Pregenerated sensors for PPP1R1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022490Ensembl transcript IDs: ENSMUST00000023133.8
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAGTGGCCACAGAATTGGAGGTTTCTCAGGGAGCTAGGGACAAGATaGACTTCCCCTTTATGTCCAGCAGATGGCGCTTTGGCAAACCCT | + |
|
Preference number: 1 (lower is better) Translates to: QWPQNWRFLRELGTR*TSPLCPADGALANP Trigger: AGGGTTTGCCAAAGCGCCATCTGCTGGACATAAAGGGGAAGTGCATCTTGTCCCTAGCTCCCTGAGAAACCTCCAATTCTGTGGCCACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| 3UTR CCA 90 bp | CAGTGTTTTCTGACAGTCTTTGTGTCAGGTTTGTACAAGGAACAGTaGCCACAGAATTGGAGGTTTCTCAGGGAGCTAGGGACAAGATGC | + |
|
Preference number: 1 (lower is better) Translates to: QCFLTVFVSGLYKEQ*PQNWRFLRELGTRC Trigger: GCATCTTGTCCCTAGCTCCCTGAGAAACCTCCAATTCTGTGGCCACTGTTCCTTGTACAAACCTGACACAAAGACTGTCAGAAAACACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| 3UTR-3UTR GCA 90 bp | CTTTGGCAAACCCTCACTGGTCTGGGTACCCGCTTTAGAGCAGCAGTCTCCCAAGTGGGGGCAGTGGGGTaGAGACAAGAGCTGAAGGAG | + |
|
Preference number: 2 (lower is better) Translates to: LWQTLTGLGTRFRAAVSQVGAVG*RQELKE Trigger: CTCCTTCAGCTCTTGTCTGCACCCCACTGCCCCCAC...TTGGGAGACTGCTGCTCTAAAGCGGGTACCCAGACCAGTGAGGGTTTGCCAAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| 3UTR-3UTR CCA 90 bp | GCTCTGACCTTAGGATGTAGGACAATGGGAGAGGTGGCCCTTTGGGTTTCTAGCTTGTACAAGGAACAGTaGCCACAGAATTGGAGGTTT | + |
|
Preference number: 2 (lower is better) Translates to: ALTLGCRTMGEVALWVSSLYKEQ*PQNWRF Trigger: AAACCTCCAATTCTGTGGCCACTGTTCCTTGTACAA...GCTAGAAACCCAAAGGGCCACCTCTCCCATTGTCCTACATCCTAAGGTCAGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| 3UTR-3UTR CCA 90 bp | ACAGTAACAAAGGAAAACCTTGAGGCGACCTCCTACTTCCAGACGTCTATTTTTAAGGGATCCCCGGGCTaGAAAGAAGAAAAGCTCCAA | + |
|
Preference number: 2 (lower is better) Translates to: TVTKENLEATSYFQTSIFKGSPG*KEEKLQ Trigger: TTGGAGCTTTTCTTCTTTCCAGCCCGGGGATCCCTT...AAAAATAGACGTCTGGAAGTAGGAGGTCGCCTCAAGGTTTTCCTTTGTTACTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| 3UTR-3UTR TCA 90 bp | TTTCTAGCCACAGTGTTTTCTGACAGTCTTTGTGTCAGGTTTGTACAAGGAACAAACAAAGGAAAACCTTaGGGCGACCTCCTACTTCCA | + |
|
Preference number: 2 (lower is better) Translates to: FLATVFSDSLCVRFVQGTNKGKP*GDLLLP Trigger: TGGAAGTAGGAGGTCGCCTCAAGGTTTTCCTTTGTT...TGTTCCTTGTACAAACCTGACACAAAGACTGTCAGAAAACACTGTGGCTAGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| 3UTR CCA 72 bp | AGGGACAAGATGCACTTCCCCTTTATGTCCAGCAGATaGCGCTTTGGCAAACCCTCACTGGTCTGGGTACCC | + |
|
Preference number: 3 (lower is better) Translates to: RDKMHFPFMSSR*RFGKPSLVWVP Trigger: GGGTACCCAGACCAGTGAGGGTTTGCCAAAGCGCCATCTGCTGGACATAAAGGGGAAGTGCATCTTGTCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| 3UTR CCA 72 bp | GTGTCAGGTTTGTACAAGGAACAGTGGCCACAGAATTaGAGGTTTCTCAGGGAGCTAGGGACAAGATGCACT | + |
|
