Pregenerated sensors for PPP1R42 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025916Ensembl transcript IDs: ENSMUST00000027049.10, ENSMUST00000124874.8, ENSMUST00000130102.8, ENSMUST00000147000.9, ENSMUST00000176398.8
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCCAAGTCCTTCACGTGCATCAGCTGGTTGTCAACTGCAATCAGGTaGTTAAGATTCTCCAAGATCTCTAAGTCTTTTATGTCATCAATG | + |
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Preference number: 1 (lower is better) Translates to: SKSFTCISWLSTAIR*LRFSKISKSFMSSM Trigger: CATTGATGACATAAAAGACTTAGAGATCTTGGAGAATCTTAATCACCTGATTGCAGTTGACAACCAGCTGATGCACGTGAAGGACTTGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130102.8 |
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| 3UTR CAA 90 bp | TTCCTTCAAGGACAGATTCCCAGTGACTTGGACGTCAGTATCAGTTaGTCCCTGTATTTTGGTTTAAGACAAACAGGATTTCCATTTAGA | + |
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Preference number: 2 (lower is better) Translates to: FLQGQIPSDLDVSIS*SLYFGLRQTGFPFR Trigger: TCTAAATGGAAATCCTGTTTGTCTTAAACCAAAATACAGGGACAAACTGATACTGACGTCCAAGTCACTGGGAATCTGTCCTTGAAGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130102.8 |
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| 3UTR-3UTR GCA 90 bp | CTGTATTTTGGTTTAAGACAAACAGGATTTCCATTTAGATCCATTTTCCACAGCTCCAAGTCCTTCACGTaGATCAGCTGGTTGTCAACT | + |
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Preference number: 2 (lower is better) Translates to: LYFGLRQTGFPFRSIFHSSKSFT*ISWLST Trigger: AGTTGACAACCAGCTGATGCACGTGAAGGACTTGGA...GCTGTGGAAAATGGATCTAAATGGAAATCCTGTTTGTCTTAAACCAAAATACAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130102.8 |
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| 3UTR-3UTR TCA 90 bp | AGAAACAAATCAAACAACTTACACACCGAGATAAGTGAAGTCCACAAACCCTCATGTTGCCTAGTTCTATaGAGAAATCAAATCACTCGA | + |
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Preference number: 2 (lower is better) Translates to: RNKSNNLHTEISEVHKPSCCLVL*RNQITR Trigger: TCGAGTGATTTGATTTCTTCATAGAACTAGGCAACA...TGAGGGTTTGTGGACTTCACTTATCTCGGTGTGTAAGTTGTTTGATTTGTTTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 ENSMUST00000147000.9 |
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| 3UTR-3UTR TCA 90 bp | CAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGAATTGTTGCCTAGTTCTATaGAGAAATCAAATCACTCGA | + |
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Preference number: 2 (lower is better) Translates to: QNMLLPSSMKKSNHSRLNCCLVL*RNQITR Trigger: TCGAGTGATTTGATTTCTTCATAGAACTAGGCAACA...ATTCAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTTTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 ENSMUST00000147000.9 |
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| 3UTR-3UTR TCA 90 bp | CTGTATTTTGGTTTAAGACAAACAGGATTTCCATTTAGATCCATTTTCCACAGCTCAACTGCAATCAGGTaGTTAAGATTCTCCAAGATC | + |
|
Preference number: 2 (lower is better) Translates to: LYFGLRQTGFPFRSIFHSSTAIR*LRFSKI Trigger: GATCTTGGAGAATCTTAATCACCTGATTGCAGTTGA...GCTGTGGAAAATGGATCTAAATGGAAATCCTGTTTGTCTTAAACCAAAATACAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130102.8 |
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| 3UTR CCA 72 bp | CTTTCAGATTCCTTCAAGGACAGATTCCCAGTGACTTaGACGTCAGTATCAGTTTGTCCCTGTATTTTGGTT | + |
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Preference number: 3 (lower is better) Translates to: LSDSFKDRFPVT*TSVSVCPCILV Trigger: AACCAAAATACAGGGACAAACTGATACTGACGTCCAAGTCACTGGGAATCTGTCCTTGAAGGAATCTGAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130102.8 |
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| 3UTR-3UTR CAA 90 bp | GTGAAGTCCACAAACCCTCAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCACCTCAAAACATGCTGTaGCCTAGTTCTATGAAGAAA | + |
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Preference number: 3 (lower is better) Translates to: VKSTNPQNMLLPSSMKKSPQNML*PSSMKK Trigger: TTTCTTCATAGAACTAGGCAACAGCATGTTTTGAGG...TGATTTCTTCATAGAACTAGGCAACAGCATGTTTTGAGGGTTTGTGGACTTCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 ENSMUST00000147000.9 |
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| 3UTR-3UTR CAA 90 bp | GTTAGCGAGCTTTCAGATTCCTTCAAGGACAGATTCCCTATGTCTTCAGTAATTCTTCTTGGGAACATTTaGAAGATGCATTTCCATGTA | + |
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Preference number: 3 (lower is better) Translates to: VSELSDSFKDRFPMSSVILLGNI*KMHFHV Trigger: TACATGGAAATGCATCTTCAAAATGTTCCCAAGAAG...AATTACTGAAGACATAGGGAATCTGTCCTTGAAGGAATCTGAAAGCTCGCTAAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124874.8 |
