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Pregenerated sensors for PPP2CB (Mus musculus)

Ensembl gene IDs: ENSMUSG00000009630

Ensembl transcript IDs: ENSMUST00000009774.11

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp GCAGGCTGTGGGCTGACTCATCTACAACAGTGTGCTAGAGTTCACATTGTGCTAGCACGTTTTGGTCCATaGTGTGTTTTAATGTCAAGA +
Preference number: 2 (lower is better)
Translates to: AGCGLTHLQQCARVHIVLARFGP*CVLMSR
Trigger: TCTTGACATTAAAACACATCATGGACCAAAACGTGC...TAGCACAATGTGAACTCTAGCACACTGTTGTAGATGAGTCAGCCCACAGCCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000009774.11
CDS-3UTR TCA 90 bp GCAGGCTGTGGGCTGACTCATCTACAACAGTGTGCTAGAGTTCACATTGTGCTAGTGCGCCGGGTCACATaGGGCTCTCCACGACGAGGT +
Preference number: 4 (lower is better)
Translates to: AGCGLTHLQQCARVHIVLVRRVT*GSPRRG
Trigger: ACCTCGTCGTGGAGAGCCTCATGTGACCCGGCGCAC...TAGCACAATGTGAACTCTAGCACACTGTTGTAGATGAGTCAGCCCACAGCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000009774.11
CDS-3UTR CCA 90 bp GCAGGCTGTGGGCTGACTCATCTACAACAGTGTGCTAGAGTTCACATTGTGCTAGTAGCCAGCACCACGTaGAGAAATGCCCCAGCCGCC +
Preference number: 4 (lower is better)
Translates to: AGCGLTHLQQCARVHIVLVASTT*RNAPAA
Trigger: GGCGGCTGGGGCATTTCTCCACGTGGTGCTGGCTAC...TAGCACAATGTGAACTCTAGCACACTGTTGTAGATGAGTCAGCCCACAGCCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000009774.11
CDS-3UTR CCA 90 bp GCAGGCTGTGGGCTGACTCATCTACAACAGTGTGCTAGAGTTCACATTGTGCTACACAGCGTCCGCACTTaGTTCTCGTTCAGCTGCTTA +
Preference number: 4 (lower is better)
Translates to: AGCGLTHLQQCARVHIVLHSVRT*FSFSCL
Trigger: TAAGCAGCTGAACGAGAACCAAGTGCGGACGCTGTG...TAGCACAATGTGAACTCTAGCACACTGTTGTAGATGAGTCAGCCCACAGCCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000009774.11
CDS-3UTR TCA 90 bp GCAGGCTGTGGGCTGACTCATCTACAACAGTGTGCTAGAGTTCACATTGTGCTAAGCCATACACTTGTGTaGTCTGCCGGCTTTCGTGAT +
Preference number: 4 (lower is better)
Translates to: AGCGLTHLQQCARVHIVLSHTLV*SAGFRD
Trigger: ATCACGAAAGCCGGCAGATCACACAAGTGTATGGCT...TAGCACAATGTGAACTCTAGCACACTGTTGTAGATGAGTCAGCCCACAGCCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000009774.11
CDS-3UTR GCA 90 bp GCAGGCTGTGGGCTGACTCATCTACAACAGTGTGCTAGAGTTCACATTGTGCTATGGTTCTCGTTCAGCTaGTTACACTCGTTCAGCTGC +
Preference number: 4 (lower is better)
Translates to: AGCGLTHLQQCARVHIVLWFSFS*LHSFSC
Trigger: GCAGCTGAACGAGTGTAAGCAGCTGAACGAGAACCA...TAGCACAATGTGAACTCTAGCACACTGTTGTAGATGAGTCAGCCCACAGCCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000009774.11
CDS-3UTR GCA 90 bp GCAGGCTGTGGGCTGACTCATCTACAACAGTGTGCTAGAGTTCACATTGTGCTACTCTCCACGACGAGGTaGTGGGTCAAACTGAAGAAA +
Preference number: 4 (lower is better)
Translates to: AGCGLTHLQQCARVHIVLLSTTR*WVKLKK