Preference number: 3 (lower is better) Translates to: VSGLYKEQWPQN*RFLRELGTRCT Trigger: AGTGCATCTTGTCCCTAGCTCCCTGAGAAACCTCCAATTCTGTGGCCACTGTTCCTTGTACAAACCTGACAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| 3UTR CCA 72 bp | CTGACAGTCTTTGTGTCAGGTTTGTACAAGGAACAGTaGCCACAGAATTGGAGGTTTCTCAGGGAGCTAGGG | + |
|
Preference number: 3 (lower is better) Translates to: LTVFVSGLYKEQ*PQNWRFLRELG Trigger: CCCTAGCTCCCTGAGAAACCTCCAATTCTGTGGCCACTGTTCCTTGTACAAACCTGACACAAAGACTGTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| 3UTR TCA 72 bp | GTGGGCAGAGCTTTCCACAGTAACAAAGGAAAACCTTaGGGCGACCTCCTACTTCCAGACGTCTATTTTTCT | + |
|
Preference number: 3 (lower is better) Translates to: VGRAFHSNKGKP*GDLLLPDVYFS Trigger: AGAAAAATAGACGTCTGGAAGTAGGAGGTCGCCTCAAGGTTTTCCTTTGTTACTGTGGAAAGCTCTGCCCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| 3UTR TCA 72 bp | GAGGTGGCCCTTTGGGTTTCTAGCCACAGTGTTTTCTaGCAGTCTTTGTGTCAGGTTTGTACAAGGAACAGT | + |
|
Preference number: 3 (lower is better) Translates to: EVALWVSSHSVF*QSLCQVCTRNS Trigger: ACTGTTCCTTGTACAAACCTGACACAAAGACTGTCAGAAAACACTGTGGCTAGAAACCCAAAGGGCCACCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| 3UTR-3UTR CAA 90 bp | GCCTGGCTAGGATCACAGACCATTTCTCTATTTGTGCATGGTGTTAGTCTTGCTGTGGAGGCTAGGCTTTaGTCAGTTTGCTATTTCCTT | + |
|
Preference number: 3 (lower is better) Translates to: AWLGSQTISLFVHGVSLAVEARL*SVCYFL Trigger: AAGGAAATAGCAAACTGACAAAAGCCTAGCCTCCAC...AGCAAGACTAACACCATGCACAAATAGAGAAATGGTCTGTGATCCTAGCCAGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| 3UTR-3UTR CAA 90 bp | GCCTGGCTAGGATCACAGACCATTTCTCTATTTGTGCATGGTGTTAGTCTTGCTGTCTATTTTTCTATTTaGCTAGTGGAGGCTAGGCTT | + |
|
Preference number: 3 (lower is better) Translates to: AWLGSQTISLFVHGVSLAVYFSI*LVEARL Trigger: AAGCCTAGCCTCCACTAGCAAAATAGAAAAATAGAC...AGCAAGACTAACACCATGCACAAATAGAGAAATGGTCTGTGATCCTAGCCAGGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| 3UTR CCA 72 bp | AATTCTTTGGGAAAATCAGAATCAGCAGCAGAAGCCTaGCTAGGATCACAGACCATTTCTCTATTTGTGCAT | + |
|
Preference number: 3 (lower is better) Translates to: NSLGKSESAAEA*LGSQTISLFVH Trigger: ATGCACAAATAGAGAAATGGTCTGTGATCCTAGCCAGGCTTCTGCTGCTGATTCTGATTTTCCCAAAGAATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR TCA 90 bp | ACCTTAGGATGTAGGACAATGGGAGAGGTGGCCCTTTGGGTTTCTAGCCACAGTGCCTCCGGGTCCAGGTaGGGCTCCAGCAGCGGGACC | + |
|
Preference number: 4 (lower is better) Translates to: TLGCRTMGEVALWVSSHSASGSR*GSSSGT Trigger: GGTCCCGCTGCTGGAGCCTCACCTGGACCCGGAGGC...ACTGTGGCTAGAAACCCAAAGGGCCACCTCTCCCATTGTCCTACATCCTAAGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR GCA 90 bp | GGATGTAGGACAATGGGAGAGGTGGCCCTTTGGGTTTCTAGCCACAGTGTTTTCCGGCGCCTCCGAATCTaGTCCGCCGCCTCCGGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: GCRTMGEVALWVSSHSVFRRLRI*SAASGS Trigger: GGACCCGGAGGCGGCGGAGCAGATTCGGAGGCGCCG...GAAAACACTGTGGCTAGAAACCCAAAGGGCCACCTCTCCCATTGTCCTACATCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR CCA 90 bp | GCCACAGAATTGGAGGTTTCTCAGGGAGCTAGGGACAAGATGCACTTCCCCTTTTGGTCAGCACAAGTGTaGCAGGGGTGGGGCGGCGCC | + |
