RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PPP2R1A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000007564

Ensembl transcript IDs: ENSMUST00000007708.14, ENSMUST00000147983.3, ENSMUST00000173658.8

Found 115 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCCCAGCTTGGAGGCAGCGGCCCGCCGCACCATGGGGGTGTCATCTaGGCACAGGTTCCGGAAGTACTGTCGAAGTTCTGCCTTCACGGC +
Preference number: 1 (lower is better)
Translates to: PQLGGSGPPHHGGVI*AQVPEVLSKFCLHG
Trigger: GCCGTGAAGGCAGAACTTCGACAGTACTTCCGGAACCTGTGCTCAGATGACACCCCCATGGTGCGGCGGGCCGCTGCCTCCAAGCTGGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
3UTR GCA 90 bp GGCCTCCAGGTCCTCCTGTGGCAGAAGCTGGGCAATATTCACACATaGCTCCACTGCCAGCAGCCGCACCGAGTCCTGCTCGTCAGAGGC +
Preference number: 1 (lower is better)
Translates to: GLQVLLWQKLGNIHT*LHCQQPHRVLLVRG
Trigger: GCCTCTGACGAGCAGGACTCGGTGCGGCTGCTGGCAGTGGAGGCATGTGTGAATATTGCCCAGCTTCTGCCACAGGAGGACCTGGAGGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
3UTR GCA 90 bp GTCCTCCTGTGGCAGAAGCTGGGCAATATTCACACATGCCTCCACTaGCAGCAGCCGCACCGAGTCCTGCTCGTCAGAGGCCAGGTTAGA +
Preference number: 1 (lower is better)
Translates to: VLLWQKLGNIHTCLH*QQPHRVLLVRGQVR
Trigger: TCTAACCTGGCCTCTGACGAGCAGGACTCGGTGCGGCTGCTGGCAGTGGAGGCATGTGTGAATATTGCCCAGCTTCTGCCACAGGAGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
3UTR CCA 90 bp AAGGTGGGCATCACTAAGGCCTCCAGGTCCTCCTGTGGCAGAAGCTaGGCAATATTCACACATGCCTCCACTGCCAGCAGCCGCACCGAG +
Preference number: 1 (lower is better)
Translates to: KVGITKASRSSCGRS*AIFTHASTASSRTE
Trigger: CTCGGTGCGGCTGCTGGCAGTGGAGGCATGTGTGAATATTGCCCAGCTTCTGCCACAGGAGGACCTGGAGGCCTTAGTGATGCCCACCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
3UTR CCA 90 bp AGCACAGGTTCCGGAAGTACTGTCGAAGTTCTGCCTTCACGGCACTaGATACTCGGGGGTAGCAAACTGAGAAGAGACCACAGGCCGAGG +
Preference number: 1 (lower is better)
Translates to: STGSGSTVEVLPSRH*ILGGSKLRRDHRPR
Trigger: CCTCGGCCTGTGGTCTCTTCTCAGTTTGCTACCCCCGAGTATCCAGTGCCGTGAAGGCAGAACTTCGACAGTACTTCCGGAACCTGTGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
3UTR GCA 90 bp CAATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTaGAACAACTTGTACTGCTCCAGCCCCTTGGGAGGTGGACAGAGA +
Preference number: 1 (lower is better)
Translates to: QYGQEQPALLFRLLS*NNLYCSSPLGGGQR
Trigger: TCTCTGTCCACCTCCCAAGGGGCTGGAGCAGTACAAGTTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
3UTR GCA 90 bp ATCTCTCCCAATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTaGTGTCCTGCAACAACTTGTACTGCTCCAGCCCCTTGGGAGGTG +
Preference number: 1 (lower is better)
Translates to: ISPNMGRNNQPFFSG*CPATTCTAPAPWEV
Trigger: CACCTCCCAAGGGGCTGGAGCAGTACAAGTTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATTGGGAGAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
3UTR-3UTR TCA 90 bp TTGGCAAATTCCCCCAGCTTGGAGGCAGCGGCCCGCCGCACCATGGGGGTGTCATCGGGGGTAGCAAACTaGGAAGAGACCACAGGCCGA +
Preference number: 2 (lower is better)
Translates to: LANSPSLEAAARRTMGVSSGVAN*EETTGR
Trigger: TCGGCCTGTGGTCTCTTCTCAGTTTGCTACCCCCGA...TGACACCCCCATGGTGCGGCGGGCCGCTGCCTCCAAGCTGGGGGAATTTGCCAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
3UTR-3UTR CCA 90 bp TGTGGCAGAAGCTGGGCAATATTCACACATGCCTCCACTGCCAGCAGCCGCACCCAAATTCCCCCAGCTTaGAGGCAGCGGCCCGCCGCA +
Preference number: 2 (lower is better)
Translates to: CGRSWAIFTHASTASSRTQIPPA*RQRPAA
Trigger: TGCGGCGGGCCGCTGCCTCCAAGCTGGGGGAATTTG...GGTGCGGCTGCTGGCAGTGGAGGCATGTGTGAATATTGCCCAGCTTCTGCCACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
3UTR-3UTR CCA 90 bp GTCCCCATTACAGCAGCAAAAGCCAGTGACCTAGGATGCTCCCATCTCTCCCAAGCTGGGGGAGGAGCCTaGGGTCAGACCATGCACAGG +
Preference number: 2 (lower is better)
Translates to: VPITAAKASDLGCSHLSQAGGGA*GQTMHR
Trigger: CCTGTGCATGGTCTGACCCCAGGCTCCTCCCCCAGC...TTGGGAGAGATGGGAGCATCCTAGGTCACTGGCTTTTGCTGCTGTAATGGGGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
3UTR CAA 90 bp TCATTTGCCCCCACCACCTCCCTAAGGGAGGTAACTTTGTGGGGGTaGGAGGGTGGACACCAGAGGCCGGCAATGCTTCTTCTTCCAGCA +
Preference number: 2 (lower is better)
Translates to: SFAPTTSLREVTLWG*EGGHQRPAMLLLPA
Trigger: TGCTGGAAGAAGAAGCATTGCCGGCCTCTGGTGTCCACCCTCCAACCCCCACAAAGTTACCTCCCTTAGGGAGGTGGTGGGGGCAAATGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
3UTR-3UTR TCA 90 bp TGGCAGAAGCTGGGCAATATTCACACATGCCTCCACTGCCAGCAGCCGCACCGACATGGGGGTGTCATCTaGGCACAGGTTCCGGAAGTA +
Preference number: 2 (lower is better)
Translates to: WQKLGNIHTCLHCQQPHRHGGVI*AQVPEV
Trigger: TACTTCCGGAACCTGTGCTCAGATGACACCCCCATG...TCGGTGCGGCTGCTGGCAGTGGAGGCATGTGTGAATATTGCCCAGCTTCTGCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
3UTR-3UTR CCA 90 bp GTCGGCCACCATGTAGCGAACACGCCAAGACTTGTCCTCAGCAGCCTGTCGCAACCAGCTCCAGTACCTTaGCAAATTCCCCCAGCTTGG +
Preference number: 2 (lower is better)
Translates to: VGHHVANTPRLVLSSLSQPAPVP*QIPPAW
Trigger: CCAAGCTGGGGGAATTTGCCAAGGTACTGGAGCTGG...TTGCGACAGGCTGCTGAGGACAAGTCTTGGCGTGTTCGCTACATGGTGGCCGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
3UTR CAA 90 bp AACATGGGAATGATCTCACTCTTGACATTGTCCAGCTCCAGTACCTaGGCAAATTCCCCCAGCTTGGAGGCAGCGGCCCGCCGCACCATG +
