RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PPP3CC (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022092

Ensembl transcript IDs: ENSMUST00000078434.8, ENSMUST00000228911.2

Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CAA 90 bp CTGAATTACAAATGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATGATTTGCTCATAGGGTaGGGACCCATCTGTGCTGCA +
Preference number: 3 (lower is better)
Translates to: LNYKCTSKFKLFELFLFHDLLIG*GPICAA
Trigger: TGCAGCACAGATGGGTCCCAACCCTATGAGCAAATC...ATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCATTTGTAATTCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
3UTR-3UTR CAA 90 bp CTGAATTACAAATGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATATAAATAAATGTGATTaGCTCATAGGGTTGGGACCC +
Preference number: 3 (lower is better)
Translates to: LNYKCTSKFKLFELFLFHINKCD*LIGLGP
Trigger: GGGTCCCAACCCTATGAGCAAATCACATTTATTTAT...ATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCATTTGTAATTCAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR TCA 90 bp AAATGTGATTTGCTCATAGGGTTGGGACCCATCTGTGCTGCACAGGGCCCTGAGATGGTCGGTCCTTCTTaGCGCCTGTGGGTGTGGCGG +
Preference number: 4 (lower is better)
Translates to: KCDLLIGLGPICAAQGPEMVGPS*RLWVWR
Trigger: CCGCCACACCCACAGGCGTCAAGAAGGACCGACCAT...CTCAGGGCCCTGTGCAGCACAGATGGGTCCCAACCCTATGAGCAAATCACATTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CCA 90 bp AAATGTGATTTGCTCATAGGGTTGGGACCCATCTGTGCTGCACAGGGCCCTGAGAGAGAGGACCCCCAGTaGGAGTGTGCCTGTGGGAGT +
Preference number: 4 (lower is better)
Translates to: KCDLLIGLGPICAAQGPEREDPQ*ECACGS
Trigger: ACTCCCACAGGCACACTCCCACTGGGGGTCCTCTCT...CTCAGGGCCCTGTGCAGCACAGATGGGTCCCAACCCTATGAGCAAATCACATTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR GCA 90 bp AAATGTGATTTGCTCATAGGGTTGGGACCCATCTGTGCTGCACAGGGCCCTGAGGGCTTCCCGCTCCTCTaGGGCTTCTTGTTTGGCAGT +
Preference number: 4 (lower is better)
Translates to: KCDLLIGLGPICAAQGPEGFPLL*GFLFGS
Trigger: ACTGCCAAACAAGAAGCCGCAGAGGAGCGGGAAGCC...CTCAGGGCCCTGTGCAGCACAGATGGGTCCCAACCCTATGAGCAAATCACATTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR GCA 90 bp AAATGTGATTTGCTCATAGGGTTGGGACCCATCTGTGCTGCACAGGGCCCTGAGATCATGGTCTTCTCCTaGTTCAGGATGGCAGCCCCA +
Preference number: 4 (lower is better)
Translates to: KCDLLIGLGPICAAQGPEIMVFS*FRMAAP
Trigger: TGGGGCTGCCATCCTGAAGCAGGAGAAGACCATGAT...CTCAGGGCCCTGTGCAGCACAGATGGGTCCCAACCCTATGAGCAAATCACATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR TCA 90 bp AAATGTGATTTGCTCATAGGGTTGGGACCCATCTGTGCTGCACAGGGCCCTGAGAGATGCCTGCATTCATaGTTTCCTCGAAGCAGAAAC +
Preference number: 4 (lower is better)
Translates to: KCDLLIGLGPICAAQGPERCLHS*FPRSRN
Trigger: GTTTCTGCTTCGAGGAAATCATGAATGCAGGCATCT...CTCAGGGCCCTGTGCAGCACAGATGGGTCCCAACCCTATGAGCAAATCACATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR GCA 90 bp AAATGTGATTTGCTCATAGGGTTGGGACCCATCTGTGCTGCACAGGGCCCTGAGTGTACACAGAGAAACTaGTGGTTTAAGAGGGCAGCA +
Preference number: 4 (lower is better)