|
Preference number: 4 (lower is better) Translates to: ATELEVSQGARDKMHFPFWSAQV*QGWGGA Trigger: GGCGCCGCCCCACCCCTGCCACACTTGTGCTGACCA...AAAGGGGAAGTGCATCTTGTCCCTAGCTCCCTGAGAAACCTCCAATTCTGTGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR CCA 90 bp | GATGTAGGACAATGGGAGAGGTGGCCCTTTGGGTTTCTAGCCACAGTGTTTTCTCAAGTGTGGCAGGGGTaGGGCGGCGCCTCCGAATCT | + |
|
Preference number: 4 (lower is better) Translates to: DVGQWERWPFGFLATVFSQVWQG*GGASES Trigger: AGATTCGGAGGCGCCGCCCCACCCCTGCCACACTTG...AGAAAACACTGTGGCTAGAAACCCAAAGGGCCACCTCTCCCATTGTCCTACATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR CCA 90 bp | GAGAGGTGGCCCTTTGGGTTTCTAGCCACAGTGTTTTCTGACAGTCTTTGTGTCCGCCGAGCCTGTGTCTaGGATCCCAGGTGGGCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: ERWPFGFLATVFSDSLCVRRACV*DPRWAG Trigger: TCCTGCCCACCTGGGATCCCAGACACAGGCTCGGCG...GACACAAAGACTGTCAGAAAACACTGTGGCTAGAAACCCAAAGGGCCACCTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR CCA 90 bp | CTTTGGCAAACCCTCACTGGTCTGGGTACCCGCTTTAGAGCAGCAGTCTCCCAAGGGAGGACTGATCACTaGTCAGCACAAGTGTGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: LWQTLTGLGTRFRAAVSQGRTDH*SAQVWQ Trigger: CTGCCACACTTGTGCTGACCAGTGATCAGTCCTCCC...TTGGGAGACTGCTGCTCTAAAGCGGGTACCCAGACCAGTGAGGGTTTGCCAAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR CCA 90 bp | TTTCTCAGGGAGCTAGGGACAAGATGCACTTCCCCTTTATGTCCAGCAGATGGCAGCGGGACCGTAAACTaGATCTTCCGTGGGCTGTTG | + |
|
Preference number: 4 (lower is better) Translates to: FLRELGTRCTSPLCPADGSGTVN*IFRGLL Trigger: CAACAGCCCACGGAAGATCCAGTTTACGGTCCCGCT...GCCATCTGCTGGACATAAAGGGGAAGTGCATCTTGTCCCTAGCTCCCTGAGAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR CCA 90 bp | TTTCTCAGGGAGCTAGGGACAAGATGCACTTCCCCTTTATGTCCAGCAGATGGCAAACTGGATCTTCCGTaGGCTGTTGTCGGGCTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: FLRELGTRCTSPLCPADGKLDLP*AVVGLH Trigger: ATGGAGCCCGACAACAGCCCACGGAAGATCCAGTTT...GCCATCTGCTGGACATAAAGGGGAAGTGCATCTTGTCCCTAGCTCCCTGAGAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR TCA 90 bp | TTTCTCAGGGAGCTAGGGACAAGATGCACTTCCCCTTTATGTCCAGCAGATGGCTTGCCGTGGAGACATTaGCAAGGTGGACTTGAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: FLRELGTRCTSPLCPADGLPWRH*QGGLEK Trigger: CTTCTCAAGTCCACCTTGTCAATGTCTCCACGGCAA...GCCATCTGCTGGACATAAAGGGGAAGTGCATCTTGTCCCTAGCTCCCTGAGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR GCA 90 bp | TTTCTCAGGGAGCTAGGGACAAGATGCACTTCCCCTTTATGTCCAGCAGATGGCGTCATCTTCTTCCGTTaGCGTGGAGACATTGACAAG | + |
|
