Pregenerated sensors for PPP3R1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033953Ensembl transcript IDs: ENSMUST00000102880.5
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCAGAGCACATGGCGGTTGACACTGGGACAGATCAAACCACTGGCTaGGATTGCAAGCCATGTACTGATCCAGAGGGAGAAAGTAGTTAC | + |
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Preference number: 1 (lower is better) Translates to: AEHMAVDTGTDQTTG*DCKPCTDPEGESSY Trigger: GTAACTACTTTCTCCCTCTGGATCAGTACATGGCTTGCAATCCCAGCCAGTGGTTTGATCTGTCCCAGTGTCAACCGCCATGTGCTCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR GCA 90 bp | CACATGGCGGTTGACACTGGGACAGATCAAACCACTGGCTGGGATTaGAAGCCATGTACTGATCCAGAGGGAGAAAGTAGTTACATGGAG | + |
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Preference number: 1 (lower is better) Translates to: HMAVDTGTDQTTGWD*KPCTDPEGESSYME Trigger: CTCCATGTAACTACTTTCTCCCTCTGGATCAGTACATGGCTTGCAATCCCAGCCAGTGGTTTGATCTGTCCCAGTGTCAACCGCCATGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR CCA 90 bp | GAACCCACTCTTGGCAACAGCACTGAACTAGACCTCCAACAGAGATaGATTAAACGCTGCTCAGCAATAAGACACAGTCCCTGGAAAGAT | + |
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Preference number: 1 (lower is better) Translates to: EPTLGNSTELDLQQR*IKRCSAIRHSPWKD Trigger: ATCTTTCCAGGGACTGTGTCTTATTGCTGAGCAGCGTTTAATCCATCTCTGTTGGAGGTCTAGTTCAGTGCTGTTGCCAAGAGTGGGTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR TCA 90 bp | GTACCTTTGCAGAAAAGGGAAGGGATAATGTCAAGTGGTAGGACATaGCGCACTTTTATGTCACACAAATCTATTAAATCATCATCCATC | + |
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Preference number: 1 (lower is better) Translates to: VPLQKREGIMSSGRT*RTFMSHKSIKSSSI Trigger: GATGGATGATGATTTAATAGATTTGTGTGACATAAAAGTGCGTCATGTCCTACCACTTGACATTATCCCTTCCCTTTTCTGCAAAGGTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR-3UTR TCA 90 bp | AACTCCATGTCATGCAGAGACACCAAGCACCGGGGTTTCTCTCACAGACAGAGCTGTGCAGCACTCAGTTaGAGGGACAGCGGTGGCAGG | + |
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Preference number: 2 (lower is better) Translates to: NSMSCRDTKHRGFSHRQSCAALS*RDSGGR Trigger: CCTGCCACCGCTGTCCCTTCAACTGAGTGCTGCACA...GCTCTGTCTGTGAGAGAAACCCCGGTGCTTGGTGTCTCTGCATGACATGGAGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR-3UTR GCA 90 bp | GAGCACATGGCGGTTGACACTGGGACAGATCAAACCACTGGCTGGGATTGCAAGACAGAGCCCATGATGTaGAGCACTCAGTTGAAGGGA | + |
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Preference number: 2 (lower is better) Translates to: EHMAVDTGTDQTTGWDCKTEPMM*STQLKG Trigger: TCCCTTCAACTGAGTGCTGCACATCATGGGCTCTGT...CTTGCAATCCCAGCCAGTGGTTTGATCTGTCCCAGTGTCAACCGCCATGTGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR-3UTR TCA 90 bp | AACTCCATGTCATGCAGAGACACCAAGCACCGGGGTTTCTCTCACAGACAGAGCCATTGCTGGACGTCTTaGGCAGATCTTCAGAGATGG | + |
