RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PPP1R3B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046794

Ensembl transcript IDs: ENSMUST00000070481.8, ENSMUST00000210337.2, ENSMUST00000211648.2

Found 233 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGCTCCTCTCCAGACCCTTCTGGCACCATCCTGCGCATTCCCTTGTaGCCAACCCGGATGCCACAGAGGATCAGCACCGCTCCACTCCTC +
Preference number: 1 (lower is better)
Translates to: GSSPDPSGTILRIPL*PTRMPQRISTAPLL
Trigger: GAGGAGTGGAGCGGTGCTGATCCTCTGTGGCATCCGGGTTGGCCACAAGGGAATGCGCAGGATGGTGCCAGAAGGGTCTGGAGAGGAGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR GCA 90 bp GTCCTTGCCAGCTTGGCTCCTCTCCAGACCCTTCTGGCACCATCCTaGGCATTCCCTTGTGGCCAACCCGGATGCCACAGAGGATCAGCA +
Preference number: 1 (lower is better)
Translates to: VLASLAPLQTLLAPS*AFPCGQPGCHRGSA
Trigger: TGCTGATCCTCTGTGGCATCCGGGTTGGCCACAAGGGAATGCGCAGGATGGTGCCAGAAGGGTCTGGAGAGGAGCCAAGCTGGCAAGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR GCA 90 bp CTTTCAGAGTCCAAGTGTGGAAGAGAGGCCAGCTTCCTCTGTCCTTaGCAGCTTGGCTCCTCTCCAGACCCTTCTGGCACCATCCTGCGC +
Preference number: 1 (lower is better)
Translates to: LSESKCGREASFLCP*QLGSSPDPSGTILR
Trigger: GCGCAGGATGGTGCCAGAAGGGTCTGGAGAGGAGCCAAGCTGGCAAGGACAGAGGAAGCTGGCCTCTCTTCCACACTTGGACTCTGAAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 90 bp GTCCAAGTGTGGAAGAGAGGCCAGCTTCCTCTGTCCTTGCCAGCTTaGCTCCTCTCCAGACCCTTCTGGCACCATCCTGCGCATTCCCTT +
Preference number: 1 (lower is better)
Translates to: VQVWKRGQLPLSLPA*LLSRPFWHHPAHSL
Trigger: AAGGGAATGCGCAGGATGGTGCCAGAAGGGTCTGGAGAGGAGCCAAGCTGGCAAGGACAGAGGAAGCTGGCCTCTCTTCCACACTTGGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 90 bp GAGGCTGCTGGGTATCAATCAGGCCAGTGTGTCCCAGAACTGAGGTaGCTCCCTTCGGAGTACTCGTGGAATGAAGGAGACGCATGGAAA +
Preference number: 1 (lower is better)
Translates to: EAAGYQSGQCVPELR*LPSEYSWNEGDAWK
Trigger: TTTCCATGCGTCTCCTTCATTCCACGAGTACTCCGAAGGGAGCCACCTCAGTTCTGGGACACACTGGCCTGATTGATACCCAGCAGCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 90 bp GTAAGGCTGGAGATTGGTTTCTGGGTGACTTTCAGAGTCCAAGTGTaGAAGAGAGGCCAGCTTCCTCTGTCCTTGCCAGCTTGGCTCCTC +
Preference number: 1 (lower is better)
Translates to: VRLEIGFWVTFRVQV*KRGQLPLSLPAWLL
Trigger: GAGGAGCCAAGCTGGCAAGGACAGAGGAAGCTGGCCTCTCTTCCACACTTGGACTCTGAAAGTCACCCAGAAACCAATCTCCAGCCTTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 90 bp CATGAGCGGGGACAGGACCTCGAGGTCAATGGTAAGGCTGGAGATTaGTTTCTGGGTGACTTTCAGAGTCCAAGTGTGGAAGAGAGGCCA +
Preference number: 1 (lower is better)
Translates to: HERGQDLEVNGKAGD*FLGDFQSPSVEERP
Trigger: TGGCCTCTCTTCCACACTTGGACTCTGAAAGTCACCCAGAAACCAATCTCCAGCCTTACCATTGACCTCGAGGTCCTGTCCCCGCTCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR TCA 90 bp GGGCTGTATTGGAGGCAGAAAGCAGAAGGAAGACTCTTCTGTCTCTaGGTGACAGCCTTGATAAGGAAGTCAAGCACAGCCCACGGACTG +
Preference number: 1 (lower is better)
Translates to: GLYWRQKAEGRLFCL*VTALIRKSSTAHGL
Trigger: CAGTCCGTGGGCTGTGCTTGACTTCCTTATCAAGGCTGTCACTCAGAGACAGAAGAGTCTTCCTTCTGCTTTCTGCCTCCAATACAGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR TCA 90 bp GCTGGAGGCATCTCACAGAACCTCAGCAAGAGAAATGTCTTTGAGTaGCTCTGGACGATCCCGTTAGAGGTAAGATCCCAGAATTTCGGG +
Preference number: 1 (lower is better)
Translates to: AGGISQNLSKRNVFE*LWTIPLEVRSQNFG
Trigger: CCCGAAATTCTGGGATCTTACCTCTAACGGGATCGTCCAGAGTCACTCAAAGACATTTCTCTTGCTGAGGTTCTGTGAGATGCCTCCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 90 bp CGCTCCACTCCTCTGAGCAAGAAACCGGGTGTGATGGAAACACGCTaGACTTGCTGGTTTAAGAAAAAGGTGAACAGGAGCCTGTCTTTT +
Preference number: 1 (lower is better)
Translates to: RSTPLSKKPGVMETR*TCWFKKKVNRSLSF
Trigger: AAAAGACAGGCTCCTGTTCACCTTTTTCTTAAACCAGCAAGTCCAGCGTGTTTCCATCACACCCGGTTTCTTGCTCAGAGGAGTGGAGCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 90 bp TGCATAGAGTTTCTAAATGCAGCTCCCGAGGCTATCTCAGAGTCATaGGACAGACTGGGTCAAAAGAAGGAGGGCTGTATTGGAGGCAGA +
Preference number: 1 (lower is better)
Translates to: CIEFLNAAPEAISES*DRLGQKKEGCIGGR
Trigger: TCTGCCTCCAATACAGCCCTCCTTCTTTTGACCCAGTCTGTCCCATGACTCTGAGATAGCCTCGGGAGCTGCATTTAGAAACTCTATGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR GCA 90 bp CTTCAAACACAAACAGTTCACACACACCGGCCAGGCAAGTGGAAATaGATCTTGTCATTGAGTCCTCTTCTGGTAACTCCGGGTGAAACG +
Preference number: 1 (lower is better)
Translates to: LQTQTVHTHRPGKWK*ILSLSPLLVTPGET
Trigger: CGTTTCACCCGGAGTTACCAGAAGAGGACTCAATGACAAGATGCATTTCCACTTGCCTGGCCGGTGTGTGTGAACTGTTTGTGTTTGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR GCA 90 bp TATATATCTAAGCACAGTCTGGAGGACTCGAGGAGATGCCAGTCTTaGTATTTGAAAGCCTCAGACAAGGCACTGAAGTGGAGGCTCCAG +
Preference number: 1 (lower is better)
Translates to: YISKHSLEDSRRCQS*YLKASDKALKWRLQ
Trigger: CTGGAGCCTCCACTTCAGTGCCTTGTCTGAGGCTTTCAAATAGCAAGACTGGCATCTCCTCGAGTCCTCCAGACTGTGCTTAGATATATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR TCA 90 bp TGGAGCTGGAGGCATCTCACAGAACCTCAGCAAGAGAAATGTCTTTaGGTGACTCTGGACGATCCCGTTAGAGGTAAGATCCCAGAATTT +
Preference number: 1 (lower is better)
Translates to: WSWRHLTEPQQEKCL*VTLDDPVRGKIPEF
Trigger: AAATTCTGGGATCTTACCTCTAACGGGATCGTCCAGAGTCACTCAAAGACATTTCTCTTGCTGAGGTTCTGTGAGATGCCTCCAGCTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 90 bp TGGAACAAAGAATGGGGTTGCCTTCCCTTCCTGGATCACAATGTCTaGGGATTAGGATCCATCCATCATCCTAGCCAAGAACTGCATGAA +
Preference number: 1 (lower is better)
Translates to: WNKEWGCLPFLDHNV*GLGSIHHPSQELHE
Trigger: TTCATGCAGTTCTTGGCTAGGATGATGGATGGATCCTAATCCCCAGACATTGTGATCCAGGAAGGGAAGGCAACCCCATTCTTTGTTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR GCA 90 bp ACTCCTCTGAGCAAGAAACCGGGTGTGATGGAAACACGCTGGACTTaGTGGTTTAAGAAAAAGGTGAACAGGAGCCTGTCTTTTCAAAAA +
Preference number: 1 (lower is better)
Translates to: TPLSKKPGVMETRWT*WFKKKVNRSLSFQK
Trigger: TTTTTGAAAAGACAGGCTCCTGTTCACCTTTTTCTTAAACCAGCAAGTCCAGCGTGTTTCCATCACACCCGGTTTCTTGCTCAGAGGAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR GCA 90 bp GCCTTCCTTCTTAACACACAATGCATGACCCATAGAGAGCAGTTTTaGTTTCTATCCAATTTCAACCTAGCTGCTCTGGTCAACAAATCC +
Preference number: 1 (lower is better)
Translates to: AFLLNTQCMTHREQF*FLSNFNLAALVNKS
Trigger: GGATTTGTTGACCAGAGCAGCTAGGTTGAAATTGGATAGAAAGCAAAACTGCTCTCTATGGGTCATGCATTGTGTGTTAAGAAGGAAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR GCA 90 bp AGCTTACATCTCAGGGATAAAATAACTCCCACCATTGACTCAAGTTaGTTTAGTTTCTGCAGAACTACAGACTTCCATTATGCCTTCCTA +
Preference number: 1 (lower is better)
Translates to: SLHLRDKITPTIDSS*FSFCRTTDFHYAFL
Trigger: TAGGAAGGCATAATGGAAGTCTGTAGTTCTGCAGAAACTAAAGCAACTTGAGTCAATGGTGGGAGTTATTTTATCCCTGAGATGTAAGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 90 bp TATTCTTACAACACTCAAACGGCTTCTTACAAGAAACATGTCTTATaGTCTAGCTTATTTATTGTACCCATTTTGCCAAAGCACCCCAGG +
Preference number: 1 (lower is better)
Translates to: YSYNTQTASYKKHVL*SSLFIVPILPKHPR
Trigger: CCTGGGGTGCTTTGGCAAAATGGGTACAATAAATAAGCTAGACCATAAGACATGTTTCTTGTAAGAAGCCGTTTGAGTGTTGTAAGAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CAA 90 bp CTTGGCTCCTCTCCAGACCCTTCTGGCACCATCCTGCGCATTCCCTaGTGGCCAACCCGGATGCCACAGAGGATCAGCACCGCTCCACTC +
Preference number: 2 (lower is better)
Translates to: LGSSPDPSGTILRIP*WPTRMPQRISTAPL
Trigger: GAGTGGAGCGGTGCTGATCCTCTGTGGCATCCGGGTTGGCCACAAGGGAATGCGCAGGATGGTGCCAGAAGGGTCTGGAGAGGAGCCAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CAA 90 bp AGTCCAAGTGTGGAAGAGAGGCCAGCTTCCTCTGTCCTTGCCAGCTaGGCTCCTCTCCAGACCCTTCTGGCACCATCCTGCGCATTCCCT +
Preference number: 2 (lower is better)
Translates to: SPSVEERPASSVLAS*APLQTLLAPSCAFP
Trigger: AGGGAATGCGCAGGATGGTGCCAGAAGGGTCTGGAGAGGAGCCAAGCTGGCAAGGACAGAGGAAGCTGGCCTCTCTTCCACACTTGGACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CAA 90 bp ACTTTCAGAGTCCAAGTGTGGAAGAGAGGCCAGCTTCCTCTGTCCTaGCCAGCTTGGCTCCTCTCCAGACCCTTCTGGCACCATCCTGCG +
Preference number: 2 (lower is better)
Translates to: TFRVQVWKRGQLPLS*PAWLLSRPFWHHPA
Trigger: CGCAGGATGGTGCCAGAAGGGTCTGGAGAGGAGCCAAGCTGGCAAGGACAGAGGAAGCTGGCCTCTCTTCCACACTTGGACTCTGAAAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp AGGGGCCTCTGGGAACTGCAGCAAAACCGTGGAAACACTCACAGCTTTGCTGATGCTGAGCAGTGGGTGTaGACCCCAGGTGTGCTGGCT +
Preference number: 2 (lower is better)
Translates to: RGLWELQQNRGNTHSFADAEQWV*TPGVLA
Trigger: AGCCAGCACACCTGGGGTGCACACCCACTGCTCAGC...ATCAGCAAAGCTGTGAGTGTTTCCACGGTTTTGCTGCAGTTCCCAGAGGCCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp TTCAAGCAAGGGGCCTGTCGTCTTCTGAGCTGCGTAAATTTGTCTACAGTGGTGACATGCCCCTGGAGCTaGGCAGTGGGTGTGCACCCC +
Preference number: 2 (lower is better)
Translates to: FKQGACRLLSCVNLSTVVTCPWS*AVGVHP
Trigger: GGGGTGCACACCCACTGCTCAGCTCCAGGGGCATGT...CACCACTGTAGACAAATTTACGCAGCTCAGAAGACGACAGGCCCCTTGCTTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp TTGCCTTCCCTTCCTGGATCACAATGTCTGGGGATTAGGATCCATCCATCATCCCCCCCGGCCCTCTTCTaGGGCTGCTGGGTATCAATC +
Preference number: 2 (lower is better)
Translates to: LPSLPGSQCLGIRIHPSSPPALF*GCWVSI
Trigger: GATTGATACCCAGCAGCCTCAGAAGAGGGCCGGGGG...GGATGATGGATGGATCCTAATCCCCAGACATTGTGATCCAGGAAGGGAAGGCAA
56% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp AGGGGCCTCTGGGAACTGCAGCAAAACCGTGGAAACACTCACAGCTTTGCTGATCCTCAGACAAGGCACTaGAGTGGAGGCTCCAGGAGA +
Preference number: 2 (lower is better)
Translates to: RGLWELQQNRGNTHSFADPQTRH*SGGSRR
Trigger: TCTCCTGGAGCCTCCACTTCAGTGCCTTGTCTGAGG...ATCAGCAAAGCTGTGAGTGTTTCCACGGTTTTGCTGCAGTTCCCAGAGGCCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CAA 90 bp GGGGCCTCTGGGAACTGCAGCAAAACCGTGGAAACACTCACAGCTTaGCTGATGGAGCTGGAGGCATCTCACAGAACCTCAGCAAGAGAA +
Preference number: 2 (lower is better)
Translates to: GASGNCSKTVETLTA*LMELEASHRTSARE
Trigger: TTCTCTTGCTGAGGTTCTGTGAGATGCCTCCAGCTCCATCAGCAAAGCTGTGAGTGTTTCCACGGTTTTGCTGCAGTTCCCAGAGGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp AGGGGCCTCTGGGAACTGCAGCAAAACCGTGGAAACACTCACAGCTTTGCTGATCAGTGCTGTACCCTGTaGCCCCACATGGGAACCAAT +
Preference number: 2 (lower is better)
Translates to: RGLWELQQNRGNTHSFADQCCTL*PHMGTN
