Pregenerated sensors for PPP1R36 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000052221Ensembl transcript IDs: ENSMUST00000063977.9, ENSMUST00000220187.2
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | TGGAGAAGTAGTTACTTCAAATATAGAGACCTAGGTAAGGAACTGGAACCAATTGATGCTTATCCGCCATaGCCAAGCCCAGCACGAGGA | + |
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Preference number: 4 (lower is better) Translates to: WRSSYFKYRDLGKELEPIDAYPP*PSPARG Trigger: TCCTCGTGCTGGGCTTGGGCATGGCGGATAAGCATC...AATTGGTTCCAGTTCCTTACCTAGGTCTCTATATTTGAAGTAACTACTTCTCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS-3UTR GCA 90 bp | TGGAGAAGTAGTTACTTCAAATATAGAGACCTAGGTAAGGAACTGGAACCAATTAGCCCAGCACGAGGATaGAGTACTTCTGAGCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: WRSSYFKYRDLGKELEPISPARG*STSEPG Trigger: ACCTGGCTCAGAAGTACTGCATCCTCGTGCTGGGCT...AATTGGTTCCAGTTCCTTACCTAGGTCTCTATATTTGAAGTAACTACTTCTCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS-3UTR TCA 90 bp | TGGAGAAGTAGTTACTTCAAATATAGAGACCTAGGTAAGGAACTGGAACCAATTTCCTCAAAAACGTGGTaGAGGAGCAGATCCGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: WRSSYFKYRDLGKELEPISSKTW*RSRSAA Trigger: TGCAGCGGATCTGCTCCTTCACCACGTTTTTGAGGA...AATTGGTTCCAGTTCCTTACCTAGGTCTCTATATTTGAAGTAACTACTTCTCCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS-3UTR TCA 90 bp | TGGAGAAGTAGTTACTTCAAATATAGAGACCTAGGTAAGGAACTGGAACCAATTTTTCCACAGCTCAAGTaGTGCTTATCCGCCATGCCC | + |
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Preference number: 4 (lower is better) Translates to: WRSSYFKYRDLGKELEPIFPQLK*CLSAMP Trigger: GGGCATGGCGGATAAGCATCACTTGAGCTGTGGAAA...AATTGGTTCCAGTTCCTTACCTAGGTCTCTATATTTGAAGTAACTACTTCTCCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS-3UTR CCA 90 bp | TGGAGAAGTAGTTACTTCAAATATAGAGACCTAGGTAAGGAACTGGAACCAATTTGCATTTCAGTGTCCTaGAGGGACAGCAGGGCAACA | + |
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Preference number: 4 (lower is better) Translates to: WRSSYFKYRDLGKELEPICISVS*RDSRAT Trigger: TGTTGCCCTGCTGTCCCTCCAGGACACTGAAATGCA...AATTGGTTCCAGTTCCTTACCTAGGTCTCTATATTTGAAGTAACTACTTCTCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS-3UTR TCA 90 bp | TGGAGAAGTAGTTACTTCAAATATAGAGACCTAGGTAAGGAACTGGAACCAATTAGGATGCAGTACTTCTaGGCCAGGTACTTCTGTGCA | + |
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Preference number: 4 (lower is better) Translates to: WRSSYFKYRDLGKELEPIRMQYF*ARYFCA Trigger: TGCACAGAAGTACCTGGCTCAGAAGTACTGCATCCT...AATTGGTTCCAGTTCCTTACCTAGGTCTCTATATTTGAAGTAACTACTTCTCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS-3UTR TCA 90 bp | TGGAGAAGTAGTTACTTCAAATATAGAGACCTAGGTAAGGAACTGGAACCAATTATCTCTGTCAAGTACTaGCGTCGGAAGACGATCCAG | + |
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Preference number: 4 (lower is better) Translates to: WRSSYFKYRDLGKELEPIISVKY*RRKTIQ Trigger: CTGGATCGTCTTCCGACGTCAGTACTTGACAGAGAT...AATTGGTTCCAGTTCCTTACCTAGGTCTCTATATTTGAAGTAACTACTTCTCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS-3UTR TCA 90 bp | TGGAGAAGTAGTTACTTCAAATATAGAGACCTAGGTAAGGAACTGGAACCAATTCTTCTTCTCTCCTCCTaGCGCTTCGTCTTCATGCTT | + |
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Preference number: 4 (lower is better) Translates to: WRSSYFKYRDLGKELEPILLLSS*RFVFML Trigger: AAGCATGAAGACGAAGCGTCAGGAGGAGAGAAGAAG...AATTGGTTCCAGTTCCTTACCTAGGTCTCTATATTTGAAGTAACTACTTCTCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS-3UTR TCA 90 bp | TGGAGAAGTAGTTACTTCAAATATAGAGACCTAGGTAAGGAACTGGAACCAATTCTCGGGGTTGGAGTTTaGTGCCTGCCACATACTTTT | + |