Translates to: KCDLLIGLGPICAAQGPECTQRN*WFKRAA
Trigger: TGCTGCCCTCTTAAACCAGCAGTTTCTCTGTGTACA...CTCAGGGCCCTGTGCAGCACAGATGGGTCCCAACCCTATGAGCAAATCACATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR TCA 90 bp AAATGTGATTTGCTCATAGGGTTGGGACCCATCTGTGCTGCACAGGGCCCTGAGGAAAATCGTAATAAGTaGCGGAAAGCCAGTTGCTTG +
Preference number: 4 (lower is better)
Translates to: KCDLLIGLGPICAAQGPEENRNK*RKASCL
Trigger: CAAGCAACTGGCTTTCCGTCACTTATTACGATTTTC...CTCAGGGCCCTGTGCAGCACAGATGGGTCCCAACCCTATGAGCAAATCACATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR GCA 90 bp AAATGTGATTTGCTCATAGGGTTGGGACCCATCTGTGCTGCACAGGGCCCTGAGACTTCGGATCCTGTGTaGAATTGTAAAACCTCTGAT +
Preference number: 4 (lower is better)
Translates to: KCDLLIGLGPICAAQGPETSDPV*NCKTSD
Trigger: ATCAGAGGTTTTACAATTGCACACAGGATCCGAAGT...CTCAGGGCCCTGTGCAGCACAGATGGGTCCCAACCCTATGAGCAAATCACATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR TCA 90 bp GCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAATATGGTCGGTCCTTCTTaGCGCCTGTGGGTGTGGCGG +
Preference number: 4 (lower is better)
Translates to: APPSLSCLSCSCFISSINMVGPS*RLWVWR
Trigger: CCGCCACACCCACAGGCGTCAAGAAGGACCGACCAT...ATTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR TCA 90 bp TGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAATGGCGGATGCGAGTGTaGGTGCATCCTCCCTGCATC +
Preference number: 4 (lower is better)
Translates to: CTSKFKLFELFLFHFQYKWRMRV*VHPPCI
Trigger: GATGCAGGGAGGATGCACTCACACTCGCATCCGCCA...TTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR TCA 90 bp GCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAATTGGCGGATGCGAGTGTaGGTGCATCCTCCCTGCATC +
Preference number: 4 (lower is better)
Translates to: APPSLSCLSCSCFISSINWRMRV*VHPPCI
Trigger: GATGCAGGGAGGATGCACTCACACTCGCATCCGCCA...ATTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CCA 90 bp TGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAAAGAGAGGACCCCCAGTaGGAGTGTGCCTGTGGGAGT +
Preference number: 4 (lower is better)
Translates to: CTSKFKLFELFLFHFQYKREDPQ*ECACGS
Trigger: ACTCCCACAGGCACACTCCCACTGGGGGTCCTCTCT...TTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CCA 90 bp GCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAATCGGTACCCCGCATCCTaGGCTTCATGGGCTCTGATT +
Preference number: 4 (lower is better)
Translates to: APPSLSCLSCSCFISSINRYPAS*ASWALI
Trigger: AATCAGAGCCCATGAAGCCCAGGATGCGGGGTACCG...ATTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CCA 90 bp CTGAATTACAAATGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATCGGTACCCCGCATCCTaGGCTTCATGGGCTCTGATT +
Preference number: 4 (lower is better)
Translates to: LNYKCTSKFKLFELFLFHRYPAS*ASWALI
Trigger: AATCAGAGCCCATGAAGCCCAGGATGCGGGGTACCG...ATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCATTTGTAATTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR GCA 90 bp GCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAATATCATGGTCTTCTCCTaGTTCAGGATGGCAGCCCCA +
Preference number: 4 (lower is better)