Trigger: ATTGGTTCCCATGTGGGGTCACAGGGTACAGCACTG...ATCAGCAAAGCTGTGAGTGTTTCCACGGTTTTGCTGCAGTTCCCAGAGGCCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp AAGAAGGAGGGCTGTATTGGAGGCAGAAAGCAGAAGGAAGACTCTTCTGTCTCTGCTGAGCAGTGGGTGTaGACCCCAGGTGTGCTGGCT +
Preference number: 2 (lower is better)
Translates to: KKEGCIGGRKQKEDSSVSAEQWV*TPGVLA
Trigger: AGCCAGCACACCTGGGGTGCACACCCACTGCTCAGC...AGAGACAGAAGAGTCTTCCTTCTGCTTTCTGCCTCCAATACAGCCCTCCTTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp GGAGACGCATGGAAAGCCATGAGCGGGGACAGGACCTCGAGGTCAATGGTAAGGAGATTGGTTTCTGGGTaGCTTTCAGAGTCCAAGTGT +
Preference number: 2 (lower is better)
Translates to: GDAWKAMSGDRTSRSMVRRLVSG*LSESKC
Trigger: ACACTTGGACTCTGAAAGTCACCCAGAAACCAATCT...CCTTACCATTGACCTCGAGGTCCTGTCCCCGCTCATGGCTTTCCATGCGTCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp TTGCCTTCCCTTCCTGGATCACAATGTCTGGGGATTAGGATCCATCCATCATCCCCTCAGACAAGGCACTaGAGTGGAGGCTCCAGGAGA +
Preference number: 2 (lower is better)
Translates to: LPSLPGSQCLGIRIHPSSPQTRH*SGGSRR
Trigger: TCTCCTGGAGCCTCCACTTCAGTGCCTTGTCTGAGG...GGATGATGGATGGATCCTAATCCCCAGACATTGTGATCCAGGAAGGGAAGGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp GGAGACGCATGGAAAGCCATGAGCGGGGACAGGACCTCGAGGTCAATGGTAAGGCTGGAGATTGGTTTCTaGGTGACTTTCAGAGTCCAA +
Preference number: 2 (lower is better)
Translates to: GDAWKAMSGDRTSRSMVRLEIGF*VTFRVQ
Trigger: TTGGACTCTGAAAGTCACCCAGAAACCAATCTCCAG...CCTTACCATTGACCTCGAGGTCCTGTCCCCGCTCATGGCTTTCCATGCGTCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp GGAGACGCATGGAAAGCCATGAGCGGGGACAGGACCTCGAGGTCAATGGTAAGGACACGCTGGACTTGCTaGTTTAAGAAAAAGGTGAAC +
Preference number: 2 (lower is better)
Translates to: GDAWKAMSGDRTSRSMVRTRWTC*FKKKVN
Trigger: GTTCACCTTTTTCTTAAACCAGCAAGTCCAGCGTGT...CCTTACCATTGACCTCGAGGTCCTGTCCCCGCTCATGGCTTTCCATGCGTCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp GAAACAGTGCCCTTGGCTGCCTTCCTTCTTAACACACAATGCATGACCCATAGACTGTCCTTGCCAGCTTaGCTCCTCTCCAGACCCTTC +
Preference number: 2 (lower is better)
Translates to: ETVPLAAFLLNTQCMTHRLSLPA*LLSRPF
Trigger: GAAGGGTCTGGAGAGGAGCCAAGCTGGCAAGGACAG...TCTATGGGTCATGCATTGTGTGTTAAGAAGGAAGGCAGCCAAGGGCACTGTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp GAAACAGTGCCCTTGGCTGCCTTCCTTCTTAACACACAATGCATGACCCATAGAGTCCCAGAACTGAGGTaGCTCCCTTCGGAGTACTCG +
Preference number: 2 (lower is better)
Translates to: ETVPLAAFLLNTQCMTHRVPELR*LPSEYS
Trigger: CGAGTACTCCGAAGGGAGCCACCTCAGTTCTGGGAC...TCTATGGGTCATGCATTGTGTGTTAAGAAGGAAGGCAGCCAAGGGCACTGTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp GAATTTCGGGAACATCTTATCTGCAGTTTCTGTGATCATGCCAGGAGATGCGGCGTCCCAGAACTGAGGTaGCTCCCTTCGGAGTACTCG +
Preference number: 2 (lower is better)
Translates to: EFREHLICSFCDHARRCGVPELR*LPSEYS
Trigger: CGAGTACTCCGAAGGGAGCCACCTCAGTTCTGGGAC...GCCGCATCTCCTGGCATGATCACAGAAACTGCAGATAAGATGTTCCCGAAATTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp AGGGGCCTCTGGGAACTGCAGCAAAACCGTGGAAACACTCACAGCTTTGCTGATCGTGAGCAAGAAAGCTaGGGCAAATCTGGGCAAAAG +
Preference number: 2 (lower is better)
Translates to: RGLWELQQNRGNTHSFADREQES*GKSGQK
Trigger: CTTTTGCCCAGATTTGCCCCAGCTTTCTTGCTCACG...ATCAGCAAAGCTGTGAGTGTTTCCACGGTTTTGCTGCAGTTCCCAGAGGCCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp ATAATTCTAATTTGCCCTAGAGAAAAATCACAGGGTTTGGGGGTTCACCCAAGGCCCCCGGCCCTCTTCTaGGGCTGCTGGGTATCAATC +
Preference number: 2 (lower is better)
Translates to: IILICPREKSQGLGVHPRPPALF*GCWVSI
Trigger: GATTGATACCCAGCAGCCTCAGAAGAGGGCCGGGGG...CCTTGGGTGAACCCCCAAACCCTGTGATTTTTCTCTAGGGCAAATTAGAATTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp GAAACAGTGCCCTTGGCTGCCTTCCTTCTTAACACACAATGCATGACCCATAGACAGTGCTGTACCCTGTaGCCCCACATGGGAACCAAT +
Preference number: 2 (lower is better)
Translates to: ETVPLAAFLLNTQCMTHRQCCTL*PHMGTN
Trigger: ATTGGTTCCCATGTGGGGTCACAGGGTACAGCACTG...TCTATGGGTCATGCATTGTGTGTTAAGAAGGAAGGCAGCCAAGGGCACTGTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp AGGGGCCTCTGGGAACTGCAGCAAAACCGTGGAAACACTCACAGCTTTGCTGATAGACTCTTCTGTCTCTaGGTGACAGCCTTGATAAGG +
Preference number: 2 (lower is better)
Translates to: RGLWELQQNRGNTHSFADRLFCL*VTALIR
Trigger: CCTTATCAAGGCTGTCACTCAGAGACAGAAGAGTCT...ATCAGCAAAGCTGTGAGTGTTTCCACGGTTTTGCTGCAGTTCCCAGAGGCCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp AAGAAGGAGGGCTGTATTGGAGGCAGAAAGCAGAAGGAAGACTCTTCTGTCTCTCTTCTGGCACCATCCTaGGCATTCCCTTGTGGCCAA +
Preference number: 2 (lower is better)
Translates to: KKEGCIGGRKQKEDSSVSLLAPS*AFPCGQ
Trigger: TTGGCCACAAGGGAATGCGCAGGATGGTGCCAGAAG...AGAGACAGAAGAGTCTTCCTTCTGCTTTCTGCCTCCAATACAGCCCTCCTTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp GAAACAGTGCCCTTGGCTGCCTTCCTTCTTAACACACAATGCATGACCCATAGACTTCTGGCACCATCCTaGGCATTCCCTTGTGGCCAA +
Preference number: 2 (lower is better)
Translates to: ETVPLAAFLLNTQCMTHRLLAPS*AFPCGQ
Trigger: TTGGCCACAAGGGAATGCGCAGGATGGTGCCAGAAG...TCTATGGGTCATGCATTGTGTGTTAAGAAGGAAGGCAGCCAAGGGCACTGTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp AGGGGCCTCTGGGAACTGCAGCAAAACCGTGGAAACACTCACAGCTTTGCTGATAGATCGCCACCCATCTaGGAGAGGCACAATATACAA +
Preference number: 2 (lower is better)
Translates to: RGLWELQQNRGNTHSFADRSPPI*ERHNIQ
Trigger: TTGTATATTGTGCCTCTCCCAGATGGGTGGCGATCT...ATCAGCAAAGCTGTGAGTGTTTCCACGGTTTTGCTGCAGTTCCCAGAGGCCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp AGGGGCCTCTGGGAACTGCAGCAAAACCGTGGAAACACTCACAGCTTTGCTGATCCAGCTTCAGCCTCATaGCACAAAGATGATTTCCTC +
Preference number: 2 (lower is better)
Translates to: RGLWELQQNRGNTHSFADPASAS*HKDDFL
Trigger: GAGGAAATCATCTTTGTGCCATGAGGCTGAAGCTGG...ATCAGCAAAGCTGTGAGTGTTTCCACGGTTTTGCTGCAGTTCCCAGAGGCCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp AGGGGCCTCTGGGAACTGCAGCAAAACCGTGGAAACACTCACAGCTTTGCTGATAGAAATGTCTTTGAGTaGCTCTGGACGATCCCGTTA +
Preference number: 2 (lower is better)
Translates to: RGLWELQQNRGNTHSFADRNVFE*LWTIPL
Trigger: TAACGGGATCGTCCAGAGTCACTCAAAGACATTTCT...ATCAGCAAAGCTGTGAGTGTTTCCACGGTTTTGCTGCAGTTCCCAGAGGCCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp AGGGGCCTCTGGGAACTGCAGCAAAACCGTGGAAACACTCACAGCTTTGCTGATGAAACCATGAGACTCTaGTCCTTTCTGTCTTGTCTC +
Preference number: 2 (lower is better)
Translates to: RGLWELQQNRGNTHSFADETMRL*SFLSCL
Trigger: GAGACAAGACAGAAAGGAGCAGAGTCTCATGGTTTC...ATCAGCAAAGCTGTGAGTGTTTCCACGGTTTTGCTGCAGTTCCCAGAGGCCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp TTGCCTTCCCTTCCTGGATCACAATGTCTGGGGATTAGGATCCATCCATCATCCCACCGGCCAGGCAAGTaGAAATGCATCTTGTCATTG +
Preference number: 2 (lower is better)
Translates to: LPSLPGSQCLGIRIHPSSHRPGK*KCILSL
Trigger: CAATGACAAGATGCATTTCCACTTGCCTGGCCGGTG...GGATGATGGATGGATCCTAATCCCCAGACATTGTGATCCAGGAAGGGAAGGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp TTCAAGCAAGGGGCCTGTCGTCTTCTGAGCTGCGTAAATTTGTCTACAGTGGTGCACCGGCCAGGCAAGTaGAAATGCATCTTGTCATTG +
Preference number: 2 (lower is better)
Translates to: FKQGACRLLSCVNLSTVVHRPGK*KCILSL
Trigger: CAATGACAAGATGCATTTCCACTTGCCTGGCCGGTG...CACCACTGTAGACAAATTTACGCAGCTCAGAAGACGACAGGCCCCTTGCTTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp AGGGGCCTCTGGGAACTGCAGCAAAACCGTGGAAACACTCACAGCTTTGCTGATCTGGATCACAATGTCTaGGGATTAGGATCCATCCAT +
Preference number: 2 (lower is better)
Translates to: RGLWELQQNRGNTHSFADLDHNV*GLGSIH
Trigger: ATGGATGGATCCTAATCCCCAGACATTGTGATCCAG...ATCAGCAAAGCTGTGAGTGTTTCCACGGTTTTGCTGCAGTTCCCAGAGGCCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp GAAACAGTGCCCTTGGCTGCCTTCCTTCTTAACACACAATGCATGACCCATAGAGCCAGTCTTGCTATTTaGAAGCCTCAGACAAGGCAC +
Preference number: 2 (lower is better)
Translates to: ETVPLAAFLLNTQCMTHRASLAI*KPQTRH
Trigger: GTGCCTTGTCTGAGGCTTTCAAATAGCAAGACTGGC...TCTATGGGTCATGCATTGTGTGTTAAGAAGGAAGGCAGCCAAGGGCACTGTTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp ATAATTCTAATTTGCCCTAGAGAAAAATCACAGGGTTTGGGGGTTCACCCAAGGCTGTCCTTGCCAGCTTaGCTCCTCTCCAGACCCTTC +
Preference number: 2 (lower is better)
Translates to: IILICPREKSQGLGVHPRLSLPA*LLSRPF
Trigger: GAAGGGTCTGGAGAGGAGCCAAGCTGGCAAGGACAG...CCTTGGGTGAACCCCCAAACCCTGTGATTTTTCTCTAGGGCAAATTAGAATTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp ATAATTCTAATTTGCCCTAGAGAAAAATCACAGGGTTTGGGGGTTCACCCAAGGGTCCCAGAACTGAGGTaGCTCCCTTCGGAGTACTCG +
Preference number: 2 (lower is better)
Translates to: IILICPREKSQGLGVHPRVPELR*LPSEYS
Trigger: CGAGTACTCCGAAGGGAGCCACCTCAGTTCTGGGAC...CCTTGGGTGAACCCCCAAACCCTGTGATTTTTCTCTAGGGCAAATTAGAATTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp GAATTTCGGGAACATCTTATCTGCAGTTTCTGTGATCATGCCAGGAGATGCGGCCACCGGCCAGGCAAGTaGAAATGCATCTTGTCATTG +
Preference number: 2 (lower is better)
Translates to: EFREHLICSFCDHARRCGHRPGK*KCILSL
Trigger: CAATGACAAGATGCATTTCCACTTGCCTGGCCGGTG...GCCGCATCTCCTGGCATGATCACAGAAACTGCAGATAAGATGTTCCCGAAATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp GAATTTCGGGAACATCTTATCTGCAGTTTCTGTGATCATGCCAGGAGATGCGGCGTTGCCTTCCCTTCCTaGATCACAATGTCTGGGGAT +
Preference number: 2 (lower is better)
Translates to: EFREHLICSFCDHARRCGVAFPS*ITMSGD
Trigger: ATCCCCAGACATTGTGATCCAGGAAGGGAAGGCAAC...GCCGCATCTCCTGGCATGATCACAGAAACTGCAGATAAGATGTTCCCGAAATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp AGGGGCCTCTGGGAACTGCAGCAAAACCGTGGAAACACTCACAGCTTTGCTGATGCACCCCAGGGAATTTaGGGAAATAAATATGGAACA +
Preference number: 2 (lower is better)
Translates to: RGLWELQQNRGNTHSFADAPQGI*GNKYGT
Trigger: TGTTCCATATTTATTTCCCCAAATTCCCTGGGGTGC...ATCAGCAAAGCTGTGAGTGTTTCCACGGTTTTGCTGCAGTTCCCAGAGGCCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp TTCAAGCAAGGGGCCTGTCGTCTTCTGAGCTGCGTAAATTTGTCTACAGTGGTGTTGACTCGGAATGTCTaGAGATCATCCATACCACTG +
Preference number: 2 (lower is better)
Translates to: FKQGACRLLSCVNLSTVVLTRNV*RSSIPL
Trigger: CAGTGGTATGGATGATCTTCAGACATTCCGAGTCAA...CACCACTGTAGACAAATTTACGCAGCTCAGAAGACGACAGGCCCCTTGCTTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp CGGCTTCTTACAAGAAACATGTCTTATGGTCTAGCTTATTTATTGTACCCATTTACATGCCCCTGGAGCTaGGCAGTGGGTGTGCACCCC +
Preference number: 2 (lower is better)
Translates to: RLLTRNMSYGLAYLLYPFTCPWS*AVGVHP