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Preference number: 4 (lower is better) Translates to: WRSSYFKYRDLGKELEPILGVGV*CLPHTF Trigger: AAAAGTATGTGGCAGGCATCAAACTCCAACCCCGAG...AATTGGTTCCAGTTCCTTACCTAGGTCTCTATATTTGAAGTAACTACTTCTCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS-3UTR GCA 90 bp | TGGAGAAGTAGTTACTTCAAATATAGAGACCTAGGTAAGGAACTGGAACCAATTTGGTCCGAAAAAGCCTaGCTACCTCTTCCTCGATCT | + |
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Preference number: 4 (lower is better) Translates to: WRSSYFKYRDLGKELEPIWSEKA*LPLPRS Trigger: AGATCGAGGAAGAGGTAGGCAGGCTTTTTCGGACCA...AATTGGTTCCAGTTCCTTACCTAGGTCTCTATATTTGAAGTAACTACTTCTCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS-3UTR GCA 90 bp | TGGAGAAGTAGTTACTTCAAATATAGAGACCTAGGTAAGGAACTGGAACCAATTACTGTACCAATGTCATaGGCTTCTTCTCTCCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: WRSSYFKYRDLGKELEPITVPMS*ASSLLL Trigger: CAGGAGGAGAGAAGAAGCGCATGACATTGGTACAGT...AATTGGTTCCAGTTCCTTACCTAGGTCTCTATATTTGAAGTAACTACTTCTCCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS-3UTR CCA 90 bp | TGGAGAAGTAGTTACTTCAAATATAGAGACCTAGGTAAGGAACTGGAACCAATTCAAACTGCTTTCTCCTaGAGTAAAACTCTGGGACGG | + |
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Preference number: 4 (lower is better) Translates to: WRSSYFKYRDLGKELEPIQTAFS*SKTLGR Trigger: CCGTCCCAGAGTTTTACTCCAGGAGAAAGCAGTTTG...AATTGGTTCCAGTTCCTTACCTAGGTCTCTATATTTGAAGTAACTACTTCTCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS-3UTR GCA 90 bp | TGGAGAAGTAGTTACTTCAAATATAGAGACCTAGGTAAGGAACTGGAACCAATTAATTGCTGGACGTTTTaGCATCATTCTCCTGAACTG | + |
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Preference number: 4 (lower is better) Translates to: WRSSYFKYRDLGKELEPINCWTF*HHSPEL Trigger: CAGTTCAGGAGAATGATGGCAAAACGTCCAGCAATT...AATTGGTTCCAGTTCCTTACCTAGGTCTCTATATTTGAAGTAACTACTTCTCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS-3UTR TCA 90 bp | TGGAGAAGTAGTTACTTCAAATATAGAGACCTAGGTAAGGAACTGGAACCAATTTTCTCTGTGATATGTTaGGCTTTTTCTCTGAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: WRSSYFKYRDLGKELEPIFSVIC*AFSLRD Trigger: GTCTCTCAGAGAAAAAGCTCAACATATCACAGAGAA...AATTGGTTCCAGTTCCTTACCTAGGTCTCTATATTTGAAGTAACTACTTCTCCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS-3UTR CCA 90 bp | TGGAGAAGTAGTTACTTCAAATATAGAGACCTAGGTAAGGAACTGGAACCAATTGGCCTTTTTAATTGCTaGACGTTTTGCCATCATTCT | + |
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Preference number: 4 (lower is better) Translates to: WRSSYFKYRDLGKELEPIGLFNC*TFCHHS Trigger: AGAATGATGGCAAAACGTCCAGCAATTAAAAAGGCC...AATTGGTTCCAGTTCCTTACCTAGGTCTCTATATTTGAAGTAACTACTTCTCCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS-3UTR GCA 90 bp | TGGAGAAGTAGTTACTTCAAATATAGAGACCTAGGTAAGGAACTGGAACCAATTCTCCTTGAGTTCTATTaGAGGTGTGAAACTTTTAAA | + |
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Preference number: 4 (lower is better) Translates to: WRSSYFKYRDLGKELEPILLEFY*RCETFK Trigger: TTTAAAAGTTTCACACCTGCAATAGAACTCAAGGAG...AATTGGTTCCAGTTCCTTACCTAGGTCTCTATATTTGAAGTAACTACTTCTCCA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS TCA 90 bp | CTGCTGACTTCGTTTCTCCAAAGCCTTAGCCGCCTTCTCATCCCTTaGGGCAAACCTTTTATCTGTCAACCTTTCCGAAGCTCCGCTGTC | + |
