RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PPP1R26 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035829

Ensembl transcript IDs: ENSMUST00000040324.14, ENSMUST00000189694.2

Found 386 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCCATGCAGCCTGCTGGTGTCATCACTGGTCACCCACAGCAGCTGTaGGAGGGTTTGCCCTCACTGCTTCCAGGGCTGGGGCTCACCATC +
Preference number: 1 (lower is better)
Translates to: AMQPAGVITGHPQQL*EGLPSLLPGLGLTI
Trigger: GATGGTGAGCCCCAGCCCTGGAAGCAGTGAGGGCAAACCCTCCCACAGCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR GCA 90 bp CTGCTGGTGTCATCACTGGTCACCCACAGCAGCTGTGGGAGGGTTTaGCCTCACTGCTTCCAGGGCTGGGGCTCACCATCACAGGTGGCT +
Preference number: 1 (lower is better)
Translates to: LLVSSLVTHSSCGRV*PHCFQGWGSPSQVA
Trigger: AGCCACCTGTGATGGTGAGCCCCAGCCCTGGAAGCAGTGAGGGCAAACCCTCCCACAGCTGCTGTGGGTGACCAGTGATGACACCAGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR GCA 90 bp AGCACCAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTaGGGTCTGGCCTCAGCACTGGCCAGAGCCTTCTTTCTCCTGGGT +
Preference number: 1 (lower is better)
Translates to: STKAVSLPNSQDPSA*GLASALARAFFLLG
Trigger: ACCCAGGAGAAAGAAGGCTCTGGCCAGTGCTGAGGCCAGACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR CCA 90 bp ACCCACAGCAGCTGTGGGAGGGTTTGCCCTCACTGCTTCCAGGGCTaGGGCTCACCATCACAGGTGGCTAAGGTGTTTGGAGACCAAGCC +
Preference number: 1 (lower is better)
Translates to: THSSCGRVCPHCFQG*GSPSQVAKVFGDQA
Trigger: GGCTTGGTCTCCAAACACCTTAGCCACCTGTGATGGTGAGCCCCAGCCCTGGAAGCAGTGAGGGCAAACCCTCCCACAGCTGCTGTGGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR CCA 90 bp TGCCAAACTCCCAGGACCCCAGTGCCTGCGGTCTGGCCTCAGCACTaGCCAGAGCCTTCTTTCTCCTGGGTAGAGGCAGCATTGCAGAAA +
Preference number: 1 (lower is better)
Translates to: CQTPRTPVPAVWPQH*PEPSFSWVEAALQK
Trigger: TTTCTGCAATGCTGCCTCTACCCAGGAGAAAGAAGGCTCTGGCCAGTGCTGAGGCCAGACCGCAGGCACTGGGGTCCTGGGAGTTTGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR GCA 90 bp TCATCACTGGTCACCCACAGCAGCTGTGGGAGGGTTTGCCCTCACTaGTTCCAGGGCTGGGGCTCACCATCACAGGTGGCTAAGGTGTTT +
Preference number: 1 (lower is better)
Translates to: SSLVTHSSCGRVCPH*FQGWGSPSQVAKVF
Trigger: AAACACCTTAGCCACCTGTGATGGTGAGCCCCAGCCCTGGAAGCAGTGAGGGCAAACCCTCCCACAGCTGCTGTGGGTGACCAGTGATGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR CCA 90 bp TTTCTCCTGGGTAGAGGCAGCATTGCAGAAAGCCATGCAGCCTGCTaGTGTCATCACTGGTCACCCACAGCAGCTGTGGGAGGGTTTGCC +
Preference number: 1 (lower is better)
Translates to: FLLGRGSIAESHAAC*CHHWSPTAAVGGFA
Trigger: GGCAAACCCTCCCACAGCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATGCTGCCTCTACCCAGGAGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR GCA 90 bp TTCTTTCTCCTGGGTAGAGGCAGCATTGCAGAAAGCCATGCAGCCTaGTGGTGTCATCACTGGTCACCCACAGCAGCTGTGGGAGGGTTT +
Preference number: 1 (lower is better)
Translates to: FFLLGRGSIAESHAA*WCHHWSPTAAVGGF
Trigger: AAACCCTCCCACAGCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATGCTGCCTCTACCCAGGAGAAAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR TCA 90 bp AGGCCTGAATATCTTCACAAGCAAAGCGGTTCCAGCCTCTGTCTCTaGCCCTCACAGGGACAGGCAGAACCAAGGGTCTACTCACCTACC +
Preference number: 1 (lower is better)
Translates to: RPEYLHKQSGSSLCL*PSQGQAEPRVYSPT
Trigger: GGTAGGTGAGTAGACCCTTGGTTCTGCCTGTCCCTGTGAGGGTCAGAGACAGAGGCTGGAACCGCTTTGCTTGTGAAGATATTCAGGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR CCA 90 bp CTGCCACCACATCAAAGTTCCAACGTGGCAGATGGGGAGGATGGTTaGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACCCA +
Preference number: 1 (lower is better)
Translates to: LPPHQSSNVADGEDG*SVCQHLGTFYNSDP
Trigger: TGGGTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCCTCCCCATCTGCCACGTTGGAACTTTGATGTGGTGGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR CCA 90 bp TCACCATCACAGGTGGCTAAGGTGTTTGGAGACCAAGCCATCTCATaGCCTCACTACTCACCCATACACACATCACAAACAGGACAGTCA +
Preference number: 1 (lower is better)
Translates to: SPSQVAKVFGDQAIS*PHYSPIHTSQTGQS
Trigger: TGACTGTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCCATGAGATGGCTTGGTCTCCAAACACCTTAGCCACCTGTGATGGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR GCA 90 bp AAGTTAGTGTACATATTTATATTTATATTAGGGGTGGATGGGAGCTaGATGGAAGGGACCCAATTTTTGCTCTTTATCTGTCATGATCCC +
Preference number: 1 (lower is better)
Translates to: KLVYIFIFILGVDGS*MEGTQFLLFICHDP
Trigger: GGGATCATGACAGATAAAGAGCAAAAATTGGGTCCCTTCCATGCAGCTCCCATCCACCCCTAATATAAATATAAATATGTACACTAACTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR CCA 90 bp TCATTTGAAGTTAGTGTACATATTTATATTTATATTAGGGGTGGATaGGAGCTGCATGGAAGGGACCCAATTTTTGCTCTTTATCTGTCA +
Preference number: 1 (lower is better)
Translates to: SFEVSVHIYIYIRGG*ELHGRDPIFALYLS
Trigger: TGACAGATAAAGAGCAAAAATTGGGTCCCTTCCATGCAGCTCCCATCCACCCCTAATATAAATATAAATATGTACACTAACTTCAAATGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR CAA 90 bp CCTGCTGGTGTCATCACTGGTCACCCACAGCAGCTGTGGGAGGGTTaGCCCTCACTGCTTCCAGGGCTGGGGCTCACCATCACAGGTGGC +
Preference number: 2 (lower is better)
Translates to: PAGVITGHPQQLWEG*PSLLPGLGLTITGG
Trigger: GCCACCTGTGATGGTGAGCCCCAGCCCTGGAAGCAGTGAGGGCAAACCCTCCCACAGCTGCTGTGGGTGACCAGTGATGACACCAGCAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR TCA 90 bp ACAGGCACCTCAGCACCAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTGTCCAGCCTCTGTCTCTaGCCCTCACAGGGACAGGCA +
Preference number: 2 (lower is better)
Translates to: TGTSAPRQYHCQTPRTPVSSLCL*PSQGQA
Trigger: TGCCTGTCCCTGTGAGGGTCAGAGACAGAGGCTGGA...CACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGAGGTGCCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR GCA 90 bp CATTGCAGAAAGCCATGCAGCCTGCTGGTGTCATCACTGGTCACCCACAGCAGCAGGGTTTGCCCTCACTaGTTCCAGGGCTGGGGCTCA +
Preference number: 2 (lower is better)
Translates to: HCRKPCSLLVSSLVTHSSRVCPH*FQGWGS
Trigger: TGAGCCCCAGCCCTGGAAGCAGTGAGGGCAAACCCT...GCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR CCA 90 bp CCACAACGGGACCACAGAGCCTGCCACCACATCAAAGTTCCAACGTGGCAGATGCACCCACAGCAGCTGTaGGAGGGTTTGCCCTCACTG +
Preference number: 2 (lower is better)
Translates to: PQRDHRACHHIKVPTWQMHPQQL*EGLPSL
Trigger: CAGTGAGGGCAAACCCTCCCACAGCTGCTGTGGGTG...CATCTGCCACGTTGGAACTTTGATGTGGTGGCAGGCTCTGTGGTCCCGTTGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR TCA 90 bp CCTGCTGGTGTCATCACTGGTCACCCACAGCAGCTGTGGGAGGGTTTGCCCTCACTACCACACATGCACTaGGACCCAGAACTGCAGCTA +
Preference number: 2 (lower is better)
Translates to: PAGVITGHPQQLWEGLPSLPHMH*DPELQL
Trigger: TAGCTGCAGTTCTGGGTCTCAGTGCATGTGTGGTAG...TGAGGGCAAACCCTCCCACAGCTGCTGTGGGTGACCAGTGATGACACCAGCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR CCA 90 bp AGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTGCGGTCTGGCCTCAGCACTGAGCCTTCTTTCTCCTaGGTAGAGGCAGCATTGCAG +
Preference number: 2 (lower is better)
Translates to: SITAKLPGPQCLRSGLSTEPSFS*VEAALQ
Trigger: CTGCAATGCTGCCTCTACCCAGGAGAAAGAAGGCTC...AGTGCTGAGGCCAGACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR GCA 90 bp CCTGCTGGTGTCATCACTGGTCACCCACAGCAGCTGTGGGAGGGTTTGCCCTCAACAGACAGGCATGCATaGACACACATCAGGCAAGAC +
Preference number: 2 (lower is better)
Translates to: PAGVITGHPQQLWEGLPSTDRHA*THIRQD
Trigger: GTCTTGCCTGATGTGTGTGCATGCATGCCTGTCTGT...TGAGGGCAAACCCTCCCACAGCTGCTGTGGGTGACCAGTGATGACACCAGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR CAA 90 bp ACTGCTTCCAGGGCTGGGGCTCACCATCACAGGTGGCTAAGGTGTTaGGAGACCAAGCCATCTCATGGCCTCACTACTCACCCATACACA +
Preference number: 2 (lower is better)
Translates to: TASRAGAHHHRWLRC*ETKPSHGLTTHPYT
Trigger: TGTGTATGGGTGAGTAGTGAGGCCATGAGATGGCTTGGTCTCCAAACACCTTAGCCACCTGTGATGGTGAGCCCCAGCCCTGGAAGCAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR CCA 90 bp CATTGCAGAAAGCCATGCAGCCTGCTGGTGTCATCACTGGTCACCCACAGCAGCTGGATGGGAGCTGCATaGAAGGGACCCAATTTTTGC +
Preference number: 2 (lower is better)
Translates to: HCRKPCSLLVSSLVTHSSWMGAA*KGPNFC
Trigger: GCAAAAATTGGGTCCCTTCCATGCAGCTCCCATCCA...GCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR CCA 90 bp CCACAACGGGACCACAGAGCCTGCCACCACATCAAAGTTCCAACGTGGCAGATGTGGATGGGAGCTGCATaGAAGGGACCCAATTTTTGC +
Preference number: 2 (lower is better)
Translates to: PQRDHRACHHIKVPTWQMWMGAA*KGPNFC
Trigger: GCAAAAATTGGGTCCCTTCCATGCAGCTCCCATCCA...CATCTGCCACGTTGGAACTTTGATGTGGTGGCAGGCTCTGTGGTCCCGTTGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR CCA 90 bp TTAGGACCACAACGGGACCACAGAGCCTGCCACCACATCAAAGTTCCAACGTGGGAGCCTTCTTTCTCCTaGGTAGAGGCAGCATTGCAG +
Preference number: 2 (lower is better)
Translates to: LGPQRDHRACHHIKVPTWEPSFS*VEAALQ
Trigger: CTGCAATGCTGCCTCTACCCAGGAGAAAGAAGGCTC...CCACGTTGGAACTTTGATGTGGTGGCAGGCTCTGTGGTCCCGTTGTGGTCCTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR GCA 90 bp CCACAACGGGACCACAGAGCCTGCCACCACATCAAAGTTCCAACGTGGCAGATGTCCAGAATACTGAGCTaGAGAACTCAGGGAAGACAG +
Preference number: 2 (lower is better)
Translates to: PQRDHRACHHIKVPTWQMSRILS*RTQGRQ
Trigger: CTGTCTTCCCTGAGTTCTGCAGCTCAGTATTCTGGA...CATCTGCCACGTTGGAACTTTGATGTGGTGGCAGGCTCTGTGGTCCCGTTGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR CCA 90 bp GATGTAATCTTCACATCTGGGCTCCAGCACATCTTCAGTTCCCAGTTGCCACAGAGCCATGCAGCCTGCTaGTGTCATCACTGGTCACCC +
Preference number: 2 (lower is better)
Translates to: DVIFTSGLQHIFSSQLPQSHAAC*CHHWSP
Trigger: GGGTGACCAGTGATGACACCAGCAGGCTGCATGGCT...CTGTGGCAACTGGGAACTGAAGATGTGCTGGAGCCCAGATGTGAAGATTACATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR CCA 90 bp GGGGAGGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACTGCTGGTGTCATCACTaGTCACCCACAGCAGCTGTG +
Preference number: 2 (lower is better)
Translates to: GEDGWSVCQHLGTFYNSDCWCHH*SPTAAV
Trigger: CACAGCTGCTGTGGGTGACCAGTGATGACACCAGCA...GTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCCTCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR CCA 90 bp CTCAGGGAAGACAGGTGGAATCACAACACAGATGTAATCTTCACATCTGGGCTCAGCCATGCAGCCTGCTaGTGTCATCACTGGTCACCC +
Preference number: 2 (lower is better)
Translates to: LREDRWNHNTDVIFTSGLSHAAC*CHHWSP
Trigger: GGGTGACCAGTGATGACACCAGCAGGCTGCATGGCT...GAGCCCAGATGTGAAGATTACATCTGTGTTGTGATTCCACCTGTCTTCCCTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR CCA 90 bp CCACAACGGGACCACAGAGCCTGCCACCACATCAAAGTTCCAACGTGGCAGATGCTCAGGGAAGACAGGTaGAATCACAACACAGATGTA +
Preference number: 2 (lower is better)
Translates to: PQRDHRACHHIKVPTWQMLREDR*NHNTDV
Trigger: TACATCTGTGTTGTGATTCCACCTGTCTTCCCTGAG...CATCTGCCACGTTGGAACTTTGATGTGGTGGCAGGCTCTGTGGTCCCGTTGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR TCA 90 bp AGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTGCGGTCTGGCCTCAGCACTAACGCCCTGCAAGACTaGACATTTTCAAAAAGTATT +
Preference number: 2 (lower is better)
Translates to: SITAKLPGPQCLRSGLSTNALQD*TFSKSI
Trigger: AATACTTTTTGAAAATGTTCAGTCTTGCAGGGCGTT...AGTGCTGAGGCCAGACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR GCA 90 bp GATGTAATCTTCACATCTGGGCTCCAGCACATCTTCAGTTCCCAGTTGCCACAGCATTGCAGAAAGCCATaGAGCCTGCTGGTGTCATCA +
Preference number: 2 (lower is better)
Translates to: DVIFTSGLQHIFSSQLPQHCRKP*SLLVSS
Trigger: TGATGACACCAGCAGGCTGCATGGCTTTCTGCAATG...CTGTGGCAACTGGGAACTGAAGATGTGCTGGAGCCCAGATGTGAAGATTACATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR CCA 90 bp TTTACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATCCAGTGCCTGCGGTCTaGCCTCAGCACTGGCCAGAG +
Preference number: 2 (lower is better)
Translates to: FTIQTQVHKVENSLPCQNPVPAV*PQHWPE
Trigger: CTCTGGCCAGTGCTGAGGCCAGACCGCAGGCACTGG...ATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR TCA 90 bp GGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACCCAGGAGCAATCCAGAATACTaGGCTGCAGAACTCAGGGAA +
Preference number: 2 (lower is better)
Translates to: GWLECVPAFGHFLQFRPRSNPEY*AAELRE
Trigger: TTCCCTGAGTTCTGCAGCTCAGTATTCTGGATTGCT...CCTGGGTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR CCA 90 bp GAAAACTCTCTCCCATGTCAGAATACCAATAGAATTCAGCCACAAAGTAGCCACGTCTGGCCTCAGCACTaGCCAGAGCCTTCTTTCTCC +
Preference number: 2 (lower is better)
Translates to: ENSLPCQNTNRIQPQSSHVWPQH*PEPSFS
Trigger: GGAGAAAGAAGGCTCTGGCCAGTGCTGAGGCCAGAC...GTGGCTACTTTGTGGCTGAATTCTATTGGTATTCTGACATGGGAGAGAGTTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR GCA 90 bp GGGAACATGGATGACGACACAAAGCTGTTTCTCCTAGAAACACACGAACAAATAGGGGTGGATGGGAGCTaGATGGAAGGGACCCAATTT +
Preference number: 2 (lower is better)
Translates to: GNMDDDTKLFLLETHEQIGVDGS*MEGTQF
Trigger: AAATTGGGTCCCTTCCATGCAGCTCCCATCCACCCC...TATTTGTTCGTGTGTTTCTAGGAGAAACAGCTTTGTGTCGTCATCCATGTTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR GCA 90 bp GGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACCCAGGCAGCTAGGAACGCCCTaGAAGACTGAACATTTTCAA +
Preference number: 2 (lower is better)
Translates to: GWLECVPAFGHFLQFRPRQLGTP*KTEHFQ
Trigger: TTGAAAATGTTCAGTCTTGCAGGGCGTTCCTAGCTG...CCTGGGTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR GCA 90 bp ACCAAGCCATCTCATGGCCTCACTACTCACCCATACACACATCACAAACAGGACCAGCTAGGAACGCCCTaGAAGACTGAACATTTTCAA +
Preference number: 2 (lower is better)
Translates to: TKPSHGLTTHPYTHHKQDQLGTP*KTEHFQ
Trigger: TTGAAAATGTTCAGTCTTGCAGGGCGTTCCTAGCTG...GTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCCATGAGATGGCTTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR GCA 90 bp TTTACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATAGCTGTGGGAGGGTTTaGCCTCACTGCTTCCAGGGC +
Preference number: 2 (lower is better)
Translates to: FTIQTQVHKVENSLPCQNSCGRV*PHCFQG
Trigger: GCCCTGGAAGCAGTGAGGGCAAACCCTCCCACAGCT...ATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR TCA 90 bp GGCCTCACTACTCACCCATACACACATCACAAACAGGACAGTCAAAACGGATATTGCGATCTCCAGGCCTaGATATCTTCACAAGCAAAG +
Preference number: 2 (lower is better)
Translates to: GLTTHPYTHHKQDSQNGYCDLQA*ISSQAK
Trigger: CTTTGCTTGTGAAGATATTCAGGCCTGGAGATCGCA...ATATCCGTTTTGACTGTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR CCA 90 bp GGGAACATGGATGACGACACAAAGCTGTTTCTCCTAGAAACACACGAACAAATACCAGCTACTGGATACTaGATGATCTGGGGTCAGCTG +
Preference number: 2 (lower is better)
Translates to: GNMDDDTKLFLLETHEQIPATGY*MIWGQL
Trigger: CAGCTGACCCCAGATCATCCAGTATCCAGTAGCTGG...TATTTGTTCGTGTGTTTCTAGGAGAAACAGCTTTGTGTCGTCATCCATGTTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR GCA 90 bp GAAAACTCTCTCCCATGTCAGAATACCAATAGAATTCAGCCACAAAGTAGCCACACAGACAGGCATGCATaGACACACATCAGGCAAGAC +
Preference number: 2 (lower is better)
Translates to: ENSLPCQNTNRIQPQSSHTDRHA*THIRQD
Trigger: GTCTTGCCTGATGTGTGTGCATGCATGCCTGTCTGT...GTGGCTACTTTGTGGCTGAATTCTATTGGTATTCTGACATGGGAGAGAGTTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR CCA 90 bp ACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATACCGGATACTGGATGATCTaGGGTCAGCTGAGCTACAGA +
Preference number: 2 (lower is better)
Translates to: TIQTQVHKVENSLPCQNTGYWMI*GQLSYR
Trigger: TCTGTAGCTCAGCTGACCCCAGATCATCCAGTATCC...GGTATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR GCA 90 bp GATGTAATCTTCACATCTGGGCTCCAGCACATCTTCAGTTCCCAGTTGCCACAGAAGGGACCCAATTTTTaGTCTTTATCTGTCATGATC +
Preference number: 2 (lower is better)
Translates to: DVIFTSGLQHIFSSQLPQKGPNF*SLSVMI
Trigger: GATCATGACAGATAAAGAGCAAAAATTGGGTCCCTT...CTGTGGCAACTGGGAACTGAAGATGTGCTGGAGCCCAGATGTGAAGATTACATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR TCA 90 bp TATGTGGGATCACCTTTTAGAGCCATGATTAAAAGCAAATCTGTAGCCCTTATACTACCACACATGCACTaGGACCCAGAACTGCAGCTA +
Preference number: 2 (lower is better)
Translates to: YVGSPFRAMIKSKSVALILPHMH*DPELQL
Trigger: TAGCTGCAGTTCTGGGTCTCAGTGCATGTGTGGTAG...TATAAGGGCTACAGATTTGCTTTTAATCATGGCTCTAAAAGGTGATCCCACATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR CCA 90 bp TTTACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATGGATACTGGATGATCTaGGGTCAGCTGAGCTACAGA +
Preference number: 2 (lower is better)
Translates to: FTIQTQVHKVENSLPCQNGYWMI*GQLSYR
Trigger: TCTGTAGCTCAGCTGACCCCAGATCATCCAGTATCC...ATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR TCA 90 bp TGCCCCAGTGGTATCCTGACATACCTCAACCACATTAGCACTTCCAAGGTAAATAACGCCCTGCAAGACTaGACATTTTCAAAAAGTATT +
Preference number: 2 (lower is better)
Translates to: CPSGILTYLNHISTSKVNNALQD*TFSKSI