Trigger: TTTCTTCAGTTTGACCCAGCACCTCGTCGTGGAGAG...TAGCACAATGTGAACTCTAGCACACTGTTGTAGATGAGTCAGCCCACAGCCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000009774.11
CDS-3UTR CCA 90 bp GCAGGCTGTGGGCTGACTCATCTACAACAGTGTGCTAGAGTTCACATTGTGCTACATTGGGCCCTCATGTaGAACTTCTTGCAAGCGATC +
Preference number: 4 (lower is better)
Translates to: AGCGLTHLQQCARVHIVLHWALM*NFLQAI
Trigger: GATCGCTTGCAAGAAGTTCCACATGAGGGCCCAATG...TAGCACAATGTGAACTCTAGCACACTGTTGTAGATGAGTCAGCCCACAGCCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000009774.11
CDS-3UTR GCA 90 bp GCAGGCTGTGGGCTGACTCATCTACAACAGTGTGCTAGAGTTCACATTGTGCTAGGACAGCGGACCTCTTaGACATTTGATTCTTTCGTT +
Preference number: 4 (lower is better)
Translates to: AGCGLTHLQQCARVHIVLGQRTS*TFDSFV
Trigger: AACGAAAGAATCAAATGTGCAAGAGGTCCGCTGTCC...TAGCACAATGTGAACTCTAGCACACTGTTGTAGATGAGTCAGCCCACAGCCTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000009774.11
CDS-3UTR CCA 90 bp GCAGGCTGTGGGCTGACTCATCTACAACAGTGTGCTAGAGTTCACATTGTGCTAAGTATTTCCACACGTTaGCATTTCCATACTTCCGTA +
Preference number: 4 (lower is better)
Translates to: AGCGLTHLQQCARVHIVLSISTR*HFHTSV
Trigger: TACGGAAGTATGGAAATGCCAACGTGTGGAAATACT...TAGCACAATGTGAACTCTAGCACACTGTTGTAGATGAGTCAGCCCACAGCCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000009774.11
CDS-3UTR CAA 90 bp GCAGGCTGTGGGCTGACTCATCTACAACAGTGTGCTAGAGTTCACATTGTGCTAGCACAGCGTCCGCACTaGGTTCTCGTTCAGCTGCTT +
Preference number: 5 (lower is better)
Translates to: AGCGLTHLQQCARVHIVLAQRPH*VLVQLL
Trigger: AAGCAGCTGAACGAGAACCAAGTGCGGACGCTGTGC...TAGCACAATGTGAACTCTAGCACACTGTTGTAGATGAGTCAGCCCACAGCCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000009774.11
CDS-3UTR CAA 90 bp GCAGGCTGTGGGCTGACTCATCTACAACAGTGTGCTAGAGTTCACATTGTGCTAATAAAAGCCATACACTaGTGTGATCTGCCGGCTTTC +
Preference number: 5 (lower is better)
Translates to: AGCGLTHLQQCARVHIVLIKAIH*CDLPAF
Trigger: GAAAGCCGGCAGATCACACAAGTGTATGGCTTTTAT...TAGCACAATGTGAACTCTAGCACACTGTTGTAGATGAGTCAGCCCACAGCCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000009774.11
CDS-3UTR CAA 90 bp GCAGGCTGTGGGCTGACTCATCTACAACAGTGTGCTAGAGTTCACATTGTGCTAATAAGAGATCACACATaGGGCCCTCATGTGGAACTT +
Preference number: 5 (lower is better)
Translates to: AGCGLTHLQQCARVHIVLIRDHT*GPHVEL
Trigger: AAGTTCCACATGAGGGCCCAATGTGTGATCTCTTAT...TAGCACAATGTGAACTCTAGCACACTGTTGTAGATGAGTCAGCCCACAGCCTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000009774.11
CDS-3UTR CAA 90 bp GCAGGCTGTGGGCTGACTCATCTACAACAGTGTGCTAGAGTTCACATTGTGCTAAAGTATTTCCACACGTaGGCATTTCCATACTTCCGT +
Preference number: 5 (lower is better)
Translates to: AGCGLTHLQQCARVHIVLKYFHT*AFPYFR
Trigger: ACGGAAGTATGGAAATGCCAACGTGTGGAAATACTT...TAGCACAATGTGAACTCTAGCACACTGTTGTAGATGAGTCAGCCCACAGCCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000009774.11