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| 3UTR TCA 72 bp | AAGAAACAAATCAAACAACTTACACACCGAGATAAGTaGAGTCCACAAACCCTCAAAACATGCTGTTGCCTA | + |
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Preference number: 3 (lower is better) Translates to: KKQIKQLTHRDK*SPQTLKTCCCL Trigger: TAGGCAACAGCATGTTTTGAGGGTTTGTGGACTTCACTTATCTCGGTGTGTAAGTTGTTTGATTTGTTTCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 ENSMUST00000147000.9 |
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| 3UTR-3UTR CAA 90 bp | AACATGCTGTTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGAATTTACCTCAAAACATGCTGTaGCCTAGTTCTATGAAGAAA | + |
|
Preference number: 3 (lower is better) Translates to: NMLLPSSMKKSNHSRLNLPQNML*PSSMKK Trigger: TTTCTTCATAGAACTAGGCAACAGCATGTTTTGAGG...TAAATTCAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000124874.8 ENSMUST00000147000.9 |
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| 3UTR-3UTR CAA 90 bp | CAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGAATCATGGATATCGTTTTTaGTTAGCGAGCTTTCAGATT | + |
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Preference number: 3 (lower is better) Translates to: QNMLLPSSMKKSNHSRLNHGYRF*LASFQI Trigger: AATCTGAAAGCTCGCTAACAAAAAACGATATCCATG...ATTCAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTTTTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000124874.8 ENSMUST00000147000.9 |
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| 3UTR-3UTR CAA 90 bp | AACATGCTGTTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGAATTTACTTTACTTTTGGATTTaGGAGAAGGTGAGGTTCATG | + |
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Preference number: 3 (lower is better) Translates to: NMLLPSSMKKSNHSRLNLLYFWI*EKVRFM Trigger: CATGAACCTCACCTTCTCCAAAATCCAAAAGTAAAG...TAAATTCAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000124874.8 ENSMUST00000147000.9 |
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| 3UTR-3UTR CAA 90 bp | CTGTATTTTGGTTTAAGACAAACAGGATTTCCATTTAGATCCATTTTCCACAGCCATGGATATCGTTTTTaGTTAGCGAGCTTTCAGATT | + |
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Preference number: 3 (lower is better) Translates to: LYFGLRQTGFPFRSIFHSHGYRF*LASFQI Trigger: AATCTGAAAGCTCGCTAACAAAAAACGATATCCATG...GCTGTGGAAAATGGATCTAAATGGAAATCCTGTTTGTCTTAAACCAAAATACAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000130102.8 |
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| CDS-3UTR TCA 90 bp | AAAGCTCCAAGTCCTTCACGTGCATCAGCTGGTTGTCAACTGCAATCAGGTGATCTTCCAAGCCTTCTATaGCCGCAATGTAATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: KAPSPSRASAGCQLQSGDLPSLL*PQCNCL Trigger: GAGGCAATTACATTGCGGTCATAGAAGGCTTGGAAG...ATCACCTGATTGCAGTTGACAACCAGCTGATGCACGTGAAGGACTTGGAGCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130102.8 |
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| CDS-3UTR GCA 90 bp | AAGCTCCAAGTCCTTCACGTGCATCAGCTGGTTGTCAACTGCAATCAGGTGATTAAACACTCAGGTTTCTaGAAAGAGAGAGGTCATCAA | + |
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Preference number: 4 (lower is better) Translates to: KLQVLHVHQLVVNCNQVIKHSGF*KERGHQ Trigger: TTGATGACCTCTCTCTTTGCAGAAACCTGAGTGTTT...AATCACCTGATTGCAGTTGACAACCAGCTGATGCACGTGAAGGACTTGGAGCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000130102.8 |
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| CDS-3UTR GCA 90 bp | GTGAAGTCCACAAACCCTCAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCATCCAAGTCCTTCACGTaGATCAGCTGGTTGTCAACT | + |
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Preference number: 4 (lower is better) Translates to: VKSTNPQNMLLPSSMKKSSKSFT*ISWLST Trigger: AGTTGACAACCAGCTGATGCACGTGAAGGACTTGGA...TGATTTCTTCATAGAACTAGGCAACAGCATGTTTTGAGGGTTTGTGGACTTCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 |
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| CDS-3UTR TCA 90 bp | CAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGAATCTTCCAAGCCTTCTATaGCCGCAATGTAATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: QNMLLPSSMKKSNHSRLNLPSLL*PQCNCL Trigger: GAGGCAATTACATTGCGGTCATAGAAGGCTTGGAAG...ATTCAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 |
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| CDS-3UTR CCA 90 bp | CCTCAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGTGGCTTACCCACCTGTaGGTAATAAACAGGAACTAT | + |