Trigger: AATACTTTTTGAAAATGTTCAGTCTTGCAGGGCGTT...ATTTACCTTGGAAGTGCTAATGTGGTTGAGGTATGTCAGGATACCACTGGGGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR TCA 90 bp TTTACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATAGCAATCCAGAATACTaGGCTGCAGAACTCAGGGAA +
Preference number: 2 (lower is better)
Translates to: FTIQTQVHKVENSLPCQNSNPEY*AAELRE
Trigger: TTCCCTGAGTTCTGCAGCTCAGTATTCTGGATTGCT...ATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR GCA 90 bp TTTACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATAAGGGACCCAATTTTTaGTCTTTATCTGTCATGATC +
Preference number: 2 (lower is better)
Translates to: FTIQTQVHKVENSLPCQNKGPNF*SLSVMI
Trigger: GATCATGACAGATAAAGAGCAAAAATTGGGTCCCTT...ATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGTAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR GCA 72 bp GTCACCCACAGCAGCTGTGGGAGGGTTTGCCCTCACTaGTTCCAGGGCTGGGGCTCACCATCACAGGTGGCT +
Preference number: 3 (lower is better)
Translates to: VTHSSCGRVCPH*FQGWGSPSQVA
Trigger: AGCCACCTGTGATGGTGAGCCCCAGCCCTGGAAGCAGTGAGGGCAAACCCTCCCACAGCTGCTGTGGGTGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR GCA 72 bp CAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTaGCTGCGGTCTGGCCTCAGCACTGGCCAGAGCCTT +
Preference number: 3 (lower is better)
Translates to: QGSITAKLPGPQ*LRSGLSTGQSL
Trigger: AAGGCTCTGGCCAGTGCTGAGGCCAGACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR GCA 72 bp GTTGCCACAGGCACCTCAGCACCAAGGCAGTATCACTaGCAAACTCCCAGGACCCCAGTGCCTGCGGTCTGG +
Preference number: 3 (lower is better)
Translates to: VATGTSAPRQYH*QTPRTPVPAVW
Trigger: CCAGACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGAGGTGCCTGTGGCAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR GCA 72 bp TCATCACTGGTCACCCACAGCAGCTGTGGGAGGGTTTaGCCTCACTGCTTCCAGGGCTGGGGCTCACCATCA +
Preference number: 3 (lower is better)
Translates to: SSLVTHSSCGRV*PHCFQGWGSPS
Trigger: TGATGGTGAGCCCCAGCCCTGGAAGCAGTGAGGGCAAACCCTCCCACAGCTGCTGTGGGTGACCAGTGATGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR GCA 72 bp GCAGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTaGGGTCTGGCCTCAGCACTGGCCAGAGCCTTCTTT +
Preference number: 3 (lower is better)
Translates to: AVSLPNSQDPSA*GLASALARAFF
Trigger: AAAGAAGGCTCTGGCCAGTGCTGAGGCCAGACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR CCA 72 bp ATTGCAGAAAGCCATGCAGCCTGCTGGTGTCATCACTaGTCACCCACAGCAGCTGTGGGAGGGTTTGCCCTC +
Preference number: 3 (lower is better)
Translates to: IAESHAACWCHH*SPTAAVGGFAL
Trigger: GAGGGCAAACCCTCCCACAGCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR CCA 72 bp GGTAGAGGCAGCATTGCAGAAAGCCATGCAGCCTGCTaGTGTCATCACTGGTCACCCACAGCAGCTGTGGGA +
Preference number: 3 (lower is better)
Translates to: GRGSIAESHAAC*CHHWSPTAAVG
Trigger: TCCCACAGCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATGCTGCCTCTACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR CCA 72 bp GTCTGGCCTCAGCACTGGCCAGAGCCTTCTTTCTCCTaGGTAGAGGCAGCATTGCAGAAAGCCATGCAGCCT +
Preference number: 3 (lower is better)
Translates to: VWPQHWPEPSFS*VEAALQKAMQP
Trigger: AGGCTGCATGGCTTTCTGCAATGCTGCCTCTACCCAGGAGAAAGAAGGCTCTGGCCAGTGCTGAGGCCAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR CCA 72 bp GACCACAGAGCCTGCCACCACATCAAAGTTCCAACGTaGCAGATGGGGAGGATGGTTGGAGTGTGTGCCAGC +
Preference number: 3 (lower is better)
Translates to: DHRACHHIKVPT*QMGRMVGVCAS
Trigger: GCTGGCACACACTCCAACCATCCTCCCCATCTGCCACGTTGGAACTTTGATGTGGTGGCAGGCTCTGTGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR CAA 90 bp ACAGGCACCTCAGCACCAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTGAGGTGGCTAAGGTGTTaGGAGACCAAGCCATCTCAT +
Preference number: 3 (lower is better)
Translates to: TGTSAPRQYHCQTPRTPVRWLRC*ETKPSH
Trigger: ATGAGATGGCTTGGTCTCCAAACACCTTAGCCACCT...CACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGAGGTGCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR GCA 72 bp TCACATCTGGGCTCCAGCACATCTTCAGTTCCCAGTTaGCACAGGCACCTCAGCACCAAGGCAGTATCACTG +
Preference number: 3 (lower is better)
Translates to: SHLGSSTSSVPS*HRHLSTKAVSL
Trigger: CAGTGATACTGCCTTGGTGCTGAGGTGCCTGTGGCAACTGGGAACTGAAGATGTGCTGGAGCCCAGATGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR CAA 90 bp TCAGCACCAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTGCGGTCGAAGGGACCCAATTTTaGCTCTTTATCTGTCATGAT +
Preference number: 3 (lower is better)
Translates to: SAPRQYHCQTPRTPVPAVEGTQF*LFICHD
Trigger: ATCATGACAGATAAAGAGCAAAAATTGGGTCCCTTC...GACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR CAA 90 bp GGGGAGGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACTGGGTAGAGGCAGCATaGCAGAAAGCCATGCAGCCT +
Preference number: 3 (lower is better)
Translates to: GEDGWSVCQHLGTFYNSDWVEAA*QKAMQP
Trigger: AGGCTGCATGGCTTTCTGCAATGCTGCCTCTACCCA...GTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCCTCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR GCA 72 bp GGGTGGATGGGAGCTGCATGGAAGGGACCCAATTTTTaGTCTTTATCTGTCATGATCCCCTACTTCCACCCT +
Preference number: 3 (lower is better)
Translates to: GWMGAAWKGPNF*SLSVMIPYFHP
Trigger: AGGGTGGAAGTAGGGGATCATGACAGATAAAGAGCAAAAATTGGGTCCCTTCCATGCAGCTCCCATCCACCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR GCA 72 bp TCCAACGTGGCAGATGGGGAGGATGGTTGGAGTGTGTaGCAGCATTTGGGCACTTTTTACAATTCAGACCCA +
Preference number: 3 (lower is better)
Translates to: SNVADGEDGWSV*QHLGTFYNSDP
Trigger: TGGGTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCCTCCCCATCTGCCACGTTGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR GCA 72 bp CACAAAGTAGCCACACAGCAATCCAGAATACTGAGCTaGAGAACTCAGGGAAGACAGGTGGAATCACAACAC +
Preference number: 3 (lower is better)
Translates to: HKVATQQSRILS*RTQGRQVESQH
Trigger: GTGTTGTGATTCCACCTGTCTTCCCTGAGTTCTGCAGCTCAGTATTCTGGATTGCTGTGTGGCTACTTTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR CCA 72 bp CAGGTGGAATCACAACACAGATGTAATCTTCACATCTaGGCTCCAGCACATCTTCAGTTCCCAGTTGCCACA +
Preference number: 3 (lower is better)
Translates to: QVESQHRCNLHI*APAHLQFPVAT
Trigger: TGTGGCAACTGGGAACTGAAGATGTGCTGGAGCCCAGATGTGAAGATTACATCTGTGTTGTGATTCCACCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR CCA 72 bp CATCAAAGTTCCAACGTGGCAGATGGGGAGGATGGTTaGAGTGTGTGCCAGCATTTGGGCACTTTTTACAAT +
Preference number: 3 (lower is better)
Translates to: HQSSNVADGEDG*SVCQHLGTFYN
Trigger: ATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCCTCCCCATCTGCCACGTTGGAACTTTGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR CAA 90 bp ACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATACCTTCCAAGGTAAATGGTaGCTGCGATCTCCAGGCCTG +
Preference number: 3 (lower is better)
Translates to: TIQTQVHKVENSLPCQNTFQGKW*LRSPGL
Trigger: CAGGCCTGGAGATCGCAGCAACCATTTACCTTGGAA...GGTATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR CAA 90 bp GGGAACATGGATGACGACACAAAGCTGTTTCTCCTAGAAACACACGAACAAATATTCCAAGGTAAATGGTaGCTGCGATCTCCAGGCCTG +
Preference number: 3 (lower is better)
Translates to: GNMDDDTKLFLLETHEQIFQGKW*LRSPGL
Trigger: CAGGCCTGGAGATCGCAGCAACCATTTACCTTGGAA...TATTTGTTCGTGTGTTTCTAGGAGAAACAGCTTTGTGTCGTCATCCATGTTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR TCA 72 bp CATGGAAGGGACCCAATTTTTGCTCTTTATCTGTCATaGTCCCCTACTTCCACCCTATGCTGCCTAACACAC +
Preference number: 3 (lower is better)
Translates to: HGRDPIFALYLS*SPTSTLCCLTH
Trigger: GTGTGTTAGGCAGCATAGGGTGGAAGTAGGGGATCATGACAGATAAAGAGCAAAAATTGGGTCCCTTCCATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR CCA 72 bp AAGGGATTTATAAGGATGTTAGAATCCCCCAGCTACTaGATACTGGATGATCTGGGGTCAGCTGAGCTACAG +
Preference number: 3 (lower is better)
Translates to: KGFIRMLESPSY*ILDDLGSAELQ
Trigger: CTGTAGCTCAGCTGACCCCAGATCATCCAGTATCCAGTAGCTGGGGGATTCTAACATCCTTATAAATCCCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR TCA 72 bp CTGTTGTGCTTTGAAATGTTTTCTAATTACAGGTCATaGCTACAGAATCCAGGGACACCCTTGCCCCAGTGG +
Preference number: 3 (lower is better)
Translates to: LLCFEMFSNYRS*LQNPGTPLPQW
Trigger: CCACTGGGGCAAGGGTGTCCCTGGATTCTGTAGTCATGACCTGTAATTAGAAAACATTTCAAAGCACAACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR-3UTR CAA 90 bp CATACACACATCACAAACAGGACAGTCAAAACGGATATGTGGGATCACCTTTTAGAAGGGACCCAATTTTaGCTCTTTATCTGTCATGAT +
Preference number: 3 (lower is better)
Translates to: HTHITNRTVKTDMWDHLLEGTQF*LFICHD
Trigger: ATCATGACAGATAAAGAGCAAAAATTGGGTCCCTTC...TAAAAGGTGATCCCACATATCCGTTTTGACTGTCCTGTTTGTGATGTGTGTATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR GCA 72 bp TACATATTTATATTTATATTAGGGGTGGATGGGAGCTaGATGGAAGGGACCCAATTTTTGCTCTTTATCTGT +
Preference number: 3 (lower is better)
Translates to: YIFIFILGVDGS*MEGTQFLLFIC
Trigger: ACAGATAAAGAGCAAAAATTGGGTCCCTTCCATGCAGCTCCCATCCACCCCTAATATAAATATAAATATGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR TCA 90 bp CATTGCAGAAAGCCATGCAGCCTGCTGGTGTCATCACTGGTCACCCACAGCAGCGGCCCAGGGCAGTGGTaGGGCGGGCGGTCTGCTCAG +
Preference number: 4 (lower is better)
Translates to: HCRKPCSLLVSSLVTHSSGPGQW*GGRSAQ
Trigger: CTGAGCAGACCGCCCGCCTCACCACTGCCCTGGGCC...GCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp TCAGCACCAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTGCGGTCGAGAGGGGATCAGGGTaGAGGACCCCCTGGGTGGTG +
Preference number: 4 (lower is better)
Translates to: SAPRQYHCQTPRTPVPAVERGSG*RTPWVV
Trigger: CACCACCCAGGGGGTCCTCCACCCTGATCCCCTCTC...GACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CCTGCTGGTGTCATCACTGGTCACCCACAGCAGCTGTGGGAGGGTTTGCCCTCATTGGGGATGCCAGGCTaGCCACTGGGGCCAGGCGAA +
Preference number: 4 (lower is better)
Translates to: PAGVITGHPQQLWEGLPSLGMPG*PLGPGE
Trigger: TTCGCCTGGCCCCAGTGGCCAGCCTGGCATCCCCAA...TGAGGGCAAACCCTCCCACAGCTGCTGTGGGTGACCAGTGATGACACCAGCAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CCACAACGGGACCACAGAGCCTGCCACCACATCAAAGTTCCAACGTGGCAGATGGGCCTGAGGAGAGGCTaGGTGGGGCCCCAGCCTGTG +
Preference number: 4 (lower is better)
Translates to: PQRDHRACHHIKVPTWQMGLRRG*VGPQPV
Trigger: CACAGGCTGGGGCCCCACCCAGCCTCTCCTCAGGCC...CATCTGCCACGTTGGAACTTTGATGTGGTGGCAGGCTCTGTGGTCCCGTTGTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR TCA 90 bp AGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTGCGGTCTGGCCTCAGCACTGGGGAGGTGGAGCCCTaGTCTTCACTGGCTCCCACA +
Preference number: 4 (lower is better)
Translates to: SITAKLPGPQCLRSGLSTGEVEP*SSLAPT
Trigger: TGTGGGAGCCAGTGAAGATCAGGGCTCCACCTCCCC...AGTGCTGAGGCCAGACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp CCACAACGGGACCACAGAGCCTGCCACCACATCAAAGTTCCAACGTGGCAGATGCCCACCCCTGCTCTGTaGAGCCTCCGGTCTGTGGGC +
Preference number: 4 (lower is better)
Translates to: PQRDHRACHHIKVPTWQMPTPAL*SLRSVG
Trigger: GCCCACAGACCGGAGGCTGCACAGAGCAGGGGTGGG...CATCTGCCACGTTGGAACTTTGATGTGGTGGCAGGCTCTGTGGTCCCGTTGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp AGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTGCGGTCTGGCCTCAGCACTCCTCAGATGTGGGGCTaGAGGCTGAAGGAGGGTGGC +
Preference number: 4 (lower is better)
Translates to: SITAKLPGPQCLRSGLSTPQMWG*RLKEGG
Trigger: GCCACCCTCCTTCAGCCTCCAGCCCCACATCTGAGG...AGTGCTGAGGCCAGACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp TTAGGACCACAACGGGACCACAGAGCCTGCCACCACATCAAAGTTCCAACGTGGGGCCTGAGGAGAGGCTaGGTGGGGCCCCAGCCTGTG +
Preference number: 4 (lower is better)
Translates to: LGPQRDHRACHHIKVPTWGLRRG*VGPQPV
Trigger: CACAGGCTGGGGCCCCACCCAGCCTCTCCTCAGGCC...CCACGTTGGAACTTTGATGTGGTGGCAGGCTCTGTGGTCCCGTTGTGGTCCTAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR CAA 72 bp GTCATCACTGGTCACCCACAGCAGCTGTGGGAGGGTTaGCCCTCACTGCTTCCAGGGCTGGGGCTCACCATC +
Preference number: 4 (lower is better)
Translates to: VITGHPQQLWEG*PSLLPGLGLTI
Trigger: GATGGTGAGCCCCAGCCCTGGAAGCAGTGAGGGCAAACCCTCCCACAGCTGCTGTGGGTGACCAGTGATGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR TCA 90 bp GCATGCATGCACACACATCAGGCAAGACACGGACACTGCTTCCCACAGCCATGGGCCGGGAGTGAGCTGTaGGGGACACGGGATGGGCAA +
Preference number: 4 (lower is better)
Translates to: ACMHTHQARHGHCFPQPWAGSEL*GTRDGQ
Trigger: TTGCCCATCCCGTGTCCCTCACAGCTCACTCCCGGC...CCATGGCTGTGGGAAGCAGTGTCCGTGTCTTGCCTGATGTGTGTGCATGCATGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR TCA 90 bp ACAGGCACCTCAGCACCAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTGGGGGAGGTGGAGCCCTaGTCTTCACTGGCTCCCACA +
Preference number: 4 (lower is better)
Translates to: TGTSAPRQYHCQTPRTPVGEVEP*SSLAPT
Trigger: TGTGGGAGCCAGTGAAGATCAGGGCTCCACCTCCCC...CACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGAGGTGCCTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR TCA 90 bp GCATGCATGCACACACATCAGGCAAGACACGGACACTGCTTCCCACAGCCATGGTGTCTCAGGGTCCCCTaGGCCTTCCGGCTTGGCCAG +
Preference number: 4 (lower is better)
Translates to: ACMHTHQARHGHCFPQPWCLRVP*AFRLGQ
Trigger: CTGGCCAAGCCGGAAGGCTCAGGGGACCCTGAGACA...CCATGGCTGTGGGAAGCAGTGTCCGTGTCTTGCCTGATGTGTGTGCATGCATGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TTAGGACCACAACGGGACCACAGAGCCTGCCACCACATCAAAGTTCCAACGTGGGACGCTCATGGCCCATaGCCAGGGCAGCCTCGTCCC +
Preference number: 4 (lower is better)
Translates to: LGPQRDHRACHHIKVPTWDAHGP*PGQPRP
Trigger: GGGACGAGGCTGCCCTGGGCATGGGCCATGAGCGTC...CCACGTTGGAACTTTGATGTGGTGGCAGGCTCTGTGGTCCCGTTGTGGTCCTAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TCAGCACCAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTGCGGTCGTGCACACTCCAGGCTaGAACCCCAGGGTTGGGTCT +
Preference number: 4 (lower is better)
Translates to: SAPRQYHCQTPRTPVPAVVHTPG*NPRVGS
Trigger: AGACCCAACCCTGGGGTTGCAGCCTGGAGTGTGCAC...GACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GCCTTCTTTCTCCTGGGTAGAGGCAGCATTGCAGAAAGCCATGCAGCCTGCTGGGGAGGCAGAAGCTCCTaGGCTGCCCAAAGGCCTCCC +
Preference number: 4 (lower is better)
Translates to: AFFLLGRGSIAESHAACWGGRSS*AAQRPP
Trigger: GGGAGGCCTTTGGGCAGCCCAGGAGCTTCTGCCTCC...CCAGCAGGCTGCATGGCTTTCTGCAATGCTGCCTCTACCCAGGAGAAAGAAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GCATGCATGCACACACATCAGGCAAGACACGGACACTGCTTCCCACAGCCATGGGGAGGCAGAAGCTCCTaGGCTGCCCAAAGGCCTCCC +
Preference number: 4 (lower is better)
Translates to: ACMHTHQARHGHCFPQPWGGRSS*AAQRPP
Trigger: GGGAGGCCTTTGGGCAGCCCAGGAGCTTCTGCCTCC...CCATGGCTGTGGGAAGCAGTGTCCGTGTCTTGCCTGATGTGTGTGCATGCATGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CATTGCAGAAAGCCATGCAGCCTGCTGGTGTCATCACTGGTCACCCACAGCAGCAAGGCAGGCCCTTCCTaGGGCCTGAGGAGAGGCTGG +
Preference number: 4 (lower is better)
Translates to: HCRKPCSLLVSSLVTHSSKAGPS*GLRRGW
Trigger: CCAGCCTCTCCTCAGGCCCCAGGAAGGGCCTGCCTT...GCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR TCA 90 bp ACAGGCACCTCAGCACCAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTGGTTGGCCTCTTTGGGTaGGACGCTCATGGCCCATGC +
Preference number: 4 (lower is better)
Translates to: TGTSAPRQYHCQTPRTPVVGLFG*DAHGPC
Trigger: GCATGGGCCATGAGCGTCTCACCCAAAGAGGCCAAC...CACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGAGGTGCCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR TCA 90 bp CCACAACGGGACCACAGAGCCTGCCACCACATCAAAGTTCCAACGTGGCAGATGCCGTCATGGCCAGGCTaGGCTTTCCCCTGGATGTGG +
Preference number: 4 (lower is better)
Translates to: PQRDHRACHHIKVPTWQMPSWPG*AFPWMW
Trigger: CCACATCCAGGGGAAAGCTCAGCCTGGCCATGACGG...CATCTGCCACGTTGGAACTTTGATGTGGTGGCAGGCTCTGTGGTCCCGTTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp CATTGCAGAAAGCCATGCAGCCTGCTGGTGTCATCACTGGTCACCCACAGCAGCAGTCCTCGCTGCTCATaGTCGCTGGGGAGGTGGAGC +
Preference number: 4 (lower is better)
Translates to: HCRKPCSLLVSSLVTHSSSPRCS*SLGRWS
Trigger: GCTCCACCTCCCCAGCGAGCATGAGCAGCGAGGACT...GCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GCCTTCTTTCTCCTGGGTAGAGGCAGCATTGCAGAAAGCCATGCAGCCTGCTGGTGCATACAGCAGGCTTaGGGGCCAGCCTCGTGTCCC +
Preference number: 4 (lower is better)
Translates to: AFFLLGRGSIAESHAACWCIQQA*GPASCP
Trigger: GGGACACGAGGCTGGCCCCCAAGCCTGCTGTATGCA...CCAGCAGGCTGCATGGCTTTCTGCAATGCTGCCTCTACCCAGGAGAAAGAAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CATTGCAGAAAGCCATGCAGCCTGCTGGTGTCATCACTGGTCACCCACAGCAGCGGCAAGGTGCTGCTGTaGGCAGGCTCGGGGATAGAG +
Preference number: 4 (lower is better)
Translates to: HCRKPCSLLVSSLVTHSSGKVLL*AGSGIE