Translates to: APPSLSCLSCSCFISSINIMVFS*FRMAAP
Trigger: TGGGGCTGCCATCCTGAAGCAGGAGAAGACCATGAT...ATTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
3UTR CAA 72 bp TGTTCCTGTTTCATTTCCAGTATAAATAAATGTGATTaGCTCATAGGGTTGGGACCCATCTGTGCTGCACAG +
Preference number: 4 (lower is better)
Translates to: CSCFISSINKCD*LIGLGPICAAQ
Trigger: CTGTGCAGCACAGATGGGTCCCAACCCTATGAGCAAATCACATTTATTTATACTGGAAATGAAACAGGAACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CCA 90 bp TGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAAGTTTGGCAGTCTCAATaGTCTGCTTTCCTCCAGAGA +
Preference number: 4 (lower is better)
Translates to: CTSKFKLFELFLFHFQYKVWQSQ*SAFLQR
Trigger: TCTCTGGAGGAAAGCAGACCATTGAGACTGCCAAAC...TTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CCA 90 bp GCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAATGTTTGGCAGTCTCAATaGTCTGCTTTCCTCCAGAGA +
Preference number: 4 (lower is better)
Translates to: APPSLSCLSCSCFISSINVWQSQ*SAFLQR
Trigger: TCTCTGGAGGAAAGCAGACCATTGAGACTGCCAAAC...ATTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR TCA 90 bp TGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAAGCGAGTATTACTAGGTaGTCCCCCAACTTCAAACAA +
Preference number: 4 (lower is better)
Translates to: CTSKFKLFELFLFHFQYKASITR*SPNFKQ
Trigger: TTGTTTGAAGTTGGGGGATCACCTAGTAATACTCGC...TTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR TCA 90 bp CTGAATTACAAATGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATGCGAGTATTACTAGGTaGTCCCCCAACTTCAAACAA +
Preference number: 4 (lower is better)
Translates to: LNYKCTSKFKLFELFLFHASITR*SPNFKQ
Trigger: TTGTTTGAAGTTGGGGGATCACCTAGTAATACTCGC...ATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCATTTGTAATTCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR TCA 90 bp GCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAATAGATGCCTGCATTCATaGTTTCCTCGAAGCAGAAAC +
Preference number: 4 (lower is better)
Translates to: APPSLSCLSCSCFISSINRCLHS*FPRSRN
Trigger: GTTTCTGCTTCGAGGAAATCATGAATGCAGGCATCT...ATTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR GCA 90 bp TGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAATGTACACAGAGAAACTaGTGGTTTAAGAGGGCAGCA +
Preference number: 4 (lower is better)
Translates to: CTSKFKLFELFLFHFQYKCTQRN*WFKRAA
Trigger: TGCTGCCCTCTTAAACCAGCAGTTTCTCTGTGTACA...TTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CCA 90 bp TGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAAACACAGAGAAACTGCTaGTTTAAGAGGGCAGCAAGA +
Preference number: 4 (lower is better)
Translates to: CTSKFKLFELFLFHFQYKTQRNC*FKRAAR
Trigger: TCTTGCTGCCCTCTTAAACCAGCAGTTTCTCTGTGT...TTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CCA 90 bp CTGAATTACAAATGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATACACAGAGAAACTGCTaGTTTAAGAGGGCAGCAAGA +
Preference number: 4 (lower is better)
Translates to: LNYKCTSKFKLFELFLFHTQRNC*FKRAAR