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Preference number: 4 (lower is better) Translates to: PQNMLLPSSMKKSNHSRLWLTHL*VINRNY Trigger: ATAGTTCCTGTTTATTACCCACAGGTGGGTAAGCCA...CAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTTTTGAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027049.10 |
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| 3UTR CAA 72 bp | GGACAGATTCCCAGTGACTTGGACGTCAGTATCAGTTaGTCCCTGTATTTTGGTTTAAGACAAACAGGATTT | + |
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Preference number: 4 (lower is better) Translates to: GQIPSDLDVSIS*SLYFGLRQTGF Trigger: AAATCCTGTTTGTCTTAAACCAAAATACAGGGACAAACTGATACTGACGTCCAAGTCACTGGGAATCTGTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130102.8 |
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| CDS-3UTR TCA 90 bp | TCTTGGGAACATTTTGAAGATGCATTTCCATGTACAAGATATCTCTGTACATCGCTTCCAAGCCTTCTATaGCCGCAATGTAATTGCCTC | + |
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Preference number: 4 (lower is better) Translates to: SWEHFEDAFPCTRYLCTSLPSLL*PQCNCL Trigger: GAGGCAATTACATTGCGGTCATAGAAGGCTTGGAAG...CGATGTACAGAGATATCTTGTACATGGAAATGCATCTTCAAAATGTTCCCAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124874.8 |
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| CDS-3UTR TCA 90 bp | GTGAAGTCCACAAACCCTCAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCAGGATTTTGGAGAAGGTaGGGTTCATGGATATCGTTT | + |
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Preference number: 4 (lower is better) Translates to: VKSTNPQNMLLPSSMKKSGFWRR*GSWISF Trigger: AAACGATATCCATGAACCTCACCTTCTCCAAAATCC...TGATTTCTTCATAGAACTAGGCAACAGCATGTTTTGAGGGTTTGTGGACTTCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027049.10 |
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| CDS-3UTR GCA 90 bp | AACATGCTGTTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGAATTTATCCAAGTCCTTCACGTaGATCAGCTGGTTGTCAACT | + |
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Preference number: 4 (lower is better) Translates to: NMLLPSSMKKSNHSRLNLSKSFT*ISWLST Trigger: AGTTGACAACCAGCTGATGCACGTGAAGGACTTGGA...TAAATTCAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000124874.8 |
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| CDS-3UTR GCA 90 bp | GTGAAGTCCACAAACCCTCAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCATATATAGGAGTTGCTTaGATCCTCACTTCTGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: VKSTNPQNMLLPSSMKKSYIGVA*ILTSAP Trigger: AGGAGCAGAAGTGAGGATGCAAGCAACTCCTATATA...TGATTTCTTCATAGAACTAGGCAACAGCATGTTTTGAGGGTTTGTGGACTTCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 ENSMUST00000147000.9 |
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| CDS-3UTR GCA 90 bp | CCTCAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGTACTTATATAGGAGTTaGTTGCATCCTCACTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: PQNMLLPSSMKKSNHSRLYLYRS*LHPHFC Trigger: GCAGAAGTGAGGATGCAAGCAACTCCTATATAAGTA...CAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTTTTGAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027049.10 |
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| CDS-3UTR CCA 90 bp | CCTCAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGGAAATTCCAGTGACTTaGACGTCAGTATCAGTTTGT | + |
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Preference number: 4 (lower is better) Translates to: PQNMLLPSSMKKSNHSRLEIPVT*TSVSVC Trigger: ACAAACTGATACTGACGTCCAAGTCACTGGAATTTC...CAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTTTTGAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 ENSMUST00000147000.9 |
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| CDS-3UTR TCA 90 bp | GTGAAGTCCACAAACCCTCAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCATCAACTGCAATCAGGTaGTTAAGATTCTCCAAGATC | + |
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Preference number: 4 (lower is better) Translates to: VKSTNPQNMLLPSSMKKSSTAIR*LRFSKI Trigger: GATCTTGGAGAATCTTAATCACCTGATTGCAGTTGA...TGATTTCTTCATAGAACTAGGCAACAGCATGTTTTGAGGGTTTGTGGACTTCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 |
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| CDS-3UTR GCA 90 bp | AGAAACAAATCAAACAACTTACACACCGAGATAAGTGAAGTCCACAAACCCTCATATATAGGAGTTGCTTaGATCCTCACTTCTGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: RNKSNNLHTEISEVHKPSYIGVA*ILTSAP Trigger: AGGAGCAGAAGTGAGGATGCAAGCAACTCCTATATA...TGAGGGTTTGTGGACTTCACTTATCTCGGTGTGTAAGTTGTTTGATTTGTTTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 ENSMUST00000147000.9 |