Trigger: GGGGTGCACACCCACTGCTCAGCTCCAGGGGCATGT...AAATGGGTACAATAAATAAGCTAGACCATAAGACATGTTTCTTGTAAGAAGCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp GAATTTCGGGAACATCTTATCTGCAGTTTCTGTGATCATGCCAGGAGATGCGGCAGACTCTTCTGTCTCTaGGTGACAGCCTTGATAAGG +
Preference number: 2 (lower is better)
Translates to: EFREHLICSFCDHARRCGRLFCL*VTALIR
Trigger: CCTTATCAAGGCTGTCACTCAGAGACAGAAGAGTCT...GCCGCATCTCCTGGCATGATCACAGAAACTGCAGATAAGATGTTCCCGAAATTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp TTGCCTTCCCTTCCTGGATCACAATGTCTGGGGATTAGGATCCATCCATCATCCCCAGGCAAGTGGAAATaGATCTTGTCATTGAGTCCT +
Preference number: 2 (lower is better)
Translates to: LPSLPGSQCLGIRIHPSSPGKWK*ILSLSP
Trigger: AGGACTCAATGACAAGATGCATTTCCACTTGCCTGG...GGATGATGGATGGATCCTAATCCCCAGACATTGTGATCCAGGAAGGGAAGGCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp TTGCCTTCCCTTCCTGGATCACAATGTCTGGGGATTAGGATCCATCCATCATCCAGGAGATGCCAGTCTTaGTATTTGAAAGCCTCAGAC +
Preference number: 2 (lower is better)
Translates to: LPSLPGSQCLGIRIHPSSRRCQS*YLKASD
Trigger: GTCTGAGGCTTTCAAATAGCAAGACTGGCATCTCCT...GGATGATGGATGGATCCTAATCCCCAGACATTGTGATCCAGGAAGGGAAGGCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp GAATTTCGGGAACATCTTATCTGCAGTTTCTGTGATCATGCCAGGAGATGCGGCAACAAAGAATGGGGTTaGCTTCCCTTCCTGGATCAC +
Preference number: 2 (lower is better)
Translates to: EFREHLICSFCDHARRCGNKEWG*LPFLDH
Trigger: GTGATCCAGGAAGGGAAGGCAACCCCATTCTTTGTT...GCCGCATCTCCTGGCATGATCACAGAAACTGCAGATAAGATGTTCCCGAAATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp TTGCCTTCCCTTCCTGGATCACAATGTCTGGGGATTAGGATCCATCCATCATCCCTGGAGATTGGTTTCTaGGTGACTTTCAGAGTCCAA +
Preference number: 2 (lower is better)
Translates to: LPSLPGSQCLGIRIHPSSLEIGF*VTFRVQ
Trigger: TTGGACTCTGAAAGTCACCCAGAAACCAATCTCCAG...GGATGATGGATGGATCCTAATCCCCAGACATTGTGATCCAGGAAGGGAAGGCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp AAGAAGGAGGGCTGTATTGGAGGCAGAAAGCAGAAGGAAGACTCTTCTGTCTCTAGATCGCCACCCATCTaGGAGAGGCACAATATACAA +
Preference number: 2 (lower is better)
Translates to: KKEGCIGGRKQKEDSSVSRSPPI*ERHNIQ
Trigger: TTGTATATTGTGCCTCTCCCAGATGGGTGGCGATCT...AGAGACAGAAGAGTCTTCCTTCTGCTTTCTGCCTCCAATACAGCCCTCCTTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp TTGCCTTCCCTTCCTGGATCACAATGTCTGGGGATTAGGATCCATCCATCATCCAAGAAACAGTGCCCTTaGCTGCCTTCCTTCTTAACA +
Preference number: 2 (lower is better)
Translates to: LPSLPGSQCLGIRIHPSSKKQCP*LPSFLT
Trigger: TGTTAAGAAGGAAGGCAGCCAAGGGCACTGTTTCTT...GGATGATGGATGGATCCTAATCCCCAGACATTGTGATCCAGGAAGGGAAGGCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp GAAACAGTGCCCTTGGCTGCCTTCCTTCTTAACACACAATGCATGACCCATAGAAGATTGGTTTCTGGGTaGCTTTCAGAGTCCAAGTGT +
Preference number: 2 (lower is better)
Translates to: ETVPLAAFLLNTQCMTHRRLVSG*LSESKC
Trigger: ACACTTGGACTCTGAAAGTCACCCAGAAACCAATCT...TCTATGGGTCATGCATTGTGTGTTAAGAAGGAAGGCAGCCAAGGGCACTGTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp AAGAAGGAGGGCTGTATTGGAGGCAGAAAGCAGAAGGAAGACTCTTCTGTCTCTTTGACTCGGAATGTCTaGAGATCATCCATACCACTG +
Preference number: 2 (lower is better)
Translates to: KKEGCIGGRKQKEDSSVSLTRNV*RSSIPL
Trigger: CAGTGGTATGGATGATCTTCAGACATTCCGAGTCAA...AGAGACAGAAGAGTCTTCCTTCTGCTTTCTGCCTCCAATACAGCCCTCCTTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp TTCAAGCAAGGGGCCTGTCGTCTTCTGAGCTGCGTAAATTTGTCTACAGTGGTGCACGAGCTACTTATTTaGTTTGTCTCTCTTGTCCAG +
Preference number: 2 (lower is better)
Translates to: FKQGACRLLSCVNLSTVVHELLI*FVSLVQ
Trigger: CTGGACAAGAGAGACAAAGCAAATAAGTAGCTCGTG...CACCACTGTAGACAAATTTACGCAGCTCAGAAGACGACAGGCCCCTTGCTTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp GAAACAGTGCCCTTGGCTGCCTTCCTTCTTAACACACAATGCATGACCCATAGACCAGGCAAGTGGAAATaGATCTTGTCATTGAGTCCT +
Preference number: 2 (lower is better)
Translates to: ETVPLAAFLLNTQCMTHRPGKWK*ILSLSP
Trigger: AGGACTCAATGACAAGATGCATTTCCACTTGCCTGG...TCTATGGGTCATGCATTGTGTGTTAAGAAGGAAGGCAGCCAAGGGCACTGTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp AAGAAGGAGGGCTGTATTGGAGGCAGAAAGCAGAAGGAAGACTCTTCTGTCTCTGAAACCATGAGACTCTaGTCCTTTCTGTCTTGTCTC +
Preference number: 2 (lower is better)
Translates to: KKEGCIGGRKQKEDSSVSETMRL*SFLSCL
Trigger: GAGACAAGACAGAAAGGAGCAGAGTCTCATGGTTTC...AGAGACAGAAGAGTCTTCCTTCTGCTTTCTGCCTCCAATACAGCCCTCCTTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp AGGGGCCTCTGGGAACTGCAGCAAAACCGTGGAAACACTCACAGCTTTGCTGATAGGAGATACATGGCCTaGTTAGATAAAACACAAACT +
Preference number: 2 (lower is better)
Translates to: RGLWELQQNRGNTHSFADRRYMA*LDKTQT
Trigger: AGTTTGTGTTTTATCTAAGCAGGCCATGTATCTCCT...ATCAGCAAAGCTGTGAGTGTTTCCACGGTTTTGCTGCAGTTCCCAGAGGCCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp AGACTTCCATTATGCCTTCCTAGCTTTCTAGAGAAAATATTCTTACAACACTCAGCTGAGCAGTGGGTGTaGACCCCAGGTGTGCTGGCT +
Preference number: 2 (lower is better)
Translates to: RLPLCLPSFLEKIFLQHSAEQWV*TPGVLA
Trigger: AGCCAGCACACCTGGGGTGCACACCCACTGCTCAGC...TGAGTGTTGTAAGAATATTTTCTCTAGAAAGCTAGGAAGGCATAATGGAAGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp AGGGGCCTCTGGGAACTGCAGCAAAACCGTGGAAACACTCACAGCTTTGCTGATAGTTGCTTTAGTTTCTaGAGAACTACAGACTTCCAT +
Preference number: 2 (lower is better)
Translates to: RGLWELQQNRGNTHSFADSCFSF*RTTDFH
Trigger: ATGGAAGTCTGTAGTTCTGCAGAAACTAAAGCAACT...ATCAGCAAAGCTGTGAGTGTTTCCACGGTTTTGCTGCAGTTCCCAGAGGCCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp GAAACAGTGCCCTTGGCTGCCTTCCTTCTTAACACACAATGCATGACCCATAGACTGGAGATTGGTTTCTaGGTGACTTTCAGAGTCCAA +
Preference number: 2 (lower is better)
Translates to: ETVPLAAFLLNTQCMTHRLEIGF*VTFRVQ
Trigger: TTGGACTCTGAAAGTCACCCAGAAACCAATCTCCAG...TCTATGGGTCATGCATTGTGTGTTAAGAAGGAAGGCAGCCAAGGGCACTGTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp AGACTTCCATTATGCCTTCCTAGCTTTCTAGAGAAAATATTCTTACAACACTCACCTGGAGCTGAGCAGTaGGTGTGCACCCCAGGTGTG +
Preference number: 2 (lower is better)
Translates to: RLPLCLPSFLEKIFLQHSPGAEQ*VCTPGV
Trigger: CACACCTGGGGTGCACACCCACTGCTCAGCTCCAGG...TGAGTGTTGTAAGAATATTTTCTCTAGAAAGCTAGGAAGGCATAATGGAAGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp GAAACAGTGCCCTTGGCTGCCTTCCTTCTTAACACACAATGCATGACCCATAGAGGTTTAAGAAAAAGGTaGACAGGAGCCTGTCTTTTC +
Preference number: 2 (lower is better)
Translates to: ETVPLAAFLLNTQCMTHRGLRKR*TGACLF
Trigger: GAAAAGACAGGCTCCTGTTCACCTTTTTCTTAAACC...TCTATGGGTCATGCATTGTGTGTTAAGAAGGAAGGCAGCCAAGGGCACTGTTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp AAGAAGGAGGGCTGTATTGGAGGCAGAAAGCAGAAGGAAGACTCTTCTGTCTCTCCCCCAGCCATTTTATaGTCTTTAGTCTGCATCTAT +
Preference number: 2 (lower is better)
Translates to: KKEGCIGGRKQKEDSSVSPPAIL*SLVCIY
Trigger: ATAGATGCAGACTAAAGATCATAAAATGGCTGGGGG...AGAGACAGAAGAGTCTTCCTTCTGCTTTCTGCCTCCAATACAGCCCTCCTTCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp GAATTTCGGGAACATCTTATCTGCAGTTTCTGTGATCATGCCAGGAGATGCGGCTGTCGTCTTCTGAGCTaGGTAAATTTGTCTACAGTG +
Preference number: 2 (lower is better)
Translates to: EFREHLICSFCDHARRCGCRLLS*VNLSTV
Trigger: CACTGTAGACAAATTTACGCAGCTCAGAAGACGACA...GCCGCATCTCCTGGCATGATCACAGAAACTGCAGATAAGATGTTCCCGAAATTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp AGACTTCCATTATGCCTTCCTAGCTTTCTAGAGAAAATATTCTTACAACACTCAAGTGTGTCCCAGAACTaGGGTGGCTCCCTTCGGAGT +
Preference number: 2 (lower is better)
Translates to: RLPLCLPSFLEKIFLQHSSVSQN*GGSLRS
Trigger: ACTCCGAAGGGAGCCACCTCAGTTCTGGGACACACT...TGAGTGTTGTAAGAATATTTTCTCTAGAAAGCTAGGAAGGCATAATGGAAGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp TTGCCTTCCCTTCCTGGATCACAATGTCTGGGGATTAGGATCCATCCATCATCCAGGAGATACATGGCCTaGTTAGATAAAACACAAACT +
Preference number: 2 (lower is better)
Translates to: LPSLPGSQCLGIRIHPSSRRYMA*LDKTQT
Trigger: AGTTTGTGTTTTATCTAAGCAGGCCATGTATCTCCT...GGATGATGGATGGATCCTAATCCCCAGACATTGTGATCCAGGAAGGGAAGGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp AAGAAGGAGGGCTGTATTGGAGGCAGAAAGCAGAAGGAAGACTCTTCTGTCTCTTATGTTGCTCTCTTCTaGAATATAAAGGAGGGGTCA +
Preference number: 2 (lower is better)
Translates to: KKEGCIGGRKQKEDSSVSYVALF*NIKEGS
Trigger: TGACCCCTCCTTTATATTCCAGAAGAGAGCAACATA...AGAGACAGAAGAGTCTTCCTTCTGCTTTCTGCCTCCAATACAGCCCTCCTTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp ATAATTCTAATTTGCCCTAGAGAAAAATCACAGGGTTTGGGGGTTCACCCAAGGCCCGATCAATGTCCTTaGGGGTTCATAAAGCATCCT +
Preference number: 2 (lower is better)
Translates to: IILICPREKSQGLGVHPRPDQCP*GFIKHP
Trigger: AGGATGCTTTATGAACCCCCAAGGACATTGATCGGG...CCTTGGGTGAACCCCCAAACCCTGTGATTTTTCTCTAGGGCAAATTAGAATTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp AGACTTCCATTATGCCTTCCTAGCTTTCTAGAGAAAATATTCTTACAACACTCACAGTGCTGTACCCTGTaGCCCCACATGGGAACCAAT +
Preference number: 2 (lower is better)
Translates to: RLPLCLPSFLEKIFLQHSQCCTL*PHMGTN
Trigger: ATTGGTTCCCATGTGGGGTCACAGGGTACAGCACTG...TGAGTGTTGTAAGAATATTTTCTCTAGAAAGCTAGGAAGGCATAATGGAAGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp TTCAAGCAAGGGGCCTGTCGTCTTCTGAGCTGCGTAAATTTGTCTACAGTGGTGCATAGAGAGCAGTTTTaGTTTCTATCCAATTTCAAC +
Preference number: 2 (lower is better)
Translates to: FKQGACRLLSCVNLSTVVHREQF*FLSNFN
Trigger: GTTGAAATTGGATAGAAAGCAAAACTGCTCTCTATG...CACCACTGTAGACAAATTTACGCAGCTCAGAAGACGACAGGCCCCTTGCTTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp TTGCCTTCCCTTCCTGGATCACAATGTCTGGGGATTAGGATCCATCCATCATCCCATAGAGAGCAGTTTTaGTTTCTATCCAATTTCAAC +
Preference number: 2 (lower is better)
Translates to: LPSLPGSQCLGIRIHPSSHREQF*FLSNFN
Trigger: GTTGAAATTGGATAGAAAGCAAAACTGCTCTCTATG...GGATGATGGATGGATCCTAATCCCCAGACATTGTGATCCAGGAAGGGAAGGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp GAATTTCGGGAACATCTTATCTGCAGTTTCTGTGATCATGCCAGGAGATGCGGCCATAGAGAGCAGTTTTaGTTTCTATCCAATTTCAAC +
Preference number: 2 (lower is better)
Translates to: EFREHLICSFCDHARRCGHREQF*FLSNFN
Trigger: GTTGAAATTGGATAGAAAGCAAAACTGCTCTCTATG...GCCGCATCTCCTGGCATGATCACAGAAACTGCAGATAAGATGTTCCCGAAATTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp GAATTTCGGGAACATCTTATCTGCAGTTTCTGTGATCATGCCAGGAGATGCGGCGTGAACTCTGAACAATaGATAGAGTTTCTAAATGCA +
Preference number: 2 (lower is better)