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Preference number: 2 (lower is better) Translates to: NSMSCRDTKHRGFSHRQSHCWTS*ADLQRW Trigger: CCATCTCTGAAGATCTGCTCAAGACGTCCAGCAATG...GCTCTGTCTGTGAGAGAAACCCCGGTGCTTGGTGTCTCTGCATGACATGGAGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR-3UTR TCA 90 bp | AACTCCATGTCATGCAGAGACACCAAGCACCGGGGTTTCTCTCACAGACAGAGCTCTTGGCAACAGCACTaGACTAGACCTCCAACAGAG | + |
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Preference number: 2 (lower is better) Translates to: NSMSCRDTKHRGFSHRQSSWQQH*TRPPTE Trigger: CTCTGTTGGAGGTCTAGTTCAGTGCTGTTGCCAAGA...GCTCTGTCTGTGAGAGAAACCCCGGTGCTTGGTGTCTCTGCATGACATGGAGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR-3UTR GCA 90 bp | AACTCCATGTCATGCAGAGACACCAAGCACCGGGGTTTCTCTCACAGACAGAGCTCCACCATACTGATATaGTCTTTCATGCTGCTGTCC | + |
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Preference number: 2 (lower is better) Translates to: NSMSCRDTKHRGFSHRQSSTILI*SFMLLS Trigger: GGACAGCAGCATGAAAGAGCATATCAGTATGGTGGA...GCTCTGTCTGTGAGAGAAACCCCGGTGCTTGGTGTCTCTGCATGACATGGAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR-3UTR GCA 90 bp | ATGCAGAGACACCAAGCACCGGGGTTTCTCTCACAGACAGAGCCCATGATGTGCAGCAGCCATAGCATATaGAGTTCTATGGACACAAGA | + |
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Preference number: 2 (lower is better) Translates to: MQRHQAPGFLSQTEPMMCSSHSI*SSMDTR Trigger: TCTTGTGTCCATAGAACTGCATATGCTATGGCTGCT...GCACATCATGGGCTCTGTCTGTGAGAGAAACCCCGGTGCTTGGTGTCTCTGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR-3UTR GCA 90 bp | ATGCAGAGACACCAAGCACCGGGGTTTCTCTCACAGACAGAGCCCATGATGTGCGGATGGTTTATGTTCTaGTTGGCACTTTTGTACTCT | + |
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Preference number: 2 (lower is better) Translates to: MQRHQAPGFLSQTEPMMCGWFMF*LALLYS Trigger: AGAGTACAAAAGTGCCAAGCAGAACATAAACCATCC...GCACATCATGGGCTCTGTCTGTGAGAGAAACCCCGGTGCTTGGTGTCTCTGCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR-3UTR CCA 90 bp | GCAGAGACACCAAGCACCGGGGTTTCTCTCACAGACAGAGCCCATGATGTGCAGATAAGACACAGTCCCTaGAAAGATAGTCAGAGATAT | + |
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Preference number: 2 (lower is better) Translates to: AETPSTGVSLTDRAHDVQIRHSP*KDSQRY Trigger: ATATCTCTGACTATCTTTCCAGGGACTGTGTCTTAT...CTGCACATCATGGGCTCTGTCTGTGAGAGAAACCCCGGTGCTTGGTGTCTCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR-3UTR TCA 90 bp | AGACACCAAGCACCGGGGTTTCTCTCACAGACAGAGCCCATGATGTGCAGCACTTTTAAAGTGCTACACTaGGTTATTGAGAGAGTAGGA | + |
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Preference number: 2 (lower is better) Translates to: RHQAPGFLSQTEPMMCSTFKVLH*VIERVG Trigger: TCCTACTCTCTCAATAACTCAGTGTAGCACTTTAAA...AGTGCTGCACATCATGGGCTCTGTCTGTGAGAGAAACCCCGGTGCTTGGTGTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR-3UTR CCA 90 bp | ATGCAGAGACACCAAGCACCGGGGTTTCTCTCACAGACAGAGCCCATGATGTGCTCAATAACACTTAGTTaGCTTCATGAGGCTCATGTT | + |