Preference number: 4 (lower is better) Translates to: FLRELGTRCTSPLCPADGVIFFR*RGDIDK Trigger: CTTGTCAATGTCTCCACGGCAACGGAAGAAGATGAC...GCCATCTGCTGGACATAAAGGGGAAGTGCATCTTGTCCCTAGCTCCCTGAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR GCA 90 bp | GAGCTTTCCACAGTAACAAAGGAAAACCTTGAGGCGACCTCCTACTTCCAGACGCTTGGGGTTGGATTCTaGAGACTTTTGTGCTGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: ELSTVTKENLEATSYFQTLGVGF*RLLCCP Trigger: GGGACAGCACAAAAGTCTGCAGAATCCAACCCCAAG...CGTCTGGAAGTAGGAGGTCGCCTCAAGGTTTTCCTTTGTTACTGTGGAAAGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR CCA 90 bp | CAAGGAACAGTGGCCACAGAATTGGAGGTTTCTCAGGGAGCTAGGGACAAGATGTGTTCAACCATCGTCTaGAGCTCTTTCATGGTGGGT | + |
|
Preference number: 4 (lower is better) Translates to: QGTVATELEVSQGARDKMCSTIV*SSFMVG Trigger: ACCCACCATGAAAGAGCTCCAGACGATGGTTGAACA...CATCTTGTCCCTAGCTCCCTGAGAAACCTCCAATTCTGTGGCCACTGTTCCTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR CCA 90 bp | TGGAGGTTTCTCAGGGAGCTAGGGACAAGATGCACTTCCCCTTTATGTCCAGCATCCAGTGGTAGCATGTaGGCTGAAGAATCCTCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: WRFLRELGTRCTSPLCPASSGSM*AEESSV Trigger: AACAGAGGATTCTTCAGCCCACATGCTACCACTGGA...TGCTGGACATAAAGGGGAAGTGCATCTTGTCCCTAGCTCCCTGAGAAACCTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR TCA 90 bp | CTAGCCACAGTGTTTTCTGACAGTCTTTGTGTCAGGTTTGTACAAGGAACAGTGGGTGGACTTGAGAAGTaGGTTGGGGATCCGGTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: LATVFSDSLCVRFVQGTVGGLEK*VGDPVF Trigger: GAAGACCGGATCCCCAACTCACTTCTCAAGTCCACC...CACTGTTCCTTGTACAAACCTGACACAAAGACTGTCAGAAAACACTGTGGCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR CCA 90 bp | GATGTAGGACAATGGGAGAGGTGGCCCTTTGGGTTTCTAGCCACAGTGTTTTCTCCTGAGTCTTGGGGTTaGATTCTGCAGACTTTTGTG | + |
|
Preference number: 4 (lower is better) Translates to: DVGQWERWPFGFLATVFSPESWG*ILQTFV Trigger: CACAAAAGTCTGCAGAATCCAACCCCAAGACTCAGG...AGAAAACACTGTGGCTAGAAACCCAAAGGGCCACCTCTCCCATTGTCCTACATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR TCA 90 bp | GCCTGGCTAGGATCACAGACCATTTCTCTATTTGTGCATGGTGTTAGTCTTGCTATTTCTGGGGAGGACTaGTCACTGGTCAGCACAAGT | + |
|
Preference number: 4 (lower is better) Translates to: AWLGSQTISLFVHGVSLAISGED*SLVSTS Trigger: ACTTGTGCTGACCAGTGATCAGTCCTCCCCAGAAAT...AGCAAGACTAACACCATGCACAAATAGAGAAATGGTCTGTGATCCTAGCCAGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR TCA 90 bp | CCCCGGGCTGGAAAGAAGAAAAGCTCCAAGGACCTAACACCAAATTTATCACTTTTCTGTTGCCCTAGGTaGTGTTCAACCATCGTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: PRAGKKKSSKDLTPNLSLFCCPR*CSTIVW Trigger: CCAGACGATGGTTGAACATCACCTAGGGCAACAGAA...AAGTGATAAATTTGGTGTTAGGTCCTTGGAGCTTTTCTTCTTTCCAGCCCGGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR CCA 90 bp | GATGTAGGACAATGGGAGAGGTGGCCCTTTGGGTTTCTAGCCACAGTGTTTTCTGTCTTCATCTATTTCTaGGGAGGACTGATCACTGGT | + |
|