Trigger: TCTTGCTGCCCTCTTAAACCAGCAGTTTCTCTGTGT...ATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCATTTGTAATTCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CCA 90 bp GCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAATGGAAAGCCAGTTGCTTaGTTCTTCCTATACATTCGG +
Preference number: 4 (lower is better)
Translates to: APPSLSCLSCSCFISSINGKPVA*FFLYIR
Trigger: CCGAATGTATAGGAAGAACCAAGCAACTGGCTTTCC...ATTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR TCA 90 bp GCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAATGAAAATCGTAATAAGTaGCGGAAAGCCAGTTGCTTG +
Preference number: 4 (lower is better)
Translates to: APPSLSCLSCSCFISSINENRNK*RKASCL
Trigger: CAAGCAACTGGCTTTCCGTCACTTATTACGATTTTC...ATTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR TCA 90 bp CTGAATTACAAATGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATGGGCTTCATGGGCTCTaGTTATTGATAATAAACTGT +
Preference number: 4 (lower is better)
Translates to: LNYKCTSKFKLFELFLFHGLHGL*LLIINC
Trigger: ACAGTTTATTATCAATAATCAGAGCCCATGAAGCCC...ATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCATTTGTAATTCAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR TCA 90 bp GCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAATTCCTTTTGGACAGCTTaGAATGTAGTGATCTTCTTC +
Preference number: 4 (lower is better)
Translates to: APPSLSCLSCSCFISSINSFWTA*NVVIFF
Trigger: GAAGAAGATCACTACATTTCAAGCTGTCCAAAAGGA...ATTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228911.2
3UTR CAA 72 bp ATGCGACTGAATTACAAATGCACCTCCAAGTTTAAGTaGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAA +
Preference number: 4 (lower is better)
Translates to: MRLNYKCTSKFK*FELFLFHFQYK
Trigger: TTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCATTTGTAATTCAGTCGCAT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS GCA 90 bp GCTTCCCGCTCCTCTGCGGCTTCTTGTTTGGCAGTCTCAATGGTCTaGTTTCCTCCAGAGAGGACCCCCAGTGGGAGTGTGCCTGTGGGA +
Preference number: 5 (lower is better)
Translates to: ASRSSAASCLAVSMV*FPPERTPSGSVPVG
Trigger: TCCCACAGGCACACTCCCACTGGGGGTCCTCTCTGGAGGAAAGCAGACCATTGAGACTGCCAAACAAGAAGCCGCAGAGGAGCGGGAAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS GCA 90 bp AGCCTCGGACAGTGTTGTGGGTATAGTGCTCCAGGGTCTTCTCGCTaGCGTAGTCCTCTAAGGGATCAGACCACAGCAGGTCACACACTG +
Preference number: 5 (lower is better)
Translates to: SLGQCCGYSAPGSSR*RSPLRDQTTAGHTL
Trigger: CAGTGTGTGACCTGCTGTGGTCTGATCCCTTAGAGGACTACGGCAGCGAGAAGACCCTGGAGCACTATACCCACAACACTGTCCGAGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CAA 90 bp AAATGTGATTTGCTCATAGGGTTGGGACCCATCTGTGCTGCACAGGGCCCTGAGAAGTTAGCCGTCGGGTaGGAGGAAAGGGGACAGCTT +
Preference number: 5 (lower is better)
Translates to: KCDLLIGLGPICAAQGPEKLAVG*EERGQL
Trigger: AAGCTGTCCCCTTTCCTCCAACCCGACGGCTAACTT...CTCAGGGCCCTGTGCAGCACAGATGGGTCCCAACCCTATGAGCAAATCACATTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CAA 90 bp AAATGTGATTTGCTCATAGGGTTGGGACCCATCTGTGCTGCACAGGGCCCTGAGGGGTGTGGGGAACAGTaGAACTGCCTGATGTTCATG +
Preference number: 5 (lower is better)