Trigger: CTCTATCCCCGAGCCTGCCCACAGCAGCACCTTGCC...GCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp TCAGCACCAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTGCGGTCCCATCAGAGCTGCCCTaGCTGAGGTTTCTCGGTTCC +
Preference number: 4 (lower is better)
Translates to: SAPRQYHCQTPRTPVPAVPSELP*LRFLGS
Trigger: GGAACCGAGAAACCTCAGCCAGGGCAGCTCTGATGG...GACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CCTGCTGGTGTCATCACTGGTCACCCACAGCAGCTGTGGGAGGGTTTGCCCTCAGAGGTGGGTCCCCACTaGCCTCCTTCCTGGTTTTCT +
Preference number: 4 (lower is better)
Translates to: PAGVITGHPQQLWEGLPSEVGPH*PPSWFS
Trigger: AGAAAACCAGGAAGGAGGCCAGTGGGGACCCACCTC...TGAGGGCAAACCCTCCCACAGCTGCTGTGGGTGACCAGTGATGACACCAGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CCTGCTGGTGTCATCACTGGTCACCCACAGCAGCTGTGGGAGGGTTTGCCCTCAAGAAGAGTGGGTTCCTaGATGGAGGCCTGTCGCTGC +
Preference number: 4 (lower is better)
Translates to: PAGVITGHPQQLWEGLPSRRVGS*MEACRC
Trigger: GCAGCGACAGGCCTCCATCCAGGAACCCACTCTTCT...TGAGGGCAAACCCTCCCACAGCTGCTGTGGGTGACCAGTGATGACACCAGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp TCAGCACCAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTGCGGTCTGTCCCCTCTGCACTTaGGCAGACAGCTCCGTAGTG +
Preference number: 4 (lower is better)
Translates to: SAPRQYHCQTPRTPVPAVCPLCT*ADSSVV
Trigger: CACTACGGAGCTGTCTGCCCAAGTGCAGAGGGGACA...GACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp ACAGGCACCTCAGCACCAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTGTGTCCGAGCTCTCTCTaGGCCTCTCCTTCCTTCGGC +
Preference number: 4 (lower is better)
Translates to: TGTSAPRQYHCQTPRTPVCPSSL*ASPSFG
Trigger: GCCGAAGGAAGGAGAGGCCCAGAGAGAGCTCGGACA...CACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGAGGTGCCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GCCTTCTTTCTCCTGGGTAGAGGCAGCATTGCAGAAAGCCATGCAGCCTGCTGGAGGACGAGGTCAGCCTaGGACCCAGGGTTGGGGGTT +
Preference number: 4 (lower is better)
Translates to: AFFLLGRGSIAESHAACWRTRSA*DPGLGV
Trigger: AACCCCCAACCCTGGGTCCCAGGCTGACCTCGTCCT...CCAGCAGGCTGCATGGCTTTCTGCAATGCTGCCTCTACCCAGGAGAAAGAAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR TCA 90 bp TCATGGCCTCACTACTCACCCATACACACATCACAAACAGGACAGTCAAAACGGGGCCCAGGGCAGTGGTaGGGCGGGCGGTCTGCTCAG +
Preference number: 4 (lower is better)
Translates to: SWPHYSPIHTSQTGQSKRGPGQW*GGRSAQ
Trigger: CTGAGCAGACCGCCCGCCTCACCACTGCCCTGGGCC...CCGTTTTGACTGTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCCATGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp CCACAACGGGACCACAGAGCCTGCCACCACATCAAAGTTCCAACGTGGCAGATGCAGAAGCTCCTGGGCTaGCCAAAGGCCTCCCATCTG +
Preference number: 4 (lower is better)
Translates to: PQRDHRACHHIKVPTWQMQKLLG*PKASHL
Trigger: CAGATGGGAGGCCTTTGGGCAGCCCAGGAGCTTCTG...CATCTGCCACGTTGGAACTTTGATGTGGTGGCAGGCTCTGTGGTCCCGTTGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp AGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTGCGGTCTGGCCTCAGCACTCCAGCTCCAAGGGACTaGGTCTCCCAGCTTCATCTT +
Preference number: 4 (lower is better)
Translates to: SITAKLPGPQCLRSGLSTPAPRD*VSQLHL
Trigger: AAGATGAAGCTGGGAGACGCAGTCCCTTGGAGCTGG...AGTGCTGAGGCCAGACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp CCACAACGGGACCACAGAGCCTGCCACCACATCAAAGTTCCAACGTGGCAGATGCGTCCTCGCCCCCTGTaGCACCCATCTTTGCCTTCT +
Preference number: 4 (lower is better)
Translates to: PQRDHRACHHIKVPTWQMRPRPL*HPSLPS
Trigger: AGAAGGCAAAGATGGGTGGCACAGGGGGCGAGGACG...CATCTGCCACGTTGGAACTTTGATGTGGTGGCAGGCTCTGTGGTCCCGTTGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp AGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTGCGGTCTGGCCTCAGCACTCACACTTTCTGCCGTTaGAGTCTGGCTTCCCTGTGG +
Preference number: 4 (lower is better)
Translates to: SITAKLPGPQCLRSGLSTHTFCR*SLASLW
Trigger: CCACAGGGAAGCCAGACTGCAACGGCAGAAAGTGTG...AGTGCTGAGGCCAGACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp TCAGCACCAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTGCGGTCTGGGGGCTGGCAGAATaGTCTTGGAGATGTCCAGGA +
Preference number: 4 (lower is better)
Translates to: SAPRQYHCQTPRTPVPAVWGLAE*SWRCPG
Trigger: TCCTGGACATCTCCAAGACCATTCTGCCAGCCCCCA...GACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GCATGCATGCACACACATCAGGCAAGACACGGACACTGCTTCCCACAGCCATGGTGCCACACTGCTTCCTaGGCTTCGTCCTGGGCCATC +
Preference number: 4 (lower is better)
Translates to: ACMHTHQARHGHCFPQPWCHTAS*ASSWAI
Trigger: GATGGCCCAGGACGAAGCCCAGGAAGCAGTGTGGCA...CCATGGCTGTGGGAAGCAGTGTCCGTGTCTTGCCTGATGTGTGTGCATGCATGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GCCTTCTTTCTCCTGGGTAGAGGCAGCATTGCAGAAAGCCATGCAGCCTGCTGGCCTCGGCACCCACTTTaGCACAACTGGGCAGCTGAC +
Preference number: 4 (lower is better)
Translates to: AFFLLGRGSIAESHAACWPRHPL*HNWAAD
Trigger: GTCAGCTGCCCAGTTGTGCCAAAGTGGGTGCCGAGG...CCAGCAGGCTGCATGGCTTTCTGCAATGCTGCCTCTACCCAGGAGAAAGAAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GCATGCATGCACACACATCAGGCAAGACACGGACACTGCTTCCCACAGCCATGGCCTCGGCACCCACTTTaGCACAACTGGGCAGCTGAC +
Preference number: 4 (lower is better)
Translates to: ACMHTHQARHGHCFPQPWPRHPL*HNWAAD
Trigger: GTCAGCTGCCCAGTTGTGCCAAAGTGGGTGCCGAGG...CCATGGCTGTGGGAAGCAGTGTCCGTGTCTTGCCTGATGTGTGTGCATGCATGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TTGCTGCGATCTCCAGGCCTGAATATCTTCACAAGCAAAGCGGTTCCAGCCTCTACGGGATGGGCAAGGTaGTGCTGTGGGCAGGCTCGG +
Preference number: 4 (lower is better)
Translates to: LLRSPGLNIFTSKAVPASTGWAR*CCGQAR
Trigger: CCGAGCCTGCCCACAGCAGCACCTTGCCCATCCCGT...AGAGGCTGGAACCGCTTTGCTTGTGAAGATATTCAGGCCTGGAGATCGCAGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp ATTACAGGTCATGACTACAGAATCCAGGGACACCCTTGCCCCAGTGGTATCCTGTCCTCACCCCACCCCTaGTCTGTGCAGCCTCCGGTC +
Preference number: 4 (lower is better)
Translates to: ITGHDYRIQGHPCPSGILSSPHP*SVQPPV
Trigger: GACCGGAGGCTGCACAGAGCAGGGGTGGGGTGAGGA...CAGGATACCACTGGGGCAAGGGTGTCCCTGGATTCTGTAGTCATGACCTGTAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp GATGTAATCTTCACATCTGGGCTCCAGCACATCTTCAGTTCCCAGTTGCCACAGTGCGCCTGGCAGGCATaGTCCTCCTCACCCCACCCC +
Preference number: 4 (lower is better)
Translates to: DVIFTSGLQHIFSSQLPQCAWQA*SSSPHP
Trigger: GGGGTGGGGTGAGGAGGAGCATGCCTGCCAGGCGCA...CTGTGGCAACTGGGAACTGAAGATGTGCTGGAGCCCAGATGTGAAGATTACATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TCAGCACCAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTGCGGTCCATCTTTGCCTTCTCTaGCACACTGCTTCCTGGGCT +
Preference number: 4 (lower is better)
Translates to: SAPRQYHCQTPRTPVPAVHLCLL*HTASWA
Trigger: AGCCCAGGAAGCAGTGTGGCAGAGAAGGCAAAGATG...GACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp CCTGCTGGTGTCATCACTGGTCACCCACAGCAGCTGTGGGAGGGTTTGCCCTCATGTGCCACCCATCTTTaGCTTCTCTGCCACACTGCT +
Preference number: 4 (lower is better)
Translates to: PAGVITGHPQQLWEGLPSCATHL*LLCHTA
Trigger: AGCAGTGTGGCAGAGAAGGCAAAGATGGGTGGCACA...TGAGGGCAAACCCTCCCACAGCTGCTGTGGGTGACCAGTGATGACACCAGCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp AGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTGCGGTCTGGCCTCAGCACTGTCATCACTGTCCACTaGACTGTCCTCAGATGTGGG +
Preference number: 4 (lower is better)
Translates to: SITAKLPGPQCLRSGLSTVITVH*TVLRCG
Trigger: CCCACATCTGAGGACAGTGCAGTGGACAGTGATGAC...AGTGCTGAGGCCAGACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TCAGCACCAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTGCGGTCGAGAATGCGGGAGCCTaGAGAGGTAAGCCTAGATTG +
Preference number: 4 (lower is better)
Translates to: SAPRQYHCQTPRTPVPAVENAGA*RGKPRL
Trigger: CAATCTAGGCTTACCTCTGCAGGCTCCCGCATTCTC...GACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp GCATGCATGCACACACATCAGGCAAGACACGGACACTGCTTCCCACAGCCATGGTGCTCACTGTGGCACTaGCCCCATCCTCCATGGAAG +
Preference number: 4 (lower is better)
Translates to: ACMHTHQARHGHCFPQPWCSLWH*PHPPWK
Trigger: CTTCCATGGAGGATGGGGGCAGTGCCACAGTGAGCA...CCATGGCTGTGGGAAGCAGTGTCCGTGTCTTGCCTGATGTGTGTGCATGCATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp TCAGCACCAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTGCGGTCAGCCCTGATCTTCACTaGCTCCCACAGGAACACTAC +
Preference number: 4 (lower is better)
Translates to: SAPRQYHCQTPRTPVPAVSPDLH*LPQEHY
Trigger: GTAGTGTTCCTGTGGGAGCCAGTGAAGATCAGGGCT...GACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GCCTTCTTTCTCCTGGGTAGAGGCAGCATTGCAGAAAGCCATGCAGCCTGCTGGTGCCGTCGTCACTGCTaGAGTCTGATGCCTGGTGCA +
Preference number: 4 (lower is better)
Translates to: AFFLLGRGSIAESHAACWCRRHC*SLMPGA
Trigger: TGCACCAGGCATCAGACTCCAGCAGTGACGACGGCA...CCAGCAGGCTGCATGGCTTTCTGCAATGCTGCCTCTACCCAGGAGAAAGAAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CATTGCAGAAAGCCATGCAGCCTGCTGGTGTCATCACTGGTCACCCACAGCAGCGAGGTGGGTCCCCACTaGCCTCCTTCCTGGTTTTCT +
Preference number: 4 (lower is better)
Translates to: HCRKPCSLLVSSLVTHSSEVGPH*PPSWFS
Trigger: AGAAAACCAGGAAGGAGGCCAGTGGGGACCCACCTC...GCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CATTGCAGAAAGCCATGCAGCCTGCTGGTGTCATCACTGGTCACCCACAGCAGCAATCCGTCAGGAGCCTaGAGAGGGGATCAGGGTGGA +
Preference number: 4 (lower is better)
Translates to: HCRKPCSLLVSSLVTHSSNPSGA*RGDQGG
Trigger: TCCACCCTGATCCCCTCTCCAGGCTCCTGACGGATT...GCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CCACAACGGGACCACAGAGCCTGCCACCACATCAAAGTTCCAACGTGGCAGATGGCTAGGCGTGAGGCCTaGCACACAGCTTCACTCTTG +
Preference number: 4 (lower is better)
Translates to: PQRDHRACHHIKVPTWQMARREA*HTASLL
Trigger: CAAGAGTGAAGCTGTGTGCCAGGCCTCACGCCTAGC...CATCTGCCACGTTGGAACTTTGATGTGGTGGCAGGCTCTGTGGTCCCGTTGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CATTGCAGAAAGCCATGCAGCCTGCTGGTGTCATCACTGGTCACCCACAGCAGCCAGAACGGGGAGGCATaGGTTGGGGACAGAAGAGTG +
Preference number: 4 (lower is better)
Translates to: HCRKPCSLLVSSLVTHSSQNGEA*VGDRRV
Trigger: CACTCTTCTGTCCCCAACCCATGCCTCCCCGTTCTG...GCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp TTAGGACCACAACGGGACCACAGAGCCTGCCACCACATCAAAGTTCCAACGTGGCCTACAGGGCATCTCTaGCTTGGCAGGTCCCCCTTG +
Preference number: 4 (lower is better)
Translates to: LGPQRDHRACHHIKVPTWPTGHL*LGRSPL
Trigger: CAAGGGGGACCTGCCAAGCCAGAGATGCCCTGTAGG...CCACGTTGGAACTTTGATGTGGTGGCAGGCTCTGTGGTCCCGTTGTGGTCCTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GCATGCATGCACACACATCAGGCAAGACACGGACACTGCTTCCCACAGCCATGGTCAGCACCCATGGGCTaGATAGCCTGCTCTGGTGTG +
Preference number: 4 (lower is better)
Translates to: ACMHTHQARHGHCFPQPWSAPMG*IACSGV
Trigger: CACACCAGAGCAGGCTATCCAGCCCATGGGTGCTGA...CCATGGCTGTGGGAAGCAGTGTCCGTGTCTTGCCTGATGTGTGTGCATGCATGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR TCA 90 bp TCAGCACCAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTGCGGTCCAACTGTCCTGGAAATaGCAGGCTGTTCCTTGGCTT +
Preference number: 4 (lower is better)
Translates to: SAPRQYHCQTPRTPVPAVQLSWK*QAVPWL
Trigger: AAGCCAAGGAACAGCCTGTCATTTCCAGGACAGTTG...GACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR TCA 90 bp CATTGCAGAAAGCCATGCAGCCTGCTGGTGTCATCACTGGTCACCCACAGCAGCCTGGACTTTTCCTCCTaGGGAGAAAGGCAGGGGTTG +
Preference number: 4 (lower is better)
Translates to: HCRKPCSLLVSSLVTHSSLDFSS*GERQGL
Trigger: CAACCCCTGCCTTTCTCCTCAGGAGGAAAAGTCCAG...GCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR TCA 90 bp ACCAAGCCATCTCATGGCCTCACTACTCACCCATACACACATCACAAACAGGACTGTCTCAGGGTCCCCTaGGCCTTCCGGCTTGGCCAG +
Preference number: 4 (lower is better)
Translates to: TKPSHGLTTHPYTHHKQDCLRVP*AFRLGQ
Trigger: CTGGCCAAGCCGGAAGGCTCAGGGGACCCTGAGACA...GTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCCATGAGATGGCTTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp GGGGAGGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACACGGGATGGGCAAGGTaGTGCTGTGGGCAGGCTCGG +
Preference number: 4 (lower is better)
Translates to: GEDGWSVCQHLGTFYNSDTGWAR*CCGQAR
Trigger: CCGAGCCTGCCCACAGCAGCACCTTGCCCATCCCGT...GTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCCTCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp CCTGCTGGTGTCATCACTGGTCACCCACAGCAGCTGTGGGAGGGTTTGCCCTCACACTGTCAATGTTGCTaGTGTCACCTTCAGAACGGG +
Preference number: 4 (lower is better)
Translates to: PAGVITGHPQQLWEGLPSHCQCC*CHLQNG
Trigger: CCCGTTCTGAAGGTGACAGCAGCAACATTGACAGTG...TGAGGGCAAACCCTCCCACAGCTGCTGTGGGTGACCAGTGATGACACCAGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TCAGCACCAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTGCGGTCCACTGTCAATGTTGCTaGTGTCACCTTCAGAACGGG +
Preference number: 4 (lower is better)
Translates to: SAPRQYHCQTPRTPVPAVHCQCC*CHLQNG
Trigger: CCCGTTCTGAAGGTGACAGCAGCAACATTGACAGTG...GACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp GCCTTCTTTCTCCTGGGTAGAGGCAGCATTGCAGAAAGCCATGCAGCCTGCTGGCAGCTCCGTAGTGCCTaGTGTCTGTGGTCTTTCCAG +
Preference number: 4 (lower is better)
Translates to: AFFLLGRGSIAESHAACWQLRSA*CLWSFQ
Trigger: CTGGAAAGACCACAGACAGCAGGCACTACGGAGCTG...CCAGCAGGCTGCATGGCTTTCTGCAATGCTGCCTCTACCCAGGAGAAAGAAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp GCATGCATGCACACACATCAGGCAAGACACGGACACTGCTTCCCACAGCCATGGCAGCTCCGTAGTGCCTaGTGTCTGTGGTCTTTCCAG +
Preference number: 4 (lower is better)
Translates to: ACMHTHQARHGHCFPQPWQLRSA*CLWSFQ
Trigger: CTGGAAAGACCACAGACAGCAGGCACTACGGAGCTG...CCATGGCTGTGGGAAGCAGTGTCCGTGTCTTGCCTGATGTGTGTGCATGCATGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp TTGCTGCGATCTCCAGGCCTGAATATCTTCACAAGCAAAGCGGTTCCAGCCTCTTGCATACAGCAGGCTTaGGGGCCAGCCTCGTGTCCC +
Preference number: 4 (lower is better)
Translates to: LLRSPGLNIFTSKAVPASCIQQA*GPASCP
Trigger: GGGACACGAGGCTGGCCCCCAAGCCTGCTGTATGCA...AGAGGCTGGAACCGCTTTGCTTGTGAAGATATTCAGGCCTGGAGATCGCAGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GCCTTCTTTCTCCTGGGTAGAGGCAGCATTGCAGAAAGCCATGCAGCCTGCTGGATAGAGGGGGCCCCTTaGGACATAGGTTCAGAAGCC +
Preference number: 4 (lower is better)
Translates to: AFFLLGRGSIAESHAACWIEGAP*DIGSEA
Trigger: GGCTTCTGAACCTATGTCCCAAGGGGCCCCCTCTAT...CCAGCAGGCTGCATGGCTTTCTGCAATGCTGCCTCTACCCAGGAGAAAGAAGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CATTGCAGAAAGCCATGCAGCCTGCTGGTGTCATCACTGGTCACCCACAGCAGCTTGGGGACAGAAGAGTaGGTTCCTGGATGGAGGCCT +
Preference number: 4 (lower is better)
Translates to: HCRKPCSLLVSSLVTHSSLGTEE*VPGWRP
Trigger: AGGCCTCCATCCAGGAACCCACTCTTCTGTCCCCAA...GCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACCCAGGGCCAGGCGAAGACAGTaGACCCTGGGCAGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: GWLECVPAFGHFLQFRPRARRRQ*TLGRLR
Trigger: CCTCAGCCTGCCCAGGGTCCACTGTCTTCGCCTGGC...CCTGGGTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp ATTACAGGTCATGACTACAGAATCCAGGGACACCCTTGCCCCAGTGGTATCCTGCCTCAGATGTGGGGCTaGAGGCTGAAGGAGGGTGGC +
Preference number: 4 (lower is better)
Translates to: ITGHDYRIQGHPCPSGILPQMWG*RLKEGG
Trigger: GCCACCCTCCTTCAGCCTCCAGCCCCACATCTGAGG...CAGGATACCACTGGGGCAAGGGTGTCCCTGGATTCTGTAGTCATGACCTGTAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CATTGCAGAAAGCCATGCAGCCTGCTGGTGTCATCACTGGTCACCCACAGCAGCCTGCAACCCCAGGGTTaGGTCTTTCCTACAGGGCAT +
Preference number: 4 (lower is better)
Translates to: HCRKPCSLLVSSLVTHSSLQPQG*VFPTGH
Trigger: ATGCCCTGTAGGAAAGACCCAACCCTGGGGTTGCAG...GCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CCTGCTGGTGTCATCACTGGTCACCCACAGCAGCTGTGGGAGGGTTTGCCCTCACTGGATAGCCTGCTCTaGTGTGCAAAGTCACTCCAA +
Preference number: 4 (lower is better)
Translates to: PAGVITGHPQQLWEGLPSLDSLL*CAKSLQ
Trigger: TTGGAGTGACTTTGCACACCAGAGCAGGCTATCCAG...TGAGGGCAAACCCTCCCACAGCTGCTGTGGGTGACCAGTGATGACACCAGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
3UTR CAA 72 bp AGGGCTGGGGCTCACCATCACAGGTGGCTAAGGTGTTaGGAGACCAAGCCATCTCATGGCCTCACTACTCAC +
Preference number: 4 (lower is better)
Translates to: RAGAHHHRWLRC*ETKPSHGLTTH
Trigger: GTGAGTAGTGAGGCCATGAGATGGCTTGGTCTCCAAACACCTTAGCCACCTGTGATGGTGAGCCCCAGCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp GGGGAGGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACAGTCCTCGCTGCTCATaGTCGCTGGGGAGGTGGAGC +
Preference number: 4 (lower is better)
Translates to: GEDGWSVCQHLGTFYNSDSPRCS*SLGRWS
Trigger: GCTCCACCTCCCCAGCGAGCATGAGCAGCGAGGACT...GTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCCTCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TGCCCCAGTGGTATCCTGACATACCTCAACCACATTAGCACTTCCAAGGTAAATCCCACCCCTGCTCTGTaGAGCCTCCGGTCTGTGGGC +