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Preference number: 5 (lower is better) Translates to: LLTSFLQSLSRLLIP*GKPFICQPFRSSAV Trigger: GACAGCGGAGCTTCGGAAAGGTTGACAGATAAAAGGTTTGCCTCAAGGGATGAGAAGGCGGCTAAGGCTTTGGAGAAACGAAGTCAGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS GCA 90 bp | AGCTCAAGTGATGCTTATCCGCCATGCCCAAGCCCAGCACGAGGATaGAGTACTTCTGAGCCAGGTACTTCTGTGCATCTTCTAACTTGT | + |
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Preference number: 5 (lower is better) Translates to: SSSDAYPPCPSPARG*STSEPGTSVHLLTC Trigger: ACAAGTTAGAAGATGCACAGAAGTACCTGGCTCAGAAGTACTGCATCCTCGTGCTGGGCTTGGGCATGGCGGATAAGCATCACTTGAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS TCA 90 bp | TTATCTGTCAACCTTTCCGAAGCTCCGCTGTCCATCTCAGCAAAGTaGACCGCCTTCCCTTTCTTGCCTTTCTCCTTGAGTTCTATTGCA | + |
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Preference number: 5 (lower is better) Translates to: LSVNLSEAPLSISAK*TAFPFLPFSLSSIA Trigger: TGCAATAGAACTCAAGGAGAAAGGCAAGAAAGGGAAGGCGGTTCACTTTGCTGAGATGGACAGCGGAGCTTCGGAAAGGTTGACAGATAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS CCA 90 bp | ATTCGGGTTGAACAGATTTCGAGGCTCCCCCAAGATGCCAACTATTaGCATAGCCACAGATTCCAGATCTGTTATTATGTTCTCCTCTCG | + |
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Preference number: 5 (lower is better) Translates to: IRVEQISRLPQDANY*HSHRFQICYYVLLS Trigger: CGAGAGGAGAACATAATAACAGATCTGGAATCTGTGGCTATGCCAATAGTTGGCATCTTGGGGGAGCCTCGAAATCTGTTCAACCCGAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS TCA 90 bp | CTGCTGACTTCGTTTCTCCAAAGCCTTAGCCGCCTTCTCATCCCTTaGGGCAAACCTTTTATCTGTCAACCTTTTAAATTCCAGAGTTTT | + |
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Preference number: 5 (lower is better) Translates to: LLTSFLQSLSRLLIP*GKPFICQPFKFQSF Trigger: AAAACTCTGGAATTTAAAAGGTTGACAGATAAAAGGTTTGCCTCAAGGGATGAGAAGGCGGCTAAGGCTTTGGAGAAACGAAGTCAGCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220187.2 |
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| CDS-3UTR CAA 90 bp | TGGAGAAGTAGTTACTTCAAATATAGAGACCTAGGTAAGGAACTGGAACCAATTACCGCCTTCCCTTTCTaGCCTTTCTCCTTGAGTTCT | + |
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Preference number: 5 (lower is better) Translates to: WRSSYFKYRDLGKELEPITAFPF*PFSLSS Trigger: AGAACTCAAGGAGAAAGGCAAGAAAGGGAAGGCGGT...AATTGGTTCCAGTTCCTTACCTAGGTCTCTATATTTGAAGTAACTACTTCTCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS-3UTR CAA 90 bp | TGGAGAAGTAGTTACTTCAAATATAGAGACCTAGGTAAGGAACTGGAACCAATTCCGCCTTCTCATCCCTaGAGGCAAACCTTTTATCTG | + |
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Preference number: 5 (lower is better) Translates to: WRSSYFKYRDLGKELEPIPPSHP*RQTFYL Trigger: CAGATAAAAGGTTTGCCTCAAGGGATGAGAAGGCGG...AATTGGTTCCAGTTCCTTACCTAGGTCTCTATATTTGAAGTAACTACTTCTCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS GCA 90 bp | AAAGTGAACCGCCTTCCCTTTCTTGCCTTTCTCCTTGAGTTCTATTaGAGGTGTGAAACTTTTAAATTCCAGAGTTTTTGTTTCGTCTTT | + |
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Preference number: 5 (lower is better) Translates to: KVNRLPFLAFLLEFY*RCETFKFQSFCFVF Trigger: AAAGACGAAACAAAAACTCTGGAATTTAAAAGTTTCACACCTGCAATAGAACTCAAGGAGAAAGGCAAGAAAGGGAAGGCGGTTCACTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS-3UTR CAA 90 bp | TGGAGAAGTAGTTACTTCAAATATAGAGACCTAGGTAAGGAACTGGAACCAATTGGAATGTTAAACATATaGGTCCGAAAAAGCCTGCCT | + |