Preference number: 2 (lower is better)
Translates to: NMGMISLLTLSSSST*ANSPSLEAAARRTM
Trigger: CATGGTGCGGCGGGCCGCTGCCTCCAAGCTGGGGGAATTTGCCAAGGTACTGGAGCTGGACAATGTCAAGAGTGAGATCATTCCCATGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
3UTR-3UTR GCA 90 bp ACATTGTCCAGCTCCAGTACCTTGGCAAATTCCCCCAGCTTGGAGGCAGCGGCCGTACTGTCGAAGTTCTaGCTTCACGGCACTGGATAC +
Preference number: 2 (lower is better)
Translates to: TLSSSSTLANSPSLEAAAVLSKF*LHGTGY
Trigger: GTATCCAGTGCCGTGAAGGCAGAACTTCGACAGTAC...GGCCGCTGCCTCCAAGCTGGGGGAATTTGCCAAGGTACTGGAGCTGGACAATGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
3UTR-3UTR GCA 90 bp CCCATCTCTCCCAATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTTGCAACAACTTGTACTaGTCCAGCCCCTTGGGAGGT +
Preference number: 2 (lower is better)
Translates to: PISPNMGRNNQPFFSGCCCNNLY*SSPLGG
Trigger: ACCTCCCAAGGGGCTGGAGCAGTACAAGTTGTTGCA...ACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATTGGGAGAGATGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
3UTR-3UTR CCA 90 bp TGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAACAACTTGTAAGGGAGGTAACTTTGTaGGGGTTGGAGGGTGGACAC +
Preference number: 2 (lower is better)
Translates to: WAGTTSPSFQAAVLQQLVREVTL*GLEGGH
Trigger: GTGTCCACCCTCCAACCCCCACAAAGTTACCTCCCT...TACAAGTTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
3UTR CAA 90 bp TCAGAGGCCAGGTTAGAGAACATGGGAATGATCTCACTCTTGACATaGTCCAGCTCCAGTACCTTGGCAAATTCCCCCAGCTTGGAGGCA +
Preference number: 2 (lower is better)
Translates to: SEARLENMGMISLLT*SSSSTLANSPSLEA
Trigger: TGCCTCCAAGCTGGGGGAATTTGCCAAGGTACTGGAGCTGGACAATGTCAAGAGTGAGATCATTCCCATGTTCTCTAACCTGGCCTCTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
3UTR-3UTR GCA 90 bp ATTACAGCAGCAAAAGCCAGTGACCTAGGATGCTCCCATCTCTCCCAATATGGGTTCAGGCTGCTGTCCTaGAACAACTTGTACTGCTCC +
Preference number: 2 (lower is better)
Translates to: ITAAKASDLGCSHLSQYGFRLLS*NNLYCS
Trigger: GGAGCAGTACAAGTTGTTGCAGGACAGCAGCCTGAA...CCCATATTGGGAGAGATGGGAGCATCCTAGGTCACTGGCTTTTGCTGCTGTAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
3UTR TCA 72 bp GGAGGCAGCGGCCCGCCGCACCATGGGGGTGTCATCTaGGCACAGGTTCCGGAAGTACTGTCGAAGTTCTGC +
Preference number: 3 (lower is better)
Translates to: GGSGPPHHGGVI*AQVPEVLSKFC
Trigger: GCAGAACTTCGACAGTACTTCCGGAACCTGTGCTCAGATGACACCCCCATGGTGCGGCGGGCCGCTGCCTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
3UTR CCA 72 bp TGTCCAGCTCCAGTACCTTGGCAAATTCCCCCAGCTTaGAGGCAGCGGCCCGCCGCACCATGGGGGTGTCAT +
Preference number: 3 (lower is better)
Translates to: CPAPVPWQIPPA*RQRPAAPWGCH
Trigger: ATGACACCCCCATGGTGCGGCGGGCCGCTGCCTCCAAGCTGGGGGAATTTGCCAAGGTACTGGAGCTGGACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
3UTR-3UTR CAA 90 bp GAGGAGGAACCGAACCGTGCTGGGGGAGGAGCCTGGGGTCAGACCATGCACAGGCTAAGGGAGGTAACTTaGTGGGGGTTGGAGGGTGGA +
Preference number: 3 (lower is better)
Translates to: EEEPNRAGGGAWGQTMHRLREVT*WGLEGG
Trigger: TCCACCCTCCAACCCCCACAAAGTTACCTCCCTTAG...CCTGTGCATGGTCTGACCCCAGGCTCCTCCCCCAGCACGGTTCGGTTCCTCCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
3UTR GCA 72 bp TGGCAGAAGCTGGGCAATATTCACACATGCCTCCACTaGCAGCAGCCGCACCGAGTCCTGCTCGTCAGAGGC +
Preference number: 3 (lower is better)
Translates to: WQKLGNIHTCLH*QQPHRVLLVRG
Trigger: GCCTCTGACGAGCAGGACTCGGTGCGGCTGCTGGCAGTGGAGGCATGTGTGAATATTGCCCAGCTTCTGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
3UTR GCA 72 bp GTCCTCCTGTGGCAGAAGCTGGGCAATATTCACACATaGCTCCACTGCCAGCAGCCGCACCGAGTCCTGCTC +
Preference number: 3 (lower is better)
Translates to: VLLWQKLGNIHT*LHCQQPHRVLL
Trigger: GAGCAGGACTCGGTGCGGCTGCTGGCAGTGGAGGCATGTGTGAATATTGCCCAGCTTCTGCCACAGGAGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
3UTR TCA 72 bp TGCCTTCACGGCACTGGATACTCGGGGGTAGCAAACTaGGAAGAGACCACAGGCCGAGGTGCGGGAGGTGAA +
Preference number: 3 (lower is better)
Translates to: CLHGTGYSGVAN*EETTGRGAGGE
Trigger: TTCACCTCCCGCACCTCGGCCTGTGGTCTCTTCTCAGTTTGCTACCCCCGAGTATCCAGTGCCGTGAAGGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
3UTR-3UTR CAA 90 bp CTCTCCCAATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCGTAACTTTGTGGGGGTaGGAGGGTGGACACCAGAGG +
Preference number: 3 (lower is better)
Translates to: LSQYGQEQPALLFRLLSCVTLWG*EGGHQR
Trigger: CCTCTGGTGTCCACCCTCCAACCCCCACAAAGTTAC...GCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATTGGGAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
3UTR-3UTR CAA 90 bp CTTGGTGATCTCAGGCCCCACTGCTTTCTGGAGCTCTGTGAACTTGTCGGCCACTCCAGCTCCAGTACCTaGGCAAATTCCCCCAGCTTG +
Preference number: 3 (lower is better)
Translates to: LGDLRPHCFLELCELVGHSSSST*ANSPSL
Trigger: CAAGCTGGGGGAATTTGCCAAGGTACTGGAGCTGGA...GTGGCCGACAAGTTCACAGAGCTCCAGAAAGCAGTGGGGCCTGAGATCACCAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
3UTR GCA 72 bp CTGGGGTCAGACCATGCACAGGGAGTGACAGTCATTTaGCCCCACCACCTCCCTAAGGGAGGTAACTTTGTG +
Preference number: 3 (lower is better)
Translates to: LGSDHAQGVTVI*PHHLPKGGNFV
Trigger: CACAAAGTTACCTCCCTTAGGGAGGTGGTGGGGGCAAATGACTGTCACTCCCTGTGCATGGTCTGACCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