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| CDS-3UTR CCA 90 bp | CAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGAATGAAGAAGATTACTTTTaGCTTACCCACCTGTGGGTA | + |
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Preference number: 4 (lower is better) Translates to: QNMLLPSSMKKSNHSRLNEEDYF*LTHLWV Trigger: TACCCACAGGTGGGTAAGCCAAAAGTAATCTTCTTC...ATTCAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027049.10 |
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| CDS-3UTR TCA 90 bp | CAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGAATTCAACTGCAATCAGGTaGTTAAGATTCTCCAAGATC | + |
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Preference number: 4 (lower is better) Translates to: QNMLLPSSMKKSNHSRLNSTAIR*LRFSKI Trigger: GATCTTGGAGAATCTTAATCACCTGATTGCAGTTGA...ATTCAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTTTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 |
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| CDS-3UTR GCA 90 bp | AGAAACAAATCAAACAACTTACACACCGAGATAAGTGAAGTCCACAAACCCTCAAAACACTCAGGTTTCTaGAAAGAGAGAGGTCATCAA | + |
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Preference number: 4 (lower is better) Translates to: RNKSNNLHTEISEVHKPSKHSGF*KERGHQ Trigger: TTGATGACCTCTCTCTTTGCAGAAACCTGAGTGTTT...TGAGGGTTTGTGGACTTCACTTATCTCGGTGTGTAAGTTGTTTGATTTGTTTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 |
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| CDS-3UTR GCA 90 bp | CAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGAATAAACACTCAGGTTTCTaGAAAGAGAGAGGTCATCAA | + |
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Preference number: 4 (lower is better) Translates to: QNMLLPSSMKKSNHSRLNKHSGF*KERGHQ Trigger: TTGATGACCTCTCTCTTTGCAGAAACCTGAGTGTTT...ATTCAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTTTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 |
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| CDS-3UTR GCA 90 bp | CCTCAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGTTTCAATGCAGGAAATaGAATTGTTCTGTAGGTACA | + |
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Preference number: 4 (lower is better) Translates to: PQNMLLPSSMKKSNHSRLFQCRK*NCSVGT Trigger: TGTACCTACAGAACAATTGCATTTCCTGCATTGAAA...CAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTTTTGAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 |
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| CDS-3UTR GCA 90 bp | TCTTGGGAACATTTTGAAGATGCATTTCCATGTACAAGATATCTCTGTACATCGCACTTATATAGGAGTTaGTTGCATCCTCACTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: SWEHFEDAFPCTRYLCTSHLYRS*LHPHFC Trigger: GCAGAAGTGAGGATGCAAGCAACTCCTATATAAGTG...CGATGTACAGAGATATCTTGTACATGGAAATGCATCTTCAAAATGTTCCCAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124874.8 |
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| CDS-3UTR CCA 90 bp | AGAAACAAATCAAACAACTTACACACCGAGATAAGTGAAGTCCACAAACCCTCAGAAATTCCAGTGACTTaGACGTCAGTATCAGTTTGT | + |
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Preference number: 4 (lower is better) Translates to: RNKSNNLHTEISEVHKPSEIPVT*TSVSVC Trigger: ACAAACTGATACTGACGTCCAAGTCACTGGAATTTC...TGAGGGTTTGTGGACTTCACTTATCTCGGTGTGTAAGTTGTTTGATTTGTTTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 ENSMUST00000147000.9 |
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| CDS-3UTR TCA 90 bp | AGAAACAAATCAAACAACTTACACACCGAGATAAGTGAAGTCCACAAACCCTCATTCTTGGGAACATTTTaGAGATGCATTTCCATGTAC | + |
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Preference number: 4 (lower is better) Translates to: RNKSNNLHTEISEVHKPSFLGTF*RCISMY Trigger: GTACATGGAAATGCATCTTCAAAATGTTCCCAAGAA...TGAGGGTTTGTGGACTTCACTTATCTCGGTGTGTAAGTTGTTTGATTTGTTTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027049.10 |
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| CDS-3UTR GCA 90 bp | AGTTCTATGAAGAAATCAAATCACTCGAGGCTGAATTTACTCCTTTTTCTCAGATATATAGGAGTTGCTTaGATCCTCACTTCTGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: SSMKKSNHSRLNLLLFLRYIGVA*ILTSAP Trigger: AGGAGCAGAAGTGAGGATGCAAGCAACTCCTATATA...TCTGAGAAAAAGGAGTAAATTCAGCCTCGAGTGATTTGATTTCTTCATAGAACT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000124874.8 ENSMUST00000147000.9 |