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Preference number: 2 (lower is better) Translates to: MQRHQAPGFLSQTEPMMCSITLS*LHEAHV Trigger: AACATGAGCCTCATGAAGCCAACTAAGTGTTATTGA...GCACATCATGGGCTCTGTCTGTGAGAGAAACCCCGGTGCTTGGTGTCTCTGCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR-3UTR GCA 90 bp | AGACACCAAGCACCGGGGTTTCTCTCACAGACAGAGCCCATGATGTGCAGCACTTATGCTCTTTCATGCTaGTGTCCTTCAAACTTTAAA | + |
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Preference number: 2 (lower is better) Translates to: RHQAPGFLSQTEPMMCSTYALSC*CPSNFK Trigger: TTTAAAGTTTGAAGGACAGCAGCATGAAAGAGCATA...AGTGCTGCACATCATGGGCTCTGTCTGTGAGAGAAACCCCGGTGCTTGGTGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR-3UTR CCA 90 bp | AGACACCAAGCACCGGGGTTTCTCTCACAGACAGAGCCCATGATGTGCAGCACTGACAAGTATTTCACATaGTTTCCCTTGTGTATAATG | + |
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Preference number: 2 (lower is better) Translates to: RHQAPGFLSQTEPMMCSTDKYFT*FPLCIM Trigger: CATTATACACAAGGGAAACCATGTGAAATACTTGTC...AGTGCTGCACATCATGGGCTCTGTCTGTGAGAGAAACCCCGGTGCTTGGTGTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR-3UTR TCA 90 bp | CCTGAAGCAGCCATAGCATATGCAGTTCTATGGACACAAGAACCCACTCTTGGCGCTACACTGAGTTATTaGGAGAGTAGGAGTTCAATA | + |
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Preference number: 2 (lower is better) Translates to: PEAAIAYAVLWTQEPTLGATLSY*ESRSSI Trigger: TATTGAACTCCTACTCTCTCAATAACTCAGTGTAGC...GCCAAGAGTGGGTTCTTGTGTCCATAGAACTGCATATGCTATGGCTGCTTCAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR-3UTR CCA 90 bp | TTGACACTGGGACAGATCAAACCACTGGCTGGGATTGCAAGCCATGTACTGATCGGTTTATGTTCTGCTTaGCACTTTTGTACTCTAACA | + |
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Preference number: 2 (lower is better) Translates to: LTLGQIKPLAGIASHVLIGLCSA*HFCTLT Trigger: TGTTAGAGTACAAAAGTGCCAAGCAGAACATAAACC...GATCAGTACATGGCTTGCAATCCCAGCCAGTGGTTTGATCTGTCCCAGTGTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR-3UTR CCA 90 bp | GTTGGCTTCATGAGGCTCATGTTGGAAAATGTGGCTTCACAGAGAAAAATACTTAGAAAGCAAAAGTGTTaGGTGGTATTCTTCAAAGAG | + |
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Preference number: 2 (lower is better) Translates to: VGFMRLMLENVASQRKILRKQKC*VVFFKE Trigger: CTCTTTGAAGAATACCACCCAACACTTTTGCTTTCT...AAGTATTTTTCTCTGTGAAGCCACATTTTCCAACATGAGCCTCATGAAGCCAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR-3UTR CCA 90 bp | GTACATTTTAAATTGATCTACATGCAAAACTCCATGTCATGCAGAGACACCAAGGCATATGCAGTTCTATaGACACAAGAACCCACTCTT | + |
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Preference number: 2 (lower is better) Translates to: VHFKLIYMQNSMSCRDTKAYAVL*TQEPTL Trigger: AAGAGTGGGTTCTTGTGTCCATAGAACTGCATATGC...CTTGGTGTCTCTGCATGACATGGAGTTTTGCATGTAGATCAATTTAAAATGTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR CCA 72 bp | ATGGCGGTTGACACTGGGACAGATCAAACCACTGGCTaGGATTGCAAGCCATGTACTGATCCAGAGGGAGAA | + |