3UTR GCA 72 bp AGGCACCAGATCTGTCTTGGTGATCTCAGGCCCCACTaGTTTCTGGAGCTCTGTGAACTTGTCGGCCACCAT +
Preference number: 3 (lower is better)
Translates to: RHQICLGDLRPH*FLELCELVGHH
Trigger: ATGGTGGCCGACAAGTTCACAGAGCTCCAGAAAGCAGTGGGGCCTGAGATCACCAAGACAGATCTGGTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
3UTR-3UTR CAA 90 bp CCAATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAACAATACTGCTCCAGCCCCTaGGGAGGTGGACAGAGAAGT +
Preference number: 3 (lower is better)
Translates to: PIWAGTTSPSFQAAVLQQYCSSP*GGGQRS
Trigger: ACTTCTCTGTCCACCTCCCAAGGGGCTGGAGCAGTA...TTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
3UTR CCA 72 bp TCCGGAAGTACTGTCGAAGTTCTGCCTTCACGGCACTaGATACTCGGGGGTAGCAAACTGAGAAGAGACCAC +
Preference number: 3 (lower is better)
Translates to: SGSTVEVLPSRH*ILGGSKLRRDH
Trigger: GTGGTCTCTTCTCAGTTTGCTACCCCCGAGTATCCAGTGCCGTGAAGGCAGAACTTCGACAGTACTTCCGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
3UTR-3UTR CAA 90 bp GTGATCTCAGGCCCCACTGCTTTCTGGAGCTCTGTGAACTTGTCGGCCACCATGATCTCACTCTTGACATaGTCCAGCTCCAGTACCTTG +
Preference number: 3 (lower is better)
Translates to: VISGPTAFWSSVNLSATMISLLT*SSSSTL
Trigger: CAAGGTACTGGAGCTGGACAATGTCAAGAGTGAGAT...CATGGTGGCCGACAAGTTCACAGAGCTCCAGAAAGCAGTGGGGCCTGAGATCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
3UTR GCA 72 bp AATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTaGTGTCCTGCAACAACTTGTACTGCTCCAGCCCCT +
Preference number: 3 (lower is better)
Translates to: NMGRNNQPFFSG*CPATTCTAPAP
Trigger: AGGGGCTGGAGCAGTACAAGTTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
3UTR CAA 72 bp TTGTCCAGCTCCAGTACCTTGGCAAATTCCCCCAGCTaGGAGGCAGCGGCCCGCCGCACCATGGGGGTGTCA +
Preference number: 4 (lower is better)
Translates to: LSSSSTLANSPS*EAAARRTMGVS
Trigger: TGACACCCCCATGGTGCGGCGGGCCGCTGCCTCCAAGCTGGGGGAATTTGCCAAGGTACTGGAGCTGGACAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
CDS-3UTR CCA 90 bp ACCTCCCTAAGGGAGGTAACTTTGTGGGGGTTGGAGGGTGGACACCAGAGGCCGCAAATTCCCCCAGCTTaGAGGCAGCGGCCCGCCGCA +
Preference number: 4 (lower is better)
Translates to: TSLREVTLWGLEGGHQRPQIPPA*RQRPAA
Trigger: TGCGGCGGGCCGCTGCCTCCAAGCTGGGGGAATTTG...CGGCCTCTGGTGTCCACCCTCCAACCCCCACAAAGTTACCTCCCTTAGGGAGGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR GCA 90 bp ATTTGCCCCCACCACCTCCCTAAGGGAGGTAACTTTGTGGGGGTTGGAGGGTGGCACACATGCCTCCACTaGCAGCAGCCGCACCGAGTC +
Preference number: 4 (lower is better)
Translates to: ICPHHLPKGGNFVGVGGWHTCLH*QQPHRV
Trigger: GACTCGGTGCGGCTGCTGGCAGTGGAGGCATGTGTG...CCACCCTCCAACCCCCACAAAGTTACCTCCCTTAGGGAGGTGGTGGGGGCAAAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CCA 90 bp ACCTCCCTAAGGGAGGTAACTTTGTGGGGGTTGGAGGGTGGACACCAGAGGCCGGCGGACATTGGCAACTaGGTCCCCTGCCATACGAAG +
Preference number: 4 (lower is better)
Translates to: TSLREVTLWGLEGGHQRPADIGN*VPCHTK
Trigger: CTTCGTATGGCAGGGGACCCAGTTGCCAATGTCCGC...CGGCCTCTGGTGTCCACCCTCCAACCCCCACAAAGTTACCTCCCTTAGGGAGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR GCA 90 bp ATCTCTCCCAATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGACCTTGTGGGAGGCTaGGGCCCTCACCTCGGCCTC +
Preference number: 4 (lower is better)
Translates to: ISPNMGRNNQPFFSGCCPDLVGG*GPHLGL
Trigger: GAGGCCGAGGTGAGGGCCGCAGCCTCCCACAAGGTC...AGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATTGGGAGAGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR TCA 90 bp GACCATGCACAGGGAGTGACAGTCATTTGCCCCCACCACCTCCCTAAGGGAGGTCATGGGGGTGTCATCTaGGCACAGGTTCCGGAAGTA +
Preference number: 4 (lower is better)
Translates to: DHAQGVTVICPHHLPKGGHGGVI*AQVPEV
Trigger: TACTTCCGGAACCTGTGCTCAGATGACACCCCCATG...ACCTCCCTTAGGGAGGTGGTGGGGGCAAATGACTGTCACTCCCTGTGCATGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR TCA 90 bp ACCTCCCTAAGGGAGGTAACTTTGTGGGGGTTGGAGGGTGGACACCAGAGGCCGCTCCCGGCAGTCAGCTaGGAGATTTTCACAGAACTC +
Preference number: 4 (lower is better)
Translates to: TSLREVTLWGLEGGHQRPLPAVS*EIFTEL
Trigger: GAGTTCTGTGAAAATCTCTCAGCTGACTGCCGGGAG...CGGCCTCTGGTGTCCACCCTCCAACCCCCACAAAGTTACCTCCCTTAGGGAGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR GCA 90 bp CTCTCCCAATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAGCCGCACCGAGTCCTaGTCGTCAGAGGCCAGGTTA +
Preference number: 4 (lower is better)
Translates to: LSQYGQEQPALLFRLLSCSRTES*SSEARL
Trigger: TAACCTGGCCTCTGACGAGCAGGACTCGGTGCGGCT...GCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATTGGGAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CCA 90 bp CTGGAAGGCAGGCACCAGATCTGTCTTGGTGATCTCAGGCCCCACTGCTTTCTGGCAGGAGCTCACTTCTaGTCCGTTCAACCCCAAGGG +
Preference number: 4 (lower is better)
Translates to: LEGRHQICLGDLRPHCFLAGAHF*SVQPQG
Trigger: CCCTTGGGGTTGAACGGACCAGAAGTGAGCTCCTGC...CAGAAAGCAGTGGGGCCTGAGATCACCAAGACAGATCTGGTGCCTGCCTTCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
CDS-3UTR TCA 90 bp CAGGCTGCTGTCCTGCAACAACTTGTACTGCTCCAGCCCCTTGGGAGGTGGACACTCCCACCAAAGTTGTaGAGGTTCCCAGCTGTTCAG +
Preference number: 4 (lower is better)