Translates to: EFREHLICSFCDHARRCGVNSEQ*IEFLNA
Trigger: TGCATTTAGAAACTCTATGCATTGTTCAGAGTTCAC...GCCGCATCTCCTGGCATGATCACAGAAACTGCAGATAAGATGTTCCCGAAATTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp AGACTTCCATTATGCCTTCCTAGCTTTCTAGAGAAAATATTCTTACAACACTCAGCCAGTCTTGCTATTTaGAAGCCTCAGACAAGGCAC +
Preference number: 2 (lower is better)
Translates to: RLPLCLPSFLEKIFLQHSASLAI*KPQTRH
Trigger: GTGCCTTGTCTGAGGCTTTCAAATAGCAAGACTGGC...TGAGTGTTGTAAGAATATTTTCTCTAGAAAGCTAGGAAGGCATAATGGAAGTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp CGGCTTCTTACAAGAAACATGTCTTATGGTCTAGCTTATTTATTGTACCCATTTAACAAAGAATGGGGTTaGCTTCCCTTCCTGGATCAC +
Preference number: 2 (lower is better)
Translates to: RLLTRNMSYGLAYLLYPFNKEWG*LPFLDH
Trigger: GTGATCCAGGAAGGGAAGGCAACCCCATTCTTTGTT...AAATGGGTACAATAAATAAGCTAGACCATAAGACATGTTTCTTGTAAGAAGCCG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp AGACTTCCATTATGCCTTCCTAGCTTTCTAGAGAAAATATTCTTACAACACTCAGGTAAGGCTGGAGATTaGTTTCTGGGTGACTTTCAG +
Preference number: 2 (lower is better)
Translates to: RLPLCLPSFLEKIFLQHSGKAGD*FLGDFQ
Trigger: CTGAAAGTCACCCAGAAACCAATCTCCAGCCTTACC...TGAGTGTTGTAAGAATATTTTCTCTAGAAAGCTAGGAAGGCATAATGGAAGTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp CGGCTTCTTACAAGAAACATGTCTTATGGTCTAGCTTATTTATTGTACCCATTTGGTAAGGCTGGAGATTaGTTTCTGGGTGACTTTCAG +
Preference number: 2 (lower is better)
Translates to: RLLTRNMSYGLAYLLYPFGKAGD*FLGDFQ
Trigger: CTGAAAGTCACCCAGAAACCAATCTCCAGCCTTACC...AAATGGGTACAATAAATAAGCTAGACCATAAGACATGTTTCTTGTAAGAAGCCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp AGACTTCCATTATGCCTTCCTAGCTTTCTAGAGAAAATATTCTTACAACACTCACCCGATCAATGTCCTTaGGGGTTCATAAAGCATCCT +
Preference number: 2 (lower is better)
Translates to: RLPLCLPSFLEKIFLQHSPDQCP*GFIKHP
Trigger: AGGATGCTTTATGAACCCCCAAGGACATTGATCGGG...TGAGTGTTGTAAGAATATTTTCTCTAGAAAGCTAGGAAGGCATAATGGAAGTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp AGACTTCCATTATGCCTTCCTAGCTTTCTAGAGAAAATATTCTTACAACACTCAAGATCGCCACCCATCTaGGAGAGGCACAATATACAA +
Preference number: 2 (lower is better)
Translates to: RLPLCLPSFLEKIFLQHSRSPPI*ERHNIQ
Trigger: TTGTATATTGTGCCTCTCCCAGATGGGTGGCGATCT...TGAGTGTTGTAAGAATATTTTCTCTAGAAAGCTAGGAAGGCATAATGGAAGTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp CGGCTTCTTACAAGAAACATGTCTTATGGTCTAGCTTATTTATTGTACCCATTTCCAGCTTCAGCCTCATaGCACAAAGATGATTTCCTC +
Preference number: 2 (lower is better)
Translates to: RLLTRNMSYGLAYLLYPFPASAS*HKDDFL
Trigger: GAGGAAATCATCTTTGTGCCATGAGGCTGAAGCTGG...AAATGGGTACAATAAATAAGCTAGACCATAAGACATGTTTCTTGTAAGAAGCCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR GCA 90 bp AGACTTCCATTATGCCTTCCTAGCTTTCTAGAGAAAATATTCTTACAACACTCAAGGAGATGCCAGTCTTaGTATTTGAAAGCCTCAGAC +
Preference number: 2 (lower is better)
Translates to: RLPLCLPSFLEKIFLQHSRRCQS*YLKASD
Trigger: GTCTGAGGCTTTCAAATAGCAAGACTGGCATCTCCT...TGAGTGTTGTAAGAATATTTTCTCTAGAAAGCTAGGAAGGCATAATGGAAGTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp AGACTTCCATTATGCCTTCCTAGCTTTCTAGAGAAAATATTCTTACAACACTCAAAGAAACAGTGCCCTTaGCTGCCTTCCTTCTTAACA +
Preference number: 2 (lower is better)
Translates to: RLPLCLPSFLEKIFLQHSKKQCP*LPSFLT
Trigger: TGTTAAGAAGGAAGGCAGCCAAGGGCACTGTTTCTT...TGAGTGTTGTAAGAATATTTTCTCTAGAAAGCTAGGAAGGCATAATGGAAGTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp CGGCTTCTTACAAGAAACATGTCTTATGGTCTAGCTTATTTATTGTACCCATTTGGTTTAAGAAAAAGGTaGACAGGAGCCTGTCTTTTC +
Preference number: 2 (lower is better)
Translates to: RLLTRNMSYGLAYLLYPFGLRKR*TGACLF
Trigger: GAAAAGACAGGCTCCTGTTCACCTTTTTCTTAAACC...AAATGGGTACAATAAATAAGCTAGACCATAAGACATGTTTCTTGTAAGAAGCCG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR TCA 90 bp AGACTTCCATTATGCCTTCCTAGCTTTCTAGAGAAAATATTCTTACAACACTCACCCCCAGCCATTTTATaGTCTTTAGTCTGCATCTAT +
Preference number: 2 (lower is better)
Translates to: RLPLCLPSFLEKIFLQHSPPAIL*SLVCIY
Trigger: ATAGATGCAGACTAAAGATCATAAAATGGCTGGGGG...TGAGTGTTGTAAGAATATTTTCTCTAGAAAGCTAGGAAGGCATAATGGAAGTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp AGACTTCCATTATGCCTTCCTAGCTTTCTAGAGAAAATATTCTTACAACACTCAACACGCTGGACTTGCTaGTTTAAGAAAAAGGTGAAC +
Preference number: 2 (lower is better)
Translates to: RLPLCLPSFLEKIFLQHSTRWTC*FKKKVN
Trigger: GTTCACCTTTTTCTTAAACCAGCAAGTCCAGCGTGT...TGAGTGTTGTAAGAATATTTTCTCTAGAAAGCTAGGAAGGCATAATGGAAGTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CCA 90 bp CGGCTTCTTACAAGAAACATGTCTTATGGTCTAGCTTATTTATTGTACCCATTTACACGCTGGACTTGCTaGTTTAAGAAAAAGGTGAAC +
Preference number: 2 (lower is better)
Translates to: RLLTRNMSYGLAYLLYPFTRWTC*FKKKVN
Trigger: GTTCACCTTTTTCTTAAACCAGCAAGTCCAGCGTGT...AAATGGGTACAATAAATAAGCTAGACCATAAGACATGTTTCTTGTAAGAAGCCG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CAA 90 bp TACAAGAAACATGTCTTATGGTCTAGCTTATTTATTGTACCCATTTaGCCAAAGCACCCCAGGGAATTTGGGGAAATAAATATGGAACAA +
Preference number: 2 (lower is better)
Translates to: YKKHVLWSSLFIVPI*PKHPREFGEINMEQ
Trigger: TTGTTCCATATTTATTTCCCCAAATTCCCTGGGGTGCTTTGGCAAAATGGGTACAATAAATAAGCTAGACCATAAGACATGTTTCTTGTA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 72 bp CTGTCCTTGCCAGCTTGGCTCCTCTCCAGACCCTTCTaGCACCATCCTGCGCATTCCCTTGTGGCCAACCCG +
Preference number: 3 (lower is better)
Translates to: LSLPAWLLSRPF*HHPAHSLVANP
Trigger: CGGGTTGGCCACAAGGGAATGCGCAGGATGGTGCCAGAAGGGTCTGGAGAGGAGCCAAGCTGGCAAGGACAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR GCA 72 bp AGCTTGGCTCCTCTCCAGACCCTTCTGGCACCATCCTaGGCATTCCCTTGTGGCCAACCCGGATGCCACAGA +
Preference number: 3 (lower is better)
Translates to: SLAPLQTLLAPS*AFPCGQPGCHR
Trigger: TCTGTGGCATCCGGGTTGGCCACAAGGGAATGCGCAGGATGGTGCCAGAAGGGTCTGGAGAGGAGCCAAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CAA 90 bp GGAGACGCATGGAAAGCCATGAGCGGGGACAGGACCTCGAGGTCAATGGTAAGGTCTGTCCTTGCCAGCTaGGCTCCTCTCCAGACCCTT +
Preference number: 3 (lower is better)
Translates to: GDAWKAMSGDRTSRSMVRSVLAS*APLQTL
Trigger: AAGGGTCTGGAGAGGAGCCAAGCTGGCAAGGACAGA...CCTTACCATTGACCTCGAGGTCCTGTCCCCGCTCATGGCTTTCCATGCGTCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR TCA 72 bp CAGGGCTACGTCCAGTGGCCCCCACCTCCGAAACCATaGGACTCTGCTCCTTTCTGTCTTGTCTCAGGGAAA +
Preference number: 3 (lower is better)
Translates to: QGYVQWPPPPKP*DSAPFCLVSGK
Trigger: TTTCCCTGAGACAAGACAGAAAGGAGCAGAGTCTCATGGTTTCGGAGGTGGGGGCCACTGGACGTAGCCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 72 bp GGGTATCAATCAGGCCAGTGTGTCCCAGAACTGAGGTaGCTCCCTTCGGAGTACTCGTGGAATGAAGGAGAC +
Preference number: 3 (lower is better)
Translates to: GYQSGQCVPELR*LPSEYSWNEGD
Trigger: GTCTCCTTCATTCCACGAGTACTCCGAAGGGAGCCACCTCAGTTCTGGGACACACTGGCCTGATTGATACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR GCA 72 bp CGTCCAGTGGCCCCCACCTCCGAAACCATGAGACTCTaGTCCTTTCTGTCTTGTCTCAGGGAAACATCACTT +
Preference number: 3 (lower is better)
Translates to: RPVAPTSETMRL*SFLSCLRETSL
Trigger: AAGTGATGTTTCCCTGAGACAAGACAGAAAGGAGCAGAGTCTCATGGTTTCGGAGGTGGGGGCCACTGGACG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 72 bp CAGCTCCCGAGGCTATCTCAGAGTCATGGGACAGACTaGGTCAAAAGAAGGAGGGCTGTATTGGAGGCAGAA +
Preference number: 3 (lower is better)
Translates to: QLPRLSQSHGTD*VKRRRAVLEAE
Trigger: TTCTGCCTCCAATACAGCCCTCCTTCTTTTGACCCAGTCTGTCCCATGACTCTGAGATAGCCTCGGGAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR TCA 72 bp ATCTGCAGTTTCTGTGATCATGCCAGGAGATGCGGCTaGGTGCAGATTTCCCAGAATCAGGAGCCACCAAGC +
Preference number: 3 (lower is better)
Translates to: ICSFCDHARRCG*VQISQNQEPPS
Trigger: GCTTGGTGGCTCCTGATTCTGGGAAATCTGCACTCAGCCGCATCTCCTGGCATGATCACAGAAACTGCAGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 72 bp GAGATTGGTTTCTGGGTGACTTTCAGAGTCCAAGTGTaGAAGAGAGGCCAGCTTCCTCTGTCCTTGCCAGCT +
Preference number: 3 (lower is better)
Translates to: EIGFWVTFRVQV*KRGQLPLSLPA
Trigger: AGCTGGCAAGGACAGAGGAAGCTGGCCTCTCTTCCACACTTGGACTCTGAAAGTCACCCAGAAACCAATCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CAA 90 bp GAAACAGTGCCCTTGGCTGCCTTCCTTCTTAACACACAATGCATGACCCATAGATCTGTCCTTGCCAGCTaGGCTCCTCTCCAGACCCTT +
Preference number: 3 (lower is better)
Translates to: ETVPLAAFLLNTQCMTHRSVLAS*APLQTL
Trigger: AAGGGTCTGGAGAGGAGCCAAGCTGGCAAGGACAGA...TCTATGGGTCATGCATTGTGTGTTAAGAAGGAAGGCAGCCAAGGGCACTGTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CAA 90 bp GAAACAGTGCCCTTGGCTGCCTTCCTTCTTAACACACAATGCATGACCCATAGATCAGACTGTCCCACCTaGTCCCAGTGCTGTACCCTG +
Preference number: 3 (lower is better)
Translates to: ETVPLAAFLLNTQCMTHRSDCPT*SQCCTL
Trigger: CAGGGTACAGCACTGGGACAAGGTGGGACAGTCTGA...TCTATGGGTCATGCATTGTGTGTTAAGAAGGAAGGCAGCCAAGGGCACTGTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR GCA 72 bp AAGCACAGTCTGGAGGACTCGAGGAGATGCCAGTCTTaGTATTTGAAAGCCTCAGACAAGGCACTGAAGTGG +
Preference number: 3 (lower is better)
Translates to: KHSLEDSRRCQS*YLKASDKALKW
Trigger: CCACTTCAGTGCCTTGTCTGAGGCTTTCAAATAGCAAGACTGGCATCTCCTCGAGTCCTCCAGACTGTGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 72 bp ACCTCGAGGTCAATGGTAAGGCTGGAGATTGGTTTCTaGGTGACTTTCAGAGTCCAAGTGTGGAAGAGAGGC +
Preference number: 3 (lower is better)
Translates to: TSRSMVRLEIGF*VTFRVQVWKRG
Trigger: GCCTCTCTTCCACACTTGGACTCTGAAAGTCACCCAGAAACCAATCTCCAGCCTTACCATTGACCTCGAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 72 bp GGACAGGACCTCGAGGTCAATGGTAAGGCTGGAGATTaGTTTCTGGGTGACTTTCAGAGTCCAAGTGTGGAA +
Preference number: 3 (lower is better)
Translates to: GQDLEVNGKAGD*FLGDFQSPSVE
Trigger: TTCCACACTTGGACTCTGAAAGTCACCCAGAAACCAATCTCCAGCCTTACCATTGACCTCGAGGTCCTGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CAA 90 bp TTCAAGCAAGGGGCCTGTCGTCTTCTGAGCTGCGTAAATTTGTCTACAGTGGTGACCCGATCAATGTCCTaGGGGGTTCATAAAGCATCC +
Preference number: 3 (lower is better)
Translates to: FKQGACRLLSCVNLSTVVTRSMS*GVHKAS
Trigger: GGATGCTTTATGAACCCCCAAGGACATTGATCGGGT...CACCACTGTAGACAAATTTACGCAGCTCAGAAGACGACAGGCCCCTTGCTTGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR GCA 72 bp CAAACAGTTCACACACACCGGCCAGGCAAGTGGAAATaGATCTTGTCATTGAGTCCTCTTCTGGTAACTCCG +