Preference number: 4 (lower is better) Translates to: DVGQWERWPFGFLATVFSVFIYF*GGLITG Trigger: ACCAGTGATCAGTCCTCCCCAGAAATAGATGAAGAC...AGAAAACACTGTGGCTAGAAACCCAAAGGGCCACCTCTCCCATTGTCCTACATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR TCA 90 bp | CTAGCCACAGTGTTTTCTGACAGTCTTTGTGTCAGGTTTGTACAAGGAACAGTGTTGACAAGGTGGACTTaGGAAGTGAGTTGGGGATCC | + |
|
Preference number: 4 (lower is better) Translates to: LATVFSDSLCVRFVQGTVLTRWT*EVSWGS Trigger: GGATCCCCAACTCACTTCTCAAGTCCACCTTGTCAA...CACTGTTCCTTGTACAAACCTGACACAAAGACTGTCAGAAAACACTGTGGCTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR CCA 90 bp | ACAGTAACAAAGGAAAACCTTGAGGCGACCTCCTACTTCCAGACGTCTATTTTTAAGAATCCTCTGTTCTaGGCTCCACACCACACTGCT | + |
|
Preference number: 4 (lower is better) Translates to: TVTKENLEATSYFQTSIFKNPLF*APHHTA Trigger: AGCAGTGTGGTGTGGAGCCCAGAACAGAGGATTCTT...AAAAATAGACGTCTGGAAGTAGGAGGTCGCCTCAAGGTTTTCCTTTGTTACTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR CCA 90 bp | TTTCTAGCCACAGTGTTTTCTGACAGTCTTTGTGTCAGGTTTGTACAAGGAACATCTGGAGCTCTTTCATaGTGGGTGTGGTCCTTGTCA | + |
|
Preference number: 4 (lower is better) Translates to: FLATVFSDSLCVRFVQGTSGALS*WVWSLS Trigger: TGACAAGGACCACACCCACCATGAAAGAGCTCCAGA...TGTTCCTTGTACAAACCTGACACAAAGACTGTCAGAAAACACTGTGGCTAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| 3UTR CAA 72 bp | GGCGACCTCCTACTTCCAGACGTCTATTTTTCTATTTaGCTAGTGGAGGCTAGGCTTTTGTCAGTTTGCTAT | + |
|
Preference number: 4 (lower is better) Translates to: GDLLLPDVYFSI*LVEARLLSVCY Trigger: ATAGCAAACTGACAAAAGCCTAGCCTCCACTAGCAAAATAGAAAAATAGACGTCTGGAAGTAGGAGGTCGCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS TCA 90 bp | GTGGGGCGGCGCCTCCGAATCTGCTCCGCCGCCTCCGGGTCCAGGTaGGGCTCCAGCAGCGGGACCGTAAACTGGATCTTCCGTGGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: VGRRLRICSAASGSR*GSSSGTVNWIFRGL Trigger: CAGCCCACGGAAGATCCAGTTTACGGTCCCGCTGCTGGAGCCTCACCTGGACCCGGAGGCGGCGGAGCAGATTCGGAGGCGCCGCCCCAC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS TCA 90 bp | GTTGGATTCTGCAGACTTTTGTGCTGTCCCGGGGGTATCTGGCCTTaGCGCCGAGCCTGTGTCTGGGATCCCAGGTGGGCAGGACTCCTG | + |
|
Preference number: 5 (lower is better) Translates to: VGFCRLLCCPGGIWP*RRACVWDPRWAGLL Trigger: CAGGAGTCCTGCCCACCTGGGATCCCAGACACAGGCTCGGCGTCAAGGCCAGATACCCCCGGGACAGCACAAAAGTCTGCAGAATCCAAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS GCA 90 bp | AGCCTGTGTCTGGGATCCCAGGTGGGCAGGACTCCTGGTTCCCTGTaGTCTCAGTGGCTCCCTCAGGTTCTTCCCCTTGCTTCTGTTGCC | + |
|
Preference number: 5 (lower is better) Translates to: SLCLGSQVGRTPGSL*SQWLPQVLPLASVA Trigger: GGCAACAGAAGCAAGGGGAAGAACCTGAGGGAGCCACTGAGAGCACAGGGAACCAGGAGTCCTGCCCACCTGGGATCCCAGACACAGGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS CCA 90 bp | CCTGGGAATCCAGTGGTAGCATGTGGGCTGAAGAATCCTCTGTTCTaGGCTCCACACCACACTGCTCCTGAGTCTTGGGGTTGGATTCTG | + |
|
