTCAGAAAGGAGTGACAGTGCAGGGGCCTCAAGGAGTGGCTCTGACTGCCTGGAGACACAGGAGTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
CDS CCA 72 bp TCCTTGAGGCCCCTGCACTGTCACTCCTTTCTGAAGTaGAGTCTGTCTGAGCTGGAGACACACCAGAGCCTT +
Preference number: 6 (lower is better)
Translates to: SLRPLHCHSFLK*SLSELETHQSL
Trigger: AAGGCTCTGGTGTGTCTCCAGCTCAGACAGACTCCACTTCAGAAAGGAGTGACAGTGCAGGGGCCTCAAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
CDS CAA 72 bp TCTGTACAGTGCTGCCTGGTTCGACTTTCTCTGTCCTaGTCAGGAGGGGGAGCTGCTGTTTCCGTTTCCTCT +
Preference number: 6 (lower is better)
Translates to: SVQCCLVRLSLS*SGGGAAVSVSS
Trigger: AGAGGAAACGGAAACAGCAGCTCCCCCTCCTGACAAGGACAGAGAAAGTCGAACCAGGCAGCACTGTACAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
ENSMUST00000203940.3
CDS CAA 90 bp TCCTCCTCTTCTGTACAGTGCTGCCTGGTTCGACTTTCTCTGTCCTaGTCAGGAGGGGGAGCTGCTGTTTCCGTTTCCTCTGCTCTAACT +
Preference number: 6 (lower is better)
Translates to: SSSSVQCCLVRLSLS*SGGGAAVSVSSALT
Trigger: AGTTAGAGCAGAGGAAACGGAAACAGCAGCTCCCCCTCCTGACAAGGACAGAGAAAGTCGAACCAGGCAGCACTGTACAGAAGAGGAGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
ENSMUST00000203940.3
CDS CCA 72 bp TCTGCTCTAACTGAAGAGACTTCACCAGACACCGTTTaGCTAGCTGTCTCTCTGACGTCACCTTCTTTGTCA +
Preference number: 6 (lower is better)
Translates to: SALTEETSPDTV*LAVSLTSPSLS
Trigger: TGACAAAGAAGGTGACGTCAGAGAGACAGCTAGCCAAACGGTGTCTGGTGAAGTCTCTTCAGTTAGAGCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
ENSMUST00000203940.3
CDS CAA 90 bp TCACCAGACACCGTTTGGCTAGCTGTCTCTCTGACGTCACCTTCTTaGTCAAACTTCAGTCTTTTCACCTCATGTTCCTCAGACTCCACA +
Preference number: 6 (lower is better)
Translates to: SPDTVWLAVSLTSPS*SNFSLFTSCSSDST
Trigger: TGTGGAGTCTGAGGAACATGAGGTGAAAAGACTGAAGTTTGACAAAGAAGGTGACGTCAGAGAGACAGCTAGCCAAACGGTGTCTGGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
ENSMUST00000203940.3
CDS CAA 72 bp ACCGTTTGGCTAGCTGTCTCTCTGACGTCACCTTCTTaGTCAAACTTCAGTCTTTTCACCTCATGTTCCTCA +
Preference number: 6 (lower is better)
Translates to: TVWLAVSLTSPS*SNFSLFTSCSS
Trigger: TGAGGAACATGAGGTGAAAAGACTGAAGTTTGACAAAGAAGGTGACGTCAGAGAGACAGCTAGCCAAACGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000063854.7
ENSMUST00000203580.2
ENSMUST00000203940.3