Translates to: QAAVLQQLVLLQPLGRWTLPPKL*RFPAVQ
Trigger: CTGAACAGCTGGGAACCTTCACAACTTTGGTGGGAG...TGTCCACCTCCCAAGGGGCTGGAGCAGTACAAGTTGTTGCAGGACAGCAGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR TCA 90 bp GCACAGGGAGTGACAGTCATTTGCCCCCACCACCTCCCTAAGGGAGGTAACTTTTCGGGGGTAGCAAACTaGGAAGAGACCACAGGCCGA +
Preference number: 4 (lower is better)
Translates to: AQGVTVICPHHLPKGGNFSGVAN*EETTGR
Trigger: TCGGCCTGTGGTCTCTTCTCAGTTTGCTACCCCCGA...AAAGTTACCTCCCTTAGGGAGGTGGTGGGGGCAAATGACTGTCACTCCCTGTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR TCA 90 bp ACCTCCCTAAGGGAGGTAACTTTGTGGGGGTTGGAGGGTGGACACCAGAGGCCGTCCTATCTTCTGGAGTaGCTTGGCCACATTGAAGCG +
Preference number: 4 (lower is better)
Translates to: TSLREVTLWGLEGGHQRPSYLLE*LGHIEA
Trigger: CGCTTCAATGTGGCCAAGTCACTCCAGAAGATAGGA...CGGCCTCTGGTGTCCACCCTCCAACCCCCACAAAGTTACCTCCCTTAGGGAGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CCA 90 bp GTGACAGTCATTTGCCCCCACCACCTCCCTAAGGGAGGTAACTTTGTGGGGGTTGCAGGAGCTCACTTCTaGTCCGTTCAACCCCAAGGG +
Preference number: 4 (lower is better)
Translates to: VTVICPHHLPKGGNFVGVAGAHF*SVQPQG
Trigger: CCCTTGGGGTTGAACGGACCAGAAGTGAGCTCCTGC...AACCCCCACAAAGTTACCTCCCTTAGGGAGGTGGTGGGGGCAAATGACTGTCAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
3UTR CAA 72 bp ATGATCTCACTCTTGACATTGTCCAGCTCCAGTACCTaGGCAAATTCCCCCAGCTTGGAGGCAGCGGCCCGC +
Preference number: 4 (lower is better)
Translates to: MISLLTLSSSST*ANSPSLEAAAR
Trigger: GCGGGCCGCTGCCTCCAAGCTGGGGGAATTTGCCAAGGTACTGGAGCTGGACAATGTCAAGAGTGAGATCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
CDS-3UTR TCA 90 bp TGGCAGAAGCTGGGCAATATTCACACATGCCTCCACTGCCAGCAGCCGCACCGACTATTGAGACGAAGCTaGACGTCCTCATTGCGGAGT +
Preference number: 4 (lower is better)
Translates to: WQKLGNIHTCLHCQQPHRLLRRS*TSSLRS
Trigger: ACTCCGCAATGAGGACGTTCAGCTTCGTCTCAATAG...TCGGTGCGGCTGCTGGCAGTGGAGGCATGTGTGAATATTGCCCAGCTTCTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
CDS-3UTR TCA 90 bp CAGGTCCTCCTGTGGCAGAAGCTGGGCAATATTCACACATGCCTCCACTGCCAGCTCCCACCAAAGTTGTaGAGGTTCCCAGCTGTTCAG +
Preference number: 4 (lower is better)
Translates to: QVLLWQKLGNIHTCLHCQLPPKL*RFPAVQ
Trigger: CTGAACAGCTGGGAACCTTCACAACTTTGGTGGGAG...CTGGCAGTGGAGGCATGTGTGAATATTGCCCAGCTTCTGCCACAGGAGGACCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
CDS-3UTR GCA 90 bp CCAATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAACAAGGTGGCAGCAGACAGTaGACATACTCAGGCCCTCCC +
Preference number: 4 (lower is better)
Translates to: PIWAGTTSPSFQAAVLQQGGSRQ*TYSGPP
Trigger: GGGAGGGCCTGAGTATGTGCACTGTCTGCTGCCACC...TTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR GCA 90 bp CAGGCTGCTGTCCTGCAACAACTTGTACTGCTCCAGCCCCTTGGGAGGTGGACAGTACTGTCGAAGTTCTaGCTTCACGGCACTGGATAC +
Preference number: 4 (lower is better)
Translates to: QAAVLQQLVLLQPLGRWTVLSKF*LHGTGY
Trigger: GTATCCAGTGCCGTGAAGGCAGAACTTCGACAGTAC...TGTCCACCTCCCAAGGGGCTGGAGCAGTACAAGTTGTTGCAGGACAGCAGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CCA 90 bp CAGGGAGTGACAGTCATTTGCCCCCACCACCTCCCTAAGGGAGGTAACTTTGTGCCAGCTCCAGTACCTTaGCAAATTCCCCCAGCTTGG +
Preference number: 4 (lower is better)
Translates to: QGVTVICPHHLPKGGNFVPAPVP*QIPPAW
Trigger: CCAAGCTGGGGGAATTTGCCAAGGTACTGGAGCTGG...CACAAAGTTACCTCCCTTAGGGAGGTGGTGGGGGCAAATGACTGTCACTCCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CCA 90 bp GACCATGCACAGGGAGTGACAGTCATTTGCCCCCACCACCTCCCTAAGGGAGGTTCCTGTGGCAGAAGCTaGGCAATATTCACACATGCC +
Preference number: 4 (lower is better)
Translates to: DHAQGVTVICPHHLPKGGSCGRS*AIFTHA
Trigger: GGCATGTGTGAATATTGCCCAGCTTCTGCCACAGGA...ACCTCCCTTAGGGAGGTGGTGGGGGCAAATGACTGTCACTCCCTGTGCATGGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR TCA 90 bp TGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAACAACTTGTAGAGGCATGTATTCAATaGTGGCCAGCCGCACTCGCC +
Preference number: 4 (lower is better)
Translates to: WAGTTSPSFQAAVLQQLVEACIQ*WPAALA
Trigger: GGCGAGTGCGGCTGGCCATCATTGAATACATGCCTC...TACAAGTTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR GCA 90 bp CAGGCTGCTGTCCTGCAACAACTTGTACTGCTCCAGCCCCTTGGGAGGTGGACAGGCTTGACTTCACTCTaGAGGGTGCTGTTATCAAGA +
Preference number: 4 (lower is better)
Translates to: QAAVLQQLVLLQPLGRWTGLTSL*RVLLSR
Trigger: TCTTGATAACAGCACCCTGCAGAGTGAAGTCAAGCC...TGTCCACCTCCCAAGGGGCTGGAGCAGTACAAGTTGTTGCAGGACAGCAGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CCA 90 bp TGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAACAACTTGTAAACTCTTTGACCTTGTaGGAGGCTGCGGCCCTCACC +
Preference number: 4 (lower is better)
Translates to: WAGTTSPSFQAAVLQQLVNSLTL*EAAALT
Trigger: GGTGAGGGCCGCAGCCTCCCACAAGGTCAAAGAGTT...TACAAGTTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CCA 90 bp TGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAACAACTTGTAGGGATGATAGTGGCATaGGCCCACTCCTTCCCGAAC +
Preference number: 4 (lower is better)
Translates to: WAGTTSPSFQAAVLQQLVGMIVA*AHSFPN
Trigger: GTTCGGGAAGGAGTGGGCCCATGCCACTATCATCCC...TACAAGTTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR TCA 90 bp CTCTCCCAATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCCTATTGAGACGAAGCTaGACGTCCTCATTGCGGAGT +