Preference number: 4 (lower is better)
Translates to: CPSGILTYLNHISTSKVNPTPAL*SLRSVG
Trigger: GCCCACAGACCGGAGGCTGCACAGAGCAGGGGTGGG...ATTTACCTTGGAAGTGCTAATGTGGTTGAGGTATGTCAGGATACCACTGGGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp CTCAGGGAAGACAGGTGGAATCACAACACAGATGTAATCTTCACATCTGGGCTCTCCTCACCCCACCCCTaGTCTGTGCAGCCTCCGGTC +
Preference number: 4 (lower is better)
Translates to: LREDRWNHNTDVIFTSGLSSPHP*SVQPPV
Trigger: GACCGGAGGCTGCACAGAGCAGGGGTGGGGTGAGGA...GAGCCCAGATGTGAAGATTACATCTGTGTTGTGATTCCACCTGTCTTCCCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp GGGGAGGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACATGGAGGCCTGTCGCTaGCTTCCATGGGGGCTGGCA +
Preference number: 4 (lower is better)
Translates to: GEDGWSVCQHLGTFYNSDMEACR*LPWGLA
Trigger: TGCCAGCCCCCATGGAAGGCAGCGACAGGCCTCCAT...GTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCCTCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp GCCTTCTTTCTCCTGGGTAGAGGCAGCATTGCAGAAAGCCATGCAGCCTGCTGGCATCTTTGCCTTCTCTaGCACACTGCTTCCTGGGCT +
Preference number: 4 (lower is better)
Translates to: AFFLLGRGSIAESHAACWHLCLL*HTASWA
Trigger: AGCCCAGGAAGCAGTGTGGCAGAGAAGGCAAAGATG...CCAGCAGGCTGCATGGCTTTCTGCAATGCTGCCTCTACCCAGGAGAAAGAAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp ATGATCCCCTACTTCCACCCTATGCTGCCTAACACACAGGCACACTCTCTCTCTCGTCCTCGCCCCCTGTaGCACCCATCTTTGCCTTCT +
Preference number: 4 (lower is better)
Translates to: MIPYFHPMLPNTQAHSLSRPRPL*HPSLPS
Trigger: AGAAGGCAAAGATGGGTGGCACAGGGGGCGAGGACG...AGAGAGAGAGTGTGCCTGTGTGTTAGGCAGCATAGGGTGGAAGTAGGGGATCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp CATTGCAGAAAGCCATGCAGCCTGCTGGTGTCATCACTGGTCACCCACAGCAGCGTCATCACTGTCCACTaGACTGTCCTCAGATGTGGG +
Preference number: 4 (lower is better)
Translates to: HCRKPCSLLVSSLVTHSSVITVH*TVLRCG
Trigger: CCCACATCTGAGGACAGTGCAGTGGACAGTGATGAC...GCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TTGCTGCGATCTCCAGGCCTGAATATCTTCACAAGCAAAGCGGTTCCAGCCTCTGTGCACACTCCAGGCTaGAACCCCAGGGTTGGGTCT +
Preference number: 4 (lower is better)
Translates to: LLRSPGLNIFTSKAVPASVHTPG*NPRVGS
Trigger: AGACCCAACCCTGGGGTTGCAGCCTGGAGTGTGCAC...AGAGGCTGGAACCGCTTTGCTTGTGAAGATATTCAGGCCTGGAGATCGCAGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp ACAGGCACCTCAGCACCAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTGCTGGATAGCCTGCTCTaGTGTGCAAAGTCACTCCAA +
Preference number: 4 (lower is better)
Translates to: TGTSAPRQYHCQTPRTPVLDSLL*CAKSLQ
Trigger: TTGGAGTGACTTTGCACACCAGAGCAGGCTATCCAG...CACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGAGGTGCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp TTAGGACCACAACGGGACCACAGAGCCTGCCACCACATCAAAGTTCCAACGTGGCTTTACTGCTCACTGTaGCACTGCCCCCATCCTCCA +
Preference number: 4 (lower is better)
Translates to: LGPQRDHRACHHIKVPTWLYCSL*HCPHPP
Trigger: TGGAGGATGGGGGCAGTGCCACAGTGAGCAGTAAAG...CCACGTTGGAACTTTGATGTGGTGGCAGGCTCTGTGGTCCCGTTGTGGTCCTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR TCA 90 bp CTCAGGGAAGACAGGTGGAATCACAACACAGATGTAATCTTCACATCTGGGCTCTACCTGAGCCGGGAGTaGGCTGTGAGGGACACGGGA +
Preference number: 4 (lower is better)
Translates to: LREDRWNHNTDVIFTSGLYLSRE*AVRDTG
Trigger: TCCCGTGTCCCTCACAGCTCACTCCCGGCTCAGGTA...GAGCCCAGATGTGAAGATTACATCTGTGTTGTGATTCCACCTGTCTTCCCTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR TCA 90 bp CATTGCAGAAAGCCATGCAGCCTGCTGGTGTCATCACTGGTCACCCACAGCAGCCAACTGTCCTGGAAATaGCAGGCTGTTCCTTGGCTT +
Preference number: 4 (lower is better)
Translates to: HCRKPCSLLVSSLVTHSSQLSWK*QAVPWL
Trigger: AAGCCAAGGAACAGCCTGTCATTTCCAGGACAGTTG...GCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp CTCAGGGAAGACAGGTGGAATCACAACACAGATGTAATCTTCACATCTGGGCTCGGGCGGTCAGCTTCGTaGTCACTGGGGTCTCAGGCT +
Preference number: 4 (lower is better)
Translates to: LREDRWNHNTDVIFTSGLGRSAS*SLGSQA
Trigger: AGCCTGAGACCCCAGTGAGCACGAAGCTGACCGCCC...GAGCCCAGATGTGAAGATTACATCTGTGTTGTGATTCCACCTGTCTTCCCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GATGTAATCTTCACATCTGGGCTCCAGCACATCTTCAGTTCCCAGTTGCCACAGCTGGAGCGCCACCACTaGAGGGGCGTTCATGAGGAA +
Preference number: 4 (lower is better)
Translates to: DVIFTSGLQHIFSSQLPQLERHH*RGVHEE
Trigger: TTCCTCATGAACGCCCCTCCAGTGGTGGCGCTCCAG...CTGTGGCAACTGGGAACTGAAGATGTGCTGGAGCCCAGATGTGAAGATTACATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp ATGATCCCCTACTTCCACCCTATGCTGCCTAACACACAGGCACACTCTCTCTCTCCATCAGAGCTGCCCTaGCTGAGGTTTCTCGGTTCC +
Preference number: 4 (lower is better)
Translates to: MIPYFHPMLPNTQAHSLSPSELP*LRFLGS
Trigger: GGAACCGAGAAACCTCAGCCAGGGCAGCTCTGATGG...AGAGAGAGAGTGTGCCTGTGTGTTAGGCAGCATAGGGTGGAAGTAGGGGATCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACCCAGGGAGTGGGTTCCTGGATaGAGGCCTGTCGCTGCCTTC +
Preference number: 4 (lower is better)
Translates to: GWLECVPAFGHFLQFRPREWVPG*RPVAAF
Trigger: GAAGGCAGCGACAGGCCTCCATCCAGGAACCCACTC...CCTGGGTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp TTGCTGCGATCTCCAGGCCTGAATATCTTCACAAGCAAAGCGGTTCCAGCCTCTTGTCCCCTCTGCACTTaGGCAGACAGCTCCGTAGTG +
Preference number: 4 (lower is better)
Translates to: LLRSPGLNIFTSKAVPASCPLCT*ADSSVV
Trigger: CACTACGGAGCTGTCTGCCCAAGTGCAGAGGGGACA...AGAGGCTGGAACCGCTTTGCTTGTGAAGATATTCAGGCCTGGAGATCGCAGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GGGGAGGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACGAGGCTGAAGGAGGGTaGCCACTGGCTCCTGTGTCT +
Preference number: 4 (lower is better)
Translates to: GEDGWSVCQHLGTFYNSDEAEGG*PLAPVS
Trigger: AGACACAGGAGCCAGTGGCCACCCTCCTTCAGCCTC...GTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCCTCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GGGGAGGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACCCTACAGGGCATCTCTaGCTTGGCAGGTCCCCCTTG +
Preference number: 4 (lower is better)
Translates to: GEDGWSVCQHLGTFYNSDPTGHL*LGRSPL
Trigger: CAAGGGGGACCTGCCAAGCCAGAGATGCCCTGTAGG...GTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCCTCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GGCCTCACTACTCACCCATACACACATCACAAACAGGACAGTCAAAACGGATATAAGGCAGGCCCTTCCTaGGGCCTGAGGAGAGGCTGG +
Preference number: 4 (lower is better)
Translates to: GLTTHPYTHHKQDSQNGYKAGPS*GLRRGW
Trigger: CCAGCCTCTCCTCAGGCCCCAGGAAGGGCCTGCCTT...ATATCCGTTTTGACTGTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp ATTACAGGTCATGACTACAGAATCCAGGGACACCCTTGCCCCAGTGGTATCCTGCCAAATACAGGGTTGTaGCCAGGCTGGGTCTCCCTG +
Preference number: 4 (lower is better)
Translates to: ITGHDYRIQGHPCPSGILPNTGL*PGWVSL
Trigger: CAGGGAGACCCAGCCTGGCCACAACCCTGTATTTGG...CAGGATACCACTGGGGCAAGGGTGTCCCTGGATTCTGTAGTCATGACCTGTAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR TCA 90 bp CATTGCAGAAAGCCATGCAGCCTGCTGGTGTCATCACTGGTCACCCACAGCAGCGAGGTTTTCGGAAGATaGACTCCTTACACGTTCCCA +
Preference number: 4 (lower is better)
Translates to: HCRKPCSLLVSSLVTHSSEVFGR*TPYTFP
Trigger: TGGGAACGTGTAAGGAGTTCATCTTCCGAAAACCTC...GCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp GGGAACATGGATGACGACACAAAGCTGTTTCTCCTAGAAACACACGAACAAATATGCGCCTGGCAGGCATaGTCCTCCTCACCCCACCCC +
Preference number: 4 (lower is better)
Translates to: GNMDDDTKLFLLETHEQICAWQA*SSSPHP
Trigger: GGGGTGGGGTGAGGAGGAGCATGCCTGCCAGGCGCA...TATTTGTTCGTGTGTTTCTAGGAGAAACAGCTTTGTGTCGTCATCCATGTTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TTGCTGCGATCTCCAGGCCTGAATATCTTCACAAGCAAAGCGGTTCCAGCCTCTCTTTTTGGCTCCGTGTaGACACTCCAGGCTGCAACC +
Preference number: 4 (lower is better)
Translates to: LLRSPGLNIFTSKAVPASLFGSV*TLQAAT
Trigger: GGTTGCAGCCTGGAGTGTGCACACGGAGCCAAAAAG...AGAGGCTGGAACCGCTTTGCTTGTGAAGATATTCAGGCCTGGAGATCGCAGCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp AGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTGCGGTCTGGCCTCAGCACTTTAGCAAGTTCTGACTaGCATAGTTCAGGTGAAAGG +
Preference number: 4 (lower is better)
Translates to: SITAKLPGPQCLRSGLSTLASSD*HSSGER
Trigger: CCTTTCACCTGAACTATGGCAGTCAGAACTTGCTAA...AGTGCTGAGGCCAGACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp GGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACCCAGGTGCTCACTGTGGCACTaGCCCCATCCTCCATGGAAG +
Preference number: 4 (lower is better)
Translates to: GWLECVPAFGHFLQFRPRCSLWH*PHPPWK
Trigger: CTTCCATGGAGGATGGGGGCAGTGCCACAGTGAGCA...CCTGGGTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CTCAGGGAAGACAGGTGGAATCACAACACAGATGTAATCTTCACATCTGGGCTCCTGGAGCGCCACCACTaGAGGGGCGTTCATGAGGAA +
Preference number: 4 (lower is better)
Translates to: LREDRWNHNTDVIFTSGLLERHH*RGVHEE
Trigger: TTCCTCATGAACGCCCCTCCAGTGGTGGCGCTCCAG...GAGCCCAGATGTGAAGATTACATCTGTGTTGTGATTCCACCTGTCTTCCCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GATGTAATCTTCACATCTGGGCTCCAGCACATCTTCAGTTCCCAGTTGCCACAGCAGCTTCGTGCTCACTaGGGTCTCAGGCTCTGTGGT +
Preference number: 4 (lower is better)
Translates to: DVIFTSGLQHIFSSQLPQQLRAH*GLRLCG
Trigger: ACCACAGAGCCTGAGACCCCAGTGAGCACGAAGCTG...CTGTGGCAACTGGGAACTGAAGATGTGCTGGAGCCCAGATGTGAAGATTACATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp ACCAAGCCATCTCATGGCCTCACTACTCACCCATACACACATCACAAACAGGACTGCCGTCGTCACTGCTaGAGTCTGATGCCTGGTGCA +
Preference number: 4 (lower is better)
Translates to: TKPSHGLTTHPYTHHKQDCRRHC*SLMPGA
Trigger: TGCACCAGGCATCAGACTCCAGCAGTGACGACGGCA...GTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCCATGAGATGGCTTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GCATGCATGCACACACATCAGGCAAGACACGGACACTGCTTCCCACAGCCATGGCACTGGCCTCCTTCCTaGTTTTCTCTAGCTGGTATA +
Preference number: 4 (lower is better)
Translates to: ACMHTHQARHGHCFPQPWHWPPS*FSLAGI
Trigger: TATACCAGCTAGAGAAAACCAGGAAGGAGGCCAGTG...CCATGGCTGTGGGAAGCAGTGTCCGTGTCTTGCCTGATGTGTGTGCATGCATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GGCCTCACTACTCACCCATACACACATCACAAACAGGACAGTCAAAACGGATATCTGGCCTCTCAGAGGTaGGTCCCCACTGGCCTCCTT +
Preference number: 4 (lower is better)
Translates to: GLTTHPYTHHKQDSQNGYLASQR*VPTGLL
Trigger: AAGGAGGCCAGTGGGGACCCACCTCTGAGAGGCCAG...ATATCCGTTTTGACTGTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACCCAGGAATCCGTCAGGAGCCTaGAGAGGGGATCAGGGTGGA +
Preference number: 4 (lower is better)
Translates to: GWLECVPAFGHFLQFRPRNPSGA*RGDQGG
Trigger: TCCACCCTGATCCCCTCTCCAGGCTCCTGACGGATT...CCTGGGTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp TCATGGCCTCACTACTCACCCATACACACATCACAAACAGGACAGTCAAAACGGTGCCACACTGCTTCCTaGGCTTCGTCCTGGGCCATC +
Preference number: 4 (lower is better)
Translates to: SWPHYSPIHTSQTGQSKRCHTAS*ASSWAI
Trigger: GATGGCCCAGGACGAAGCCCAGGAAGCAGTGTGGCA...CCGTTTTGACTGTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCCATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CTCAGGGAAGACAGGTGGAATCACAACACAGATGTAATCTTCACATCTGGGCTCGAGGCTGAAGGAGGGTaGCCACTGGCTCCTGTGTCT +
Preference number: 4 (lower is better)
Translates to: LREDRWNHNTDVIFTSGLEAEGG*PLAPVS
Trigger: AGACACAGGAGCCAGTGGCCACCCTCCTTCAGCCTC...GAGCCCAGATGTGAAGATTACATCTGTGTTGTGATTCCACCTGTCTTCCCTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp ATGATCCCCTACTTCCACCCTATGCTGCCTAACACACAGGCACACTCTCTCTCTTTGGCGGAGATGCTTTaGCAGAGCTGTTCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: MIPYFHPMLPNTQAHSLSLAEML*QSCSCR
Trigger: CCTGCAGGAACAGCTCTGCCAAAGCATCTCCGCCAA...AGAGAGAGAGTGTGCCTGTGTGTTAGGCAGCATAGGGTGGAAGTAGGGGATCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp TGCCCCAGTGGTATCCTGACATACCTCAACCACATTAGCACTTCCAAGGTAAATAGGACGAGGTCAGCCTaGGACCCAGGGTTGGGGGTT +
Preference number: 4 (lower is better)
Translates to: CPSGILTYLNHISTSKVNRTRSA*DPGLGV
Trigger: AACCCCCAACCCTGGGTCCCAGGCTGACCTCGTCCT...ATTTACCTTGGAAGTGCTAATGTGGTTGAGGTATGTCAGGATACCACTGGGGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp ATTACAGGTCATGACTACAGAATCCAGGGACACCCTTGCCCCAGTGGTATCCTGACCGAACACACTTTCTaGCGTTGCAGTCTGGCTTCC +
Preference number: 4 (lower is better)
Translates to: ITGHDYRIQGHPCPSGILTEHTF*RCSLAS
Trigger: GGAAGCCAGACTGCAACGGCAGAAAGTGTGTTCGGT...CAGGATACCACTGGGGCAAGGGTGTCCCTGGATTCTGTAGTCATGACCTGTAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TTGCTGCGATCTCCAGGCCTGAATATCTTCACAAGCAAAGCGGTTCCAGCCTCTATGGGCTGGATAGCCTaGTCTGGTGTGCAAAGTCAC +
Preference number: 4 (lower is better)
Translates to: LLRSPGLNIFTSKAVPASMGWIA*SGVQSH
Trigger: GTGACTTTGCACACCAGAGCAGGCTATCCAGCCCAT...AGAGGCTGGAACCGCTTTGCTTGTGAAGATATTCAGGCCTGGAGATCGCAGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CTCAGGGAAGACAGGTGGAATCACAACACAGATGTAATCTTCACATCTGGGCTCCTCAGAGAAGCAGTCTaGGAGGCAGAAGCTCCTGGG +
Preference number: 4 (lower is better)
Translates to: LREDRWNHNTDVIFTSGLLREAV*EAEAPG
Trigger: CCCAGGAGCTTCTGCCTCCCAGACTGCTTCTCTGAG...GAGCCCAGATGTGAAGATTACATCTGTGTTGTGATTCCACCTGTCTTCCCTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACCCAGGATAGAGGGGGCCCCTTaGGACATAGGTTCAGAAGCC +
Preference number: 4 (lower is better)
Translates to: GWLECVPAFGHFLQFRPRIEGAP*DIGSEA
Trigger: GGCTTCTGAACCTATGTCCCAAGGGGCCCCCTCTAT...CCTGGGTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp ATTACAGGTCATGACTACAGAATCCAGGGACACCCTTGCCCCAGTGGTATCCTGAGCCCTGATCTTCACTaGCTCCCACAGGAACACTAC +
Preference number: 4 (lower is better)
Translates to: ITGHDYRIQGHPCPSGILSPDLH*LPQEHY
Trigger: GTAGTGTTCCTGTGGGAGCCAGTGAAGATCAGGGCT...CAGGATACCACTGGGGCAAGGGTGTCCCTGGATTCTGTAGTCATGACCTGTAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CTCAGGGAAGACAGGTGGAATCACAACACAGATGTAATCTTCACATCTGGGCTCGCTAGGCGTGAGGCCTaGCACACAGCTTCACTCTTG +
Preference number: 4 (lower is better)
Translates to: LREDRWNHNTDVIFTSGLARREA*HTASLL
Trigger: CAAGAGTGAAGCTGTGTGCCAGGCCTCACGCCTAGC...GAGCCCAGATGTGAAGATTACATCTGTGTTGTGATTCCACCTGTCTTCCCTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CTCAGGGAAGACAGGTGGAATCACAACACAGATGTAATCTTCACATCTGGGCTCTGTCGCTGCCTTCCATaGGGGCTGGCAGAATGGTCT +
Preference number: 4 (lower is better)
Translates to: LREDRWNHNTDVIFTSGLCRCLP*GLAEWS
Trigger: AGACCATTCTGCCAGCCCCCATGGAAGGCAGCGACA...GAGCCCAGATGTGAAGATTACATCTGTGTTGTGATTCCACCTGTCTTCCCTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp ACCAAGCCATCTCATGGCCTCACTACTCACCCATACACACATCACAAACAGGACCTGCAACCCCAGGGTTaGGTCTTTCCTACAGGGCAT +
Preference number: 4 (lower is better)
Translates to: TKPSHGLTTHPYTHHKQDLQPQG*VFPTGH
Trigger: ATGCCCTGTAGGAAAGACCCAACCCTGGGGTTGCAG...GTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCCATGAGATGGCTTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR TCA 90 bp CATACACACATCACAAACAGGACAGTCAAAACGGATATGTGGGATCACCTTTTAGCCGGGAGTGAGCTGTaGGGGACACGGGATGGGCAA +
Preference number: 4 (lower is better)
Translates to: HTHITNRTVKTDMWDHLLAGSEL*GTRDGQ
Trigger: TTGCCCATCCCGTGTCCCTCACAGCTCACTCCCGGC...TAAAAGGTGATCCCACATATCCGTTTTGACTGTCCTGTTTGTGATGTGTGTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR TCA 90 bp ACCAAGCCATCTCATGGCCTCACTACTCACCCATACACACATCACAAACAGGACCTGTGCTGCCAAATCTaGCCTTCTTACAGGAAGCCC +
Preference number: 4 (lower is better)
Translates to: TKPSHGLTTHPYTHHKQDLCCQI*PSYRKP
Trigger: GGGCTTCCTGTAAGAAGGTCAGATTTGGCAGCACAG...GTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCCATGAGATGGCTTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR TCA 90 bp TCATGGCCTCACTACTCACCCATACACACATCACAAACAGGACAGTCAAAACGGCTGGACTTTTCCTCCTaGGGAGAAAGGCAGGGGTTG +
Preference number: 4 (lower is better)
Translates to: SWPHYSPIHTSQTGQSKRLDFSS*GERQGL
Trigger: CAACCCCTGCCTTTCTCCTCAGGAGGAAAAGTCCAG...CCGTTTTGACTGTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCCATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TTTACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATGACGCTCATGGCCCATaGCCAGGGCAGCCTCGTCCC +
Preference number: 4 (lower is better)
Translates to: FTIQTQVHKVENSLPCQNDAHGP*PGQPRP
Trigger: GGGACGAGGCTGCCCTGGGCATGGGCCATGAGCGTC...ATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGTAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp CTCAGGGAAGACAGGTGGAATCACAACACAGATGTAATCTTCACATCTGGGCTCCCAGCTCCAAGGGACTaGGTCTCCCAGCTTCATCTT +
Preference number: 4 (lower is better)
Translates to: LREDRWNHNTDVIFTSGLPAPRD*VSQLHL