Translates to: KCDLLIGLGPICAAQGPEGCGEQ*NCLMFM
Trigger: CATGAACATCAGGCAGTTCAACTGTTCCCCACACCC...CTCAGGGCCCTGTGCAGCACAGATGGGTCCCAACCCTATGAGCAAATCACATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS GCA 90 bp GATCCTGTGTGCAATTGTAAAACCTCTGATGGCTTCCCGCTCCTCTaGGGCTTCTTGTTTGGCAGTCTCAATGGTCTGCTTTCCTCCAGA +
Preference number: 5 (lower is better)
Translates to: DPVCNCKTSDGFPLL*GFLFGSLNGLLSSR
Trigger: TCTGGAGGAAAGCAGACCATTGAGACTGCCAAACAAGAAGCCGCAGAGGAGCGGGAAGCCATCAGAGGTTTTACAATTGCACACAGGATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CAA 90 bp AAATGTGATTTGCTCATAGGGTTGGGACCCATCTGTGCTGCACAGGGCCCTGAGCATCAGGTCAAAGAATaGTCCATGAACATCACCACA +
Preference number: 5 (lower is better)
Translates to: KCDLLIGLGPICAAQGPEHQVKE*SMNITT
Trigger: TGTGGTGATGTTCATGGACAATTCTTTGACCTGATG...CTCAGGGCCCTGTGCAGCACAGATGGGTCCCAACCCTATGAGCAAATCACATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CAA 90 bp AAATGTGATTTGCTCATAGGGTTGGGACCCATCTGTGCTGCACAGGGCCCTGAGACCATCTCTGAATACTaGATCCGACATTCCTGTTTG +
Preference number: 5 (lower is better)
Translates to: KCDLLIGLGPICAAQGPETISEY*IRHSCL
Trigger: CAAACAGGAATGTCGGATCAAGTATTCAGAGATGGT...CTCAGGGCCCTGTGCAGCACAGATGGGTCCCAACCCTATGAGCAAATCACATTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS CCA 90 bp AAGCCAGTTGCTTGGTTCTTCCTATACATTCGGTACCCCGCATCCTaGGCTTCATGGGCTCTGATTATTGATAATAAACTGTTGTTCTGT +
Preference number: 5 (lower is better)
Translates to: KPVAWFFLYIRYPAS*ASWALIIDNKLLFC
Trigger: ACAGAACAACAGTTTATTATCAATAATCAGAGCCCATGAAGCCCAGGATGCGGGGTACCGAATGTATAGGAAGAACCAAGCAACTGGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CAA 90 bp GCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAATGTGGGAGTGAGGCCCTaGAGGGTCAGCACATTCTCA +
Preference number: 5 (lower is better)
Translates to: APPSLSCLSCSCFISSINVGVRP*RVSTFS
Trigger: TGAGAATGTGCTGACCCTCAAGGGCCTCACTCCCAC...ATTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CAA 90 bp CTGAATTACAAATGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATGTGGGAGTGAGGCCCTaGAGGGTCAGCACATTCTCA +
Preference number: 5 (lower is better)
Translates to: LNYKCTSKFKLFELFLFHVGVRP*RVSTFS
Trigger: TGAGAATGTGCTGACCCTCAAGGGCCTCACTCCCAC...ATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCATTTGTAATTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CAA 90 bp TGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAAAAGTTAGCCGTCGGGTaGGAGGAAAGGGGACAGCTT +
Preference number: 5 (lower is better)
Translates to: CTSKFKLFELFLFHFQYKKLAVG*EERGQL
Trigger: AAGCTGTCCCCTTTCCTCCAACCCGACGGCTAACTT...TTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CAA 90 bp CTGAATTACAAATGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATGGGTGTGGGGAACAGTaGAACTGCCTGATGTTCATG +
Preference number: 5 (lower is better)
Translates to: LNYKCTSKFKLFELFLFHGCGEQ*NCLMFM
Trigger: CATGAACATCAGGCAGTTCAACTGTTCCCCACACCC...ATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCATTTGTAATTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CAA 90 bp TGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAATCTGCGGCTTCTTGTTaGGCAGTCTCAATGGTCTGC +