Preference number: 4 (lower is better)
Translates to: LSQYGQEQPALLFRLLSCLLRRS*TSSLRS
Trigger: ACTCCGCAATGAGGACGTTCAGCTTCGTCTCAATAG...GCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATTGGGAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR TCA 90 bp GTGACAGTCATTTGCCCCCACCACCTCCCTAAGGGAGGTAACTTTGTGGGGGTTGCAAGATCTGAGTCATaGTCACATTCTCCCGGCAGT +
Preference number: 4 (lower is better)
Translates to: VTVICPHHLPKGGNFVGVARSES*SHSPGS
Trigger: ACTGCCGGGAGAATGTGATCATGACTCAGATCTTGC...AACCCCCACAAAGTTACCTCCCTTAGGGAGGTGGTGGGGGCAAATGACTGTCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR TCA 90 bp CAGGGAGTGACAGTCATTTGCCCCCACCACCTCCCTAAGGGAGGTAACTTTGTGAAGCCAGTGCTGACTTaGCATGTTGGTTGGCATCTG +
Preference number: 4 (lower is better)
Translates to: QGVTVICPHHLPKGGNFVKPVLT*HVGWHL
Trigger: CAGATGCCAACCAACATGTCAAGTCAGCACTGGCTT...CACAAAGTTACCTCCCTTAGGGAGGTGGTGGGGGCAAATGACTGTCACTCCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR TCA 90 bp CCCATCTCTCCCAATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTACTGAGAGAGCTGCCTaGTGCCAATCACCTCGTTCA +
Preference number: 4 (lower is better)
Translates to: PISPNMGRNNQPFFSGCCTERAA*CQSPRS
Trigger: TGAACGAGGTGATTGGCATCAGGCAGCTCTCTCAGT...ACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATTGGGAGAGATGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR GCA 90 bp CCAATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAACAAGGCAATATTCACACATaGCTCCACTGCCAGCAGCCG +
Preference number: 4 (lower is better)
Translates to: PIWAGTTSPSFQAAVLQQGNIHT*LHCQQP
Trigger: CGGCTGCTGGCAGTGGAGGCATGTGTGAATATTGCC...TTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR GCA 90 bp CCCATCTCTCCCAATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCGATGGTGTTGTCTTTaGCCAGAATGGGAGAGAGGC +
Preference number: 4 (lower is better)
Translates to: PISPNMGRNNQPFFSGCCRWCCL*PEWERG
Trigger: GCCTCTCTCCCATTCTGGGCAAAGACAACACCATCG...ACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATTGGGAGAGATGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CCA 90 bp CCCATCTCTCCCAATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCATACGAAGAACTGTaGGCAGCATGTGCTTGGTGG +
Preference number: 4 (lower is better)
Translates to: PISPNMGRNNQPFFSGCCPYEEL*AACAWW
Trigger: CCACCAAGCACATGCTGCCCACAGTTCTTCGTATGG...ACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATTGGGAGAGATGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CCA 90 bp CCCATCTCTCCCAATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTTTGACATCCACATCCTaGTCCTGGGTCAGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: PISPNMGRNNQPFFSGCCLTSTS*SWVSFS
Trigger: GGAGAAGCTGACCCAGGACCAGGATGTGGATGTCAA...ACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATTGGGAGAGATGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR TCA 90 bp AATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAACAACTGAAGGTGAGTGCTCATaGGAGATGGCCCGCAAGGAT +
Preference number: 4 (lower is better)
Translates to: NMGRNNQPFFSGCCPATTEGECS*EMARKD
Trigger: ATCCTTGCGGGCCATCTCTCATGAGCACTCACCTTC...AGTTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR TCA 90 bp TGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAACAACTTGTATTTCACAGAACTCTTTaGCCTTGTGGGAGGCTGCGG +
Preference number: 4 (lower is better)
Translates to: WAGTTSPSFQAAVLQQLVFHRTL*PCGRLR
Trigger: CCGCAGCCTCCCACAAGGTCAAAGAGTTCTGTGAAA...TACAAGTTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR TCA 90 bp GCACAGGGAGTGACAGTCATTTGCCCCCACCACCTCCCTAAGGGAGGTAACTTTATGCAGGGCAAGATCTaGGTCATGATCACATTCTCC +
Preference number: 4 (lower is better)
Translates to: AQGVTVICPHHLPKGGNFMQGKI*VMITFS
Trigger: GGAGAATGTGATCATGACTCAGATCTTGCCCTGCAT...AAAGTTACCTCCCTTAGGGAGGTGGTGGGGGCAAATGACTGTCACTCCCTGTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR TCA 90 bp TGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAACAACTTGTACTGACACAAGCTCCTTaGTGCAGGGCAAGATCTGAG +
Preference number: 4 (lower is better)
Translates to: WAGTTSPSFQAAVLQQLVLTQAP*CRARSE
Trigger: CTCAGATCTTGCCCTGCATCAAGGAGCTTGTGTCAG...TACAAGTTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR TCA 90 bp GCACAGGGAGTGACAGTCATTTGCCCCCACCACCTCCCTAAGGGAGGTAACTTTATGTTGGTTGGCATCTaGCACAAGCTCCTTGATGCA +
Preference number: 4 (lower is better)
Translates to: AQGVTVICPHHLPKGGNFMLVGI*HKLLDA
Trigger: TGCATCAAGGAGCTTGTGTCAGATGCCAACCAACAT...AAAGTTACCTCCCTTAGGGAGGTGGTGGGGGCAAATGACTGTCACTCCCTGTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR TCA 90 bp AATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAACAACTCACTCATCCTTCAGCTaGGCCAAGAACAGGGGCAAG +
Preference number: 4 (lower is better)
Translates to: NMGRNNQPFFSGCCPATTHSSFS*AKNRGK
Trigger: CTTGCCCCTGTTCTTGGCTCAGCTGAAGGATGAGTG...AGTTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR TCA 90 bp TGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAACAACTTGTAGCATGTGCTTGGTGGTaGTATCCTGTCCACAGACCT +