Trigger: AAGATGAAGCTGGGAGACGCAGTCCCTTGGAGCTGG...GAGCCCAGATGTGAAGATTACATCTGTGTTGTGATTCCACCTGTCTTCCCTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp CTCAGGGAAGACAGGTGGAATCACAACACAGATGTAATCTTCACATCTGGGCTCCACACTTTCTGCCGTTaGAGTCTGGCTTCCCTGTGG +
Preference number: 4 (lower is better)
Translates to: LREDRWNHNTDVIFTSGLHTFCR*SLASLW
Trigger: CCACAGGGAAGCCAGACTGCAACGGCAGAAAGTGTG...GAGCCCAGATGTGAAGATTACATCTGTGTTGTGATTCCACCTGTCTTCCCTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp CATTGCAGAAAGCCATGCAGCCTGCTGGTGTCATCACTGGTCACCCACAGCAGCTTAGCAAGTTCTGACTaGCATAGTTCAGGTGAAAGG +
Preference number: 4 (lower is better)
Translates to: HCRKPCSLLVSSLVTHSSLASSD*HSSGER
Trigger: CCTTTCACCTGAACTATGGCAGTCAGAACTTGCTAA...GCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GGGGAGGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACGTGGTGGGCTTAGGCTaGAAGTTTCTCTGCTGTGTG +
Preference number: 4 (lower is better)
Translates to: GEDGWSVCQHLGTFYNSDVVGLG*KFLCCV
Trigger: CACACAGCAGAGAAACTTCCAGCCTAAGCCCACCAC...GTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCCTCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR TCA 90 bp CATACACACATCACAAACAGGACAGTCAAAACGGATATGTGGGATCACCTTTTACCGTCATGGCCAGGCTaGGCTTTCCCCTGGATGTGG +
Preference number: 4 (lower is better)
Translates to: HTHITNRTVKTDMWDHLLPSWPG*AFPWMW
Trigger: CCACATCCAGGGGAAAGCTCAGCCTGGCCATGACGG...TAAAAGGTGATCCCACATATCCGTTTTGACTGTCCTGTTTGTGATGTGTGTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TGCCCCAGTGGTATCCTGACATACCTCAACCACATTAGCACTTCCAAGGTAAATCTTTTTGGCTCCGTGTaGACACTCCAGGCTGCAACC +
Preference number: 4 (lower is better)
Translates to: CPSGILTYLNHISTSKVNLFGSV*TLQAAT
Trigger: GGTTGCAGCCTGGAGTGTGCACACGGAGCCAAAAAG...ATTTACCTTGGAAGTGCTAATGTGGTTGAGGTATGTCAGGATACCACTGGGGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TCATGGCCTCACTACTCACCCATACACACATCACAAACAGGACAGTCAAAACGGGAGAATGCGGGAGCCTaGAGAGGTAAGCCTAGATTG +
Preference number: 4 (lower is better)
Translates to: SWPHYSPIHTSQTGQSKRENAGA*RGKPRL
Trigger: CAATCTAGGCTTACCTCTGCAGGCTCCCGCATTCTC...CCGTTTTGACTGTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCCATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CATACACACATCACAAACAGGACAGTCAAAACGGATATGTGGGATCACCTTTTAGGCAAGGTGCTGCTGTaGGCAGGCTCGGGGATAGAG +
Preference number: 4 (lower is better)
Translates to: HTHITNRTVKTDMWDHLLGKVLL*AGSGIE
Trigger: CTCTATCCCCGAGCCTGCCCACAGCAGCACCTTGCC...TAAAAGGTGATCCCACATATCCGTTTTGACTGTCCTGTTTGTGATGTGTGTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CATACACACATCACAAACAGGACAGTCAAAACGGATATGTGGGATCACCTTTTACTGGCCTCTCAGAGGTaGGTCCCCACTGGCCTCCTT +
Preference number: 4 (lower is better)
Translates to: HTHITNRTVKTDMWDHLLLASQR*VPTGLL
Trigger: AAGGAGGCCAGTGGGGACCCACCTCTGAGAGGCCAG...TAAAAGGTGATCCCACATATCCGTTTTGACTGTCCTGTTTGTGATGTGTGTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GGCCTCACTACTCACCCATACACACATCACAAACAGGACAGTCAAAACGGATATCTTTCCTCTTTCAGCTaGCCTCTCAGAGGTGGGTCC +
Preference number: 4 (lower is better)
Translates to: GLTTHPYTHHKQDSQNGYLSSFS*PLRGGS
Trigger: GGACCCACCTCTGAGAGGCCAGCTGAAAGAGGAAAG...ATATCCGTTTTGACTGTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp TTTACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATGAGAGGGGATCAGGGTaGAGGACCCCCTGGGTGGTG +
Preference number: 4 (lower is better)
Translates to: FTIQTQVHKVENSLPCQNERGSG*RTPWVV
Trigger: CACCACCCAGGGGGTCCTCCACCCTGATCCCCTCTC...ATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGTAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp ACCAAGCCATCTCATGGCCTCACTACTCACCCATACACACATCACAAACAGGACCTGGCAGAATGGTCTTaGAGATGTCCAGGATCGCTT +
Preference number: 4 (lower is better)
Translates to: TKPSHGLTTHPYTHHKQDLAEWS*RCPGSL
Trigger: AAGCGATCCTGGACATCTCCAAGACCATTCTGCCAG...GTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCCATGAGATGGCTTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp TTTACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATTTGGGGATGCCAGGCTaGCCACTGGGGCCAGGCGAA +
Preference number: 4 (lower is better)
Translates to: FTIQTQVHKVENSLPCQNLGMPG*PLGPGE
Trigger: TTCGCCTGGCCCCAGTGGCCAGCCTGGCATCCCCAA...ATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GGCCTCACTACTCACCCATACACACATCACAAACAGGACAGTCAAAACGGATATTCCTGGGCTTCGTCCTaGGCCATCTTTATTGTCCCC +
Preference number: 4 (lower is better)
Translates to: GLTTHPYTHHKQDSQNGYSWASS*AIFIVP
Trigger: GGGGACAATAAAGATGGCCCAGGACGAAGCCCAGGA...ATATCCGTTTTGACTGTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp GAAAACTCTCTCCCATGTCAGAATACCAATAGAATTCAGCCACAAAGTAGCCACCTTTCTCCAGGGCGCTaGAGTTTGCCACGAGACCAC +
Preference number: 4 (lower is better)
Translates to: ENSLPCQNTNRIQPQSSHLSPGR*SLPRDH
Trigger: GTGGTCTCGTGGCAAACTGCAGCGCCCTGGAGAAAG...GTGGCTACTTTGTGGCTGAATTCTATTGGTATTCTGACATGGGAGAGAGTTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp ATGATCCCCTACTTCCACCCTATGCTGCCTAACACACAGGCACACTCTCTCTCTGGCTGGAAGTTTCTCTaGTGTGTGCTCATCTTTGTT +
Preference number: 4 (lower is better)
Translates to: MIPYFHPMLPNTQAHSLSGWKFL*CVLIFV
Trigger: AACAAAGATGAGCACACAGCAGAGAAACTTCCAGCC...AGAGAGAGAGTGTGCCTGTGTGTTAGGCAGCATAGGGTGGAAGTAGGGGATCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TTTACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATATGGAGGCCTGTCGCTaGCTTCCATGGGGGCTGGCA +
Preference number: 4 (lower is better)
Translates to: FTIQTQVHKVENSLPCQNMEACR*LPWGLA
Trigger: TGCCAGCCCCCATGGAAGGCAGCGACAGGCCTCCAT...ATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGTAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp ATGATCCCCTACTTCCACCCTATGCTGCCTAACACACAGGCACACTCTCTCTCTCATCACTGTCAATGTTaGTGCTGTCACCTTCAGAAC +
Preference number: 4 (lower is better)
Translates to: MIPYFHPMLPNTQAHSLSHHCQC*CCHLQN
Trigger: GTTCTGAAGGTGACAGCAGCAACATTGACAGTGATG...AGAGAGAGAGTGTGCCTGTGTGTTAGGCAGCATAGGGTGGAAGTAGGGGATCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TGCCCCAGTGGTATCCTGACATACCTCAACCACATTAGCACTTCCAAGGTAAATATGGGCTGGATAGCCTaGTCTGGTGTGCAAAGTCAC +
Preference number: 4 (lower is better)
Translates to: CPSGILTYLNHISTSKVNMGWIA*SGVQSH
Trigger: GTGACTTTGCACACCAGAGCAGGCTATCCAGCCCAT...ATTTACCTTGGAAGTGCTAATGTGGTTGAGGTATGTCAGGATACCACTGGGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp ACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATACCGACCTCTCTGCACGTTaGCCTCTTTGGGTGAGACGC +
Preference number: 4 (lower is better)
Translates to: TIQTQVHKVENSLPCQNTDLSAR*PLWVRR
Trigger: GCGTCTCACCCAAAGAGGCCAACGTGCAGAGAGGTC...GGTATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GAAAACTCTCTCCCATGTCAGAATACCAATAGAATTCAGCCACAAAGTAGCCACCAGCTTCGTGCTCACTaGGGTCTCAGGCTCTGTGGT +
Preference number: 4 (lower is better)
Translates to: ENSLPCQNTNRIQPQSSHQLRAH*GLRLCG
Trigger: ACCACAGAGCCTGAGACCCCAGTGAGCACGAAGCTG...GTGGCTACTTTGTGGCTGAATTCTATTGGTATTCTGACATGGGAGAGAGTTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp ACCAAGCCATCTCATGGCCTCACTACTCACCCATACACACATCACAAACAGGACCACTGGCCTCCTTCCTaGTTTTCTCTAGCTGGTATA +
Preference number: 4 (lower is better)
Translates to: TKPSHGLTTHPYTHHKQDHWPPS*FSLAGI
Trigger: TATACCAGCTAGAGAAAACCAGGAAGGAGGCCAGTG...GTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCCATGAGATGGCTTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp ACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATACCTGTCGCTGCCTTCCATaGGGGCTGGCAGAATGGTCT +
Preference number: 4 (lower is better)
Translates to: TIQTQVHKVENSLPCQNTCRCLP*GLAEWS
Trigger: AGACCATTCTGCCAGCCCCCATGGAAGGCAGCGACA...GGTATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CATACACACATCACAAACAGGACAGTCAAAACGGATATGTGGGATCACCTTTTAGAGTGGGTTCCTGGATaGAGGCCTGTCGCTGCCTTC +
Preference number: 4 (lower is better)
Translates to: HTHITNRTVKTDMWDHLLEWVPG*RPVAAF
Trigger: GAAGGCAGCGACAGGCCTCCATCCAGGAACCCACTC...TAAAAGGTGATCCCACATATCCGTTTTGACTGTCCTGTTTGTGATGTGTGTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GGGAACATGGATGACGACACAAAGCTGTTTCTCCTAGAAACACACGAACAAATAAGAAGAGTGGGTTCCTaGATGGAGGCCTGTCGCTGC +
Preference number: 4 (lower is better)
Translates to: GNMDDDTKLFLLETHEQIRRVGS*MEACRC
Trigger: GCAGCGACAGGCCTCCATCCAGGAACCCACTCTTCT...TATTTGTTCGTGTGTTTCTAGGAGAAACAGCTTTGTGTCGTCATCCATGTTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp TATGTGGGATCACCTTTTAGAGCCATGATTAAAAGCAAATCTGTAGCCCTTATAGCCAGGCGAAGACAGTaGACCCTGGGCAGGCTGAGG +
Preference number: 4 (lower is better)
Translates to: YVGSPFRAMIKSKSVALIARRRQ*TLGRLR
Trigger: CCTCAGCCTGCCCAGGGTCCACTGTCTTCGCCTGGC...TATAAGGGCTACAGATTTGCTTTTAATCATGGCTCTAAAAGGTGATCCCACATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp CATACACACATCACAAACAGGACAGTCAAAACGGATATGTGGGATCACCTTTTATGTCCGAGCTCTCTCTaGGCCTCTCCTTCCTTCGGC +
Preference number: 4 (lower is better)
Translates to: HTHITNRTVKTDMWDHLLCPSSL*ASPSFG
Trigger: GCCGAAGGAAGGAGAGGCCCAGAGAGAGCTCGGACA...TAAAAGGTGATCCCACATATCCGTTTTGACTGTCCTGTTTGTGATGTGTGTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp TGCCCCAGTGGTATCCTGACATACCTCAACCACATTAGCACTTCCAAGGTAAATCTGGCAGAATGGTCTTaGAGATGTCCAGGATCGCTT +
Preference number: 4 (lower is better)
Translates to: CPSGILTYLNHISTSKVNLAEWS*RCPGSL
Trigger: AAGCGATCCTGGACATCTCCAAGACCATTCTGCCAG...ATTTACCTTGGAAGTGCTAATGTGGTTGAGGTATGTCAGGATACCACTGGGGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp ACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATACCTGGGGGCTGGCAGAATaGTCTTGGAGATGTCCAGGA +
Preference number: 4 (lower is better)
Translates to: TIQTQVHKVENSLPCQNTWGLAE*SWRCPG
Trigger: TCCTGGACATCTCCAAGACCATTCTGCCAGCCCCCA...GGTATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp ACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATACCTTGGGGACAGAAGAGTaGGTTCCTGGATGGAGGCCT +
Preference number: 4 (lower is better)
Translates to: TIQTQVHKVENSLPCQNTLGTEE*VPGWRP
Trigger: AGGCCTCCATCCAGGAACCCACTCTTCTGTCCCCAA...GGTATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp ACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATACCTCCTGGGCTTCGTCCTaGGCCATCTTTATTGTCCCC +
Preference number: 4 (lower is better)
Translates to: TIQTQVHKVENSLPCQNTSWASS*AIFIVP
Trigger: GGGGACAATAAAGATGGCCCAGGACGAAGCCCAGGA...GGTATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GAAAACTCTCTCCCATGTCAGAATACCAATAGAATTCAGCCACAAAGTAGCCACTTGGCGGAGATGCTTTaGCAGAGCTGTTCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: ENSLPCQNTNRIQPQSSHLAEML*QSCSCR
Trigger: CCTGCAGGAACAGCTCTGCCAAAGCATCTCCGCCAA...GTGGCTACTTTGTGGCTGAATTCTATTGGTATTCTGACATGGGAGAGAGTTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp GGGAACATGGATGACGACACAAAGCTGTTTCTCCTAGAAACACACGAACAAATACTTTACTGCTCACTGTaGCACTGCCCCCATCCTCCA +
Preference number: 4 (lower is better)
Translates to: GNMDDDTKLFLLETHEQILYCSL*HCPHPP
Trigger: TGGAGGATGGGGGCAGTGCCACAGTGAGCAGTAAAG...TATTTGTTCGTGTGTTTCTAGGAGAAACAGCTTTGTGTCGTCATCCATGTTCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR TCA 90 bp TATGTGGGATCACCTTTTAGAGCCATGATTAAAAGCAAATCTGTAGCCCTTATAGTTGGCCTCTTTGGGTaGGACGCTCATGGCCCATGC +
Preference number: 4 (lower is better)
Translates to: YVGSPFRAMIKSKSVALIVGLFG*DAHGPC
Trigger: GCATGGGCCATGAGCGTCTCACCCAAAGAGGCCAAC...TATAAGGGCTACAGATTTGCTTTTAATCATGGCTCTAAAAGGTGATCCCACATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TATGTGGGATCACCTTTTAGAGCCATGATTAAAAGCAAATCTGTAGCCCTTATACAGAAGCTCCTGGGCTaGCCAAAGGCCTCCCATCTG +
Preference number: 4 (lower is better)
Translates to: YVGSPFRAMIKSKSVALIQKLLG*PKASHL
Trigger: CAGATGGGAGGCCTTTGGGCAGCCCAGGAGCTTCTG...TATAAGGGCTACAGATTTGCTTTTAATCATGGCTCTAAAAGGTGATCCCACATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TCATGGCCTCACTACTCACCCATACACACATCACAAACAGGACAGTCAAAACGGCACTGTCCAGAGAACTaGTCTTATCCTCAGAGCTTT +
Preference number: 4 (lower is better)
Translates to: SWPHYSPIHTSQTGQSKRHCPEN*SYPQSF
Trigger: AAAGCTCTGAGGATAAGAGCAGTTCTCTGGACAGTG...CCGTTTTGACTGTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCCATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp ACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATACCGTGGTGGGCTTAGGCTaGAAGTTTCTCTGCTGTGTG +
Preference number: 4 (lower is better)
Translates to: TIQTQVHKVENSLPCQNTVVGLG*KFLCCV
Trigger: CACACAGCAGAGAAACTTCCAGCCTAAGCCCACCAC...GGTATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp TTTACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATTCAGCACCCATGGGCTaGATAGCCTGCTCTGGTGTG +
Preference number: 4 (lower is better)
Translates to: FTIQTQVHKVENSLPCQNSAPMG*IACSGV
Trigger: CACACCAGAGCAGGCTATCCAGCCCATGGGTGCTGA...ATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp TATGTGGGATCACCTTTTAGAGCCATGATTAAAAGCAAATCTGTAGCCCTTATAGACCTCTCTGCACGTTaGCCTCTTTGGGTGAGACGC +
Preference number: 4 (lower is better)
Translates to: YVGSPFRAMIKSKSVALIDLSAR*PLWVRR
Trigger: GCGTCTCACCCAAAGAGGCCAACGTGCAGAGAGGTC...TATAAGGGCTACAGATTTGCTTTTAATCATGGCTCTAAAAGGTGATCCCACATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp TATGTGGGATCACCTTTTAGAGCCATGATTAAAAGCAAATCTGTAGCCCTTATACAGAACGGGGAGGCATaGGTTGGGGACAGAAGAGTG +
Preference number: 4 (lower is better)
Translates to: YVGSPFRAMIKSKSVALIQNGEA*VGDRRV
Trigger: CACTCTTCTGTCCCCAACCCATGCCTCCCCGTTCTG...TATAAGGGCTACAGATTTGCTTTTAATCATGGCTCTAAAAGGTGATCCCACATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp TATGTGGGATCACCTTTTAGAGCCATGATTAAAAGCAAATCTGTAGCCCTTATACCAAATACAGGGTTGTaGCCAGGCTGGGTCTCCCTG +
Preference number: 4 (lower is better)
Translates to: YVGSPFRAMIKSKSVALIPNTGL*PGWVSL
Trigger: CAGGGAGACCCAGCCTGGCCACAACCCTGTATTTGG...TATAAGGGCTACAGATTTGCTTTTAATCATGGCTCTAAAAGGTGATCCCACATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR TCA 90 bp TTTACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATCTGTGCTGCCAAATCTaGCCTTCTTACAGGAAGCCC +
Preference number: 4 (lower is better)
Translates to: FTIQTQVHKVENSLPCQNLCCQI*PSYRKP
Trigger: GGGCTTCCTGTAAGAAGGTCAGATTTGGCAGCACAG...ATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp ACCAAGCCATCTCATGGCCTCACTACTCACCCATACACACATCACAAACAGGACCACTTCGGGTTTTCATaGTGTCTTTTCTCATTAAGA +
Preference number: 4 (lower is better)
Translates to: TKPSHGLTTHPYTHHKQDHFGFS*CLFSLR
Trigger: TCTTAATGAGAAAAGACAGCATGAAAACCCGAAGTG...GTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCCATGAGATGGCTTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TTTACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATTGTGCCACCCATCTTTaGCTTCTCTGCCACACTGCT +
Preference number: 4 (lower is better)
Translates to: FTIQTQVHKVENSLPCQNCATHL*LLCHTA
Trigger: AGCAGTGTGGCAGAGAAGGCAAAGATGGGTGGCACA...ATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TTTACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATACCGAACACACTTTCTaGCGTTGCAGTCTGGCTTCC +
Preference number: 4 (lower is better)
Translates to: FTIQTQVHKVENSLPCQNTEHTF*RCSLAS
Trigger: GGAAGCCAGACTGCAACGGCAGAAAGTGTGTTCGGT...ATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CCA 90 bp TATGTGGGATCACCTTTTAGAGCCATGATTAAAAGCAAATCTGTAGCCCTTATACTTTCCTCTTTCAGCTaGCCTCTCAGAGGTGGGTCC +
Preference number: 4 (lower is better)
Translates to: YVGSPFRAMIKSKSVALILSSFS*PLRGGS
Trigger: GGACCCACCTCTGAGAGGCCAGCTGAAAGAGGAAAG...TATAAGGGCTACAGATTTGCTTTTAATCATGGCTCTAAAAGGTGATCCCACATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TCATGGCCTCACTACTCACCCATACACACATCACAAACAGGACAGTCAAAACGGCACTTCGGGTTTTCATaGTGTCTTTTCTCATTAAGA +
Preference number: 4 (lower is better)
Translates to: SWPHYSPIHTSQTGQSKRHFGFS*CLFSLR
Trigger: TCTTAATGAGAAAAGACAGCATGAAAACCCGAAGTG...CCGTTTTGACTGTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCCATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp ACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATACCCACTGTCCAGAGAACTaGTCTTATCCTCAGAGCTTT +
Preference number: 4 (lower is better)
Translates to: TIQTQVHKVENSLPCQNTHCPEN*SYPQSF
Trigger: AAAGCTCTGAGGATAAGAGCAGTTCTCTGGACAGTG...GGTATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp GAAAACTCTCTCCCATGTCAGAATACCAATAGAATTCAGCCACAAAGTAGCCACAGTTTCTCTGCTGTGTaGTCATCTTTGTTAACCTGG +
Preference number: 4 (lower is better)
Translates to: ENSLPCQNTNRIQPQSSHSFSAV*SSLLTW