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Preference number: 3 (lower is better) Translates to: MAVDTGTDQTTG*DCKPCTDPEGE Trigger: TTCTCCCTCTGGATCAGTACATGGCTTGCAATCCCAGCCAGTGGTTTGATCTGTCCCAGTGTCAACCGCCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR-3UTR CAA 90 bp | CATGCAGAGACACCAAGCACCGGGGTTTCTCTCACAGACAGAGCCCATGATGTGCGATCAACAGTACCTTaGCAGAAAAGGGAAGGGATA | + |
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Preference number: 3 (lower is better) Translates to: HAETPSTGVSLTDRAHDVRSTVP*QKREGI Trigger: TATCCCTTCCCTTTTCTGCAAAGGTACTGTTGATCG...CACATCATGGGCTCTGTCTGTGAGAGAAACCCCGGTGCTTGGTGTCTCTGCATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR-3UTR CAA 90 bp | TTGACACTGGGACAGATCAAACCACTGGCTGGGATTGCAAGCCATGTACTGATCGCATTGCTGGACGTCTaGAGCAGATCTTCAGAGATG | + |
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Preference number: 3 (lower is better) Translates to: LTLGQIKPLAGIASHVLIALLDV*SRSSEM Trigger: CATCTCTGAAGATCTGCTCAAGACGTCCAGCAATGC...GATCAGTACATGGCTTGCAATCCCAGCCAGTGGTTTGATCTGTCCCAGTGTCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR CCA 72 bp | CCCATGATGTGCAGCACTCAGTTGAAGGGACAGCGGTaGCAGGCAGGTAGACTCAATTTAATATTCTCTCAC | + |
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Preference number: 3 (lower is better) Translates to: PMMCSTQLKGQR*QAGRLNLIFSH Trigger: GTGAGAGAATATTAAATTGAGTCTACCTGCCTGCCACCGCTGTCCCTTCAACTGAGTGCTGCACATCATGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR CCA 72 bp | TCACAAAAGACTAGTTCCCTCTTGAAGCAGAGCACATaGCGGTTGACACTGGGACAGATCAAACCACTGGCT | + |
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Preference number: 3 (lower is better) Translates to: SQKTSSLLKQST*RLTLGQIKPLA Trigger: AGCCAGTGGTTTGATCTGTCCCAGTGTCAACCGCCATGTGCTCTGCTTCAAGAGGGAACTAGTCTTTTGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR CCA 72 bp | CTTGGCAACAGCACTGAACTAGACCTCCAACAGAGATaGATTAAACGCTGCTCAGCAATAAGACACAGTCCC | + |
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Preference number: 3 (lower is better) Translates to: LGNSTELDLQQR*IKRCSAIRHSP Trigger: GGGACTGTGTCTTATTGCTGAGCAGCGTTTAATCCATCTCTGTTGGAGGTCTAGTTCAGTGCTGTTGCCAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR-3UTR CAA 90 bp | GAGCACATGGCGGTTGACACTGGGACAGATCAAACCACTGGCTGGGATTGCAAGAATACCTGGCGCAAATaGTACAATCTTCTATCTACA | + |
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Preference number: 3 (lower is better) Translates to: EHMAVDTGTDQTTGWDCKNTWRK*YNLLST Trigger: TGTAGATAGAAGATTGTACAATTTGCGCCAGGTATT...CTTGCAATCCCAGCCAGTGGTTTGATCTGTCCCAGTGTCAACCGCCATGTGCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR CCA 72 bp | TATCAGCCTGAAGCAGCCATAGCATATGCAGTTCTATaGACACAAGAACCCACTCTTGGCAACAGCACTGAA | + |
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Preference number: 3 (lower is better) Translates to: YQPEAAIAYAVL*TQEPTLGNSTE Trigger: TTCAGTGCTGTTGCCAAGAGTGGGTTCTTGTGTCCATAGAACTGCATATGCTATGGCTGCTTCAGGCTGATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR TCA 72 bp | ATCTTGCCGATATCTGGCAGAGAAATTTTAAAGATGTaGCTATGGACAAAATCTGCTCTCCTGTGGCGTGTA | + |