Preference number: 4 (lower is better)
Translates to: WAGTTSPSFQAAVLQQLVACAWW*YPVHRP
Trigger: AGGTCTGTGGACAGGATATCACCACCAAGCACATGC...TACAAGTTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR GCA 90 bp CCAATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAACAAGATCTCAGGCCCCACTaGTTTCTGGAGCTCTGTGAA +
Preference number: 4 (lower is better)
Translates to: PIWAGTTSPSFQAAVLQQDLRPH*FLELCE
Trigger: TTCACAGAGCTCCAGAAAGCAGTGGGGCCTGAGATC...TTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CCA 90 bp AATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAACAACTCTGCCTTCACGGCACTaGATACTCGGGGGTAGCAAA +
Preference number: 4 (lower is better)
Translates to: NMGRNNQPFFSGCCPATTLPSRH*ILGGSK
Trigger: TTTGCTACCCCCGAGTATCCAGTGCCGTGAAGGCAG...AGTTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CCA 90 bp GTGACAGTCATTTGCCCCCACCACCTCCCTAAGGGAGGTAACTTTGTGGGGGTTGCAAGAGGTGTTCGATaGTGTTGTCTTTGCCCAGAA +
Preference number: 4 (lower is better)
Translates to: VTVICPHHLPKGGNFVGVARGVR*CCLCPE
Trigger: TTCTGGGCAAAGACAACACCATCGAACACCTCTTGC...AACCCCCACAAAGTTACCTCCCTTAGGGAGGTGGTGGGGGCAAATGACTGTCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CCA 90 bp ATTACAGCAGCAAAAGCCAGTGACCTAGGATGCTCCCATCTCTCCCAATATGGGCAGCTAGTTCCACGATaGCAGGAAGCAGGGACTGAG +
Preference number: 4 (lower is better)
Translates to: ITAAKASDLGCSHLSQYGQLVPR*QEAGTE
Trigger: CTCAGTCCCTGCTTCCTGCCATCGTGGAACTAGCTG...CCCATATTGGGAGAGATGGGAGCATCCTAGGTCACTGGCTTTTGCTGCTGTAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CCA 90 bp ATCTCTCCCAATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTACAGTCAGAGCCTCCTaGGCAAAGTACTTGACATCC +
Preference number: 4 (lower is better)
Translates to: ISPNMGRNNQPFFSGCCPTVRAS*AKYLTS
Trigger: GGATGTCAAGTACTTTGCCCAGGAGGCTCTGACTGT...AGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATTGGGAGAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CCA 90 bp ATCTCTCCCAATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCTGACTTGACATGTTaGTTGGCATCTGACACAAGC +
Preference number: 4 (lower is better)
Translates to: ISPNMGRNNQPFFSGCCPADLTC*LASDTS
Trigger: GCTTGTGTCAGATGCCAACCAACATGTCAAGTCAGC...AGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATTGGGAGAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CCA 90 bp TGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAACAACTTGTAATGGGTCCTATCTTCTaGAGTGACTTGGCCACATTG +
Preference number: 4 (lower is better)
Translates to: WAGTTSPSFQAAVLQQLVMGPIF*SDLATL
Trigger: CAATGTGGCCAAGTCACTCCAGAAGATAGGACCCAT...TACAAGTTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CAA 90 bp ATCTCTCCCAATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAAATTCCCCCAGCTaGGAGGCAGCGGCCCGCCGC +
Preference number: 5 (lower is better)
Translates to: ISPNMGRNNQPFFSGCCPANSPS*EAAARR
Trigger: GCGGCGGGCCGCTGCCTCCAAGCTGGGGGAATTTGC...AGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATTGGGAGAGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CAA 90 bp ATTTGCCCCCACCACCTCCCTAAGGGAGGTAACTTTGTGGGGGTTGGAGGGTGGCAGAACTCTTTGACCTaGTGGGAGGCTGCGGCCCTC +
Preference number: 5 (lower is better)
Translates to: ICPHHLPKGGNFVGVGGWQNSLT*WEAAAL
Trigger: GAGGGCCGCAGCCTCCCACAAGGTCAAAGAGTTCTG...CCACCCTCCAACCCCCACAAAGTTACCTCCCTTAGGGAGGTGGTGGGGGCAAAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CAA 90 bp GAGGAGGAACCGAACCGTGCTGGGGGAGGAGCCTGGGGTCAGACCATGCACAGGGACTTGACATGTTGGTaGGCATCTGACACAAGCTCC +
Preference number: 5 (lower is better)
Translates to: EEEPNRAGGGAWGQTMHRDLTCW*ASDTSS
Trigger: GGAGCTTGTGTCAGATGCCAACCAACATGTCAAGTC...CCTGTGCATGGTCTGACCCCAGGCTCCTCCCCCAGCACGGTTCGGTTCCTCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CAA 90 bp GAGGAGGAACCGAACCGTGCTGGGGGAGGAGCCTGGGGTCAGACCATGCACAGGGAAGCCAGTGCTGACTaGACATGTTGGTTGGCATCT +
Preference number: 5 (lower is better)
Translates to: EEEPNRAGGGAWGQTMHREASAD*TCWLAS
Trigger: AGATGCCAACCAACATGTCAAGTCAGCACTGGCTTC...CCTGTGCATGGTCTGACCCCAGGCTCCTCCCCCAGCACGGTTCGGTTCCTCCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CAA 90 bp ACCTCCCTAAGGGAGGTAACTTTGTGGGGGTTGGAGGGTGGACACCAGAGGCCGTTCTCCAGGATGGGCTaGACTTCACTCTGCAGGGTG +
Preference number: 5 (lower is better)
Translates to: TSLREVTLWGLEGGHQRPFSRMG*TSLCRV
Trigger: CACCCTGCAGAGTGAAGTCAAGCCCATCCTGGAGAA...CGGCCTCTGGTGTCCACCCTCCAACCCCCACAAAGTTACCTCCCTTAGGGAGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CAA 90 bp ACCTCCCTAAGGGAGGTAACTTTGTGGGGGTTGGAGGGTGGACACCAGAGGCCGTCCTGGGCAAAGTACTaGACATCCACATCCTGGTCC +
Preference number: 5 (lower is better)
Translates to: TSLREVTLWGLEGGHQRPSWAKY*TSTSWS
Trigger: GGACCAGGATGTGGATGTCAAGTACTTTGCCCAGGA...CGGCCTCTGGTGTCCACCCTCCAACCCCCACAAAGTTACCTCCCTTAGGGAGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS CCA 90 bp GTCAGAGCCTCCTGGGCAAAGTACTTGACATCCACATCCTGGTCCTaGGTCAGCTTCTCCAGGATGGGCTTGACTTCACTCTGCAGGGTG +
Preference number: 5 (lower is better)
Translates to: VRASWAKYLTSTSWS*VSFSRMGLTSLCRV