Trigger: CCAGGTTAACAAAGATGAGCACACAGCAGAGAAACT...GTGGCTACTTTGTGGCTGAATTCTATTGGTATTCTGACATGGGAGAGAGTTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp CATACACACATCACAAACAGGACAGTCAAAACGGATATGTGGGATCACCTTTTACATCACTGTCAATGTTaGTGCTGTCACCTTCAGAAC +
Preference number: 4 (lower is better)
Translates to: HTHITNRTVKTDMWDHLLHHCQC*CCHLQN
Trigger: GTTCTGAAGGTGACAGCAGCAACATTGACAGTGATG...TAAAAGGTGATCCCACATATCCGTTTTGACTGTCCTGTTTGTGATGTGTGTATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR TCA 90 bp TATGTGGGATCACCTTTTAGAGCCATGATTAAAAGCAAATCTGTAGCCCTTATAGAGGTTTTCGGAAGATaGACTCCTTACACGTTCCCA +
Preference number: 4 (lower is better)
Translates to: YVGSPFRAMIKSKSVALIEVFGR*TPYTFP
Trigger: TGGGAACGTGTAAGGAGTTCATCTTCCGAAAACCTC...TATAAGGGCTACAGATTTGCTTTTAATCATGGCTCTAAAAGGTGATCCCACATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TTTACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATGGCTGGAAGTTTCTCTaGTGTGTGCTCATCTTTGTT +
Preference number: 4 (lower is better)
Translates to: FTIQTQVHKVENSLPCQNGWKFL*CVLIFV
Trigger: AACAAAGATGAGCACACAGCAGAGAAACTTCCAGCC...ATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR GCA 90 bp TATGTGGGATCACCTTTTAGAGCCATGATTAAAAGCAAATCTGTAGCCCTTATAAGTTTCTCTGCTGTGTaGTCATCTTTGTTAACCTGG +
Preference number: 4 (lower is better)
Translates to: YVGSPFRAMIKSKSVALISFSAV*SSLLTW
Trigger: CCAGGTTAACAAAGATGAGCACACAGCAGAGAAACT...TATAAGGGCTACAGATTTGCTTTTAATCATGGCTCTAAAAGGTGATCCCACATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 90 bp AGTGCTGGCTCACTTCGGCCCAGGGCAGTGGTGAGGCGGGCGGTCTaGTCAGCACGGAGGGTGCCCTTCCCAGACTGGCTCAAGAGGCCG +
Preference number: 5 (lower is better)
Translates to: SAGSLRPRAVVRRAV*SARRVPFPDWLKRP
Trigger: CGGCCTCTTGAGCCAGTCTGGGAAGGGCACCCTCCGTGCTGAGCAGACCGCCCGCCTCACCACTGCCCTGGGCCGAAGTGAGCCAGCACT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS TCA 90 bp CGTCACTGCTGGAGTCTGATGCCTGGTGCACTGGGGCCGAGCTCCTaGTGCGCTTGCTGCGCCTGGCAGGCATGCTCCTCCTCACCCCAC +
Preference number: 5 (lower is better)
Translates to: RHCWSLMPGALGPSS*CACCAWQACSSSPH
Trigger: GTGGGGTGAGGAGGAGCATGCCTGCCAGGCGCAGCAAGCGCATCAGGAGCTCGGCCCCAGTGCACCAGGCATCAGACTCCAGCAGTGACG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS TCA 90 bp CCAGCCTCGTGTCCCGGGACCTCTCTGCACGTTGGCCTCTTTGGGTaGGACGCTCATGGCCCATGCCCAGGGCAGCCTCGTCCCTCTGAA +
Preference number: 5 (lower is better)
Translates to: PASCPGTSLHVGLFG*DAHGPCPGQPRPSE
Trigger: TTCAGAGGGACGAGGCTGCCCTGGGCATGGGCCATGAGCGTCTCACCCAAAGAGGCCAACGTGCAGAGAGGTCCCGGGACACGAGGCTGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 90 bp GCATACAGCAGGCTTGGGGGCCAGCCTCGTGTCCCGGGACCTCTCTaGACGTTGGCCTCTTTGGGTGAGACGCTCATGGCCCATGCCCAG +
Preference number: 5 (lower is better)
Translates to: AYSRLGGQPRVPGPL*TLASLGETLMAHAQ
Trigger: CTGGGCATGGGCCATGAGCGTCTCACCCAAAGAGGCCAACGTGCAGAGAGGTCCCGGGACACGAGGCTGGCCCCCAAGCCTGCTGTATGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 90 bp AGGGCGCTGCAGTTTGCCACGAGACCACGGGCAGGGAACTCTGGCTaGTCTTTGCATACAGCAGGCTTGGGGGCCAGCCTCGTGTCCCGG +
Preference number: 5 (lower is better)
Translates to: RALQFATRPRAGNSG*SLHTAGLGASLVSR
Trigger: CCGGGACACGAGGCTGGCCCCCAAGCCTGCTGTATGCAAAGAGCAGCCAGAGTTCCCTGCCCGTGGTCTCGTGGCAAACTGCAGCGCCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 90 bp CTCAGCACGGAGGGTGCCCTTCCCAGACTGGCTCAAGAGGCCGGTTaGCTGTGTCCGAGCTCTCTCTGGGCCTCTCCTTCCTTCGGCCAG +
Preference number: 5 (lower is better)
Translates to: LSTEGALPRLAQEAG*LCPSSLWASPSFGQ
Trigger: CTGGCCGAAGGAAGGAGAGGCCCAGAGAGAGCTCGGACACAGGCAACCGGCCTCTTGAGCCAGTCTGGGAAGGGCACCCTCCGTGCTGAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 90 bp CTCCAGGGCGCTGCAGTTTGCCACGAGACCACGGGCAGGGAACTCTaGCTGCTCTTTGCATACAGCAGGCTTGGGGGCCAGCCTCGTGTC +
Preference number: 5 (lower is better)
Translates to: LQGAAVCHETTGREL*LLFAYSRLGGQPRV
Trigger: GACACGAGGCTGGCCCCCAAGCCTGCTGTATGCAAAGAGCAGCCAGAGTTCCCTGCCCGTGGTCTCGTGGCAAACTGCAGCGCCCTGGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 90 bp TGCAGTTTGCCACGAGACCACGGGCAGGGAACTCTGGCTGCTCTTTaGATACAGCAGGCTTGGGGGCCAGCCTCGTGTCCCGGGACCTCT +
Preference number: 5 (lower is better)
Translates to: CSLPRDHGQGTLAAL*IQQAWGPASCPGTS
Trigger: AGAGGTCCCGGGACACGAGGCTGGCCCCCAAGCCTGCTGTATGCAAAGAGCAGCCAGAGTTCCCTGCCCGTGGTCTCGTGGCAAACTGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp CATTGCAGAAAGCCATGCAGCCTGCTGGTGTCATCACTGGTCACCCACAGCAGCGGAGAAAGGCAGGGGTaGCGTCCTCGCCCCCTGTGC +
Preference number: 5 (lower is better)
Translates to: HCRKPCSLLVSSLVTHSSGERQG*RPRPLC
Trigger: GCACAGGGGGCGAGGACGCAACCCCTGCCTTTCTCC...GCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 90 bp GCTCCAAGGGACTGCGTCTCCCAGCTTCATCTTTCTCCAGGGCGCTaGAGTTTGCCACGAGACCACGGGCAGGGAACTCTGGCTGCTCTT +
Preference number: 5 (lower is better)
Translates to: APRDCVSQLHLSPGR*SLPRDHGQGTLAAL
Trigger: AAGAGCAGCCAGAGTTCCCTGCCCGTGGTCTCGTGGCAAACTGCAGCGCCCTGGAGAAAGATGAAGCTGGGAGACGCAGTCCCTTGGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 90 bp GGCAAGGCGTTTGGCTGGGCACTACCAGGGCTTTCCTCTTTCAGCTaGCCTCTCAGAGGTGGGTCCCCACTGGCCTCCTTCCTGGTTTTC +
Preference number: 5 (lower is better)
Translates to: GKAFGWALPGLSSFS*PLRGGSPLASFLVF
Trigger: GAAAACCAGGAAGGAGGCCAGTGGGGACCCACCTCTGAGAGGCCAGCTGAAAGAGGAAAGCCCTGGTAGTGCCCAGCCAAACGCCTTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 90 bp TCCACTGCACTGTCCTCAGATGTGGGGCTGGAGGCTGAAGGAGGGTaGCCACTGGCTCCTGTGTCTGTAGAGGGAAGAGCCCCTTCTGGA +
Preference number: 5 (lower is better)
Translates to: STALSSDVGLEAEGG*PLAPVSVEGRAPSG
Trigger: TCCAGAAGGGGCTCTTCCCTCTACAGACACAGGAGCCAGTGGCCACCCTCCTTCAGCCTCCAGCCCCACATCTGAGGACAGTGCAGTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 90 bp GCCCCCTGTGCCACCCATCTTTGCCTTCTCTGCCACACTGCTTCCTaGGCTTCGTCCTGGGCCATCTTTATTGTCCCCTCTGCACTTGGG +
Preference number: 5 (lower is better)
Translates to: APCATHLCLLCHTAS*ASSWAIFIVPSALG
Trigger: CCCAAGTGCAGAGGGGACAATAAAGATGGCCCAGGACGAAGCCCAGGAAGCAGTGTGGCAGAGAAGGCAAAGATGGGTGGCACAGGGGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GCCTTCTTTCTCCTGGGTAGAGGCAGCATTGCAGAAAGCCATGCAGCCTGCTGGCTTCAGGCAAGGCGTTaGGCTGGGCACTACCAGGGC +
Preference number: 5 (lower is better)
Translates to: AFFLLGRGSIAESHAACWLQARR*AGHYQG
Trigger: GCCCTGGTAGTGCCCAGCCAAACGCCTTGCCTGAAG...CCAGCAGGCTGCATGGCTTTCTGCAATGCTGCCTCTACCCAGGAGAAAGAAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp CCTGCTGGTGTCATCACTGGTCACCCACAGCAGCTGTGGGAGGGTTTGCCCTCAGGGGTCTCTGTGATTTaGTTGTGCCCGAGAGGGTCC +
Preference number: 5 (lower is better)
Translates to: PAGVITGHPQQLWEGLPSGVSVI*LCPRGS
Trigger: GGACCCTCTCGGGCACAACAAAATCACAGAGACCCC...TGAGGGCAAACCCTCCCACAGCTGCTGTGGGTGACCAGTGATGACACCAGCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp CATTGCAGAAAGCCATGCAGCCTGCTGGTGTCATCACTGGTCACCCACAGCAGCCAGTCCCCTGGAAGGTaGCTCGGCTTCTCCCCACAC +
Preference number: 5 (lower is better)
Translates to: HCRKPCSLLVSSLVTHSSQSPGR*LGFSPH
Trigger: GTGTGGGGAGAAGCCGAGCAACCTTCCAGGGGACTG...GCTGCTGTGGGTGACCAGTGATGACACCAGCAGGCTGCATGGCTTTCTGCAATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 90 bp GAGCACTTTTCCTGCTTGGCGGAGATGCTTTGGCAGAGCTGTTCCTaGAGGTGTTCTTGGGTAGTGCTGGCTCACTTCGGCCCAGGGCAG +
Preference number: 5 (lower is better)
Translates to: EHFSCLAEMLWQSCS*RCSWVVLAHFGPGQ
Trigger: CTGCCCTGGGCCGAAGTGAGCCAGCACTACCCAAGAACACCTGCAGGAACAGCTCTGCCAAAGCATCTCCGCCAAGCAGGAAAAGTGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 90 bp GAGTGGGTTCCTGGATGGAGGCCTGTCGCTGCCTTCCATGGGGGCTaGCAGAATGGTCTTGGAGATGTCCAGGATCGCTTCTGCACACAT +
Preference number: 5 (lower is better)
Translates to: EWVPGWRPVAAFHGG*QNGLGDVQDRFCTH
Trigger: ATGTGTGCAGAAGCGATCCTGGACATCTCCAAGACCATTCTGCCAGCCCCCATGGAAGGCAGCGACAGGCCTCCATCCAGGAACCCACTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp TCAGCACCAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTGCCTGCGGTCGCTGGCAGAATGGTCTaGGAGATGTCCAGGATCGCT +
Preference number: 5 (lower is better)
Translates to: SAPRQYHCQTPRTPVPAVAGRMV*EMSRIA
Trigger: AGCGATCCTGGACATCTCCAAGACCATTCTGCCAGC...GACCGCAGGCACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp ACAGGCACCTCAGCACCAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTGCTGTGCCACCCATCTTaGCCTTCTCTGCCACACTGC +
Preference number: 5 (lower is better)
Translates to: TGTSAPRQYHCQTPRTPVLCHPS*PSLPHC
Trigger: GCAGTGTGGCAGAGAAGGCAAAGATGGGTGGCACAG...CACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGAGGTGCCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 90 bp CTTTTTCTTGCTAGGGGGTCTCCTGTGGGCTTCAGGCAAGGCGTTTaGCTGGGCACTACCAGGGCTTTCCTCTTTCAGCTGGCCTCTCAG +
Preference number: 5 (lower is better)
Translates to: LFLARGSPVGFRQGV*LGTTRAFLFQLASQ
Trigger: CTGAGAGGCCAGCTGAAAGAGGAAAGCCCTGGTAGTGCCCAGCCAAACGCCTTGCCTGAAGCCCACAGGAGACCCCCTAGCAAGAAAAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GCCTTCTTTCTCCTGGGTAGAGGCAGCATTGCAGAAAGCCATGCAGCCTGCTGGCAGAAGCCCCACCCCTaGCCTTCAGGTACTCTTGGA +
Preference number: 5 (lower is better)
Translates to: AFFLLGRGSIAESHAACWQKPHP*PSGTLG
Trigger: TCCAAGAGTACCTGAAGGCAAGGGGTGGGGCTTCTG...CCAGCAGGCTGCATGGCTTTCTGCAATGCTGCCTCTACCCAGGAGAAAGAAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp ACAGGCACCTCAGCACCAAGGCAGTATCACTGCCAAACTCCCAGGACCCCAGTGGTCTCTGTGATTTTGTaGTGCCCGAGAGGGTCCCAC +
Preference number: 5 (lower is better)
Translates to: TGTSAPRQYHCQTPRTPVVSVIL*CPRGSH
Trigger: GTGGGACCCTCTCGGGCACAACAAAATCACAGAGAC...CACTGGGGTCCTGGGAGTTTGGCAGTGATACTGCCTTGGTGCTGAGGTGCCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GCCTTCTTTCTCCTGGGTAGAGGCAGCATTGCAGAAAGCCATGCAGCCTGCTGGCTGTGCCACCCATCTTaGCCTTCTCTGCCACACTGC +
Preference number: 5 (lower is better)
Translates to: AFFLLGRGSIAESHAACWLCHPS*PSLPHC
Trigger: GCAGTGTGGCAGAGAAGGCAAAGATGGGTGGCACAG...CCAGCAGGCTGCATGGCTTTCTGCAATGCTGCCTCTACCCAGGAGAAAGAAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACCCAGGGGAGAAAGGCAGGGGTaGCGTCCTCGCCCCCTGTGC +
Preference number: 5 (lower is better)
Translates to: GWLECVPAFGHFLQFRPRGERQG*RPRPLC
Trigger: GCACAGGGGGCGAGGACGCAACCCCTGCCTTTCTCC...CCTGGGTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 90 bp GGCACCCACTTTGGCACAACTGGGCAGCTGACCGAACACACTTTCTaGCGTTGCAGTCTGGCTTCCCTGTGGGCTATGGTCTTTGTGAAC +
Preference number: 5 (lower is better)
Translates to: GTHFGTTGQLTEHTF*RCSLASLWAMVFVN
Trigger: GTTCACAAAGACCATAGCCCACAGGGAAGCCAGACTGCAACGGCAGAAAGTGTGTTCGGTCAGCTGCCCAGTTGTGCCAAAGTGGGTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 90 bp TTCCTGGGCTTCGTCCTGGGCCATCTTTATTGTCCCCTCTGCACTTaGGCAGACAGCTCCGTAGTGCCTGCTGTCTGTGGTCTTTCCAGT +
Preference number: 5 (lower is better)
Translates to: FLGFVLGHLYCPLCT*ADSSVVPAVCGLSS
Trigger: ACTGGAAAGACCACAGACAGCAGGCACTACGGAGCTGTCTGCCCAAGTGCAGAGGGGACAATAAAGATGGCCCAGGACGAAGCCCAGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp CCACAACGGGACCACAGAGCCTGCCACCACATCAAAGTTCCAACGTGGCAGATGACAGCCAGCTTTTTCTaGCTAGGGGGTCTCCTGTGG +
Preference number: 5 (lower is better)
Translates to: PQRDHRACHHIKVPTWQMTASFF*LGGLLW
Trigger: CCACAGGAGACCCCCTAGCAAGAAAAAGCTGGCTGT...CATCTGCCACGTTGGAACTTTGATGTGGTGGCAGGCTCTGTGGTCCCGTTGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GCCTTCTTTCTCCTGGGTAGAGGCAGCATTGCAGAAAGCCATGCAGCCTGCTGGGCTGGCAGAATGGTCTaGGAGATGTCCAGGATCGCT +
Preference number: 5 (lower is better)
Translates to: AFFLLGRGSIAESHAACWAGRMV*EMSRIA
Trigger: AGCGATCCTGGACATCTCCAAGACCATTCTGCCAGC...CCAGCAGGCTGCATGGCTTTCTGCAATGCTGCCTCTACCCAGGAGAAAGAAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp TTGCTGCGATCTCCAGGCCTGAATATCTTCACAAGCAAAGCGGTTCCAGCCTCTGGCTCAAGAGGCCGGTaGCCTGTGTCCGAGCTCTCT +
Preference number: 5 (lower is better)
Translates to: LLRSPGLNIFTSKAVPASGSRGR*PVSELS
Trigger: AGAGAGCTCGGACACAGGCAACCGGCCTCTTGAGCC...AGAGGCTGGAACCGCTTTGCTTGTGAAGATATTCAGGCCTGGAGATCGCAGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 90 bp CACTTTGGCACAACTGGGCAGCTGACCGAACACACTTTCTGCCGTTaGAGTCTGGCTTCCCTGTGGGCTATGGTCTTTGTGAACGTGAGC +
Preference number: 5 (lower is better)
Translates to: HFGTTGQLTEHTFCR*SLASLWAMVFVNVS
Trigger: GCTCACGTTCACAAAGACCATAGCCCACAGGGAAGCCAGACTGCAACGGCAGAAAGTGTGTTCGGTCAGCTGCCCAGTTGTGCCAAAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 90 bp CAGCTGACCGAACACACTTTCTGCCGTTGCAGTCTGGCTTCCCTGTaGGCTATGGTCTTTGTGAACGTGAGCACTTTTCCTGCTTGGCGG +
Preference number: 5 (lower is better)
Translates to: QLTEHTFCRCSLASL*AMVFVNVSTFPAWR
Trigger: CCGCCAAGCAGGAAAAGTGCTCACGTTCACAAAGACCATAGCCCACAGGGAAGCCAGACTGCAACGGCAGAAAGTGTGTTCGGTCAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GGGGAGGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACCTTCAGGCAAGGCGTTaGGCTGGGCACTACCAGGGC +
Preference number: 5 (lower is better)
Translates to: GEDGWSVCQHLGTFYNSDLQARR*AGHYQG
Trigger: GCCCTGGTAGTGCCCAGCCAAACGCCTTGCCTGAAG...GTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCCTCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS TCA 90 bp TCGGAAGATGAACTCCTTACACGTTCCCATCAGAGCTGCCCTGGCTaGGGTTTCTCGGTTCCCTCTAAGTCTGGCAGGGCTGTTGTTTGG +
Preference number: 5 (lower is better)
Translates to: SEDELLTRSHQSCPG*GFSVPSKSGRAVVW
Trigger: CCAAACAACAGCCCTGCCAGACTTAGAGGGAACCGAGAAACCTCAGCCAGGGCAGCTCTGATGGGAACGTGTAAGGAGTTCATCTTCCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS TCA 90 bp GTTGGGTCTTTCCTACAGGGCATCTCTGGCTTGGCAGGTCCCCCTTaGGGTTCTGTGTTGCGTATAGACTCCTTGGCCTTCTCTGCCAAA +
Preference number: 5 (lower is better)
Translates to: VGSFLQGISGLAGPP*GSVLRIDSLAFSAK
Trigger: TTTGGCAGAGAAGGCCAAGGAGTCTATACGCAACACAGAACCTCAAGGGGGACCTGCCAAGCCAGAGATGCCCTGTAGGAAAGACCCAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 90 bp GGCTTCCCTGTGGGCTATGGTCTTTGTGAACGTGAGCACTTTTCCTaGTTGGCGGAGATGCTTTGGCAGAGCTGTTCCTGCAGGTGTTCT +
Preference number: 5 (lower is better)
Translates to: GFPVGYGLCEREHFS*LAEMLWQSCSCRCS
Trigger: AGAACACCTGCAGGAACAGCTCTGCCAAAGCATCTCCGCCAAGCAGGAAAAGTGCTCACGTTCACAAAGACCATAGCCCACAGGGAAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 90 bp AGCTTCGTGCTCACTGGGGTCTCAGGCTCTGTGGTGGGCTTAGGCTaGAAGTTTCTCTGCTGTGTGCTCATCTTTGTTAACCTGGGAGGT +
Preference number: 5 (lower is better)
Translates to: SFVLTGVSGSVVGLG*KFLCCVLIFVNLGG
Trigger: ACCTCCCAGGTTAACAAAGATGAGCACACAGCAGAGAAACTTCCAGCCTAAGCCCACCACAGAGCCTGAGACCCCAGTGAGCACGAAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 90 bp GGTCTTTGTGAACGTGAGCACTTTTCCTGCTTGGCGGAGATGCTTTaGCAGAGCTGTTCCTGCAGGTGTTCTTGGGTAGTGCTGGCTCAC +
Preference number: 5 (lower is better)
Translates to: GLCEREHFSCLAEML*QSCSCRCSWVVLAH
Trigger: GTGAGCCAGCACTACCCAAGAACACCTGCAGGAACAGCTCTGCCAAAGCATCTCCGCCAAGCAGGAAAAGTGCTCACGTTCACAAAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 90 bp TCCCTGTGGGCTATGGTCTTTGTGAACGTGAGCACTTTTCCTGCTTaGCGGAGATGCTTTGGCAGAGCTGTTCCTGCAGGTGTTCTTGGG +
Preference number: 5 (lower is better)
Translates to: SLWAMVFVNVSTFPA*RRCFGRAVPAGVLG
Trigger: CCCAAGAACACCTGCAGGAACAGCTCTGCCAAAGCATCTCCGCCAAGCAGGAAAAGTGCTCACGTTCACAAAGACCATAGCCCACAGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 90 bp CAAAGTCACTCCAAGGAAGGACGAGGTCAGCCTGGGACCCAGGGTTaGGGGTTAGCAAGTTCTGACTGCCATAGTTCAGGTGAAAGGTAC +
Preference number: 5 (lower is better)
Translates to: QSHSKEGRGQPGTQG*GLASSDCHSSGERY
Trigger: GTACCTTTCACCTGAACTATGGCAGTCAGAACTTGCTAACCCCCAACCCTGGGTCCCAGGCTGACCTCGTCCTTCCTTGGAGTGACTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GCATGCATGCACACACATCAGGCAAGACACGGACACTGCTTCCCACAGCCATGGCTGAGGACTCCCTACTaGTGCCTTGAGAGCCAAAAA +
Preference number: 5 (lower is better)
Translates to: ACMHTHQARHGHCFPQPWLRTPY*CLESQK
Trigger: TTTTTGGCTCTCAAGGCACAAGTAGGGAGTCCTCAG...CCATGGCTGTGGGAAGCAGTGTCCGTGTCTTGCCTGATGTGTGTGCATGCATGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACCCAGGCAGAAGCCCCACCCCTaGCCTTCAGGTACTCTTGGA +
Preference number: 5 (lower is better)
Translates to: GWLECVPAFGHFLQFRPRQKPHP*PSGTLG
Trigger: TCCAAGAGTACCTGAAGGCAAGGGGTGGGGCTTCTG...CCTGGGTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp ATTACAGGTCATGACTACAGAATCCAGGGACACCCTTGCCCCAGTGGTATCCTGCCTCTCCGTTTCCGTTaGCAGACCAGAGGGAGATCT +
Preference number: 5 (lower is better)
Translates to: ITGHDYRIQGHPCPSGILPLRFR*QTRGRS