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Preference number: 3 (lower is better) Translates to: ILPISGREILKM*LWTKSALLWRV Trigger: TACACGCCACAGGAGAGCAGATTTTGTCCATAGTCACATCTTTAAAATTTCTCTGCCAGATATCGGCAAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR-3UTR CAA 90 bp | GTACATTTTAAATTGATCTACATGCAAAACTCCATGTCATGCAGAGACACCAAGAATACACAGAGAGCATaGCTGGACGTCTTGAGCAGA | + |
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Preference number: 3 (lower is better) Translates to: VHFKLIYMQNSMSCRDTKNTQRA*LDVLSR Trigger: TCTGCTCAAGACGTCCAGCAATGCTCTCTGTGTATT...CTTGGTGTCTCTGCATGACATGGAGTTTTGCATGTAGATCAATTTAAAATGTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR TCA 72 bp | CAGAAAAGGGAAGGGATAATGTCAAGTGGTAGGACATaGCGCACTTTTATGTCACACAAATCTATTAAATCA | + |
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Preference number: 3 (lower is better) Translates to: QKREGIMSSGRT*RTFMSHKSIKS Trigger: TGATTTAATAGATTTGTGTGACATAAAAGTGCGTCATGTCCTACCACTTGACATTATCCCTTCCCTTTTCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR GCA 72 bp | AAACCAATTGGTATAGAAAAACTGTGTAGGGAAGACTaGCATATAAAACTAGCCAGAATCTCTTTCTTCCGA | + |
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Preference number: 3 (lower is better) Translates to: KPIGIEKLCRED*HIKLARISFFR Trigger: TCGGAAGAAAGAGATTCTGGCTAGTTTTATATGGCAGTCTTCCCTACACAGTTTTTCTATACCAATTGGTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| CDS-3UTR CCA 90 bp | ATGCAGAGACACCAAGCACCGGGGTTTCTCTCACAGACAGAGCCCATGATGTGCACCACCATCTTTTTGTaGATATCTAGGCCACCTACG | + |
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Preference number: 4 (lower is better) Translates to: MQRHQAPGFLSQTEPMMCTTIFL*ISRPPT Trigger: CGTAGGTGGCCTAGATATCCACAAAAAGATGGTGGT...GCACATCATGGGCTCTGTCTGTGAGAGAAACCCCGGTGCTTGGTGTCTCTGCAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| CDS-3UTR CCA 90 bp | AACTCCATGTCATGCAGAGACACCAAGCACCGGGGTTTCTCTCACAGACAGAGCATCATCTTCAACACCTaGAAGAGTTCTCCATTGGAA | + |
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Preference number: 4 (lower is better) Translates to: NSMSCRDTKHRGFSHRQSIIFNT*KSSPLE Trigger: TTCCAATGGAGAACTCTTCCAGGTGTTGAAGATGAT...GCTCTGTCTGTGAGAGAAACCCCGGTGCTTGGTGTCTCTGCATGACATGGAGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR CAA 72 bp | TTCCATTTAAATACACAGAGAGCATTGCTGGACGTCTaGAGCAGATCTTCAGAGATGGAGAAGAAAGCAAAA | + |
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Preference number: 4 (lower is better) Translates to: FHLNTQRALLDV*SRSSEMEKKAK Trigger: TTTTGCTTTCTTCTCCATCTCTGAAGATCTGCTCAAGACGTCCAGCAATGCTCTCTGTGTATTTAAATGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| CDS-3UTR TCA 90 bp | GTACATTTTAAATTGATCTACATGCAAAACTCCATGTCATGCAGAGACACCAAGATCAGCATCAAAGTGTaGGCACATTTCCAAAGGGTA | + |