Preference number: 3 (lower is better)
Translates to: QTVHTHRPGKWK*ILSLSPLLVTP
Trigger: CGGAGTTACCAGAAGAGGACTCAATGACAAGATGCATTTCCACTTGCCTGGCCGGTGTGTGTGAACTGTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 72 bp CCTCTGAGCAAGAAACCGGGTGTGATGGAAACACGCTaGACTTGCTGGTTTAAGAAAAAGGTGAACAGGAGC +
Preference number: 3 (lower is better)
Translates to: PLSKKPGVMETR*TCWFKKKVNRS
Trigger: GCTCCTGTTCACCTTTTTCTTAAACCAGCAAGTCCAGCGTGTTTCCATCACACCCGGTTTCTTGCTCAGAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 72 bp ATGGGACAGACTGGGTCAAAAGAAGGAGGGCTGTATTaGAGGCAGAAAGCAGAAGGAAGACTCTTCTGTCTC +
Preference number: 3 (lower is better)
Translates to: MGQTGSKEGGLY*RQKAEGRLFCL
Trigger: GAGACAGAAGAGTCTTCCTTCTGCTTTCTGCCTCCAATACAGCCCTCCTTCTTTTGACCCAGTCTGTCCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 72 bp GAATGGGGTTGCCTTCCCTTCCTGGATCACAATGTCTaGGGATTAGGATCCATCCATCATCCTAGCCAAGAA +
Preference number: 3 (lower is better)
Translates to: EWGCLPFLDHNV*GLGSIHHPSQE
Trigger: TTCTTGGCTAGGATGATGGATGGATCCTAATCCCCAGACATTGTGATCCAGGAAGGGAAGGCAACCCCATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CAA 90 bp TTCAAGCAAGGGGCCTGTCGTCTTCTGAGCTGCGTAAATTTGTCTACAGTGGTGTGCCAGTCTTGCTATTaGAAAGCCTCAGACAAGGCA +
Preference number: 3 (lower is better)
Translates to: FKQGACRLLSCVNLSTVVCQSCY*KASDKA
Trigger: TGCCTTGTCTGAGGCTTTCAAATAGCAAGACTGGCA...CACCACTGTAGACAAATTTACGCAGCTCAGAAGACGACAGGCCCCTTGCTTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR TCA 72 bp CCCAGAATTTCGGGAACATCTTATCTGCAGTTTCTGTaGTCATGCCAGGAGATGCGGCTGAGTGCAGATTTC +
Preference number: 3 (lower is better)
Translates to: PRISGTSYLQFL*SCQEMRLSADF
Trigger: GAAATCTGCACTCAGCCGCATCTCCTGGCATGATCACAGAAACTGCAGATAAGATGTTCCCGAAATTCTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR GCA 72 bp AGCAAGAAACCGGGTGTGATGGAAACACGCTGGACTTaGTGGTTTAAGAAAAAGGTGAACAGGAGCCTGTCT +
Preference number: 3 (lower is better)
Translates to: SKKPGVMETRWT*WFKKKVNRSLS
Trigger: AGACAGGCTCCTGTTCACCTTTTTCTTAAACCAGCAAGTCCAGCGTGTTTCCATCACACCCGGTTTCTTGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 72 bp TTTCTAAATGCAGCTCCCGAGGCTATCTCAGAGTCATaGGACAGACTGGGTCAAAAGAAGGAGGGCTGTATT +
Preference number: 3 (lower is better)
Translates to: FLNAAPEAISES*DRLGQKKEGCI
Trigger: AATACAGCCCTCCTTCTTTTGACCCAGTCTGTCCCATGACTCTGAGATAGCCTCGGGAGCTGCATTTAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CAA 90 bp AAGAAGGAGGGCTGTATTGGAGGCAGAAAGCAGAAGGAAGACTCTTCTGTCTCTTGCCAGTCTTGCTATTaGAAAGCCTCAGACAAGGCA +
Preference number: 3 (lower is better)
Translates to: KKEGCIGGRKQKEDSSVSCQSCY*KASDKA
Trigger: TGCCTTGTCTGAGGCTTTCAAATAGCAAGACTGGCA...AGAGACAGAAGAGTCTTCCTTCTGCTTTCTGCCTCCAATACAGCCCTCCTTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CAA 90 bp GAATTTCGGGAACATCTTATCTGCAGTTTCTGTGATCATGCCAGGAGATGCGGCTTTATTGTACCCATTTaGCCAAAGCACCCCAGGGAA +
Preference number: 3 (lower is better)
Translates to: EFREHLICSFCDHARRCGFIVPI*PKHPRE
Trigger: TTCCCTGGGGTGCTTTGGCAAAATGGGTACAATAAA...GCCGCATCTCCTGGCATGATCACAGAAACTGCAGATAAGATGTTCCCGAAATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR TCA 72 bp AGGCATCTCACAGAACCTCAGCAAGAGAAATGTCTTTaGGTGACTCTGGACGATCCCGTTAGAGGTAAGATC +
Preference number: 3 (lower is better)
Translates to: RHLTEPQQEKCL*VTLDDPVRGKI
Trigger: GATCTTACCTCTAACGGGATCGTCCAGAGTCACTCAAAGACATTTCTCTTGCTGAGGTTCTGTGAGATGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR GCA 72 bp ACAGTGCCCTTGGCTGCCTTCCTTCTTAACACACAATaGATGACCCATAGAGAGCAGTTTTGCTTTCTATCC +
Preference number: 3 (lower is better)
Translates to: TVPLAAFLLNTQ*MTHREQFCFLS
Trigger: GGATAGAAAGCAAAACTGCTCTCTATGGGTCATGCATTGTGTGTTAAGAAGGAAGGCAGCCAAGGGCACTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 72 bp CAAACACAAACAGTTCACACACACCGGCCAGGCAAGTaGAAATGCATCTTGTCATTGAGTCCTCTTCTGGTA +
Preference number: 3 (lower is better)
Translates to: QTQTVHTHRPGK*KCILSLSPLLV
Trigger: TACCAGAAGAGGACTCAATGACAAGATGCATTTCCACTTGCCTGGCCGGTGTGTGTGAACTGTTTGTGTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CAA 90 bp CGGCTTCTTACAAGAAACATGTCTTATGGTCTAGCTTATTTATTGTACCCATTTCAGCTTCCTCTGTCCTaGCCAGCTTGGCTCCTCTCC +
Preference number: 3 (lower is better)
Translates to: RLLTRNMSYGLAYLLYPFQLPLS*PAWLLS
Trigger: GGAGAGGAGCCAAGCTGGCAAGGACAGAGGAAGCTG...AAATGGGTACAATAAATAAGCTAGACCATAAGACATGTTTCTTGTAAGAAGCCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CAA 90 bp TTCAAGCAAGGGGCCTGTCGTCTTCTGAGCTGCGTAAATTTGTCTACAGTGGTGAGCTACTTATTTGCTTaGTCTCTCTTGTCCAGATCA +
Preference number: 3 (lower is better)
Translates to: FKQGACRLLSCVNLSTVVSYLFA*SLLSRS
Trigger: TGATCTGGACAAGAGAGACAAAGCAAATAAGTAGCT...CACCACTGTAGACAAATTTACGCAGCTCAGAAGACGACAGGCCCCTTGCTTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR GCA 72 bp TATATATCTAAGCACAGTCTGGAGGACTCGAGGAGATaGCAGTCTTGCTATTTGAAAGCCTCAGACAAGGCA +
Preference number: 3 (lower is better)
Translates to: YISKHSLEDSRR*QSCYLKASDKA
Trigger: TGCCTTGTCTGAGGCTTTCAAATAGCAAGACTGGCATCTCCTCGAGTCCTCCAGACTGTGCTTAGATATATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 72 bp AAGAAACCGGGTGTGATGGAAACACGCTGGACTTGCTaGTTTAAGAAAAAGGTGAACAGGAGCCTGTCTTTT +
Preference number: 3 (lower is better)
Translates to: KKPGVMETRWTC*FKKKVNRSLSF
Trigger: AAAAGACAGGCTCCTGTTCACCTTTTTCTTAAACCAGCAAGTCCAGCGTGTTTCCATCACACCCGGTTTCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CAA 90 bp AAGAAGGAGGGCTGTATTGGAGGCAGAAAGCAGAAGGAAGACTCTTCTGTCTCTAGCTACTTATTTGCTTaGTCTCTCTTGTCCAGATCA +
Preference number: 3 (lower is better)
Translates to: KKEGCIGGRKQKEDSSVSSYLFA*SLLSRS
Trigger: TGATCTGGACAAGAGAGACAAAGCAAATAAGTAGCT...AGAGACAGAAGAGTCTTCCTTCTGCTTTCTGCCTCCAATACAGCCCTCCTTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CAA 90 bp AGACTTCCATTATGCCTTCCTAGCTTTCTAGAGAAAATATTCTTACAACACTCATCAGACTGTCCCACCTaGTCCCAGTGCTGTACCCTG +
Preference number: 3 (lower is better)
Translates to: RLPLCLPSFLEKIFLQHSSDCPT*SQCCTL
Trigger: CAGGGTACAGCACTGGGACAAGGTGGGACAGTCTGA...TGAGTGTTGTAAGAATATTTTCTCTAGAAAGCTAGGAAGGCATAATGGAAGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CAA 90 bp GAATTTCGGGAACATCTTATCTGCAGTTTCTGTGATCATGCCAGGAGATGCGGCGGTCTAGCTTATTTATaGTACCCATTTTGCCAAAGC +
Preference number: 3 (lower is better)
Translates to: EFREHLICSFCDHARRCGGLAYL*YPFCQS
Trigger: GCTTTGGCAAAATGGGTACAATAAATAAGCTAGACC...GCCGCATCTCCTGGCATGATCACAGAAACTGCAGATAAGATGTTCCCGAAATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR TCA 72 bp TGCCCTTGGCTGCCTTCCTTCTTAACACACAATGCATaGCCCATAGAGAGCAGTTTTGCTTTCTATCCAATT +
Preference number: 3 (lower is better)
Translates to: CPWLPSFLTHNA*PIESSFAFYPI
Trigger: AATTGGATAGAAAGCAAAACTGCTCTCTATGGGTCATGCATTGTGTGTTAAGAAGGAAGGCAGCCAAGGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR GCA 72 bp ACATTTAAAGTACACCCATCTAGGAGATACATGGCCTaGTTAGATAAAACACAAACTCCTGGCCCCAGCTTC +
Preference number: 3 (lower is better)
Translates to: TFKVHPSRRYMA*LDKTQTPGPSF
Trigger: GAAGCTGGGGCCAGGAGTTTGTGTTTTATCTAAGCAGGCCATGTATCTCCTAGATGGGTGTACTTTAAATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 72 bp GCTACTTATTTGCTTTGTCTCTCTTGTCCAGATCACTaGATAGACTGTAGCGGGAGGAAGTGTAGTGAAAGA +
Preference number: 3 (lower is better)
Translates to: ATYLLCLSCPDH*IDCSGRKCSER
Trigger: TCTTTCACTACACTTCCTCCCGCTACAGTCTATCCAGTGATCTGGACAAGAGAGACAAAGCAAATAAGTAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CCA 72 bp ATAAAACACAAACTCCTGGCCCCAGCTTCAGCCTCATaGCACAAAGATGATTTCCTCACAGATAATCAGCAT +
Preference number: 3 (lower is better)
Translates to: IKHKLLAPASAS*HKDDFLTDNQH
Trigger: ATGCTGATTATCTGTGAGGAAATCATCTTTGTGCCATGAGGCTGAAGCTGGGGCCAGGAGTTTGTGTTTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR GCA 72 bp CTTAACACACAATGCATGACCCATAGAGAGCAGTTTTaGTTTCTATCCAATTTCAACCTAGCTGCTCTGGTC +
Preference number: 3 (lower is better)
Translates to: LNTQCMTHREQF*FLSNFNLAALV
Trigger: GACCAGAGCAGCTAGGTTGAAATTGGATAGAAAGCAAAACTGCTCTCTATGGGTCATGCATTGTGTGTTAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR GCA 72 bp AAACCACACATGCTAGGATTAAAAACATTTGATGTCTaGCTGATGCTAACTTATAAAGCCAGAGGGCACAGG +
Preference number: 3 (lower is better)
Translates to: KPHMLGLKTFDV*LMLTYKARGHR
Trigger: CCTGTGCCCTCTGGCTTTATAAGTTAGCATCAGGCAGACATCAAATGTTTTTAATCCTAGCATGTGTGGTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR GCA 72 bp ATAACTCCCACCATTGACTCAAGTTGCTTTAGTTTCTaGAGAACTACAGACTTCCATTATGCCTTCCTAGCT +
Preference number: 3 (lower is better)
Translates to: ITPTIDSSCFSF*RTTDFHYAFLA
Trigger: AGCTAGGAAGGCATAATGGAAGTCTGTAGTTCTGCAGAAACTAAAGCAACTTGAGTCAATGGTGGGAGTTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR-3UTR CAA 90 bp CGGCTTCTTACAAGAAACATGTCTTATGGTCTAGCTTATTTATTGTACCCATTTACCCGATCAATGTCCTaGGGGGTTCATAAAGCATCC +
Preference number: 3 (lower is better)
Translates to: RLLTRNMSYGLAYLLYPFTRSMS*GVHKAS
Trigger: GGATGCTTTATGAACCCCCAAGGACATTGATCGGGT...AAATGGGTACAATAAATAAGCTAGACCATAAGACATGTTTCTTGTAAGAAGCCG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR GCA 72 bp CTCAGGGATAAAATAACTCCCACCATTGACTCAAGTTaGTTTAGTTTCTGCAGAACTACAGACTTCCATTAT +
Preference number: 3 (lower is better)
Translates to: LRDKITPTIDSS*FSFCRTTDFHY
Trigger: ATAATGGAAGTCTGTAGTTCTGCAGAAACTAAAGCAACTTGAGTCAATGGTGGGAGTTATTTTATCCCTGAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR TCA 72 bp GTCTTGTCTCAGGGAAACATCACTTCAGTAAGGAAATaGAACAGGCATCTTTTATCAAACTTCCAAAACAAA +
Preference number: 3 (lower is better)
Translates to: VLSQGNITSVRK*NRHLLSNFQNK
Trigger: TTTGTTTTGGAAGTTTGATAAAAGATGCCTGTTTCATTTCCTTACTGAAGTGATGTTTCCCTGAGACAAGAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CCA 90 bp CCACGCCTAGTGGCAGTTCAACTTTCCTCTGGCCTTCCGTTCTCTCGCCTCCATTCGAAGGCCAGGTTCTaGACCTTCACGGTGCCCGCG +
Preference number: 4 (lower is better)
Translates to: PRLVAVQLSSGLPFSRLHSKARF*TFTVPA
Trigger: CGCGGGCACCGTGAAGGTCCAGAACCTGGCCTTCGA...ATGGAGGCGAGAGAACGGAAGGCCAGAGGAAAGTTGAACTGCCACTAGGCGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CCA 90 bp AGGGGCCTCTGGGAACTGCAGCAAAACCGTGGAAACACTCACAGCTTTGCTGATGTCAGGGCCAGCCCCTaGTTGTCGGCGAAGGACACC +