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Preference number: 5 (lower is better) Translates to: WRSSYFKYRDLGKELEPIGMLNI*VRKSLP Trigger: AGGCAGGCTTTTTCGGACCAATATGTTTAACATTCC...AATTGGTTCCAGTTCCTTACCTAGGTCTCTATATTTGAAGTAACTACTTCTCCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS-3UTR CAA 90 bp | TGGAGAAGTAGTTACTTCAAATATAGAGACCTAGGTAAGGAACTGGAACCAATTTTTCTCTGTGATATGTaGAGCTTTTTCTCTGAGAGA | + |
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Preference number: 5 (lower is better) Translates to: WRSSYFKYRDLGKELEPIFLCDM*SFFSER Trigger: TCTCTCAGAGAAAAAGCTCAACATATCACAGAGAAA...AATTGGTTCCAGTTCCTTACCTAGGTCTCTATATTTGAAGTAACTACTTCTCCA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS-3UTR CAA 90 bp | TGGAGAAGTAGTTACTTCAAATATAGAGACCTAGGTAAGGAACTGGAACCAATTGTGTGTTTTGGATCTTaGTGTTATTTGTCTCGACTA | + |
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Preference number: 5 (lower is better) Translates to: WRSSYFKYRDLGKELEPIVCFGS*CYLSRL Trigger: TAGTCGAGACAAATAACACAAAGATCCAAAACACAC...AATTGGTTCCAGTTCCTTACCTAGGTCTCTATATTTGAAGTAACTACTTCTCCA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS GCA 72 bp | GATGCTTATCCGCCATGCCCAAGCCCAGCACGAGGATaGAGTACTTCTGAGCCAGGTACTTCTGTGCATCTT | + |
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Preference number: 6 (lower is better) Translates to: DAYPPCPSPARG*STSEPGTSVHL Trigger: AAGATGCACAGAAGTACCTGGCTCAGAAGTACTGCATCCTCGTGCTGGGCTTGGGCATGGCGGATAAGCATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS TCA 72 bp | GCCATGCCCAAGCCCAGCACGAGGATGCAGTACTTCTaGGCCAGGTACTTCTGTGCATCTTCTAACTTGTTC | + |
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Preference number: 6 (lower is better) Translates to: AMPKPSTRMQYF*ARYFCASSNLF Trigger: GAACAAGTTAGAAGATGCACAGAAGTACCTGGCTCAGAAGTACTGCATCCTCGTGCTGGGCTTGGGCATGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS TCA 72 bp | AACCTTTCCGAAGCTCCGCTGTCCATCTCAGCAAAGTaGACCGCCTTCCCTTTCTTGCCTTTCTCCTTGAGT | + |
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Preference number: 6 (lower is better) Translates to: NLSEAPLSISAK*TAFPFLPFSLS Trigger: ACTCAAGGAGAAAGGCAAGAAAGGGAAGGCGGTTCACTTTGCTGAGATGGACAGCGGAGCTTCGGAAAGGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS TCA 72 bp | TCGTTTCTCCAAAGCCTTAGCCGCCTTCTCATCCCTTaGGGCAAACCTTTTATCTGTCAACCTTTCCGAAGC | + |
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Preference number: 6 (lower is better) Translates to: SFLQSLSRLLIP*GKPFICQPFRS Trigger: GCTTCGGAAAGGTTGACAGATAAAAGGTTTGCCTCAAGGGATGAGAAGGCGGCTAAGGCTTTGGAGAAACGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS TCA 72 bp | GGAAGCTGTCAAGATTCTTATTCCTCAAAAACGTGGTaGAGGAGCAGATCCGCTGCATTTCAGTGTCCTGGA | + |
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Preference number: 6 (lower is better) Translates to: GSCQDSYSSKTW*RSRSAAFQCPG Trigger: TCCAGGACACTGAAATGCAGCGGATCTGCTCCTTCACCACGTTTTTGAGGAATAAGAATCTTGACAGCTTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000063977.9 ENSMUST00000220187.2 |
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| CDS CAA 72 bp | TCGTCTTCATGCTTCCTTCGAGGAATGTTAAACATATaGGTCCGAAAAAGCCTGCCTACCTCTTCCTCGATC | + |
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Preference number: 6 (lower is better) Translates to: SSSCFLRGMLNI*VRKSLPTSSSI Trigger: GATCGAGGAAGAGGTAGGCAGGCTTTTTCGGACCAATATGTTTAACATTCCTCGAAGGAAGCATGAAGACGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS CCA 72 bp | GATTCCAGATCTGTTATTATGTTCTCCTCTCGGGGTTaGAGTTTGATGCCTGCCACATACTTTTTCTCTGTG | + |