Trigger: CACCCTGCAGAGTGAAGTCAAGCCCATCCTGGAGAAGCTGACCCAGGACCAGGATGTGGATGTCAAGTACTTTGCCCAGGAGGCTCTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CAA 90 bp GACCATGCACAGGGAGTGACAGTCATTTGCCCCCACCACCTCCCTAAGGGAGGTTCGATGGTGTTGTCTTaGCCCAGAATGGGAGAGAGG +
Preference number: 5 (lower is better)
Translates to: DHAQGVTVICPHHLPKGGSMVLS*PRMGER
Trigger: CCTCTCTCCCATTCTGGGCAAAGACAACACCATCGA...ACCTCCCTTAGGGAGGTGGTGGGGGCAAATGACTGTCACTCCCTGTGCATGGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS CCA 90 bp GCAAGGATTCTACCGCCTTGTCTCGCACTACTGTCTCTTCCACTGTaGCCAGTGACTCAAGGGGTGGCAGCAGACAGTGCACATACTCAG +
Preference number: 5 (lower is better)
Translates to: ARILPPCLALLSLPL*PVTQGVAADSAHTQ
Trigger: CTGAGTATGTGCACTGTCTGCTGCCACCCCTTGAGTCACTGGCCACAGTGGAAGAGACAGTAGTGCGAGACAAGGCGGTAGAATCCTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CAA 90 bp GTCCCCATTACAGCAGCAAAAGCCAGTGACCTAGGATGCTCCCATCTCTCCCAAAGCCGCACTCGCCACTaGGCATCTTCAGCTAGTTCC +
Preference number: 5 (lower is better)
Translates to: VPITAAKASDLGCSHLSQSRTRH*ASSASS
Trigger: GGAACTAGCTGAAGATGCCAAGTGGCGAGTGCGGCT...TTGGGAGAGATGGGAGCATCCTAGGTCACTGGCTTTTGCTGCTGTAATGGGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS CCA 90 bp AGAACAGTCAGAGCCTCCTGGGCAAAGTACTTGACATCCACATCCTaGTCCTGGGTCAGCTTCTCCAGGATGGGCTTGACTTCACTCTGC +
Preference number: 5 (lower is better)
Translates to: RTVRASWAKYLTSTS*SWVSFSRMGLTSLC
Trigger: GCAGAGTGAAGTCAAGCCCATCCTGGAGAAGCTGACCCAGGACCAGGATGTGGATGTCAAGTACTTTGCCCAGGAGGCTCTGACTGTTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CAA 90 bp ACCTCCCTAAGGGAGGTAACTTTGTGGGGGTTGGAGGGTGGACACCAGAGGCCGACCTCAGACAACACATaGATGCAGAAGAGTGTAGTC +
Preference number: 5 (lower is better)
Translates to: TSLREVTLWGLEGGHQRPTSDNT*MQKSVV
Trigger: GACTACACTCTTCTGCATCAATGTGTTGTCTGAGGT...CGGCCTCTGGTGTCCACCCTCCAACCCCCACAAAGTTACCTCCCTTAGGGAGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS GCA 90 bp TTGGCAACTGGGTCCCCTGCCATACGAAGAACTGTGGGCAGCATGTaGTTGGTGGTGATATCCTGTCCACAGACCTCAGACAACACATTG +
Preference number: 5 (lower is better)
Translates to: LATGSPAIRRTVGSM*LVVISCPQTSDNTL
Trigger: CAATGTGTTGTCTGAGGTCTGTGGACAGGATATCACCACCAAGCACATGCTGCCCACAGTTCTTCGTATGGCAGGGGACCCAGTTGCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CAA 90 bp CTCTCCCAATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAGGTGTTCGATGGTGTaGTCTTTGCCCAGAATGGGA +
Preference number: 5 (lower is better)
Translates to: LSQYGQEQPALLFRLLSCRCSMV*SLPRMG
Trigger: TCCCATTCTGGGCAAAGACAACACCATCGAACACCT...GCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATTGGGAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CAA 90 bp GACCATGCACAGGGAGTGACAGTCATTTGCCCCCACCACCTCCCTAAGGGAGGTTTCACACAATCCAGGTaGGAGATGATATTCAGTCGG +
Preference number: 5 (lower is better)
Translates to: DHAQGVTVICPHHLPKGGFTQSR*EMIFSR
Trigger: CCGACTGAATATCATCTCCAACCTGGATTGTGTGAA...ACCTCCCTTAGGGAGGTGGTGGGGGCAAATGACTGTCACTCCCTGTGCATGGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CAA 90 bp CTCTCCCAATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCACTAATTTCTTAAGGTaGCTGGTGGCAGCCTCACGG +
Preference number: 5 (lower is better)
Translates to: LSQYGQEQPALLFRLLSCTNFLR*LVAASR
Trigger: CCGTGAGGCTGCCACCAGCAACCTTAAGAAATTAGT...GCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATTGGGAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CAA 90 bp AATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAACAACTTCCAGCTCCAGTACCTaGGCAAATTCCCCCAGCTTG +
Preference number: 5 (lower is better)
Translates to: NMGRNNQPFFSGCCPATTSSSST*ANSPSL
Trigger: CAAGCTGGGGGAATTTGCCAAGGTACTGGAGCTGGA...AGTTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CAA 90 bp CCCATCTCTCCCAATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTTTTTCACAGAACTCTTaGACCTTGTGGGAGGCTGCG +
Preference number: 5 (lower is better)
Translates to: PISPNMGRNNQPFFSGCCFSQNS*TLWEAA
Trigger: CGCAGCCTCCCACAAGGTCAAAGAGTTCTGTGAAAA...ACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATTGGGAGAGATGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CAA 90 bp CCTCCAGGTCCTCCTGTGGCAGAAGCTGGGCAATATTCACACATGCCTCCACTGATTGTGGAGAGCTTCTaGATACTATTGAGACGAAGC +
Preference number: 5 (lower is better)
Translates to: PPGPPVAEAGQYSHMPPLIVESF*ILLRRS
Trigger: GCTTCGTCTCAATAGTATCAAGAAGCTCTCCACAAT...CAGTGGAGGCATGTGTGAATATTGCCCAGCTTCTGCCACAGGAGGACCTGGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173658.8
CDS-3UTR CAA 90 bp TGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAACAACTTGTAGGAATGATCTCACTCTaGACATTGTCCAGCTCCAGT +
Preference number: 5 (lower is better)
Translates to: WAGTTSPSFQAAVLQQLVGMISL*TLSSSS
Trigger: ACTGGAGCTGGACAATGTCAAGAGTGAGATCATTCC...TACAAGTTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CAA 90 bp AATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAACAACTAGTGACTTGGCCACATaGAAGCGGACATTGGCAACT +
Preference number: 5 (lower is better)
Translates to: NMGRNNQPFFSGCCPATTSDLAT*KRTLAT
Trigger: AGTTGCCAATGTCCGCTTCAATGTGGCCAAGTCACT...AGTTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS CCA 90 bp TTAGGGTCTCCAGACATGGCTAAGACCTTGGGGATGATAGTGGCATaGGCCCACTCCTTCCCGAACTTCTCTACTAATTTCTTAAGGTTG +