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| CDS-3UTR CCA 90 bp | CAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGAATAGAACGAAGAGTTCTTaGATCAAACAGAAGCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: QNMLLPSSMKKSNHSRLNRTKSS*IKQKLF Trigger: GAAAAGCTTCTGTTTGATCCAAGAACTCTTCGTTCT...ATTCAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTTTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 |
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| CDS-3UTR CCA 90 bp | CTTGGGAACATTTTGAAGATGCATTTCCATGTACAAGATATCTCTGTACATCGGAGAACGAAGAGTTCTTaGATCAAACAGAAGCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: LGNILKMHFHVQDISVHRRTKSS*IKQKLF Trigger: GAAAAGCTTCTGTTTGATCCAAGAACTCTTCGTTCT...CCGATGTACAGAGATATCTTGTACATGGAAATGCATCTTCAAAATGTTCCCAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124874.8 |
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| CDS-3UTR GCA 90 bp | TTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGAATTTACTCCTTTTTTTCTTATATAGGAGTTaGTTGCATCCTCACTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: LPSSMKKSNHSRLNLLLFFLYRS*LHPHFC Trigger: GCAGAAGTGAGGATGCAAGCAACTCCTATATAAGAA...AAAAAGGAGTAAATTCAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAA 37% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 1 transcripts: ENSMUST00000147000.9 |
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| CDS-3UTR CCA 90 bp | CTGTATTTTGGTTTAAGACAAACAGGATTTCCATTTAGATCCATTTTCCACAGCAGAACGAAGAGTTCTTaGATCAAACAGAAGCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: LYFGLRQTGFPFRSIFHSRTKSS*IKQKLF Trigger: GAAAAGCTTCTGTTTGATCCAAGAACTCTTCGTTCT...GCTGTGGAAAATGGATCTAAATGGAAATCCTGTTTGTCTTAAACCAAAATACAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000130102.8 |
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| 3UTR CAA 72 bp | TCCAAGATCTCTAAGTCTTTTATGTCATCAATGTTATaGTTGCTGATATTCAAAGTAGAGAGGGATTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: SKISKSFMSSML*LLIFKVERDFW Trigger: CCAGAAATCCCTCTCTACTTTGAATATCAGCAACAATAACATTGATGACATAAAAGACTTAGAGATCTTGGA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130102.8 |
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| CDS-3UTR GCA 90 bp | CTGTATTTTGGTTTAAGACAAACAGGATTTCCATTTAGATCCATTTTCCACAGCTTTCAATGCAGGAAATaGAATTGTTCTGTAGGTACA | + |
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Preference number: 4 (lower is better) Translates to: LYFGLRQTGFPFRSIFHSFQCRK*NCSVGT Trigger: TGTACCTACAGAACAATTGCATTTCCTGCATTGAAA...GCTGTGGAAAATGGATCTAAATGGAAATCCTGTTTGTCTTAAACCAAAATACAG 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130102.8 |
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| CDS-3UTR CAA 90 bp | AAGCTCCAAGTCCTTCACGTGCATCAGCTGGTTGTCAACTGCAATCAGGTGATTTTAAGATTGCTGTTTTaGGCAATTAAATCCACCGTC | + |
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Preference number: 5 (lower is better) Translates to: KLQVLHVHQLVVNCNQVILRLLF*AIKSTV Trigger: GACGGTGGATTTAATTGCCAAAAACAGCAATCTTAA...AATCACCTGATTGCAGTTGACAACCAGCTGATGCACGTGAAGGACTTGGAGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130102.8 |
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| CDS-3UTR CAA 90 bp | AAGGACAGATTCCCAGTGACTTGGACGTCAGTATCAGTTTGTCCCTGTATTTTGGAGAACGAAGAGTTCTaGGATCAAACAGAAGCTTTT | + |
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Preference number: 5 (lower is better) Translates to: KDRFPVTWTSVSVCPCILENEEF*DQTEAF Trigger: AAAAGCTTCTGTTTGATCCAAGAACTCTTCGTTCTC...CAAAATACAGGGACAAACTGATACTGACGTCCAAGTCACTGGGAATCTGTCCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130102.8 |
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| CDS-3UTR CAA 90 bp | GTGAAGTCCACAAACCCTCAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCAATGCAGGAAATGCAATaGTTCTGTAGGTACAAGTGG | + |
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Preference number: 5 (lower is better) Translates to: VKSTNPQNMLLPSSMKKSMQEMQ*FCRYKW Trigger: CCACTTGTACCTACAGAACAATTGCATTTCCTGCAT...TGATTTCTTCATAGAACTAGGCAACAGCATGTTTTGAGGGTTTGTGGACTTCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 |
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| CDS-3UTR CAA 90 bp | CAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGAATAGAAGAAGATTACTTTaGGCTTACCCACCTGTGGGT | + |
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Preference number: 5 (lower is better) Translates to: QNMLLPSSMKKSNHSRLNRRRLL*AYPPVG Trigger: ACCCACAGGTGGGTAAGCCAAAAGTAATCTTCTTCT...ATTCAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027049.10 |