Preference number: 4 (lower is better)
Translates to: RGLWELQQNRGNTHSFADVRASP*LSAKDT
Trigger: GGTGTCCTTCGCCGACAACCAGGGGCTGGCCCTGAC...ATCAGCAAAGCTGTGAGTGTTTCCACGGTTTTGCTGCAGTTCCCAGAGGCCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR GCA 90 bp GGAGACGCATGGAAAGCCATGAGCGGGGACAGGACCTCGAGGTCAATGGTAAGGTGGCTTCATCCTTGCTaGCCAGCTGGATACAAGGCC +
Preference number: 4 (lower is better)
Translates to: GDAWKAMSGDRTSRSMVRWLHPC*PAGYKA
Trigger: GGCCTTGTATCCAGCTGGGCAGCAAGGATGAAGCCA...CCTTACCATTGACCTCGAGGTCCTGTCCCCGCTCATGGCTTTCCATGCGTCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR GCA 90 bp TCTGGCACCATCCTGCGCATTCCCTTGTGGCCAACCCGGATGCCACAGAGGATCCACTGGCTTCATCCTTaGTGCCCAGCTGGATACAAG +
Preference number: 4 (lower is better)
Translates to: SGTILRIPLWPTRMPQRIHWLHP*CPAGYK
Trigger: CTTGTATCCAGCTGGGCAGCAAGGATGAAGCCAGTG...GATCCTCTGTGGCATCCGGGTTGGCCACAAGGGAATGCGCAGGATGGTGCCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR GCA 90 bp CCACGCCTAGTGGCAGTTCAACTTTCCTCTGGCCTTCCGTTCTCTCGCCTCCATAAGGCCTCAGGGGCTTaGTCAGTTTGGGGGAGATCT +
Preference number: 4 (lower is better)
Translates to: PRLVAVQLSSGLPFSRLHKASGA*SVWGRS
Trigger: AGATCTCCCCCAAACTGAGCAAGCCCCTGAGGCCTT...ATGGAGGCGAGAGAACGGAAGGCCAGAGGAAAGTTGAACTGCCACTAGGCGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR GCA 90 bp CCACGCCTAGTGGCAGTTCAACTTTCCTCTGGCCTTCCGTTCTCTCGCCTCCATTTCACCTTCTTCTCCTaGACTGCGGGGGCCACCATT +
Preference number: 4 (lower is better)
Translates to: PRLVAVQLSSGLPFSRLHFTFFS*TAGATI
Trigger: AATGGTGGCCCCCGCAGTGCAGGAGAAGAAGGTGAA...ATGGAGGCGAGAGAACGGAAGGCCAGAGGAAAGTTGAACTGCCACTAGGCGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CCA 90 bp AGGGGCCTCTGGGAACTGCAGCAAAACCGTGGAAACACTCACAGCTTTGCTGATTCCTTGCTGCCCAGCTaGATACAAGGCCTCAGGGGC +
Preference number: 4 (lower is better)
Translates to: RGLWELQQNRGNTHSFADSLLPS*IQGLRG
Trigger: GCCCCTGAGGCCTTGTATCCAGCTGGGCAGCAAGGA...ATCAGCAAAGCTGTGAGTGTTTCCACGGTTTTGCTGCAGTTCCCAGAGGCCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CCA 90 bp TTGCCTTCCCTTCCTGGATCACAATGTCTGGGGATTAGGATCCATCCATCATCCGTCAGGGCCAGCCCCTaGTTGTCGGCGAAGGACACC +
Preference number: 4 (lower is better)
Translates to: LPSLPGSQCLGIRIHPSSVRASP*LSAKDT
Trigger: GGTGTCCTTCGCCGACAACCAGGGGCTGGCCCTGAC...GGATGATGGATGGATCCTAATCCCCAGACATTGTGATCCAGGAAGGGAAGGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR TCA 90 bp GGAGACGCATGGAAAGCCATGAGCGGGGACAGGACCTCGAGGTCAATGGTAAGGGAATGTGTCCCTGTCTaGACCAGCGTAAGTGTCCTT +
Preference number: 4 (lower is better)
Translates to: GDAWKAMSGDRTSRSMVRECVPV*TSVSVL
Trigger: AAGGACACTTACGCTGGTTCAGACAGGGACACATTC...CCTTACCATTGACCTCGAGGTCCTGTCCCCGCTCATGGCTTTCCATGCGTCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR GCA 90 bp CCACGCCTAGTGGCAGTTCAACTTTCCTCTGGCCTTCCGTTCTCTCGCCTCCATCACTGGCTTCATCCTTaGTGCCCAGCTGGATACAAG +
Preference number: 4 (lower is better)
Translates to: PRLVAVQLSSGLPFSRLHHWLHP*CPAGYK
Trigger: CTTGTATCCAGCTGGGCAGCAAGGATGAAGCCAGTG...ATGGAGGCGAGAGAACGGAAGGCCAGAGGAAAGTTGAACTGCCACTAGGCGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CCA 90 bp AGGGGCCTCTGGGAACTGCAGCAAAACCGTGGAAACACTCACAGCTTTGCTGATGGGCCACCATTCCACTaGCTTCATCCTTGCTGCCCA +
Preference number: 4 (lower is better)
Translates to: RGLWELQQNRGNTHSFADGPPFH*LHPCCP
Trigger: TGGGCAGCAAGGATGAAGCCAGTGGAATGGTGGCCC...ATCAGCAAAGCTGTGAGTGTTTCCACGGTTTTGCTGCAGTTCCCAGAGGCCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CCA 90 bp TTCAAGCAAGGGGCCTGTCGTCTTCTGAGCTGCGTAAATTTGTCTACAGTGGTGTCGAAGGCCAGGTTCTaGACCTTCACGGTGCCCGCG +
Preference number: 4 (lower is better)
Translates to: FKQGACRLLSCVNLSTVVSKARF*TFTVPA
Trigger: CGCGGGCACCGTGAAGGTCCAGAACCTGGCCTTCGA...CACCACTGTAGACAAATTTACGCAGCTCAGAAGACGACAGGCCCCTTGCTTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CCA 90 bp TTCAAGCAAGGGGCCTGTCGTCTTCTGAGCTGCGTAAATTTGTCTACAGTGGTGTCCTTGCTGCCCAGCTaGATACAAGGCCTCAGGGGC +
Preference number: 4 (lower is better)
Translates to: FKQGACRLLSCVNLSTVVSLLPS*IQGLRG
Trigger: GCCCCTGAGGCCTTGTATCCAGCTGGGCAGCAAGGA...CACCACTGTAGACAAATTTACGCAGCTCAGAAGACGACAGGCCCCTTGCTTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR TCA 90 bp TCTGGCACCATCCTGCGCATTCCCTTGTGGCCAACCCGGATGCCACAGAGGATCTGTCAAATGTCATCCTaGTCTTCACAACCTTCTCGA +
Preference number: 4 (lower is better)
Translates to: SGTILRIPLWPTRMPQRICQMSS*SSQPSR
Trigger: TCGAGAAGGTTGTGAAGATCAGGATGACATTTGACA...GATCCTCTGTGGCATCCGGGTTGGCCACAAGGGAATGCGCAGGATGGTGCCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CAA 72 bp GGGAACTGCAGCAAAACCGTGGAAACACTCACAGCTTaGCTGATGGAGCTGGAGGCATCTCACAGAACCTCA +
Preference number: 4 (lower is better)
Translates to: GNCSKTVETLTA*LMELEASHRTS
Trigger: TGAGGTTCTGTGAGATGCCTCCAGCTCCATCAGCAAAGCTGTGAGTGTTTCCACGGTTTTGCTGCAGTTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR TCA 90 bp CCACGCCTAGTGGCAGTTCAACTTTCCTCTGGCCTTCCGTTCTCTCGCCTCCATGACAAGGGAAATCTGTaGAGCTTTTCCAGGTGTCAA +
Preference number: 4 (lower is better)
Translates to: PRLVAVQLSSGLPFSRLHDKGNL*SFSRCQ
Trigger: TTGACACCTGGAAAAGCTTCACAGATTTCCCTTGTC...ATGGAGGCGAGAGAACGGAAGGCCAGAGGAAAGTTGAACTGCCACTAGGCGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR TCA 90 bp CCACGCCTAGTGGCAGTTCAACTTTCCTCTGGCCTTCCGTTCTCTCGCCTCCATGTGTCCTTCACATACTaGCAAGGGAAATCTGTGAAG +
Preference number: 4 (lower is better)
Translates to: PRLVAVQLSSGLPFSRLHVSFTY*QGKSVK
Trigger: CTTCACAGATTTCCCTTGTCAGTATGTGAAGGACAC...ATGGAGGCGAGAGAACGGAAGGCCAGAGGAAAGTTGAACTGCCACTAGGCGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CCA 90 bp CCACGCCTAGTGGCAGTTCAACTTTCCTCTGGCCTTCCGTTCTCTCGCCTCCATATAACTAGGCCACTCTaGAAACAGGCCAAAGGAACA +
Preference number: 4 (lower is better)
Translates to: PRLVAVQLSSGLPFSRLHITRPL*KQAKGT
Trigger: TGTTCCTTTGGCCTGTTTCCAGAGTGGCCTAGTTAT...ATGGAGGCGAGAGAACGGAAGGCCAGAGGAAAGTTGAACTGCCACTAGGCGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR TCA 90 bp CCACGCCTAGTGGCAGTTCAACTTTCCTCTGGCCTTCCGTTCTCTCGCCTCCATTGTCAAATGTCATCCTaGTCTTCACAACCTTCTCGA +
Preference number: 4 (lower is better)
Translates to: PRLVAVQLSSGLPFSRLHCQMSS*SSQPSR
Trigger: TCGAGAAGGTTGTGAAGATCAGGATGACATTTGACA...ATGGAGGCGAGAGAACGGAAGGCCAGAGGAAAGTTGAACTGCCACTAGGCGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR GCA 90 bp AAGAAGGAGGGCTGTATTGGAGGCAGAAAGCAGAAGGAAGACTCTTCTGTCTCTAAGGCCTCAGGGGCTTaGTCAGTTTGGGGGAGATCT +
Preference number: 4 (lower is better)
Translates to: KKEGCIGGRKQKEDSSVSKASGA*SVWGRS
Trigger: AGATCTCCCCCAAACTGAGCAAGCCCCTGAGGCCTT...AGAGACAGAAGAGTCTTCCTTCTGCTTTCTGCCTCCAATACAGCCCTCCTTCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR GCA 90 bp AAGAAGGAGGGCTGTATTGGAGGCAGAAAGCAGAAGGAAGACTCTTCTGTCTCTTGGCTTCATCCTTGCTaGCCAGCTGGATACAAGGCC +
Preference number: 4 (lower is better)
Translates to: KKEGCIGGRKQKEDSSVSWLHPC*PAGYKA
Trigger: GGCCTTGTATCCAGCTGGGCAGCAAGGATGAAGCCA...AGAGACAGAAGAGTCTTCCTTCTGCTTTCTGCCTCCAATACAGCCCTCCTTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR GCA 90 bp GAATTTCGGGAACATCTTATCTGCAGTTTCTGTGATCATGCCAGGAGATGCGGCTTCACCTTCTTCTCCTaGACTGCGGGGGCCACCATT +
Preference number: 4 (lower is better)
Translates to: EFREHLICSFCDHARRCGFTFFS*TAGATI
Trigger: AATGGTGGCCCCCGCAGTGCAGGAGAAGAAGGTGAA...GCCGCATCTCCTGGCATGATCACAGAAACTGCAGATAAGATGTTCCCGAAATTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR GCA 90 bp GAATTTCGGGAACATCTTATCTGCAGTTTCTGTGATCATGCCAGGAGATGCGGCCACTGGCTTCATCCTTaGTGCCCAGCTGGATACAAG +
Preference number: 4 (lower is better)
Translates to: EFREHLICSFCDHARRCGHWLHP*CPAGYK
Trigger: CTTGTATCCAGCTGGGCAGCAAGGATGAAGCCAGTG...GCCGCATCTCCTGGCATGATCACAGAAACTGCAGATAAGATGTTCCCGAAATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR GCA 90 bp TTCAAGCAAGGGGCCTGTCGTCTTCTGAGCTGCGTAAATTTGTCTACAGTGGTGAAAGCTCTCGCTCTCTaGTGTCGTCAGACTCACGAT +
Preference number: 4 (lower is better)
Translates to: FKQGACRLLSCVNLSTVVKALAL*CRQTHD
Trigger: ATCGTGAGTCTGACGACAGCAGAGAGCGAGAGCTTT...CACCACTGTAGACAAATTTACGCAGCTCAGAAGACGACAGGCCCCTTGCTTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR GCA 90 bp TTCAAGCAAGGGGCCTGTCGTCTTCTGAGCTGCGTAAATTTGTCTACAGTGGTGAGTTTTTGCCTTTGTTaGTGTCCCAGTACGCCTGGC +
Preference number: 4 (lower is better)
Translates to: FKQGACRLLSCVNLSTVVSFCLC*CPSTPG
Trigger: GCCAGGCGTACTGGGACAGCAACAAAGGCAAAAACT...CACCACTGTAGACAAATTTACGCAGCTCAGAAGACGACAGGCCCCTTGCTTGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CCA 90 bp ATAATTCTAATTTGCCCTAGAGAAAAATCACAGGGTTTGGGGGTTCACCCAAGGTCCTTGCTGCCCAGCTaGATACAAGGCCTCAGGGGC +
Preference number: 4 (lower is better)
Translates to: IILICPREKSQGLGVHPRSLLPS*IQGLRG
Trigger: GCCCCTGAGGCCTTGTATCCAGCTGGGCAGCAAGGA...CCTTGGGTGAACCCCCAAACCCTGTGATTTTTCTCTAGGGCAAATTAGAATTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR GCA 90 bp AAGAAGGAGGGCTGTATTGGAGGCAGAAAGCAGAAGGAAGACTCTTCTGTCTCTAAAGCTCTCGCTCTCTaGTGTCGTCAGACTCACGAT +
Preference number: 4 (lower is better)
Translates to: KKEGCIGGRKQKEDSSVSKALAL*CRQTHD
Trigger: ATCGTGAGTCTGACGACAGCAGAGAGCGAGAGCTTT...AGAGACAGAAGAGTCTTCCTTCTGCTTTCTGCCTCCAATACAGCCCTCCTTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CCA 90 bp ATAATTCTAATTTGCCCTAGAGAAAAATCACAGGGTTTGGGGGTTCACCCAAGGGGGCCACCATTCCACTaGCTTCATCCTTGCTGCCCA +
Preference number: 4 (lower is better)
Translates to: IILICPREKSQGLGVHPRGPPFH*LHPCCP
Trigger: TGGGCAGCAAGGATGAAGCCAGTGGAATGGTGGCCC...CCTTGGGTGAACCCCCAAACCCTGTGATTTTTCTCTAGGGCAAATTAGAATTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CCA 90 bp TTGCCTTCCCTTCCTGGATCACAATGTCTGGGGATTAGGATCCATCCATCATCCATAACTAGGCCACTCTaGAAACAGGCCAAAGGAACA +
Preference number: 4 (lower is better)
Translates to: LPSLPGSQCLGIRIHPSSITRPL*KQAKGT
Trigger: TGTTCCTTTGGCCTGTTTCCAGAGTGGCCTAGTTAT...GGATGATGGATGGATCCTAATCCCCAGACATTGTGATCCAGGAAGGGAAGGCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR TCA 90 bp GAAACAGTGCCCTTGGCTGCCTTCCTTCTTAACACACAATGCATGACCCATAGATCTGAAGGCGATTTCTaGAGTCTAAGTAATCTGCGG +
Preference number: 4 (lower is better)