Preference number: 5 (lower is better)
Translates to: LGSPDMAKTLGMIVA*AHSFPNFSTNFLRL
Trigger: CAACCTTAAGAAATTAGTAGAGAAGTTCGGGAAGGAGTGGGCCCATGCCACTATCATCCCCAAGGTCTTAGCCATGTCTGGAGACCCTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CAA 90 bp GTCCCCATTACAGCAGCAAAAGCCAGTGACCTAGGATGCTCCCATCTCTCCCAAATTGTGGAGAGCTTCTaGATACTATTGAGACGAAGC +
Preference number: 5 (lower is better)
Translates to: VPITAAKASDLGCSHLSQIVESF*ILLRRS
Trigger: GCTTCGTCTCAATAGTATCAAGAAGCTCTCCACAAT...TTGGGAGAGATGGGAGCATCCTAGGTCACTGGCTTTTGCTGCTGTAATGGGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS-3UTR CAA 90 bp AATATGGGCAGGAACAACCAGCCCTTCTTTTCAGGCTGCTGTCCTGCAACAACTATCTCACTCTTGACATaGTCCAGCTCCAGTACCTTG +
Preference number: 5 (lower is better)
Translates to: NMGRNNQPFFSGCCPATTISLLT*SSSSTL
Trigger: CAAGGTACTGGAGCTGGACAATGTCAAGAGTGAGAT...AGTTGTTGCAGGACAGCAGCCTGAAAAGAAGGGCTGGTTGTTCCTGCCCATATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS CCA 72 bp CTACCGCCTTGTCTCGCACTACTGTCTCTTCCACTGTaGCCAGTGACTCAAGGGGTGGCAGCAGACAGTGCA +
Preference number: 6 (lower is better)
Translates to: LPPCLALLSLPL*PVTQGVAADSA
Trigger: TGCACTGTCTGCTGCCACCCCTTGAGTCACTGGCCACAGTGGAAGAGACAGTAGTGCGAGACAAGGCGGTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS GCA 72 bp GAGATTTTCACAGAACTCTTTGACCTTGTGGGAGGCTaGGGCCCTCACCTCGGCCTCACAGTCCTTCATCAG +
Preference number: 6 (lower is better)
Translates to: EIFTELFDLVGG*GPHLGLTVLHQ
Trigger: CTGATGAAGGACTGTGAGGCCGAGGTGAGGGCCGCAGCCTCCCACAAGGTCAAAGAGTTCTGTGAAAATCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS CAA 90 bp CCCAGAATGGGAGAGAGGCCCATGATGACTGAAGCCAGTGCTGACTaGACATGTTGGTTGGCATCTGACACAAGCTCCTTGATGCAGGGC +
Preference number: 6 (lower is better)
Translates to: PRMGERPMMTEASAD*TCWLASDTSSLMQG
Trigger: GCCCTGCATCAAGGAGCTTGTGTCAGATGCCAACCAACATGTCAAGTCAGCACTGGCTTCAGTCATCATGGGCCTCTCTCCCATTCTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007708.14
ENSMUST00000147983.3
CDS CAA 72 bp TCCCCTGCCATACGAAGAACTGTGGGCAGCATGTGCTaGGTGGTGATATCCTGTCCACAGACCTCAGACAAC +
Preference number: 6 (lower is better)
Translates to: SPAIRRTVGSMC*VVISCPQTSDN
Trigger: GTTGTCTGAGGTCTGTGGACAGGATATCACCACCAAGCACATGCTGCCCACAGTTCTTCGTATGGCAGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS CAA 90 bp GCAACTGGGTCCCCTGCCATACGAAGAACTGTGGGCAGCATGTGCTaGGTGGTGATATCCTGTCCACAGACCTCAGACAACACATTGATG +
Preference number: 6 (lower is better)
Translates to: ATGSPAIRRTVGSMC*VVISCPQTSDNTLM
Trigger: CATCAATGTGTTGTCTGAGGTCTGTGGACAGGATATCACCACCAAGCACATGCTGCCCACAGTTCTTCGTATGGCAGGGGACCCAGTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS TCA 72 bp GCATCTGACACAAGCTCCTTGATGCAGGGCAAGATCTaGGTCATGATCACATTCTCCCGGCAGTCAGCTGAG +
Preference number: 6 (lower is better)
Translates to: ASDTSSLMQGKI*VMITFSRQSAE
Trigger: CTCAGCTGACTGCCGGGAGAATGTGATCATGACTCAGATCTTGCCCTGCATCAAGGAGCTTGTGTCAGATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007708.14
ENSMUST00000147983.3
CDS CCA 72 bp CCCATGATGACTGAAGCCAGTGCTGACTTGACATGTTaGTTGGCATCTGACACAAGCTCCTTGATGCAGGGC +
Preference number: 6 (lower is better)
Translates to: PMMTEASADLTC*LASDTSSLMQG
Trigger: GCCCTGCATCAAGGAGCTTGTGTCAGATGCCAACCAACATGTCAAGTCAGCACTGGCTTCAGTCATCATGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000007708.14
ENSMUST00000147983.3
CDS CAA 72 bp AGAATGGGTCCTATCTTCTGGAGTGACTTGGCCACATaGAAGCGGACATTGGCAACTGGGTCCCCTGCCATA +
Preference number: 6 (lower is better)
Translates to: RMGPIFWSDLAT*KRTLATGSPAI
Trigger: TATGGCAGGGGACCCAGTTGCCAATGTCCGCTTCAATGTGGCCAAGTCACTCCAGAAGATAGGACCCATTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS GCA 72 bp TGGGTCAGCTTCTCCAGGATGGGCTTGACTTCACTCTaGAGGGTGCTGTTATCAAGAATGGGTCCTATCTTC +
Preference number: 6 (lower is better)
Translates to: WVSFSRMGLTSL*RVLLSRMGPIF
Trigger: GAAGATAGGACCCATTCTTGATAACAGCACCCTGCAGAGTGAAGTCAAGCCCATCCTGGAGAAGCTGACCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS CCA 72 bp CCAGACATGGCTAAGACCTTGGGGATGATAGTGGCATaGGCCCACTCCTTCCCGAACTTCTCTACTAATTTC +
Preference number: 6 (lower is better)
Translates to: PDMAKTLGMIVA*AHSFPNFSTNF
Trigger: GAAATTAGTAGAGAAGTTCGGGAAGGAGTGGGCCCATGCCACTATCATCCCCAAGGTCTTAGCCATGTCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS CAA 90 bp CTGTTATCAAGAATGGGTCCTATCTTCTGGAGTGACTTGGCCACATaGAAGCGGACATTGGCAACTGGGTCCCCTGCCATACGAAGAACT +
Preference number: 6 (lower is better)
Translates to: LLSRMGPIFWSDLAT*KRTLATGSPAIRRT
Trigger: AGTTCTTCGTATGGCAGGGGACCCAGTTGCCAATGTCCGCTTCAATGTGGCCAAGTCACTCCAGAAGATAGGACCCATTCTTGATAACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14
CDS TCA 72 bp TGCCAATCACCTCGTTCACACAATCCAGGTTGGAGATaGTATTCAGTCGGACTTCAGGACACTCATCCTTCA +
Preference number: 6 (lower is better)
Translates to: CQSPRSHNPGWR*YSVGLQDTHPS
Trigger: TGAAGGATGAGTGTCCTGAAGTCCGACTGAATATCATCTCCAACCTGGATTGTGTGAACGAGGTGATTGGCA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000007708.14