Trigger: AGATCTCCCTCTGGTCTGCAAACGGAAACGGAGAGG...CAGGATACCACTGGGGCAAGGGTGTCCCTGGATTCTGTAGTCATGACCTGTAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GATGTAATCTTCACATCTGGGCTCCAGCACATCTTCAGTTCCCAGTTGCCACAGTTGTCCCCTCTGCACTaGGGCAGACAGCTCCGTAGT +
Preference number: 5 (lower is better)
Translates to: DVIFTSGLQHIFSSQLPQLSPLH*GRQLRS
Trigger: ACTACGGAGCTGTCTGCCCAAGTGCAGAGGGGACAA...CTGTGGCAACTGGGAACTGAAGATGTGCTGGAGCCCAGATGTGAAGATTACATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GGGGAGGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACTTGTCCCCTCTGCACTaGGGCAGACAGCTCCGTAGT +
Preference number: 5 (lower is better)
Translates to: GEDGWSVCQHLGTFYNSDLSPLH*GRQLRS
Trigger: ACTACGGAGCTGTCTGCCCAAGTGCAGAGGGGACAA...GTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCCTCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp TTGCTGCGATCTCCAGGCCTGAATATCTTCACAAGCAAAGCGGTTCCAGCCTCTGAGCACTTTTCCTGCTaGGCGGAGATGCTTTGGCAG +
Preference number: 5 (lower is better)
Translates to: LLRSPGLNIFTSKAVPASEHFSC*AEMLWQ
Trigger: CTGCCAAAGCATCTCCGCCAAGCAGGAAAAGTGCTC...AGAGGCTGGAACCGCTTTGCTTGTGAAGATATTCAGGCCTGGAGATCGCAGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GGGGAGGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACCTTCCAAATACAGGGTaGTGGCCAGGCTGGGTCTCC +
Preference number: 5 (lower is better)
Translates to: GEDGWSVCQHLGTFYNSDLPNTG*WPGWVS
Trigger: GGAGACCCAGCCTGGCCACAACCCTGTATTTGGAAG...GTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCCTCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GATGTAATCTTCACATCTGGGCTCCAGCACATCTTCAGTTCCCAGTTGCCACAGATTCCTCCTGTCCTGTaGTCTCAGGGTCCCCTGAGC +
Preference number: 5 (lower is better)
Translates to: DVIFTSGLQHIFSSQLPQIPPVL*SQGPLS
Trigger: GCTCAGGGGACCCTGAGACAACAGGACAGGAGGAAT...CTGTGGCAACTGGGAACTGAAGATGTGCTGGAGCCCAGATGTGAAGATTACATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 90 bp ACTGGGGTCTCAGGCTCTGTGGTGGGCTTAGGCTGGAAGTTTCTCTaGTGTGTGCTCATCTTTGTTAACCTGGGAGGTTTTCGGAAGATG +
Preference number: 5 (lower is better)
Translates to: TGVSGSVVGLGWKFL*CVLIFVNLGGFRKM
Trigger: CATCTTCCGAAAACCTCCCAGGTTAACAAAGATGAGCACACAGCAGAGAAACTTCCAGCCTAAGCCCACCACAGAGCCTGAGACCCCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GCATGCATGCACACACATCAGGCAAGACACGGACACTGCTTCCCACAGCCATGGCACCTCTTCTTAAACTaGCGCTTGGATCTTAGCAAG +
Preference number: 5 (lower is better)
Translates to: ACMHTHQARHGHCFPQPWHLFLN*RLDLSK
Trigger: CTTGCTAAGATCCAAGCGCAAGTTTAAGAAGAGGTG...CCATGGCTGTGGGAAGCAGTGTCCGTGTCTTGCCTGATGTGTGTGCATGCATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACCCAGGGAGCACTTTTCCTGCTaGGCGGAGATGCTTTGGCAG +
Preference number: 5 (lower is better)
Translates to: GWLECVPAFGHFLQFRPREHFSC*AEMLWQ
Trigger: CTGCCAAAGCATCTCCGCCAAGCAGGAAAAGTGCTC...CCTGGGTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp TCATGGCCTCACTACTCACCCATACACACATCACAAACAGGACAGTCAAAACGGATTCCTCCTGTCCTGTaGTCTCAGGGTCCCCTGAGC +
Preference number: 5 (lower is better)
Translates to: SWPHYSPIHTSQTGQSKRIPPVL*SQGPLS
Trigger: GCTCAGGGGACCCTGAGACAACAGGACAGGAGGAAT...CCGTTTTGACTGTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCCATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp TTAGGACCACAACGGGACCACAGAGCCTGCCACCACATCAAAGTTCCAACGTGGTCATCACTGTCAATGTaGCTGCTGTCACCTTCAGAA +
Preference number: 5 (lower is better)
Translates to: LGPQRDHRACHHIKVPTWSSLSM*LLSPSE
Trigger: TTCTGAAGGTGACAGCAGCAACATTGACAGTGATGA...CCACGTTGGAACTTTGATGTGGTGGCAGGCTCTGTGGTCCCGTTGTGGTCCTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GGCCTCACTACTCACCCATACACACATCACAAACAGGACAGTCAAAACGGATATTTAGCAAAAGGGACCTaGGGGATGCCAGGCTGGCCA +
Preference number: 5 (lower is better)
Translates to: GLTTHPYTHHKQDSQNGYLAKGT*GMPGWP
Trigger: TGGCCAGCCTGGCATCCCCAAGGTCCCTTTTGCTAA...ATATCCGTTTTGACTGTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp TGCCCCAGTGGTATCCTGACATACCTCAACCACATTAGCACTTCCAAGGTAAATTTAGCAAAAGGGACCTaGGGGATGCCAGGCTGGCCA +
Preference number: 5 (lower is better)
Translates to: CPSGILTYLNHISTSKVNLAKGT*GMPGWP
Trigger: TGGCCAGCCTGGCATCCCCAAGGTCCCTTTTGCTAA...ATTTACCTTGGAAGTGCTAATGTGGTTGAGGTATGTCAGGATACCACTGGGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp ACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATACCGGCTCAAGAGGCCGGTaGCCTGTGTCCGAGCTCTCT +
Preference number: 5 (lower is better)
Translates to: TIQTQVHKVENSLPCQNTGSRGR*PVSELS
Trigger: AGAGAGCTCGGACACAGGCAACCGGCCTCTTGAGCC...GGTATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GGCCTCACTACTCACCCATACACACATCACAAACAGGACAGTCAAAACGGATATCTTCCAAATACAGGGTaGTGGCCAGGCTGGGTCTCC +
Preference number: 5 (lower is better)
Translates to: GLTTHPYTHHKQDSQNGYLPNTG*WPGWVS
Trigger: GGAGACCCAGCCTGGCCACAACCCTGTATTTGGAAG...ATATCCGTTTTGACTGTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS TCA 90 bp TCTGCTGTGTGCTCATCTTTGTTAACCTGGGAGGTTTTCGGAAGATaGACTCCTTACACGTTCCCATCAGAGCTGCCCTGGCTGAGGTTT +
Preference number: 5 (lower is better)
Translates to: SAVCSSLLTWEVFGR*TPYTFPSELPWLRF
Trigger: AAACCTCAGCCAGGGCAGCTCTGATGGGAACGTGTAAGGAGTTCATCTTCCGAAAACCTCCCAGGTTAACAAAGATGAGCACACAGCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GGGGAGGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACCTGAGGACTCCCTACTaGTGCCTTGAGAGCCAAAAA +
Preference number: 5 (lower is better)
Translates to: GEDGWSVCQHLGTFYNSDLRTPY*CLESQK
Trigger: TTTTTGGCTCTCAAGGCACAAGTAGGGAGTCCTCAG...GTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCCTCCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp CTCAGGGAAGACAGGTGGAATCACAACACAGATGTAATCTTCACATCTGGGCTCCCCTCCCTTATTTTCTaGGGCATTGTAGTGCTGCCT +
Preference number: 5 (lower is better)
Translates to: LREDRWNHNTDVIFTSGLPSLIF*GIVVLP
Trigger: AGGCAGCACTACAATGCCCAAGAAAATAAGGGAGGG...GAGCCCAGATGTGAAGATTACATCTGTGTTGTGATTCCACCTGTCTTCCCTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp ACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATACCGGGGTCTCTGTGATTTaGTTGTGCCCGAGAGGGTCC +
Preference number: 5 (lower is better)
Translates to: TIQTQVHKVENSLPCQNTGVSVI*LCPRGS
Trigger: GGACCCTCTCGGGCACAACAAAATCACAGAGACCCC...GGTATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp ATGATCCCCTACTTCCACCCTATGCTGCCTAACACACAGGCACACTCTCTCTCTCACCTCTTCTTAAACTaGCGCTTGGATCTTAGCAAG +
Preference number: 5 (lower is better)
Translates to: MIPYFHPMLPNTQAHSLSHLFLN*RLDLSK
Trigger: CTTGCTAAGATCCAAGCGCAAGTTTAAGAAGAGGTG...AGAGAGAGAGTGTGCCTGTGTGTTAGGCAGCATAGGGTGGAAGTAGGGGATCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GGGGAGGATGGTTGGAGTGTGTGCCAGCATTTGGGCACTTTTTACAATTCAGACTTGCGTATAGACTCCTaGGCCTTCTCTGCCAAAAAC +
Preference number: 5 (lower is better)
Translates to: GEDGWSVCQHLGTFYNSDLRIDS*AFSAKN
Trigger: GTTTTTGGCAGAGAAGGCCAAGGAGTCTATACGCAA...GTCTGAATTGTAAAAAGTGCCCAAATGCTGGCACACACTCCAACCATCCTCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp TGCCCCAGTGGTATCCTGACATACCTCAACCACATTAGCACTTCCAAGGTAAATTTCCTGCAGGTGTTCTaGGGTAGTGCTGGCTCACTT +
Preference number: 5 (lower is better)
Translates to: CPSGILTYLNHISTSKVNFLQVF*GSAGSL
Trigger: AAGTGAGCCAGCACTACCCAAGAACACCTGCAGGAA...ATTTACCTTGGAAGTGCTAATGTGGTTGAGGTATGTCAGGATACCACTGGGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GATGTAATCTTCACATCTGGGCTCCAGCACATCTTCAGTTCCCAGTTGCCACAGTCATCACTGTCAATGTaGCTGCTGTCACCTTCAGAA +
Preference number: 5 (lower is better)
Translates to: DVIFTSGLQHIFSSQLPQSSLSM*LLSPSE
Trigger: TTCTGAAGGTGACAGCAGCAACATTGACAGTGATGA...CTGTGGCAACTGGGAACTGAAGATGTGCTGGAGCCCAGATGTGAAGATTACATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GGGAACATGGATGACGACACAAAGCTGTTTCTCCTAGAAACACACGAACAAATAGTCTCTGTGATTTTGTaGTGCCCGAGAGGGTCCCAC +
Preference number: 5 (lower is better)
Translates to: GNMDDDTKLFLLETHEQIVSVIL*CPRGSH
Trigger: GTGGGACCCTCTCGGGCACAACAAAATCACAGAGAC...TATTTGTTCGTGTGTTTCTAGGAGAAACAGCTTTGTGTCGTCATCCATGTTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp TATGTGGGATCACCTTTTAGAGCCATGATTAAAAGCAAATCTGTAGCCCTTATACAGTCCCCTGGAAGGTaGCTCGGCTTCTCCCCACAC +
Preference number: 5 (lower is better)
Translates to: YVGSPFRAMIKSKSVALIQSPGR*LGFSPH
Trigger: GTGTGGGGAGAAGCCGAGCAACCTTCCAGGGGACTG...TATAAGGGCTACAGATTTGCTTTTAATCATGGCTCTAAAAGGTGATCCCACATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp TCATGGCCTCACTACTCACCCATACACACATCACAAACAGGACAGTCAAAACGGCTCAGGTCTAGAACTTaGTCCTCAGAGGCAGAATTC +
Preference number: 5 (lower is better)
Translates to: SWPHYSPIHTSQTGQSKRLRSRT*SSEAEF
Trigger: GAATTCTGCCTCTGAGGACAAAGTTCTAGACCTGAG...CCGTTTTGACTGTCCTGTTTGTGATGTGTGTATGGGTGAGTAGTGAGGCCATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GGGAACATGGATGACGACACAAAGCTGTTTCTCCTAGAAACACACGAACAAATACTCCCTACTTGTGCCTaGAGAGCCAAAAACGTTCGG +
Preference number: 5 (lower is better)
Translates to: GNMDDDTKLFLLETHEQILPTCA*RAKNVR
Trigger: CCGAACGTTTTTGGCTCTCAAGGCACAAGTAGGGAG...TATTTGTTCGTGTGTTTCTAGGAGAAACAGCTTTGTGTCGTCATCCATGTTCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GAAAACTCTCTCCCATGTCAGAATACCAATAGAATTCAGCCACAAAGTAGCCACTTCCTGCAGGTGTTCTaGGGTAGTGCTGGCTCACTT +
Preference number: 5 (lower is better)
Translates to: ENSLPCQNTNRIQPQSSHFLQVF*GSAGSL
Trigger: AAGTGAGCCAGCACTACCCAAGAACACCTGCAGGAA...GTGGCTACTTTGTGGCTGAATTCTATTGGTATTCTGACATGGGAGAGAGTTTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp TTTACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATCCTCTCCGTTTCCGTTaGCAGACCAGAGGGAGATCT +
Preference number: 5 (lower is better)
Translates to: FTIQTQVHKVENSLPCQNPLRFR*QTRGRS
Trigger: AGATCTCCCTCTGGTCTGCAAACGGAAACGGAGAGG...ATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp GGGAACATGGATGACGACACAAAGCTGTTTCTCCTAGAAACACACGAACAAATACCCTCCCTTATTTTCTaGGGCATTGTAGTGCTGCCT +
Preference number: 5 (lower is better)
Translates to: GNMDDDTKLFLLETHEQIPSLIF*GIVVLP
Trigger: AGGCAGCACTACAATGCCCAAGAAAATAAGGGAGGG...TATTTGTTCGTGTGTTTCTAGGAGAAACAGCTTTGTGTCGTCATCCATGTTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp TATGTGGGATCACCTTTTAGAGCCATGATTAAAAGCAAATCTGTAGCCCTTATACTCCCTACTTGTGCCTaGAGAGCCAAAAACGTTCGG +
Preference number: 5 (lower is better)
Translates to: YVGSPFRAMIKSKSVALILPTCA*RAKNVR
Trigger: CCGAACGTTTTTGGCTCTCAAGGCACAAGTAGGGAG...TATAAGGGCTACAGATTTGCTTTTAATCATGGCTCTAAAAGGTGATCCCACATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp TTTACAATTCAGACCCAGGTGCATAAAGTAGAAAACTCTCTCCCATGTCAGAATTTGCGTATAGACTCCTaGGCCTTCTCTGCCAAAAAC +
Preference number: 5 (lower is better)
Translates to: FTIQTQVHKVENSLPCQNLRIDS*AFSAKN
Trigger: GTTTTTGGCAGAGAAGGCCAAGGAGTCTATACGCAA...ATTCTGACATGGGAGAGAGTTTTCTACTTTATGCACCTGGGTCTGAATTGTAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS-3UTR CAA 90 bp TATGTGGGATCACCTTTTAGAGCCATGATTAAAAGCAAATCTGTAGCCCTTATACTCAGGTCTAGAACTTaGTCCTCAGAGGCAGAATTC +
Preference number: 5 (lower is better)
Translates to: YVGSPFRAMIKSKSVALILRSRT*SSEAEF
Trigger: GAATTCTGCCTCTGAGGACAAAGTTCTAGACCTGAG...TATAAGGGCTACAGATTTGCTTTTAATCATGGCTCTAAAAGGTGATCCCACATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS TCA 72 bp TGGGTAGTGCTGGCTCACTTCGGCCCAGGGCAGTGGTaGGGCGGGCGGTCTGCTCAGCACGGAGGGTGCCCT +
Preference number: 6 (lower is better)
Translates to: WVVLAHFGPGQW*GGRSAQHGGCP
Trigger: AGGGCACCCTCCGTGCTGAGCAGACCGCCCGCCTCACCACTGCCCTGGGCCGAAGTGAGCCAGCACTACCCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 72 bp TCACTTCGGCCCAGGGCAGTGGTGAGGCGGGCGGTCTaGTCAGCACGGAGGGTGCCCTTCCCAGACTGGCTC +
Preference number: 6 (lower is better)
Translates to: SLRPRAVVRRAV*SARRVPFPDWL
Trigger: GAGCCAGTCTGGGAAGGGCACCCTCCGTGCTGAGCAGACCGCCCGCCTCACCACTGCCCTGGGCCGAAGTGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 72 bp GGGGCCAGCCTCGTGTCCCGGGACCTCTCTGCACGTTaGCCTCTTTGGGTGAGACGCTCATGGCCCATGCCC +
Preference number: 6 (lower is better)
Translates to: GASLVSRDLSAR*PLWVRRSWPMP
Trigger: GGGCATGGGCCATGAGCGTCTCACCCAAAGAGGCCAACGTGCAGAGAGGTCCCGGGACACGAGGCTGGCCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS TCA 72 bp TGGAGTCTGATGCCTGGTGCACTGGGGCCGAGCTCCTaGTGCGCTTGCTGCGCCTGGCAGGCATGCTCCTCC +
Preference number: 6 (lower is better)
Translates to: WSLMPGALGPSS*CACCAWQACSS
Trigger: GGAGGAGCATGCCTGCCAGGCGCAGCAAGCGCATCAGGAGCTCGGCCCCAGTGCACCAGGCATCAGACTCCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 72 bp AGGCTTGGGGGCCAGCCTCGTGTCCCGGGACCTCTCTaGACGTTGGCCTCTTTGGGTGAGACGCTCATGGCC +
Preference number: 6 (lower is better)
Translates to: RLGGQPRVPGPL*TLASLGETLMA
Trigger: GGCCATGAGCGTCTCACCCAAAGAGGCCAACGTGCAGAGAGGTCCCGGGACACGAGGCTGGCCCCCAAGCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 72 bp CCACGAGACCACGGGCAGGGAACTCTGGCTGCTCTTTaGATACAGCAGGCTTGGGGGCCAGCCTCGTGTCCC +
Preference number: 6 (lower is better)
Translates to: PRDHGQGTLAAL*IQQAWGPASCP
Trigger: GGGACACGAGGCTGGCCCCCAAGCCTGCTGTATGCAAAGAGCAGCCAGAGTTCCCTGCCCGTGGTCTCGTGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 72 bp GAGGGTGCCCTTCCCAGACTGGCTCAAGAGGCCGGTTaGCTGTGTCCGAGCTCTCTCTGGGCCTCTCCTTCC +
Preference number: 6 (lower is better)
Translates to: EGALPRLAQEAG*LCPSSLWASPS
Trigger: GGAAGGAGAGGCCCAGAGAGAGCTCGGACACAGGCAACCGGCCTCTTGAGCCAGTCTGGGAAGGGCACCCTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 72 bp GCTCAAGAGGCCGGTTGCCTGTGTCCGAGCTCTCTCTaGGCCTCTCCTTCCTTCGGCCAGCTGAGGGGTTCC +
Preference number: 6 (lower is better)
Translates to: AQEAGCLCPSSL*ASPSFGQLRGS
Trigger: GGAACCCCTCAGCTGGCCGAAGGAAGGAGAGGCCCAGAGAGAGCTCGGACACAGGCAACCGGCCTCTTGAGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 72 bp GCCACGAGACCACGGGCAGGGAACTCTGGCTGCTCTTaGCATACAGCAGGCTTGGGGGCCAGCCTCGTGTCC +
Preference number: 6 (lower is better)
Translates to: ATRPRAGNSGCS*HTAGLGASLVS
Trigger: GGACACGAGGCTGGCCCCCAAGCCTGCTGTATGCAAAGAGCAGCCAGAGTTCCCTGCCCGTGGTCTCGTGGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 72 bp GGAGGGTGCCCTTCCCAGACTGGCTCAAGAGGCCGGTaGCCTGTGTCCGAGCTCTCTCTGGGCCTCTCCTTC +
Preference number: 6 (lower is better)
Translates to: GGCPSQTGSRGR*PVSELSLGLSF
Trigger: GAAGGAGAGGCCCAGAGAGAGCTCGGACACAGGCAACCGGCCTCTTGAGCCAGTCTGGGAAGGGCACCCTCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 90 bp CTGCAGTTTGCCACGAGACCACGGGCAGGGAACTCTGGCTGCTCTTaGCATACAGCAGGCTTGGGGGCCAGCCTCGTGTCCCGGGACCTC +
Preference number: 6 (lower is better)
Translates to: LQFATRPRAGNSGCS*HTAGLGASLVSRDL
Trigger: GAGGTCCCGGGACACGAGGCTGGCCCCCAAGCCTGCTGTATGCAAAGAGCAGCCAGAGTTCCCTGCCCGTGGTCTCGTGGCAAACTGCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS TCA 72 bp CACTGGCTCCCACAGGAACACTACCTGAGCCGGGAGTaGGCTGTGAGGGACACGGGATGGGCAAGGTGCTGC +
Preference number: 6 (lower is better)
Translates to: HWLPQEHYLSRE*AVRDTGWARCC
Trigger: GCAGCACCTTGCCCATCCCGTGTCCCTCACAGCTCACTCCCGGCTCAGGTAGTGTTCCTGTGGGAGCCAGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 72 bp GTCCTCGCCCCCTGTGCCACCCATCTTTGCCTTCTCTaGCACACTGCTTCCTGGGCTTCGTCCTGGGCCATC +
Preference number: 6 (lower is better)
Translates to: VLAPCATHLCLL*HTASWASSWAI
Trigger: GATGGCCCAGGACGAAGCCCAGGAAGCAGTGTGGCAGAGAAGGCAAAGATGGGTGGCACAGGGGGCGAGGAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 72 bp AGCCTCCGGTCTGTGGGCGGTCAGCTTCGTGCTCACTaGGGTCTCAGGCTCTGTGGTGGGCTTAGGCTGGAA +
Preference number: 6 (lower is better)
Translates to: SLRSVGGQLRAH*GLRLCGGLRLE
Trigger: TTCCAGCCTAAGCCCACCACAGAGCCTGAGACCCCAGTGAGCACGAAGCTGACCGCCCACAGACCGGAGGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 72 bp CTGGAGGTAAAGAGGCTCTCGAATCCGTCAGGAGCCTaGAGAGGGGATCAGGGTGGAGGACCCCCTGGGTGG +
Preference number: 6 (lower is better)
Translates to: LEVKRLSNPSGA*RGDQGGGPPGW
Trigger: CCACCCAGGGGGTCCTCCACCCTGATCCCCTCTCCAGGCTCCTGACGGATTCGAGAGCCTCTTTACCTCCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 72 bp GCAGGGAACTCTGGCTGCTCTTTGCATACAGCAGGCTaGGGGGCCAGCCTCGTGTCCCGGGACCTCTCTGCA +
Preference number: 6 (lower is better)
Translates to: AGNSGCSLHTAG*GASLVSRDLSA
Trigger: TGCAGAGAGGTCCCGGGACACGAGGCTGGCCCCCAAGCCTGCTGTATGCAAAGAGCAGCCAGAGTTCCCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 90 bp CTGCTTGGCGGAGATGCTTTGGCAGAGCTGTTCCTGCAGGTGTTCTaGGGTAGTGCTGGCTCACTTCGGCCCAGGGCAGTGGTGAGGCGG +
Preference number: 6 (lower is better)
Translates to: LLGGDALAELFLQVF*GSAGSLRPRAVVRR