Translates to: ETVPLAAFLLNTQCMTHRSEGDF*SLSNLR
Trigger: CCGCAGATTACTTAGACTTCAGAAATCGCCTTCAGA...TCTATGGGTCATGCATTGTGTGTTAAGAAGGAAGGCAGCCAAGGGCACTGTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR TCA 90 bp GAATTTCGGGAACATCTTATCTGCAGTTTCTGTGATCATGCCAGGAGATGCGGCTCTGAAGGCGATTTCTaGAGTCTAAGTAATCTGCGG +
Preference number: 4 (lower is better)
Translates to: EFREHLICSFCDHARRCGSEGDF*SLSNLR
Trigger: CCGCAGATTACTTAGACTTCAGAAATCGCCTTCAGA...GCCGCATCTCCTGGCATGATCACAGAAACTGCAGATAAGATGTTCCCGAAATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR TCA 90 bp TTGCCTTCCCTTCCTGGATCACAATGTCTGGGGATTAGGATCCATCCATCATCCTGTCAAATGTCATCCTaGTCTTCACAACCTTCTCGA +
Preference number: 4 (lower is better)
Translates to: LPSLPGSQCLGIRIHPSSCQMSS*SSQPSR
Trigger: TCGAGAAGGTTGTGAAGATCAGGATGACATTTGACA...GGATGATGGATGGATCCTAATCCCCAGACATTGTGATCCAGGAAGGGAAGGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR TCA 90 bp AAGAAGGAGGGCTGTATTGGAGGCAGAAAGCAGAAGGAAGACTCTTCTGTCTCTGACAAGGGAAATCTGTaGAGCTTTTCCAGGTGTCAA +
Preference number: 4 (lower is better)
Translates to: KKEGCIGGRKQKEDSSVSDKGNL*SFSRCQ
Trigger: TTGACACCTGGAAAAGCTTCACAGATTTCCCTTGTC...AGAGACAGAAGAGTCTTCCTTCTGCTTTCTGCCTCCAATACAGCCCTCCTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR TCA 90 bp GAATTTCGGGAACATCTTATCTGCAGTTTCTGTGATCATGCCAGGAGATGCGGCGACAAGGGAAATCTGTaGAGCTTTTCCAGGTGTCAA +
Preference number: 4 (lower is better)
Translates to: EFREHLICSFCDHARRCGDKGNL*SFSRCQ
Trigger: TTGACACCTGGAAAAGCTTCACAGATTTCCCTTGTC...GCCGCATCTCCTGGCATGATCACAGAAACTGCAGATAAGATGTTCCCGAAATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CCA 90 bp CGGCTTCTTACAAGAAACATGTCTTATGGTCTAGCTTATTTATTGTACCCATTTTCGAAGGCCAGGTTCTaGACCTTCACGGTGCCCGCG +
Preference number: 4 (lower is better)
Translates to: RLLTRNMSYGLAYLLYPFSKARF*TFTVPA
Trigger: CGCGGGCACCGTGAAGGTCCAGAACCTGGCCTTCGA...AAATGGGTACAATAAATAAGCTAGACCATAAGACATGTTTCTTGTAAGAAGCCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CCA 90 bp GAAACAGTGCCCTTGGCTGCCTTCCTTCTTAACACACAATGCATGACCCATAGAATAACTAGGCCACTCTaGAAACAGGCCAAAGGAACA +
Preference number: 4 (lower is better)
Translates to: ETVPLAAFLLNTQCMTHRITRPL*KQAKGT
Trigger: TGTTCCTTTGGCCTGTTTCCAGAGTGGCCTAGTTAT...TCTATGGGTCATGCATTGTGTGTTAAGAAGGAAGGCAGCCAAGGGCACTGTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR TCA 90 bp ATAATTCTAATTTGCCCTAGAGAAAAATCACAGGGTTTGGGGGTTCACCCAAGGGAATGTGTCCCTGTCTaGACCAGCGTAAGTGTCCTT +
Preference number: 4 (lower is better)
Translates to: IILICPREKSQGLGVHPRECVPV*TSVSVL
Trigger: AAGGACACTTACGCTGGTTCAGACAGGGACACATTC...CCTTGGGTGAACCCCCAAACCCTGTGATTTTTCTCTAGGGCAAATTAGAATTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR GCA 90 bp ATAATTCTAATTTGCCCTAGAGAAAAATCACAGGGTTTGGGGGTTCACCCAAGGAAAGCTCTCGCTCTCTaGTGTCGTCAGACTCACGAT +
Preference number: 4 (lower is better)
Translates to: IILICPREKSQGLGVHPRKALAL*CRQTHD
Trigger: ATCGTGAGTCTGACGACAGCAGAGAGCGAGAGCTTT...CCTTGGGTGAACCCCCAAACCCTGTGATTTTTCTCTAGGGCAAATTAGAATTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR GCA 90 bp ATAATTCTAATTTGCCCTAGAGAAAAATCACAGGGTTTGGGGGTTCACCCAAGGAGTTTTTGCCTTTGTTaGTGTCCCAGTACGCCTGGC +
Preference number: 4 (lower is better)
Translates to: IILICPREKSQGLGVHPRSFCLC*CPSTPG
Trigger: GCCAGGCGTACTGGGACAGCAACAAAGGCAAAAACT...CCTTGGGTGAACCCCCAAACCCTGTGATTTTTCTCTAGGGCAAATTAGAATTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR GCA 90 bp AGACTTCCATTATGCCTTCCTAGCTTTCTAGAGAAAATATTCTTACAACACTCAAAGGCCTCAGGGGCTTaGTCAGTTTGGGGGAGATCT +
Preference number: 4 (lower is better)
Translates to: RLPLCLPSFLEKIFLQHSKASGA*SVWGRS
Trigger: AGATCTCCCCCAAACTGAGCAAGCCCCTGAGGCCTT...TGAGTGTTGTAAGAATATTTTCTCTAGAAAGCTAGGAAGGCATAATGGAAGTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR TCA 90 bp CGGCTTCTTACAAGAAACATGTCTTATGGTCTAGCTTATTTATTGTACCCATTTGAATGTGTCCCTGTCTaGACCAGCGTAAGTGTCCTT +
Preference number: 4 (lower is better)
Translates to: RLLTRNMSYGLAYLLYPFECVPV*TSVSVL
Trigger: AAGGACACTTACGCTGGTTCAGACAGGGACACATTC...AAATGGGTACAATAAATAAGCTAGACCATAAGACATGTTTCTTGTAAGAAGCCG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR TCA 90 bp AGACTTCCATTATGCCTTCCTAGCTTTCTAGAGAAAATATTCTTACAACACTCAGTGTCCTTCACATACTaGCAAGGGAAATCTGTGAAG +
Preference number: 4 (lower is better)
Translates to: RLPLCLPSFLEKIFLQHSVSFTY*QGKSVK
Trigger: CTTCACAGATTTCCCTTGTCAGTATGTGAAGGACAC...TGAGTGTTGTAAGAATATTTTCTCTAGAAAGCTAGGAAGGCATAATGGAAGTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CAA 72 bp CATGTCTTATGGTCTAGCTTATTTATTGTACCCATTTaGCCAAAGCACCCCAGGGAATTTGGGGAAATAAAT +
Preference number: 4 (lower is better)
Translates to: HVLWSSLFIVPI*PKHPREFGEIN
Trigger: ATTTATTTCCCCAAATTCCCTGGGGTGCTTTGGCAAAATGGGTACAATAAATAAGCTAGACCATAAGACATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
3UTR CAA 72 bp CTTACAAGAAACATGTCTTATGGTCTAGCTTATTTATaGTACCCATTTTGCCAAAGCACCCCAGGGAATTTG +
Preference number: 4 (lower is better)
Translates to: LTRNMSYGLAYL*YPFCQSTPGNL
Trigger: CAAATTCCCTGGGGTGCTTTGGCAAAATGGGTACAATAAATAAGCTAGACCATAAGACATGTTTCTTGTAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS GCA 90 bp TCTCCTGCACTGCGGGGGCCACCATTCCACTGGCTTCATCCTTGCTaGCCAGCTGGATACAAGGCCTCAGGGGCTTGCTCAGTTTGGGGG +
Preference number: 5 (lower is better)
Translates to: SPALRGPPFHWLHPC*PAGYKASGACSVWG
Trigger: CCCCCAAACTGAGCAAGCCCCTGAGGCCTTGTATCCAGCTGGGCAGCAAGGATGAAGCCAGTGGAATGGTGGCCCCCGCAGTGCAGGAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS GCA 90 bp CCCTGGTTGTCGGCGAAGGACACCCGCTTCTTCACCTTCTTCTCCTaGACTGCGGGGGCCACCATTCCACTGGCTTCATCCTTGCTGCCC +
Preference number: 5 (lower is better)
Translates to: PWLSAKDTRFFTFFS*TAGATIPLASSLLP
Trigger: GGGCAGCAAGGATGAAGCCAGTGGAATGGTGGCCCCCGCAGTGCAGGAGAAGAAGGTGAAGAAGCGGGTGTCCTTCGCCGACAACCAGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS GCA 90 bp TCTTCTCCTGCACTGCGGGGGCCACCATTCCACTGGCTTCATCCTTaGTGCCCAGCTGGATACAAGGCCTCAGGGGCTTGCTCAGTTTGG +
Preference number: 5 (lower is better)
Translates to: SSPALRGPPFHWLHP*CPAGYKASGACSVW
Trigger: CCAAACTGAGCAAGCCCCTGAGGCCTTGTATCCAGCTGGGCAGCAAGGATGAAGCCAGTGGAATGGTGGCCCCCGCAGTGCAGGAGAAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS CCA 90 bp GCTTCTTCACCTTCTTCTCCTGCACTGCGGGGGCCACCATTCCACTaGCTTCATCCTTGCTGCCCAGCTGGATACAAGGCCTCAGGGGCT +
Preference number: 5 (lower is better)
Translates to: ASSPSSPALRGPPFH*LHPCCPAGYKASGA
Trigger: AGCCCCTGAGGCCTTGTATCCAGCTGGGCAGCAAGGATGAAGCCAGTGGAATGGTGGCCCCCGCAGTGCAGGAGAAGAAGGTGAAGAAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CAA 90 bp TCTGGCACCATCCTGCGCATTCCCTTGTGGCCAACCCGGATGCCACAGAGGATCCCACTGGCTTCATCCTaGCTGCCCAGCTGGATACAA +
Preference number: 5 (lower is better)
Translates to: SGTILRIPLWPTRMPQRIPLASS*LPSWIQ
Trigger: TTGTATCCAGCTGGGCAGCAAGGATGAAGCCAGTGG...GATCCTCTGTGGCATCCGGGTTGGCCACAAGGGAATGCGCAGGATGGTGCCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS CCA 90 bp CAACCTTCTCGAAGGCCAGGTTCTGGACCTTCACGGTGCCCGCGATaGCCTTATCCTTCAGCACACAGTTTTCTAGGCAGACGTGGTTGG +
Preference number: 5 (lower is better)
Translates to: QPSRRPGSGPSRCPR*PYPSAHSFLGRRGW
Trigger: CCAACCACGTCTGCCTAGAAAACTGTGTGCTGAAGGATAAGGCCATCGCGGGCACCGTGAAGGTCCAGAACCTGGCCTTCGAGAAGGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS TCA 90 bp TGTACGGCTCAATCTTTCCCGGAGAGGATCGGAGTTCAGCCCGGGTaGTCCTGTAGTTTTTGCCTTTGTTGCTGTCCCAGTACGCCTGGC +
Preference number: 5 (lower is better)
Translates to: CTAQSFPERIGVQPG*SCSFCLCCCPSTPG
Trigger: GCCAGGCGTACTGGGACAGCAACAAAGGCAAAAACTACAGGATCACCCGGGCTGAACTCCGATCCTCTCCGGGAAAGATTGAGCCGTACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CAA 90 bp AGGGGCCTCTGGGAACTGCAGCAAAACCGTGGAAACACTCACAGCTTTGCTGATAGTTTGGGGGAGATCTaGAAGGTGAAGCGCTCTCTG +
Preference number: 5 (lower is better)
Translates to: RGLWELQQNRGNTHSFADSLGEI*KVKRSL
Trigger: CAGAGAGCGCTTCACCTTCAAGATCTCCCCCAAACT...ATCAGCAAAGCTGTGAGTGTTTCCACGGTTTTGCTGCAGTTCCCAGAGGCCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CAA 90 bp AAGAAGGAGGGCTGTATTGGAGGCAGAAAGCAGAAGGAAGACTCTTCTGTCTCTCAAGGCCTCAGGGGCTaGCTCAGTTTGGGGGAGATC +
Preference number: 5 (lower is better)
Translates to: KKEGCIGGRKQKEDSSVSQGLRG*LSLGEI
Trigger: GATCTCCCCCAAACTGAGCAAGCCCCTGAGGCCTTG...AGAGACAGAAGAGTCTTCCTTCTGCTTTCTGCCTCCAATACAGCCCTCCTTCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CAA 90 bp GAAACAGTGCCCTTGGCTGCCTTCCTTCTTAACACACAATGCATGACCCATAGACAAGGCCTCAGGGGCTaGCTCAGTTTGGGGGAGATC +
Preference number: 5 (lower is better)
Translates to: ETVPLAAFLLNTQCMTHRQGLRG*LSLGEI
Trigger: GATCTCCCCCAAACTGAGCAAGCCCCTGAGGCCTTG...TCTATGGGTCATGCATTGTGTGTTAAGAAGGAAGGCAGCCAAGGGCACTGTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS CCA 90 bp GTAGTAGGGCCCCAGCTTTTCATATCCCAGATAACTAGGCCACTCTaGAAACAGGCCAAAGGAACACCGAGGGCTCCCAAACTGGTCAAA +
Preference number: 5 (lower is better)
Translates to: VVGPQLFISQITRPL*KQAKGTPRAPKLVK
Trigger: TTTGACCAGTTTGGGAGCCCTCGGTGTTCCTTTGGCCTGTTTCCAGAGTGGCCTAGTTATCTGGGATATGAAAAGCTGGGGCCCTACTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS CCA 90 bp GGAACACCGAGGGCTCCCAAACTGGTCAAAAGAGATTCCAAAATCTaGTCCATTGTACGGCTCAATCTTTCCCGGAGAGGATCGGAGTTC +
Preference number: 5 (lower is better)
Translates to: GTPRAPKLVKRDSKI*SIVRLNLSRRGSEF
Trigger: GAACTCCGATCCTCTCCGGGAAAGATTGAGCCGTACAATGGACCAGATTTTGGAATCTCTTTTGACCAGTTTGGGAGCCCTCGGTGTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS CCA 90 bp GGCCACTCTGGAAACAGGCCAAAGGAACACCGAGGGCTCCCAAACTaGTCAAAAGAGATTCCAAAATCTGGTCCATTGTACGGCTCAATC +
Preference number: 5 (lower is better)
Translates to: GHSGNRPKEHRGLPN*SKEIPKSGPLYGSI
Trigger: GATTGAGCCGTACAATGGACCAGATTTTGGAATCTCTTTTGACCAGTTTGGGAGCCCTCGGTGTTCCTTTGGCCTGTTTCCAGAGTGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CAA 90 bp GAAACAGTGCCCTTGGCTGCCTTCCTTCTTAACACACAATGCATGACCCATAGACCACTGGCTTCATCCTaGCTGCCCAGCTGGATACAA +
Preference number: 5 (lower is better)
Translates to: ETVPLAAFLLNTQCMTHRPLASS*LPSWIQ