Preference number: 5 (lower is better)
Translates to: CTSKFKLFELFLFHFQYKSAASC*AVSMVC
Trigger: GCAGACCATTGAGACTGCCAAACAAGAAGCCGCAGA...TTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CAA 90 bp CTGAATTACAAATGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTCTGCGGCTTCTTGTTaGGCAGTCTCAATGGTCTGC +
Preference number: 5 (lower is better)
Translates to: LNYKCTSKFKLFELFLFHSAASC*AVSMVC
Trigger: GCAGACCATTGAGACTGCCAAACAAGAAGCCGCAGA...ATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCATTTGTAATTCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS CCA 90 bp GCTTGGTTCTTCCTATACATTCGGTACCCCGCATCCTGGGCTTCATaGGCTCTGATTATTGATAATAAACTGTTGTTCTGTAAAAATTCA +
Preference number: 5 (lower is better)
Translates to: AWFFLYIRYPASWAS*ALIIDNKLLFCKNS
Trigger: TGAATTTTTACAGAACAACAGTTTATTATCAATAATCAGAGCCCATGAAGCCCAGGATGCGGGGTACCGAATGTATAGGAAGAACCAAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CAA 90 bp TGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAAATGGCAGCCCCATCATaGATGATCTTTAAGGCCACC +
Preference number: 5 (lower is better)
Translates to: CTSKFKLFELFLFHFQYKMAAPS*MIFKAT
Trigger: GGTGGCCTTAAAGATCATCAATGATGGGGCTGCCAT...TTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS TCA 90 bp CTTGATGACTTCTTTTCGACCTGTAGTAGCTCCTTTTGGACAGCTTaGAATGTAGTGATCTTCTTCATCGGTTACGTTCATTTCTTCATC +
Preference number: 5 (lower is better)
Translates to: LDDFFSTCSSSFWTA*NVVIFFIGYVHFFI
Trigger: GATGAAGAAATGAACGTAACCGATGAAGAAGATCACTACATTTCAAGCTGTCCAAAAGGAGCTACTACAGGTCGAAAAGAAGTCATCAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228911.2
CDS TCA 90 bp CATTCCTGTTTGAAGGTGAAGTACTCTGTAAGATGCCTGCATTCATaGTTTCCTCGAAGCAGAAACAATGTTTTAGGATGGTTAATCTTT +
Preference number: 5 (lower is better)
Translates to: HSCLKVKYSVRCLHS*FPRSRNNVLGWLIF
Trigger: AAAGATTAACCATCCTAAAACATTGTTTCTGCTTCGAGGAAATCATGAATGCAGGCATCTTACAGAGTACTTCACCTTCAAACAGGAATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CAA 90 bp CTGAATTACAAATGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATCATCAGGTCAAAGAATaGTCCATGAACATCACCACA +
Preference number: 5 (lower is better)
Translates to: LNYKCTSKFKLFELFLFHHQVKE*SMNITT
Trigger: TGTGGTGATGTTCATGGACAATTCTTTGACCTGATG...ATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCATTTGTAATTCAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CAA 90 bp GCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAATATCCGACATTCCTGTTaGAAGGTGAAGTACTCTGTA +
Preference number: 5 (lower is better)
Translates to: APPSLSCLSCSCFISSINIRHSC*KVKYSV
Trigger: TACAGAGTACTTCACCTTCAAACAGGAATGTCGGAT...ATTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CAA 90 bp TGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAAATCCGACATTCCTGTTaGAAGGTGAAGTACTCTGTA +
Preference number: 5 (lower is better)
Translates to: CTSKFKLFELFLFHFQYKIRHSC*KVKYSV