Trigger: CCGCCTCACCACTGCCCTGGGCCGAAGTGAGCCAGCACTACCCAAGAACACCTGCAGGAACAGCTCTGCCAAAGCATCTCCGCCAAGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 72 bp CAGTTTGCCACGAGACCACGGGCAGGGAACTCTGGCTaGTCTTTGCATACAGCAGGCTTGGGGGCCAGCCTC +
Preference number: 6 (lower is better)
Translates to: QFATRPRAGNSG*SLHTAGLGASL
Trigger: GAGGCTGGCCCCCAAGCCTGCTGTATGCAAAGAGCAGCCAGAGTTCCCTGCCCGTGGTCTCGTGGCAAACTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 72 bp GCTGCAGTTTGCCACGAGACCACGGGCAGGGAACTCTaGCTGCTCTTTGCATACAGCAGGCTTGGGGGCCAG +
Preference number: 6 (lower is better)
Translates to: AAVCHETTGREL*LLFAYSRLGGQ
Trigger: CTGGCCCCCAAGCCTGCTGTATGCAAAGAGCAGCCAGAGTTCCCTGCCCGTGGTCTCGTGGCAAACTGCAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 72 bp GGGGGTCTCCTGTGGGCTTCAGGCAAGGCGTTTGGCTaGGCACTACCAGGGCTTTCCTCTTTCAGCTGGCCT +
Preference number: 6 (lower is better)
Translates to: GGLLWASGKAFG*ALPGLSSFSWP
Trigger: AGGCCAGCTGAAAGAGGAAAGCCCTGGTAGTGCCCAGCCAAACGCCTTGCCTGAAGCCCACAGGAGACCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 72 bp GCTTCAGCCTCTCCTCCTGGGGTCTCTGTGATTTTGTaGTGCCCGAGAGGGTCCCACCCGTCATGGCCAGGC +
Preference number: 6 (lower is better)
Translates to: ASASPPGVSVIL*CPRGSHPSWPG
Trigger: GCCTGGCCATGACGGGTGGGACCCTCTCGGGCACAACAAAATCACAGAGACCCCAGGAGGAGAGGCTGAAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 72 bp TCTCCCAGCTTCATCTTTCTCCAGGGCGCTGCAGTTTaGCACGAGACCACGGGCAGGGAACTCTGGCTGCTC +
Preference number: 6 (lower is better)
Translates to: SPSFIFLQGAAV*HETTGRELWLL
Trigger: GAGCAGCCAGAGTTCCCTGCCCGTGGTCTCGTGGCAAACTGCAGCGCCCTGGAGAAAGATGAAGCTGGGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 72 bp GACTGCGTCTCCCAGCTTCATCTTTCTCCAGGGCGCTaGAGTTTGCCACGAGACCACGGGCAGGGAACTCTG +
Preference number: 6 (lower is better)
Translates to: DCVSQLHLSPGR*SLPRDHGQGTL
Trigger: CAGAGTTCCCTGCCCGTGGTCTCGTGGCAAACTGCAGCGCCCTGGAGAAAGATGAAGCTGGGAGACGCAGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 72 bp CCTGCTGTCTGTGGTCTTTCCAGTCCCCTGGAAGGTTaGTCGGCTTCTCCCCACACCGAGTCTCTGTGCTGC +
Preference number: 6 (lower is better)
Translates to: PAVCGLSSPLEG*SASPHTESLCC
Trigger: GCAGCACAGAGACTCGGTGTGGGGAGAAGCCGAGCAACCTTCCAGGGGACTGGAAAGACCACAGACAGCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 72 bp TTTGGCTGGGCACTACCAGGGCTTTCCTCTTTCAGCTaGCCTCTCAGAGGTGGGTCCCCACTGGCCTCCTTC +
Preference number: 6 (lower is better)
Translates to: FGWALPGLSSFS*PLRGGSPLASF
Trigger: GAAGGAGGCCAGTGGGGACCCACCTCTGAGAGGCCAGCTGAAAGAGGAAAGCCCTGGTAGTGCCCAGCCAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 72 bp GTCTCCCAGCTTCATCTTTCTCCAGGGCGCTGCAGTTaGCCACGAGACCACGGGCAGGGAACTCTGGCTGCT +
Preference number: 6 (lower is better)
Translates to: VSQLHLSPGRCS*PRDHGQGTLAA
Trigger: AGCAGCCAGAGTTCCCTGCCCGTGGTCTCGTGGCAAACTGCAGCGCCCTGGAGAAAGATGAAGCTGGGAGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 72 bp GCCTGCTGTCTGTGGTCTTTCCAGTCCCCTGGAAGGTaGCTCGGCTTCTCCCCACACCGAGTCTCTGTGCTG +
Preference number: 6 (lower is better)
Translates to: ACCLWSFQSPGR*LGFSPHRVSVL
Trigger: CAGCACAGAGACTCGGTGTGGGGAGAAGCCGAGCAACCTTCCAGGGGACTGGAAAGACCACAGACAGCAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS TCA 72 bp GCTTCTCCCCACACCGAGTCTCTGTGCTGCCAAATCTaGCCTTCTTACAGGAAGCCCGTGGGTCTCGGCACC +
Preference number: 6 (lower is better)
Translates to: ASPHTESLCCQI*PSYRKPVGLGT
Trigger: GGTGCCGAGACCCACGGGCTTCCTGTAAGAAGGTCAGATTTGGCAGCACAGAGACTCGGTGTGGGGAGAAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 72 bp GACAGAAGAGTGGGTTCCTGGATGGAGGCCTGTCGCTaGCTTCCATGGGGGCTGGCAGAATGGTCTTGGAGA +
Preference number: 6 (lower is better)
Translates to: DRRVGSWMEACR*LPWGLAEWSWR
Trigger: TCTCCAAGACCATTCTGCCAGCCCCCATGGAAGGCAGCGACAGGCCTCCATCCAGGAACCCACTCTTCTGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 72 bp CCTGGGACCCAGGGTTGGGGGTTAGCAAGTTCTGACTaGCATAGTTCAGGTGAAAGGTACCCCCGGCGCTTC +
Preference number: 6 (lower is better)
Translates to: PGTQGWGLASSD*HSSGERYPRRF
Trigger: GAAGCGCCGGGGGTACCTTTCACCTGAACTATGGCAGTCAGAACTTGCTAACCCCCAACCCTGGGTCCCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 72 bp AGGAGCCTGGAGAGGGGATCAGGGTGGAGGACCCCCTaGGTGGTGTCTATAACCTTGGGAACAGCCAGCTTT +
Preference number: 6 (lower is better)
Translates to: RSLERGSGWRTP*VVSITLGTASF
Trigger: AAAGCTGGCTGTTCCCAAGGTTATAGACACCACCCAGGGGGTCCTCCACCCTGATCCCCTCTCCAGGCTCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 72 bp TTCAGAACGGGGAGGCATGGGTTGGGGACAGAAGAGTaGGTTCCTGGATGGAGGCCTGTCGCTGCCTTCCAT +
Preference number: 6 (lower is better)
Translates to: FRTGRHGLGTEE*VPGWRPVAAFH
Trigger: ATGGAAGGCAGCGACAGGCCTCCATCCAGGAACCCACTCTTCTGTCCCCAACCCATGCCTCCCCGTTCTGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 72 bp TTGGCTTCAGCCTCTCCTCCTGGGGTCTCTGTGATTTaGTTGTGCCCGAGAGGGTCCCACCCGTCATGGCCA +
Preference number: 6 (lower is better)
Translates to: LASASPPGVSVI*LCPRGSHPSWP
Trigger: TGGCCATGACGGGTGGGACCCTCTCGGGCACAACAAAATCACAGAGACCCCAGGAGGAGAGGCTGAAGCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 72 bp GGAGATGCTTTGGCAGAGCTGTTCCTGCAGGTGTTCTaGGGTAGTGCTGGCTCACTTCGGCCCAGGGCAGTG +
Preference number: 6 (lower is better)
Translates to: GDALAELFLQVF*GSAGSLRPRAV
Trigger: CACTGCCCTGGGCCGAAGTGAGCCAGCACTACCCAAGAACACCTGCAGGAACAGCTCTGCCAAAGCATCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 90 bp AGGGACTGCGTCTCCCAGCTTCATCTTTCTCCAGGGCGCTGCAGTTaGCCACGAGACCACGGGCAGGGAACTCTGGCTGCTCTTTGCATA +
Preference number: 6 (lower is better)
Translates to: RDCVSQLHLSPGRCS*PRDHGQGTLAALCI
Trigger: TATGCAAAGAGCAGCCAGAGTTCCCTGCCCGTGGTCTCGTGGCAAACTGCAGCGCCCTGGAGAAAGATGAAGCTGGGAGACGCAGTCCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 90 bp CTCCGTAGTGCCTGCTGTCTGTGGTCTTTCCAGTCCCCTGGAAGGTaGCTCGGCTTCTCCCCACACCGAGTCTCTGTGCTGCCAAATCTG +
Preference number: 6 (lower is better)
Translates to: LRSACCLWSFQSPGR*LGFSPHRVSVLPNL
Trigger: CAGATTTGGCAGCACAGAGACTCGGTGTGGGGAGAAGCCGAGCAACCTTCCAGGGGACTGGAAAGACCACAGACAGCAGGCACTACGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 90 bp GTAGATGTGTCTGCTAGGCGTGAGGCCTGGCACACAGCTTCACTCTaGGCAGCTGCGTGTCCTGGAGGTAAAGAGGCTCTCGAATCCGTC +
Preference number: 6 (lower is better)
Translates to: VDVSARREAWHTASL*AAACPGGKEALESV
Trigger: GACGGATTCGAGAGCCTCTTTACCTCCAGGACACGCAGCTGCCAAGAGTGAAGCTGTGTGCCAGGCCTCACGCCTAGCAGACACATCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS TCA 72 bp GTTCCTTGGCTTCAGCCTCTCCTCCTGGGGTCTCTGTaGTTTTGTTGTGCCCGAGAGGGTCCCACCCGTCAT +
Preference number: 6 (lower is better)
Translates to: VPWLQPLLLGSL*FCCAREGPTRH
Trigger: ATGACGGGTGGGACCCTCTCGGGCACAACAAAATCACAGAGACCCCAGGAGGAGAGGCTGAAGCCAAGGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS TCA 72 bp TTCTCACCCCTAAAGACCCCTGTCCACACTGTGCCTTaGCCCGAGTTCAGCACCCATGGGCTGGATAGCCTG +
Preference number: 6 (lower is better)
Translates to: FSPLKTPVHTVP*PEFSTHGLDSL
Trigger: CAGGCTATCCAGCCCATGGGTGCTGAACTCGGGTCAAGGCACAGTGTGGACAGGGGTCTTTAGGGGTGAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 72 bp TCCTGCTTGGCGGAGATGCTTTGGCAGAGCTGTTCCTaGAGGTGTTCTTGGGTAGTGCTGGCTCACTTCGGC +
Preference number: 6 (lower is better)
Translates to: SCLAEMLWQSCS*RCSWVVLAHFG
Trigger: GCCGAAGTGAGCCAGCACTACCCAAGAACACCTGCAGGAACAGCTCTGCCAAAGCATCTCCGCCAAGCAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS TCA 72 bp GAACTCCTTACACGTTCCCATCAGAGCTGCCCTGGCTaGGGTTTCTCGGTTCCCTCTAAGTCTGGCAGGGCT +
Preference number: 6 (lower is better)
Translates to: ELLTRSHQSCPG*GFSVPSKSGRA
Trigger: AGCCCTGCCAGACTTAGAGGGAACCGAGAAACCTCAGCCAGGGCAGCTCTGATGGGAACGTGTAAGGAGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 72 bp TTTGGCACAACTGGGCAGCTGACCGAACACACTTTCTaGCGTTGCAGTCTGGCTTCCCTGTGGGCTATGGTC +
Preference number: 6 (lower is better)
Translates to: FGTTGQLTEHTF*RCSLASLWAMV
Trigger: GACCATAGCCCACAGGGAAGCCAGACTGCAACGGCAGAAAGTGTGTTCGGTCAGCTGCCCAGTTGTGCCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 72 bp TTCGTCCTGGGCCATCTTTATTGTCCCCTCTGCACTTaGGCAGACAGCTCCGTAGTGCCTGCTGTCTGTGGT +
Preference number: 6 (lower is better)
Translates to: FVLGHLYCPLCT*ADSSVVPAVCG
Trigger: ACCACAGACAGCAGGCACTACGGAGCTGTCTGCCCAAGTGCAGAGGGGACAATAAAGATGGCCCAGGACGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 72 bp AACTTTGTCCTCAGAGGCAGAATTCCTCCTGTCCTGTaGTCTCAGGGTCCCCTGAGCCTTCCGGCTTGGCCA +
Preference number: 6 (lower is better)
Translates to: NFVLRGRIPPVL*SQGPLSLPAWP
Trigger: TGGCCAAGCCGGAAGGCTCAGGGGACCCTGAGACAACAGGACAGGAGGAATTCTGCCTCTGAGGACAAAGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 90 bp GGTTGGGTCTTTCCTACAGGGCATCTCTGGCTTGGCAGGTCCCCCTaGAGGTTCTGTGTTGCGTATAGACTCCTTGGCCTTCTCTGCCAA +
Preference number: 6 (lower is better)
Translates to: GWVFPTGHLWLGRSP*RFCVAYRLLGLLCQ
Trigger: TTGGCAGAGAAGGCCAAGGAGTCTATACGCAACACAGAACCTCAAGGGGGACCTGCCAAGCCAGAGATGCCCTGTAGGAAAGACCCAACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 90 bp CCACTTTGGCACAACTGGGCAGCTGACCGAACACACTTTCTGCCGTaGCAGTCTGGCTTCCCTGTGGGCTATGGTCTTTGTGAACGTGAG +
Preference number: 6 (lower is better)
Translates to: PLWHNWAADRTHFLP*QSGFPVGYGLCERE
Trigger: CTCACGTTCACAAAGACCATAGCCCACAGGGAAGCCAGACTGCAACGGCAGAAAGTGTGTTCGGTCAGCTGCCCAGTTGTGCCAAAGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS TCA 72 bp TTCCTACAGGGCATCTCTGGCTTGGCAGGTCCCCCTTaGGGTTCTGTGTTGCGTATAGACTCCTTGGCCTTC +
Preference number: 6 (lower is better)
Translates to: FLQGISGLAGPP*GSVLRIDSLAF
Trigger: GAAGGCCAAGGAGTCTATACGCAACACAGAACCTCAAGGGGGACCTGCCAAGCCAGAGATGCCCTGTAGGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 72 bp ACAACTGGGCAGCTGACCGAACACACTTTCTGCCGTTaGAGTCTGGCTTCCCTGTGGGCTATGGTCTTTGTG +
Preference number: 6 (lower is better)
Translates to: TTGQLTEHTFCR*SLASLWAMVFV
Trigger: CACAAAGACCATAGCCCACAGGGAAGCCAGACTGCAACGGCAGAAAGTGTGTTCGGTCAGCTGCCCAGTTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 72 bp AGACAGTGGACCCTGGGCAGGCTGAGGACTCCCTACTaGTGCCTTGAGAGCCAAAAACGTTCGGATCTCTTG +
Preference number: 6 (lower is better)
Translates to: RQWTLGRLRTPY*CLESQKRSDLL
Trigger: CAAGAGATCCGAACGTTTTTGGCTCTCAAGGCACAAGTAGGGAGTCCTCAGCCTGCCCAGGGTCCACTGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 72 bp CACAACTGGGCAGCTGACCGAACACACTTTCTGCCGTaGCAGTCTGGCTTCCCTGTGGGCTATGGTCTTTGT +
Preference number: 6 (lower is better)
Translates to: HNWAADRTHFLP*QSGFPVGYGLC
Trigger: ACAAAGACCATAGCCCACAGGGAAGCCAGACTGCAACGGCAGAAAGTGTGTTCGGTCAGCTGCCCAGTTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 72 bp TGTCCTGTTGTCTCAGGGTCCCCTGAGCCTTCCGGCTaGGCCAGTTCCCACTGTCTTTCATTAGCAAGTGTG +
Preference number: 6 (lower is better)
Translates to: CPVVSGSPEPSG*ASSHCLSLASV
Trigger: CACACTTGCTAATGAAAGACAGTGGGAACTGGCCAAGCCGGAAGGCTCAGGGGACCCTGAGACAACAGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 72 bp GTGGGCTATGGTCTTTGTGAACGTGAGCACTTTTCCTaGTTGGCGGAGATGCTTTGGCAGAGCTGTTCCTGC +
Preference number: 6 (lower is better)
Translates to: VGYGLCEREHFS*LAEMLWQSCSC
Trigger: GCAGGAACAGCTCTGCCAAAGCATCTCCGCCAAGCAGGAAAAGTGCTCACGTTCACAAAGACCATAGCCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 72 bp GAGAACTGCTCTTATCCTCAGAGCTTTCCTTCTCAGTaGCCTTCCCGAGGGCCCCTTGTGGTAGGTGTGTAT +
Preference number: 6 (lower is better)
Translates to: ENCSYPQSFPSQ*PSRGPLVVGVY
Trigger: ATACACACCTACCACAAGGGGCCCTCGGGAAGGCCACTGAGAAGGAAAGCTCTGAGGATAAGAGCAGTTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 72 bp GAACGTGAGCACTTTTCCTGCTTGGCGGAGATGCTTTaGCAGAGCTGTTCCTGCAGGTGTTCTTGGGTAGTG +
Preference number: 6 (lower is better)
Translates to: EREHFSCLAEML*QSCSCRCSWVV
Trigger: CACTACCCAAGAACACCTGCAGGAACAGCTCTGCCAAAGCATCTCCGCCAAGCAGGAAAAGTGCTCACGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 72 bp GCGTCCTGGGTACTTTCTCTACCCTCCCTTATTTTCTaGGGCATTGTAGTGCTGCCTCCTCCACCTCTCCGT +
Preference number: 6 (lower is better)
Translates to: ASWVLSLPSLIF*GIVVLPPPPLR
Trigger: ACGGAGAGGTGGAGGAGGCAGCACTACAATGCCCAAGAAAATAAGGGAGGGTAGAGAAAGTACCCAGGACGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 72 bp TTTCCTACAGGGCATCTCTGGCTTGGCAGGTCCCCCTaGAGGTTCTGTGTTGCGTATAGACTCCTTGGCCTT +
Preference number: 6 (lower is better)
Translates to: FPTGHLWLGRSP*RFCVAYRLLGL
Trigger: AAGGCCAAGGAGTCTATACGCAACACAGAACCTCAAGGGGGACCTGCCAAGCCAGAGATGCCCTGTAGGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 72 bp GGCTATGGTCTTTGTGAACGTGAGCACTTTTCCTGCTaGGCGGAGATGCTTTGGCAGAGCTGTTCCTGCAGG +
Preference number: 6 (lower is better)
Translates to: GYGLCEREHFSC*AEMLWQSCSCR
Trigger: CCTGCAGGAACAGCTCTGCCAAAGCATCTCCGCCAAGCAGGAAAAGTGCTCACGTTCACAAAGACCATAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 90 bp TTCCCTGTGGGCTATGGTCTTTGTGAACGTGAGCACTTTTCCTGCTaGGCGGAGATGCTTTGGCAGAGCTGTTCCTGCAGGTGTTCTTGG +
Preference number: 6 (lower is better)
Translates to: FPVGYGLCEREHFSC*AEMLWQSCSCRCSW
Trigger: CCAAGAACACCTGCAGGAACAGCTCTGCCAAAGCATCTCCGCCAAGCAGGAAAAGTGCTCACGTTCACAAAGACCATAGCCCACAGGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 90 bp TGCGGTTCCCTGTCAACCCTGTGCCGATATCTCAGGTCTAGAACTTaGTCCTCAGAGGCAGAATTCCTCCTGTCCTGTTGTCTCAGGGTC +
Preference number: 6 (lower is better)
Translates to: CGSLSTLCRYLRSRT*SSEAEFLLSCCLRV
Trigger: GACCCTGAGACAACAGGACAGGAGGAATTCTGCCTCTGAGGACAAAGTTCTAGACCTGAGATATCGGCACAGGGTTGACAGGGAACCGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 72 bp TTTGTGAACGTGAGCACTTTTCCTGCTTGGCGGAGATaGTTTGGCAGAGCTGTTCCTGCAGGTGTTCTTGGG +
Preference number: 6 (lower is better)
Translates to: FVNVSTFPAWRR*FGRAVPAGVLG
Trigger: CCCAAGAACACCTGCAGGAACAGCTCTGCCAAAGCATCTCCGCCAAGCAGGAAAAGTGCTCACGTTCACAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 72 bp GCTATGGTCTTTGTGAACGTGAGCACTTTTCCTGCTTaGCGGAGATGCTTTGGCAGAGCTGTTCCTGCAGGT +
Preference number: 6 (lower is better)
Translates to: AMVFVNVSTFPA*RRCFGRAVPAG
Trigger: ACCTGCAGGAACAGCTCTGCCAAAGCATCTCCGCCAAGCAGGAAAAGTGCTCACGTTCACAAAGACCATAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 72 bp CGGATCTCTTGCTCGATGCTATCATCACTGTCAATGTaGCTGCTGTCACCTTCAGAACGGGGAGGCATGGGT +
Preference number: 6 (lower is better)
Translates to: RISCSMLSSLSM*LLSPSERGGMG
Trigger: ACCCATGCCTCCCCGTTCTGAAGGTGACAGCAGCAACATTGACAGTGATGATAGCATCGAGCAAGAGATCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 72 bp GGATCTCTTGCTCGATGCTATCATCACTGTCAATGTTaGTGCTGTCACCTTCAGAACGGGGAGGCATGGGTT +
Preference number: 6 (lower is better)
Translates to: GSLARCYHHCQC*CCHLQNGEAWV
Trigger: AACCCATGCCTCCCCGTTCTGAAGGTGACAGCAGCAACATTGACAGTGATGATAGCATCGAGCAAGAGATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CCA 72 bp GAACACACTTTCTGCCGTTGCAGTCTGGCTTCCCTGTaGGCTATGGTCTTTGTGAACGTGAGCACTTTTCCT +
Preference number: 6 (lower is better)
Translates to: EHTFCRCSLASL*AMVFVNVSTFP
Trigger: AGGAAAAGTGCTCACGTTCACAAAGACCATAGCCCACAGGGAAGCCAGACTGCAACGGCAGAAAGTGTGTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS TCA 72 bp TGCTCATCTTTGTTAACCTGGGAGGTTTTCGGAAGATaGACTCCTTACACGTTCCCATCAGAGCTGCCCTGG +
Preference number: 6 (lower is better)
Translates to: CSSLLTWEVFGR*TPYTFPSELPW
Trigger: CCAGGGCAGCTCTGATGGGAACGTGTAAGGAGTTCATCTTCCGAAAACCTCCCAGGTTAACAAAGATGAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS GCA 72 bp TCAGGCTCTGTGGTGGGCTTAGGCTGGAAGTTTCTCTaGTGTGTGCTCATCTTTGTTAACCTGGGAGGTTTT +
Preference number: 6 (lower is better)
Translates to: SGSVVGLGWKFL*CVLIFVNLGGF
Trigger: AAAACCTCCCAGGTTAACAAAGATGAGCACACAGCAGAGAAACTTCCAGCCTAAGCCCACCACAGAGCCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 72 bp CTGTCAACCCTGTGCCGATATCTCAGGTCTAGAACTTaGTCCTCAGAGGCAGAATTCCTCCTGTCCTGTTGT +
Preference number: 6 (lower is better)
Translates to: LSTLCRYLRSRT*SSEAEFLLSCC
Trigger: ACAACAGGACAGGAGGAATTCTGCCTCTGAGGACAAAGTTCTAGACCTGAGATATCGGCACAGGGTTGACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2
CDS CAA 72 bp ATTGTAGTGCTGCCTCCTCCACCTCTCCGTTTCCGTTaGCAGACCAGAGGGAGATCTAGTGTTTTAGCAAAA +
Preference number: 6 (lower is better)
Translates to: IVVLPPPPLRFR*QTRGRSSVLAK
Trigger: TTTTGCTAAAACACTAGATCTCCCTCTGGTCTGCAAACGGAAACGGAGAGGTGGAGGAGGCAGCACTACAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040324.14
ENSMUST00000189694.2