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| CDS TCA 90 bp | CAACATGAAGCTCTCTTAGTTCTTCTAATCCTTCCAAGCCTTCTATaGCCGCAATGTAATTGCCTCCCAGATACAGTTTTTCCAATTTCT | + |
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Preference number: 5 (lower is better) Translates to: QHEALLVLLILPSLL*PQCNCLPDTVFPIS Trigger: AGAAATTGGAAAAACTGTATCTGGGAGGCAATTACATTGCGGTCATAGAAGGCTTGGAAGGATTAGAAGAACTAAGAGAGCTTCATGTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 ENSMUST00000130102.8 |
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| CDS CCA 90 bp | TCCATGTACAAGATATCTCTGTACATCGGAGAAGAAGATTACTTTTaGCTTACCCACCTGTGGGTAATAAACAGGAACTATGTGATGTAC | + |
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Preference number: 5 (lower is better) Translates to: SMYKISLYIGEEDYF*LTHLWVINRNYVMY Trigger: GTACATCACATAGTTCCTGTTTATTACCCACAGGTGGGTAAGCCAAAAGTAATCTTCTTCTCCGATGTACAGAGATATCTTGTACATGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027049.10 |
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| CDS-3UTR CAA 90 bp | CCTCAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGTTAAGATTGCTGTTTTaGGCAATTAAATCCACCGTC | + |
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Preference number: 5 (lower is better) Translates to: PQNMLLPSSMKKSNHSRLLRLLF*AIKSTV Trigger: GACGGTGGATTTAATTGCCAAAAACAGCAATCTTAA...CAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTTTTGAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 |
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| CDS-3UTR CAA 90 bp | GTGAAGTCCACAAACCCTCAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCATTCTTGCTGATTTTCTaGGCATCTTTGGATGCTTTC | + |
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Preference number: 5 (lower is better) Translates to: VKSTNPQNMLLPSSMKKSFLLIF*ASLDAF Trigger: GAAAGCATCCAAAGATGCCAAGAAAATCAGCAAGAA...TGATTTCTTCATAGAACTAGGCAACAGCATGTTTTGAGGGTTTGTGGACTTCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 ENSMUST00000147000.9 |
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| CDS-3UTR CAA 90 bp | GTGAAGTCCACAAACCCTCAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCACTTTACTTTTGGATTTaGGAGAAGGTGAGGTTCATG | + |
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Preference number: 5 (lower is better) Translates to: VKSTNPQNMLLPSSMKKSLYFWI*EKVRFM Trigger: CATGAACCTCACCTTCTCCAAAATCCAAAAGTAAAG...TGATTTCTTCATAGAACTAGGCAACAGCATGTTTTGAGGGTTTGTGGACTTCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027049.10 |
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| CDS-3UTR CAA 90 bp | CAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGAATTATTTTCTTCAGGCATaGTGCAAGGGTCTCTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: QNMLLPSSMKKSNHSRLNYFLQA*CKGLFF Trigger: AAAGAAGAGACCCTTGCACAATGCCTGAAGAAAATA...ATTCAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTTTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 |
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| CDS-3UTR CAA 90 bp | TCTTGGGAACATTTTGAAGATGCATTTCCATGTACAAGATATCTCTGTACATCGATGCAGGAAATGCAATaGTTCTGTAGGTACAAGTGG | + |
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Preference number: 5 (lower is better) Translates to: SWEHFEDAFPCTRYLCTSMQEMQ*FCRYKW Trigger: CCACTTGTACCTACAGAACAATTGCATTTCCTGCAT...CGATGTACAGAGATATCTTGTACATGGAAATGCATCTTCAAAATGTTCCCAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000124874.8 |
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| CDS-3UTR CAA 90 bp | CAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGAATGAGAACGAAGAGTTCTaGGATCAAACAGAAGCTTTT | + |
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Preference number: 5 (lower is better) Translates to: QNMLLPSSMKKSNHSRLNENEEF*DQTEAF Trigger: AAAAGCTTCTGTTTGATCCAAGAACTCTTCGTTCTC...ATTCAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTTTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 |
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| CDS-3UTR CAA 90 bp | CAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGAATGACGTCAGTATCAGTTaGTCCCTGTATTTTGGTTTA | + |
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Preference number: 5 (lower is better) Translates to: QNMLLPSSMKKSNHSRLNDVSIS*SLYFGL Trigger: TAAACCAAAATACAGGGACAAACTGATACTGACGTC...ATTCAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTTTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 ENSMUST00000147000.9 |
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| CDS-3UTR CAA 90 bp | AGAAACAAATCAAACAACTTACACACCGAGATAAGTGAAGTCCACAAACCCTCATTCTTGCTGATTTTCTaGGCATCTTTGGATGCTTTC | + |