Trigger: TACAGAGTACTTCACCTTCAAACAGGAATGTCGGAT...TTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CAA 90 bp GCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAATACCATCTCTGAATACTaGATCCGACATTCCTGTTTG +
Preference number: 5 (lower is better)
Translates to: APPSLSCLSCSCFISSINTISEY*IRHSCL
Trigger: CAAACAGGAATGTCGGATCAAGTATTCAGAGATGGT...ATTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CAA 90 bp TGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAATCATCCGAGCATATGTaGAGAATATTGACCAGCATC +
Preference number: 5 (lower is better)
Translates to: CTSKFKLFELFLFHFQYKSSEHM*RILTSI
Trigger: GATGCTGGTCAATATTCTCAACATATGCTCGGATGA...TTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CAA 90 bp GCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAATTCATCCGAGCATATGTaGAGAATATTGACCAGCATC +
Preference number: 5 (lower is better)
Translates to: APPSLSCLSCSCFISSINSSEHM*RILTSI
Trigger: GATGCTGGTCAATATTCTCAACATATGCTCGGATGA...ATTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CAA 90 bp TGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAAGCTCGGATTTTATTCTaGATGACTTCTTTTCGACCT +
Preference number: 5 (lower is better)
Translates to: CTSKFKLFELFLFHFQYKARILF*MTSFRP
Trigger: AGGTCGAAAAGAAGTCATCAAGAATAAAATCCGAGC...TTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CAA 90 bp CTGAATTACAAATGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATGCTCGGATTTTATTCTaGATGACTTCTTTTCGACCT +
Preference number: 5 (lower is better)
Translates to: LNYKCTSKFKLFELFLFHARILF*MTSFRP
Trigger: AGGTCGAAAAGAAGTCATCAAGAATAAAATCCGAGC...ATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCATTTGTAATTCAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS-3UTR CAA 90 bp TGCACCTCCAAGTTTAAGTTGTTTGAGTTGTTCCTGTTTCATTTCCAGTATAAACTCCTTTTGGACAGCTaGAAATGTAGTGATCTTCTT +
Preference number: 5 (lower is better)
Translates to: CTSKFKLFELFLFHFQYKLLLDS*KCSDLL
Trigger: AAGAAGATCACTACATTTCAAGCTGTCCAAAAGGAG...TTTATACTGGAAATGAAACAGGAACAACTCAAACAACTTAAACTTGGAGGTGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000228911.2
CDS CAA 72 bp CCTCTGATGGCTTCCCGCTCCTCTGCGGCTTCTTGTTaGGCAGTCTCAATGGTCTGCTTTCCTCCAGAGAGG +
Preference number: 6 (lower is better)
Translates to: PLMASRSSAASC*AVSMVCFPPER
Trigger: CCTCTCTGGAGGAAAGCAGACCATTGAGACTGCCAAACAAGAAGCCGCAGAGGAGCGGGAAGCCATCAGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS GCA 72 bp CAGTGTTGTGGGTATAGTGCTCCAGGGTCTTCTCGCTaGCGTAGTCCTCTAAGGGATCAGACCACAGCAGGT +
Preference number: 6 (lower is better)
Translates to: QCCGYSAPGSSR*RSPLRDQTTAG
Trigger: ACCTGCTGTGGTCTGATCCCTTAGAGGACTACGGCAGCGAGAAGACCCTGGAGCACTATACCCACAACACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS CAA 90 bp ATTGTAAAACCTCTGATGGCTTCCCGCTCCTCTGCGGCTTCTTGTTaGGCAGTCTCAATGGTCTGCTTTCCTCCAGAGAGGACCCCCAGT +
Preference number: 6 (lower is better)
Translates to: IVKPLMASRSSAASC*AVSMVCFPPERTPS