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Preference number: 4 (lower is better) Translates to: VHFKLIYMQNSMSCRDTKISIKV*AHFQRV Trigger: TACCCTTTGGAAATGTGCTCACACTTTGATGCTGAT...CTTGGTGTCTCTGCATGACATGGAGTTTTGCATGTAGATCAATTTAAAATGTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| 3UTR CAA 72 bp | TTACAGTTCAGTGACAAGTATTTCACATGGTTTCCCTaGTGTATAATGGAACAAGGATATTTTAAGCCACTG | + |
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Preference number: 4 (lower is better) Translates to: LQFSDKYFTWFP*CIMEQGYFKPL Trigger: CAGTGGCTTAAAATATCCTTGTTCCATTATACACAAGGGAAACCATGTGAAATACTTGTCACTGAACTGTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| CDS-3UTR CAA 90 bp | GCAGAGACACCAAGCACCGGGGTTTCTCTCACAGACAGAGCCCATGATGTGCAGCCTTCAATGAATTCTTaGAAGTCCACTTCTCCGTTG | + |
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Preference number: 5 (lower is better) Translates to: AETPSTGVSLTDRAHDVQPSMNS*KSTSPL Trigger: CAACGGAGAAGTGGACTTCAAAGAATTCATTGAAGG...CTGCACATCATGGGCTCTGTCTGTGAGAGAAACCCCGGTGCTTGGTGTCTCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| CDS-3UTR CAA 90 bp | ATGCAGAGACACCAAGCACCGGGGTTTCTCTCACAGACAGAGCCCATGATGTGCTCCAAATCAAGCTTCTaGAATCTCTTTCCTAGCCTT | + |
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Preference number: 5 (lower is better) Translates to: MQRHQAPGFLSQTEPMMCSKSSF*NLFPSL Trigger: AAGGCTAGGAAAGAGATTCAAGAAGCTTGATTTGGA...GCACATCATGGGCTCTGTCTGTGAGAGAAACCCCGGTGCTTGGTGTCTCTGCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| CDS TCA 90 bp | TTACCCGCTGTACTAAAGGGTTCTGCTGTAACTCAGGCAGAGACATaGACTCTTCCACGCTCAAAGAACCAGAATTGTCCAAATCAAGCT | + |
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Preference number: 5 (lower is better) Translates to: LPAVLKGSAVTQAET*TLPRSKNQNCPNQA Trigger: AGCTTGATTTGGACAATTCTGGTTCTTTGAGCGTGGAAGAGTTCATGTCTCTGCCTGAGTTACAGCAGAACCCTTTAGTACAGCGGGTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| CDS-3UTR CAA 90 bp | GTACATTTTAAATTGATCTACATGCAAAACTCCATGTCATGCAGAGACACCAAGTCCACCACCATCTTTTaGTGGATATCTAGGCCACCT | + |
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Preference number: 5 (lower is better) Translates to: VHFKLIYMQNSMSCRDTKSTTIF*WISRPP Trigger: AGGTGGCCTAGATATCCACAAAAAGATGGTGGTGGA...CTTGGTGTCTCTGCATGACATGGAGTTTTGCATGTAGATCAATTTAAAATGTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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| CDS-3UTR CAA 90 bp | GTACATTTTAAATTGATCTACATGCAAAACTCCATGTCATGCAGAGACACCAAGTGTGTATCTTTCAGATaGTTGCCCACCATCATCTTC | + |
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Preference number: 5 (lower is better) Translates to: VHFKLIYMQNSMSCRDTKCVSFR*LPTIIF Trigger: GAAGATGATGGTGGGCAACAATCTGAAAGATACACA...CTTGGTGTCTCTGCATGACATGGAGTTTTGCATGTAGATCAATTTAAAATGTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102880.5 |
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