Preference number: 5 (lower is better) Translates to: PGNPVVACGLKNPLF*APHHTAPESWGWIL Trigger: CAGAATCCAACCCCAAGACTCAGGAGCAGTGTGGTGTGGAGCCCAGAACAGAGGATTCTTCAGCCCACATGCTACCACTGGATTCCCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS CCA 90 bp | AAGAATCCTCTGTTCTGGGCTCCACACCACACTGCTCCTGAGTCTTaGGGTTGGATTCTGCAGACTTTTGTGCTGTCCCGGGGGTATCTG | + |
|
Preference number: 5 (lower is better) Translates to: KNPLFWAPHHTAPES*GWILQTFVLSRGYL Trigger: CAGATACCCCCGGGACAGCACAAAAGTCTGCAGAATCCAACCCCAAGACTCAGGAGCAGTGTGGTGTGGAGCCCAGAACAGAGGATTCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS-3UTR CAA 90 bp | TTTCTCAGGGAGCTAGGGACAAGATGCACTTCCCCTTTATGTCCAGCAGATGGCGACTTGAGAAGTGAGTaGGGGATCCGGTCTTCATCT | + |
|
Preference number: 5 (lower is better) Translates to: FLRELGTRCTSPLCPADGDLRSE*GIRSSS Trigger: AGATGAAGACCGGATCCCCAACTCACTTCTCAAGTC...GCCATCTGCTGGACATAAAGGGGAAGTGCATCTTGTCCCTAGCTCCCTGAGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS TCA 72 bp | CGCCTCCGAATCTGCTCCGCCGCCTCCGGGTCCAGGTaGGGCTCCAGCAGCGGGACCGTAAACTGGATCTTC | + |
|
Preference number: 6 (lower is better) Translates to: RLRICSAASGSR*GSSSGTVNWIF Trigger: GAAGATCCAGTTTACGGTCCCGCTGCTGGAGCCTCACCTGGACCCGGAGGCGGCGGAGCAGATTCGGAGGCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS CAA 72 bp | CTGCAGACTTTTGTGCTGTCCCGGGGGTATCTGGCCTaGACGCCGAGCCTGTGTCTGGGATCCCAGGTGGGC | + |
|
Preference number: 6 (lower is better) Translates to: LQTFVLSRGYLA*TPSLCLGSQVG Trigger: GCCCACCTGGGATCCCAGACACAGGCTCGGCGTCAAGGCCAGATACCCCCGGGACAGCACAAAAGTCTGCAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS CAA 90 bp | GGTTGGATTCTGCAGACTTTTGTGCTGTCCCGGGGGTATCTGGCCTaGACGCCGAGCCTGTGTCTGGGATCCCAGGTGGGCAGGACTCCT | + |
|
Preference number: 6 (lower is better) Translates to: GWILQTFVLSRGYLA*TPSLCLGSQVGRTP Trigger: AGGAGTCCTGCCCACCTGGGATCCCAGACACAGGCTCGGCGTCAAGGCCAGATACCCCCGGGACAGCACAAAAGTCTGCAGAATCCAACC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS CCA 72 bp | CCAGTGGTAGCATGTGGGCTGAAGAATCCTCTGTTCTaGGCTCCACACCACACTGCTCCTGAGTCTTGGGGT | + |
|
Preference number: 6 (lower is better) Translates to: PVVACGLKNPLF*APHHTAPESWG Trigger: ACCCCAAGACTCAGGAGCAGTGTGGTGTGGAGCCCAGAACAGAGGATTCTTCAGCCCACATGCTACCACTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS TCA 72 bp | GAATCCTCTGTTCTGGGCTCCACACCACACTGCTCCTaGGTCTTGGGGTTGGATTCTGCAGACTTTTGTGCT | + |
|
Preference number: 6 (lower is better) Translates to: ESSVLGSTPHCS*VLGLDSADFCA Trigger: AGCACAAAAGTCTGCAGAATCCAACCCCAAGACTCAGGAGCAGTGTGGTGTGGAGCCCAGAACAGAGGATTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||
| CDS CAA 72 bp | CGTGGAGACATTGACAAGGTGGACTTGAGAAGTGAGTaGGGGATCCGGTCTTCATCTATTTCTGGGGAGGAC | + |
|
Preference number: 6 (lower is better) Translates to: RGDIDKVDLRSE*GIRSSSISGED Trigger: GTCCTCCCCAGAAATAGATGAAGACCGGATCCCCAACTCACTTCTCAAGTCCACCTTGTCAATGTCTCCACG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023133.8 |
||