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Preference number: 5 (lower is better) Translates to: RNKSNNLHTEISEVHKPSFLLIF*ASLDAF Trigger: GAAAGCATCCAAAGATGCCAAGAAAATCAGCAAGAA...TGAGGGTTTGTGGACTTCACTTATCTCGGTGTGTAAGTTGTTTGATTTGTTTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 ENSMUST00000147000.9 |
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| CDS-3UTR CAA 90 bp | GTGAAGTCCACAAACCCTCAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCACTTCTTGGGAACATTTaGAAGATGCATTTCCATGTA | + |
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Preference number: 5 (lower is better) Translates to: VKSTNPQNMLLPSSMKKSLLGNI*KMHFHV Trigger: TACATGGAAATGCATCTTCAAAATGTTCCCAAGAAG...TGATTTCTTCATAGAACTAGGCAACAGCATGTTTTGAGGGTTTGTGGACTTCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027049.10 |
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| CDS-3UTR CAA 90 bp | GTGAAGTCCACAAACCCTCAAAACATGCTGTTGCCTAGTTCTATGAAGAAATCACATGGATATCGTTTTTaGTTAGCGAGCTTTCAGATT | + |
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Preference number: 5 (lower is better) Translates to: VKSTNPQNMLLPSSMKKSHGYRF*LASFQI Trigger: AATCTGAAAGCTCGCTAACAAAAAACGATATCCATG...TGATTTCTTCATAGAACTAGGCAACAGCATGTTTTGAGGGTTTGTGGACTTCAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027049.10 |
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| CDS-3UTR CAA 90 bp | AGAAACAAATCAAACAACTTACACACCGAGATAAGTGAAGTCCACAAACCCTCATTAAGATTGCTGTTTTaGGCAATTAAATCCACCGTC | + |
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Preference number: 5 (lower is better) Translates to: RNKSNNLHTEISEVHKPSLRLLF*AIKSTV Trigger: GACGGTGGATTTAATTGCCAAAAACAGCAATCTTAA...TGAGGGTTTGTGGACTTCACTTATCTCGGTGTGTAAGTTGTTTGATTTGTTTCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 |
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| CDS-3UTR CAA 90 bp | TCTTGGGAACATTTTGAAGATGCATTTCCATGTACAAGATATCTCTGTACATCGTATTTTCTTCAGGCATaGTGCAAGGGTCTCTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: SWEHFEDAFPCTRYLCTSYFLQA*CKGLFF Trigger: AAAGAAGAGACCCTTGCACAATGCCTGAAGAAAATA...CGATGTACAGAGATATCTTGTACATGGAAATGCATCTTCAAAATGTTCCCAAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000124874.8 |
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| CDS-3UTR CAA 90 bp | CTGTATTTTGGTTTAAGACAAACAGGATTTCCATTTAGATCCATTTTCCACAGCATGCAGGAAATGCAATaGTTCTGTAGGTACAAGTGG | + |
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Preference number: 5 (lower is better) Translates to: LYFGLRQTGFPFRSIFHSMQEMQ*FCRYKW Trigger: CCACTTGTACCTACAGAACAATTGCATTTCCTGCAT...GCTGTGGAAAATGGATCTAAATGGAAATCCTGTTTGTCTTAAACCAAAATACAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130102.8 |
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| CDS-3UTR CAA 90 bp | AACATGCTGTTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGAATTTAGACGTCAGTATCAGTTaGTCCCTGTATTTTGGTTTA | + |
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Preference number: 5 (lower is better) Translates to: NMLLPSSMKKSNHSRLNLDVSIS*SLYFGL Trigger: TAAACCAAAATACAGGGACAAACTGATACTGACGTC...TAAATTCAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAACAGCATGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000124874.8 ENSMUST00000147000.9 |
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| CDS-3UTR CAA 90 bp | TTGCCTAGTTCTATGAAGAAATCAAATCACTCGAGGCTGAATTTACTCCTTTTTGAGAACGAAGAGTTCTaGGATCAAACAGAAGCTTTT | + |
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Preference number: 5 (lower is better) Translates to: LPSSMKKSNHSRLNLLLFENEEF*DQTEAF Trigger: AAAAGCTTCTGTTTGATCCAAGAACTCTTCGTTCTC...AAAAAGGAGTAAATTCAGCCTCGAGTGATTTGATTTCTTCATAGAACTAGGCAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000124874.8 |
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| CDS TCA 72 bp | GCTCTCTTAGTTCTTCTAATCCTTCCAAGCCTTCTATaGCCGCAATGTAATTGCCTCCCAGATACAGTTTTT | + |
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Preference number: 6 (lower is better) Translates to: ALLVLLILPSLL*PQCNCLPDTVF Trigger: AAAAACTGTATCTGGGAGGCAATTACATTGCGGTCATAGAAGGCTTGGAAGGATTAGAAGAACTAAGAGAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 ENSMUST00000130102.8 |
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| CDS GCA 72 bp | TGTGATGTACTGTTTCAAAGTTACTTATATAGGAGTTaGTTGCATCCTCACTTCTGCTCCTCCTTTTCTTGC | + |