Trigger: TTGTATCCAGCTGGGCAGCAAGGATGAAGCCAGTGG...TCTATGGGTCATGCATTGTGTGTTAAGAAGGAAGGCAGCCAAGGGCACTGTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CAA 90 bp AAGAAGGAGGGCTGTATTGGAGGCAGAAAGCAGAAGGAAGACTCTTCTGTCTCTAGTTTGGGGGAGATCTaGAAGGTGAAGCGCTCTCTG +
Preference number: 5 (lower is better)
Translates to: KKEGCIGGRKQKEDSSVSSLGEI*KVKRSL
Trigger: CAGAGAGCGCTTCACCTTCAAGATCTCCCCCAAACT...AGAGACAGAAGAGTCTTCCTTCTGCTTTCTGCCTCCAATACAGCCCTCCTTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CAA 90 bp GAATTTCGGGAACATCTTATCTGCAGTTTCTGTGATCATGCCAGGAGATGCGGCGTCAGACTCACGATGTaGTCTAGGAGCTCGGTGATG +
Preference number: 5 (lower is better)
Translates to: EFREHLICSFCDHARRCGVRLTM*SRSSVM
Trigger: CATCACCGAGCTCCTAGACAACATCGTGAGTCTGAC...GCCGCATCTCCTGGCATGATCACAGAAACTGCAGATAAGATGTTCCCGAAATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CAA 90 bp GAAACAGTGCCCTTGGCTGCCTTCCTTCTTAACACACAATGCATGACCCATAGAGTCAGACTCACGATGTaGTCTAGGAGCTCGGTGATG +
Preference number: 5 (lower is better)
Translates to: ETVPLAAFLLNTQCMTHRVRLTM*SRSSVM
Trigger: CATCACCGAGCTCCTAGACAACATCGTGAGTCTGAC...TCTATGGGTCATGCATTGTGTGTTAAGAAGGAAGGCAGCCAAGGGCACTGTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS TCA 90 bp CGGCAAACTCCATTCTTTCGTAAGACTGAATTTTCTCGGGTAAGCTaGTGTCAAAGGAGAATGTGTCCCTGTCTGAACCAGCGTAAGTGT +
Preference number: 5 (lower is better)
Translates to: RQTPFFRKTEFSRVS*CQRRMCPCLNQRKC
Trigger: ACACTTACGCTGGTTCAGACAGGGACACATTCTCCTTTGACATCAGCTTACCCGAGAAAATTCAGTCTTACGAAAGAATGGAGTTTGCCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CAA 90 bp CGGCTTCTTACAAGAAACATGTCTTATGGTCTAGCTTATTTATTGTACCCATTTCCACTGGCTTCATCCTaGCTGCCCAGCTGGATACAA +
Preference number: 5 (lower is better)
Translates to: RLLTRNMSYGLAYLLYPFPLASS*LPSWIQ
Trigger: TTGTATCCAGCTGGGCAGCAAGGATGAAGCCAGTGG...AAATGGGTACAATAAATAAGCTAGACCATAAGACATGTTTCTTGTAAGAAGCCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CAA 90 bp AGACTTCCATTATGCCTTCCTAGCTTTCTAGAGAAAATATTCTTACAACACTCAAGTTTGGGGGAGATCTaGAAGGTGAAGCGCTCTCTG +
Preference number: 5 (lower is better)
Translates to: RLPLCLPSFLEKIFLQHSSLGEI*KVKRSL
Trigger: CAGAGAGCGCTTCACCTTCAAGATCTCCCCCAAACT...TGAGTGTTGTAAGAATATTTTCTCTAGAAAGCTAGGAAGGCATAATGGAAGTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS-3UTR CAA 90 bp CGGCTTCTTACAAGAAACATGTCTTATGGTCTAGCTTATTTATTGTACCCATTTGTCAGACTCACGATGTaGTCTAGGAGCTCGGTGATG +
Preference number: 5 (lower is better)
Translates to: RLLTRNMSYGLAYLLYPFVRLTM*SRSSVM
Trigger: CATCACCGAGCTCCTAGACAACATCGTGAGTCTGAC...AAATGGGTACAATAAATAAGCTAGACCATAAGACATGTTTCTTGTAAGAAGCCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS GCA 72 bp GCACTGCGGGGGCCACCATTCCACTGGCTTCATCCTTaGTGCCCAGCTGGATACAAGGCCTCAGGGGCTTGC +
Preference number: 6 (lower is better)
Translates to: ALRGPPFHWLHP*CPAGYKASGAC
Trigger: GCAAGCCCCTGAGGCCTTGTATCCAGCTGGGCAGCAAGGATGAAGCCAGTGGAATGGTGGCCCCCGCAGTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS GCA 72 bp CTGCGGGGGCCACCATTCCACTGGCTTCATCCTTGCTaGCCAGCTGGATACAAGGCCTCAGGGGCTTGCTCA +
Preference number: 6 (lower is better)
Translates to: LRGPPFHWLHPC*PAGYKASGACS
Trigger: TGAGCAAGCCCCTGAGGCCTTGTATCCAGCTGGGCAGCAAGGATGAAGCCAGTGGAATGGTGGCCCCCGCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS CAA 72 bp TGCACTGCGGGGGCCACCATTCCACTGGCTTCATCCTaGCTGCCCAGCTGGATACAAGGCCTCAGGGGCTTG +
Preference number: 6 (lower is better)
Translates to: CTAGATIPLASS*LPSWIQGLRGL
Trigger: CAAGCCCCTGAGGCCTTGTATCCAGCTGGGCAGCAAGGATGAAGCCAGTGGAATGGTGGCCCCCGCAGTGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS GCA 72 bp TCGGCGAAGGACACCCGCTTCTTCACCTTCTTCTCCTaGACTGCGGGGGCCACCATTCCACTGGCTTCATCC +
Preference number: 6 (lower is better)
Translates to: SAKDTRFFTFFS*TAGATIPLASS
Trigger: GGATGAAGCCAGTGGAATGGTGGCCCCCGCAGTGCAGGAGAAGAAGGTGAAGAAGCGGGTGTCCTTCGCCGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS CCA 72 bp CCTTCTTCTCCTGCACTGCGGGGGCCACCATTCCACTaGCTTCATCCTTGCTGCCCAGCTGGATACAAGGCC +
Preference number: 6 (lower is better)
Translates to: PSSPALRGPPFH*LHPCCPAGYKA
Trigger: GGCCTTGTATCCAGCTGGGCAGCAAGGATGAAGCCAGTGGAATGGTGGCCCCCGCAGTGCAGGAGAAGAAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS CCA 72 bp GCCACCATTCCACTGGCTTCATCCTTGCTGCCCAGCTaGATACAAGGCCTCAGGGGCTTGCTCAGTTTGGGG +
Preference number: 6 (lower is better)
Translates to: ATIPLASSLLPS*IQGLRGLLSLG
Trigger: CCCCAAACTGAGCAAGCCCCTGAGGCCTTGTATCCAGCTGGGCAGCAAGGATGAAGCCAGTGGAATGGTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS CAA 90 bp TTCTTCTCCTGCACTGCGGGGGCCACCATTCCACTGGCTTCATCCTaGCTGCCCAGCTGGATACAAGGCCTCAGGGGCTTGCTCAGTTTG +
Preference number: 6 (lower is better)
Translates to: FFSCTAGATIPLASS*LPSWIQGLRGLLSL
Trigger: CAAACTGAGCAAGCCCCTGAGGCCTTGTATCCAGCTGGGCAGCAAGGATGAAGCCAGTGGAATGGTGGCCCCCGCAGTGCAGGAGAAGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS CAA 90 bp CTGGCTTCATCCTTGCTGCCCAGCTGGATACAAGGCCTCAGGGGCTaGCTCAGTTTGGGGGAGATCTTGAAGGTGAAGCGCTCTCTGCGT +
Preference number: 6 (lower is better)
Translates to: LASSLLPSWIQGLRG*LSLGEILKVKRSLR
Trigger: ACGCAGAGAGCGCTTCACCTTCAAGATCTCCCCCAAACTGAGCAAGCCCCTGAGGCCTTGTATCCAGCTGGGCAGCAAGGATGAAGCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS CAA 72 bp CCCAGCTGGATACAAGGCCTCAGGGGCTTGCTCAGTTaGGGGGAGATCTTGAAGGTGAAGCGCTCTCTGCGT +
Preference number: 6 (lower is better)
Translates to: PSWIQGLRGLLS*GEILKVKRSLR
Trigger: ACGCAGAGAGCGCTTCACCTTCAAGATCTCCCCCAAACTGAGCAAGCCCCTGAGGCCTTGTATCCAGCTGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS CAA 90 bp TCCTTGCTGCCCAGCTGGATACAAGGCCTCAGGGGCTTGCTCAGTTaGGGGGAGATCTTGAAGGTGAAGCGCTCTCTGCGTAAAGAAGGG +
Preference number: 6 (lower is better)
Translates to: SLLPSWIQGLRGLLS*GEILKVKRSLRKEG
Trigger: CCCTTCTTTACGCAGAGAGCGCTTCACCTTCAAGATCTCCCCCAAACTGAGCAAGCCCCTGAGGCCTTGTATCCAGCTGGGCAGCAAGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS CCA 72 bp CGAAGGCCAGGTTCTGGACCTTCACGGTGCCCGCGATaGCCTTATCCTTCAGCACACAGTTTTCTAGGCAGA +
Preference number: 6 (lower is better)
Translates to: RRPGSGPSRCPR*PYPSAHSFLGR
Trigger: TCTGCCTAGAAAACTGTGTGCTGAAGGATAAGGCCATCGCGGGCACCGTGAAGGTCCAGAACCTGGCCTTCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS GCA 72 bp CAACCTTCTCGAAGGCCAGGTTCTGGACCTTCACGGTaGCCGCGATGGCCTTATCCTTCAGCACACAGTTTT +
Preference number: 6 (lower is better)
Translates to: QPSRRPGSGPSR*PRWPYPSAHSF
Trigger: AAAACTGTGTGCTGAAGGATAAGGCCATCGCGGGCACCGTGAAGGTCCAGAACCTGGCCTTCGAGAAGGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS CCA 72 bp ATCCTGATCTTCACAACCTTCTCGAAGGCCAGGTTCTaGACCTTCACGGTGCCCGCGATGGCCTTATCCTTC +
Preference number: 6 (lower is better)
Translates to: ILIFTTFSKARF*TFTVPAMALSF
Trigger: GAAGGATAAGGCCATCGCGGGCACCGTGAAGGTCCAGAACCTGGCCTTCGAGAAGGTTGTGAAGATCAGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS CAA 90 bp CGAGGGCTCCCAAACTGGTCAAAAGAGATTCCAAAATCTGGTCCATaGTACGGCTCAATCTTTCCCGGAGAGGATCGGAGTTCAGCCCGG +
Preference number: 6 (lower is better)
Translates to: RGLPNWSKEIPKSGP*YGSIFPGEDRSSAR
Trigger: CCGGGCTGAACTCCGATCCTCTCCGGGAAAGATTGAGCCGTACAATGGACCAGATTTTGGAATCTCTTTTGACCAGTTTGGGAGCCCTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS TCA 72 bp CAATCTTTCCCGGAGAGGATCGGAGTTCAGCCCGGGTaGTCCTGTAGTTTTTGCCTTTGTTGCTGTCCCAGT +
Preference number: 6 (lower is better)
Translates to: QSFPERIGVQPG*SCSFCLCCCPS
Trigger: ACTGGGACAGCAACAAAGGCAAAAACTACAGGATCACCCGGGCTGAACTCCGATCCTCTCCGGGAAAGATTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS CCA 72 bp CCCCAGCTTTTCATATCCCAGATAACTAGGCCACTCTaGAAACAGGCCAAAGGAACACCGAGGGCTCCCAAA +
Preference number: 6 (lower is better)
Translates to: PQLFISQITRPL*KQAKGTPRAPK
Trigger: TTTGGGAGCCCTCGGTGTTCCTTTGGCCTGTTTCCAGAGTGGCCTAGTTATCTGGGATATGAAAAGCTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS CCA 72 bp AGGGCTCCCAAACTGGTCAAAAGAGATTCCAAAATCTaGTCCATTGTACGGCTCAATCTTTCCCGGAGAGGA +
Preference number: 6 (lower is better)
Translates to: RAPKLVKRDSKI*SIVRLNLSRRG
Trigger: TCCTCTCCGGGAAAGATTGAGCCGTACAATGGACCAGATTTTGGAATCTCTTTTGACCAGTTTGGGAGCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS CCA 72 bp GGAAACAGGCCAAAGGAACACCGAGGGCTCCCAAACTaGTCAAAAGAGATTCCAAAATCTGGTCCATTGTAC +
Preference number: 6 (lower is better)
Translates to: GNRPKEHRGLPN*SKEIPKSGPLY
Trigger: GTACAATGGACCAGATTTTGGAATCTCTTTTGACCAGTTTGGGAGCCCTCGGTGTTCCTTTGGCCTGTTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS CAA 72 bp AAGCTCTCGCTCTCTGCTGTCGTCAGACTCACGATGTaGTCTAGGAGCTCGGTGATGTTAAAGGGAATATCT +
Preference number: 6 (lower is better)
Translates to: KLSLSAVVRLTM*SRSSVMLKGIS
Trigger: AGATATTCCCTTTAACATCACCGAGCTCCTAGACAACATCGTGAGTCTGACGACAGCAGAGAGCGAGAGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS CAA 90 bp TCCAAAACAAAGCTCTCGCTCTCTGCTGTCGTCAGACTCACGATGTaGTCTAGGAGCTCGGTGATGTTAAAGGGAATATCTAGTGGGTCA +
Preference number: 6 (lower is better)
Translates to: SKTKLSLSAVVRLTM*SRSSVMLKGISSGS
Trigger: TGACCCACTAGATATTCCCTTTAACATCACCGAGCTCCTAGACAACATCGTGAGTCTGACGACAGCAGAGAGCGAGAGCTTTGTTTTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS TCA 72 bp TTTCTAGGCAGACGTGGTTGGTCTGAAGGCGATTTCTaGAGTCTAAGTAATCTGCGGAAGGCTGCGGAAAAT +
Preference number: 6 (lower is better)
Translates to: FLGRRGWSEGDF*SLSNLRKAAEN
Trigger: ATTTTCCGCAGCCTTCCGCAGATTACTTAGACTTCAGAAATCGCCTTCAGACCAACCACGTCTGCCTAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS CAA 72 bp CCAAACTGGTCAAAAGAGATTCCAAAATCTGGTCCATaGTACGGCTCAATCTTTCCCGGAGAGGATCGGAGT +
Preference number: 6 (lower is better)
Translates to: PNWSKEIPKSGP*YGSIFPGEDRS
Trigger: ACTCCGATCCTCTCCGGGAAAGATTGAGCCGTACAATGGACCAGATTTTGGAATCTCTTTTGACCAGTTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2
CDS TCA 72 bp CCATTCTTTCGTAAGACTGAATTTTCTCGGGTAAGCTaGTGTCAAAGGAGAATGTGTCCCTGTCTGAACCAG +
Preference number: 6 (lower is better)
Translates to: PFFRKTEFSRVS*CQRRMCPCLNQ
Trigger: CTGGTTCAGACAGGGACACATTCTCCTTTGACATCAGCTTACCCGAGAAAATTCAGTCTTACGAAAGAATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070481.8
ENSMUST00000210337.2
ENSMUST00000211648.2