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Preference number: 6 (lower is better) Translates to: DSRSVIMFSSRG*SLMPATYFFSV Trigger: CACAGAGAAAAAGTATGTGGCAGGCATCAAACTCCAACCCCGAGAGGAGAACATAATAACAGATCTGGAATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS CCA 72 bp | GAACAGATTTCGAGGCTCCCCCAAGATGCCAACTATTaGCATAGCCACAGATTCCAGATCTGTTATTATGTT | + |
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Preference number: 6 (lower is better) Translates to: EQISRLPQDANY*HSHRFQICYYV Trigger: AACATAATAACAGATCTGGAATCTGTGGCTATGCCAATAGTTGGCATCTTGGGGGAGCCTCGAAATCTGTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS TCA 72 bp | TCGTTTCTCCAAAGCCTTAGCCGCCTTCTCATCCCTTaGGGCAAACCTTTTATCTGTCAACCTTTTAAATTC | + |
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Preference number: 6 (lower is better) Translates to: SFLQSLSRLLIP*GKPFICQPFKF Trigger: GAATTTAAAAGGTTGACAGATAAAAGGTTTGCCTCAAGGGATGAGAAGGCGGCTAAGGCTTTGGAGAAACGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220187.2 |
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| CDS CAA 72 bp | AGATTCCAGATCTGTTATTATGTTCTCCTCTCGGGGTaGGAGTTTGATGCCTGCCACATACTTTTTCTCTGT | + |
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Preference number: 6 (lower is better) Translates to: RFQICYYVLLSG*EFDACHILFLC Trigger: ACAGAGAAAAAGTATGTGGCAGGCATCAAACTCCAACCCCGAGAGGAGAACATAATAACAGATCTGGAATCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS TCA 72 bp | TCTGCAGGTAATAAGACAGATAGTACAACAGCGCCATaGGGAAGCTGTCAAGATTCTTATTCCTCAAAAACG | + |
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Preference number: 6 (lower is better) Translates to: SAGNKTDSTTAP*GSCQDSYSSKT Trigger: CGTTTTTGAGGAATAAGAATCTTGACAGCTTCCTCATGGCGCTGTTGTACTATCTGTCTTATTACCTGCAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000063977.9 ENSMUST00000220187.2 |
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| CDS CAA 72 bp | AGATCTGTTATTATGTTCTCCTCTCGGGGTTGGAGTTaGATGCCTGCCACATACTTTTTCTCTGTGATATGT | + |
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Preference number: 6 (lower is better) Translates to: RSVIMFSSRGWS*MPATYFFSVIC Trigger: ACATATCACAGAGAAAAAGTATGTGGCAGGCATCAAACTCCAACCCCGAGAGGAGAACATAATAACAGATCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS CAA 72 bp | TTGTCTCGACTATGGAAGAACTTCTTCCACTTGGTTTaGTGTTTTCTTCTAATTCCAGGGGGAGGAGAGTAT | + |
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Preference number: 6 (lower is better) Translates to: LSRLWKNFFHLV*CFLLIPGGGEY Trigger: ATACTCTCCTCCCCCTGGAATTAGAAGAAAACACAAAACCAAGTGGAAGAAGTTCTTCCATAGTCGAGACAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS GCA 72 bp | CGCCTTCCCTTTCTTGCCTTTCTCCTTGAGTTCTATTaGAGGTGTGAAACTTTTAAATTCCAGAGTTTTTGT | + |
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Preference number: 6 (lower is better) Translates to: RLPFLAFLLEFY*RCETFKFQSFC Trigger: ACAAAAACTCTGGAATTTAAAAGTTTCACACCTGCAATAGAACTCAAGGAGAAAGGCAAGAAAGGGAAGGCG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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| CDS CCA 72 bp | GAAGCTAGTTTTGACATGACTAAACTCAGTGTGTTTTaGATCTTTGTGTTATTTGTCTCGACTATGGAAGAA | + |
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Preference number: 6 (lower is better) Translates to: EASFDMTKLSVF*IFVLFVSTMEE Trigger: TTCTTCCATAGTCGAGACAAATAACACAAAGATCCAAAACACACTGAGTTTAGTCATGTCAAAACTAGCTTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063977.9 |
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