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Preference number: 6 (lower is better) Translates to: CDVLFQSYLYRS*LHPHFCSSFSC Trigger: GCAAGAAAAGGAGGAGCAGAAGTGAGGATGCAAGCAACTCCTATATAAGTAACTTTGAAACAGTACATCACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027049.10 |
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| CDS CAA 72 bp | TTTAGTGAACTGAGGTTTTCAATGCAGGAAATGCAATaGTTCTGTAGGTACAAGTGGGTCAGATTTGTGGTG | + |
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Preference number: 6 (lower is better) Translates to: FSELRFSMQEMQ*FCRYKWVRFVV Trigger: CACCACAAATCTGACCCACTTGTACCTACAGAACAATTGCATTTCCTGCATTGAAAACCTCAGTTCACTAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 ENSMUST00000130102.8 |
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| CDS CAA 72 bp | CAAGATATCTCTGTACATCGGAGAAGAAGATTACTTTaGGCTTACCCACCTGTGGGTAATAAACAGGAACTA | + |
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Preference number: 6 (lower is better) Translates to: QDISVHRRRRLL*AYPPVGNKQEL Trigger: TAGTTCCTGTTTATTACCCACAGGTGGGTAAGCCAAAAGTAATCTTCTTCTCCGATGTACAGAGATATCTTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027049.10 |
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| CDS CAA 90 bp | TTCCATGTACAAGATATCTCTGTACATCGGAGAAGAAGATTACTTTaGGCTTACCCACCTGTGGGTAATAAACAGGAACTATGTGATGTA | + |
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Preference number: 6 (lower is better) Translates to: FHVQDISVHRRRRLL*AYPPVGNKQELCDV Trigger: TACATCACATAGTTCCTGTTTATTACCCACAGGTGGGTAAGCCAAAAGTAATCTTCTTCTCCGATGTACAGAGATATCTTGTACATGGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027049.10 |
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| CDS GCA 72 bp | ATGTACTGTTTCAAAGTTACTTATATAGGAGTTGCTTaGATCCTCACTTCTGCTCCTCCTTTTCTTGCTGAT | + |
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Preference number: 6 (lower is better) Translates to: MYCFKVTYIGVA*ILTSAPPFLAD Trigger: ATCAGCAAGAAAAGGAGGAGCAGAAGTGAGGATGCAAGCAACTCCTATATAAGTAACTTTGAAACAGTACAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027049.10 |
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| CDS CCA 72 bp | AAGATATCTCTGTACATCGGAGAAGAAGATTACTTTTaGCTTACCCACCTGTGGGTAATAAACAGGAACTAT | + |
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Preference number: 6 (lower is better) Translates to: KISLYIGEEDYF*LTHLWVINRNY Trigger: ATAGTTCCTGTTTATTACCCACAGGTGGGTAAGCCAAAAGTAATCTTCTTCTCCGATGTACAGAGATATCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027049.10 |
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| CDS CAA 90 bp | TCCTCACTTCTGCTCCTCCTTTTCTTGCTGATTTTCTTGGCATCTTaGGATGCTTTCCAATTCATTAGGAATTGTCTTTCCATATCTTTT | + |
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Preference number: 6 (lower is better) Translates to: SSLLLLLFLLIFLAS*DAFQFIRNCLSISF Trigger: AAAAGATATGGAAAGACAATTCCTAATGAATTGGAAAGCATCCAAAGATGCCAAGAAAATCAGCAAGAAAAGGAGGAGCAGAAGTGAGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 ENSMUST00000147000.9 ENSMUST00000176398.8 |
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| CDS CAA 72 bp | TCAAGAAATTCCAGTGACTTGGACGTCAGTATCAGTTaGTCCCTGTATTTTGGTTTAAGACAAACAGGATTT | + |
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Preference number: 6 (lower is better) Translates to: SRNSSDLDVSIS*SLYFGLRQTGF Trigger: AAATCCTGTTTGTCTTAAACCAAAATACAGGGACAAACTGATACTGACGTCCAAGTCACTGGAATTTCTTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 ENSMUST00000147000.9 ENSMUST00000176398.8 |
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| CDS CAA 90 bp | TCTTTTCCATCAAGAAATTCCAGTGACTTGGACGTCAGTATCAGTTaGTCCCTGTATTTTGGTTTAAGACAAACAGGATTTCCATTTAGA | + |
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Preference number: 6 (lower is better) Translates to: SFPSRNSSDLDVSIS*SLYFGLRQTGFPFR Trigger: TCTAAATGGAAATCCTGTTTGTCTTAAACCAAAATACAGGGACAAACTGATACTGACGTCCAAGTCACTGGAATTTCTTGATGGAAAAGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 ENSMUST00000147000.9 ENSMUST00000176398.8 |
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| CDS CAA 72 bp | TCCAAGATCTCTAAGTCTTTTATGTCATCAATGTTATaGTTGCTGATATTCAAAGTAGAGAGGGATTTCGCT | + |
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Preference number: 6 (lower is better) Translates to: SKISKSFMSSML*LLIFKVERDFA Trigger: AGCGAAATCCCTCTCTACTTTGAATATCAGCAACAATAACATTGATGACATAAAAGACTTAGAGATCTTGGA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027049.10 ENSMUST00000124874.8 |
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