Trigger: ACTGGGGGTCCTCTCTGGAGGAAAGCAGACCATTGAGACTGCCAAACAAGAAGCCGCAGAGGAGCGGGAAGCCATCAGAGGTTTTACAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS CAA 90 bp TGCAATTGTAAAACCTCTGATGGCTTCCCGCTCCTCTGCGGCTTCTaGTTTGGCAGTCTCAATGGTCTGCTTTCCTCCAGAGAGGACCCC +
Preference number: 6 (lower is better)
Translates to: CNCKTSDGFPLLCGF*FGSLNGLLSSREDP
Trigger: GGGGTCCTCTCTGGAGGAAAGCAGACCATTGAGACTGCCAAACAAGAAGCCGCAGAGGAGCGGGAAGCCATCAGAGGTTTTACAATTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS CAA 72 bp AAAACCTCTGATGGCTTCCCGCTCCTCTGCGGCTTCTaGTTTGGCAGTCTCAATGGTCTGCTTTCCTCCAGA +
Preference number: 6 (lower is better)
Translates to: KTSDGFPLLCGF*FGSLNGLLSSR
Trigger: TCTGGAGGAAAGCAGACCATTGAGACTGCCAAACAAGAAGCCGCAGAGGAGCGGGAAGCCATCAGAGGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS GCA 72 bp TGCAATTGTAAAACCTCTGATGGCTTCCCGCTCCTCTaGGGCTTCTTGTTTGGCAGTCTCAATGGTCTGCTT +
Preference number: 6 (lower is better)
Translates to: CNCKTSDGFPLL*GFLFGSLNGLL
Trigger: AAGCAGACCATTGAGACTGCCAAACAAGAAGCCGCAGAGGAGCGGGAAGCCATCAGAGGTTTTACAATTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS CCA 72 bp GAGAAAATCGTAATAAGTGACGGAAAGCCAGTTGCTTaGTTCTTCCTATACATTCGGTACCCCGCATCCTGG +
Preference number: 6 (lower is better)
Translates to: EKIVISDGKPVA*FFLYIRYPASW
Trigger: CCAGGATGCGGGGTACCGAATGTATAGGAAGAACCAAGCAACTGGCTTTCCGTCACTTATTACGATTTTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS CAA 90 bp CAGTCGAAAGTGTGCATGCACGCATCGTACACCATCTCTGAATACTaGATCCGACATTCCTGTTTGAAGGTGAAGTACTCTGTAAGATGC +
Preference number: 6 (lower is better)
Translates to: QSKVCMHASYTISEY*IRHSCLKVKYSVRC
Trigger: GCATCTTACAGAGTACTTCACCTTCAAACAGGAATGTCGGATCAAGTATTCAGAGATGGTGTACGATGCGTGCATGCACACTTTCGACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS TCA 72 bp GTCGAAAGTGTGCATGCACGCATCGTACACCATCTCTaGATACTTGATCCGACATTCCTGTTTGAAGGTGAA +
Preference number: 6 (lower is better)
Translates to: VESVHARIVHHL*ILDPTFLFEGE
Trigger: TTCACCTTCAAACAGGAATGTCGGATCAAGTATTCAGAGATGGTGTACGATGCGTGCATGCACACTTTCGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS CAA 72 bp GTGTGCATGCACGCATCGTACACCATCTCTGAATACTaGATCCGACATTCCTGTTTGAAGGTGAAGTACTCT +
Preference number: 6 (lower is better)
Translates to: VCMHASYTISEY*IRHSCLKVKYS
Trigger: AGAGTACTTCACCTTCAAACAGGAATGTCGGATCAAGTATTCAGAGATGGTGTACGATGCGTGCATGCACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS TCA 72 bp TTGAAGGTGAAGTACTCTGTAAGATGCCTGCATTCATaGTTTCCTCGAAGCAGAAACAATGTTTTAGGATGG +
Preference number: 6 (lower is better)
Translates to: LKVKYSVRCLHS*FPRSRNNVLGW
Trigger: CCATCCTAAAACATTGTTTCTGCTTCGAGGAAATCATGAATGCAGGCATCTTACAGAGTACTTCACCTTCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078434.8
ENSMUST00000228911.2
CDS TCA 72 bp TTCTTTTCGACCTGTAGTAGCTCCTTTTGGACAGCTTaGAATGTAGTGATCTTCTTCATCGGTTACGTTCAT +
Preference number: 6 (lower is better)
Translates to: FFSTCSSSFWTA*NVVIFFIGYVH
Trigger: ATGAACGTAACCGATGAAGAAGATCACTACATTTCAAGCTGTCCAAAAGGAGCTACTACAGGTCGAAAAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000228911.2