Pregenerated sensors for PPP1R17 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002930Ensembl transcript IDs: ENSMUST00000052827.6
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTCCTCACCTCCTCTCTGTCTGCTGTTTGGCTGATGAAGTACAGATaGAAAGAGTCCCCACAGGCACTTGGAGATTGCCAGCTGCACAGG | + |
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Preference number: 1 (lower is better) Translates to: VLTSSLSAVWLMKYR*KESPQALGDCQLHR Trigger: CCTGTGCAGCTGGCAATCTCCAAGTGCCTGTGGGGACTCTTTGCATCTGTACTTCATCAGCCAAACAGCAGACAGAGAGGAGGTGAGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR TCA 90 bp | GGACCTCAGTATGTACAGAGCTGTCCCATGCCTCCTGCCTTGGTCTaGACACTAGATACTCTGCTTTTCACCCTTTTAGTCCTCACCTCC | + |
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Preference number: 1 (lower is better) Translates to: GPQYVQSCPMPPALV*TLDTLLFTLLVLTS Trigger: GGAGGTGAGGACTAAAAGGGTGAAAAGCAGAGTATCTAGTGTTCAGACCAAGGCAGGAGGCATGGGACAGCTCTGTACATACTGAGGTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR GCA 90 bp | AGTACAGATGCAAAGAGTCCCCACAGGCACTTGGAGATTGCCAGCTaGACAGGAGCCAAATGCACATCTGTGTTCACTAGACAACACCAC | + |
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Preference number: 1 (lower is better) Translates to: STDAKSPHRHLEIAS*TGAKCTSVFTRQHH Trigger: GTGGTGTTGTCTAGTGAACACAGATGTGCATTTGGCTCCTGTGCAGCTGGCAATCTCCAAGTGCCTGTGGGGACTCTTTGCATCTGTACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR CCA 90 bp | TGTTTGGCTGATGAAGTACAGATGCAAAGAGTCCCCACAGGCACTTaGAGATTGCCAGCTGCACAGGAGCCAAATGCACATCTGTGTTCA | + |
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Preference number: 1 (lower is better) Translates to: CLADEVQMQRVPTGT*RLPAAQEPNAHLCS Trigger: TGAACACAGATGTGCATTTGGCTCCTGTGCAGCTGGCAATCTCCAAGTGCCTGTGGGGACTCTTTGCATCTGTACTTCATCAGCCAAACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR GCA 90 bp | AGTCCCCACAGGCACTTGGAGATTGCCAGCTGCACAGGAGCCAAATaGACATCTGTGTTCACTAGACAACACCACCTCTTATATAAGAAA | + |
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Preference number: 1 (lower is better) Translates to: SPHRHLEIASCTGAK*TSVFTRQHHLLYKK Trigger: TTTCTTATATAAGAGGTGGTGTTGTCTAGTGAACACAGATGTGCATTTGGCTCCTGTGCAGCTGGCAATCTCCAAGTGCCTGTGGGGACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR-3UTR GCA 90 bp | AAACAGCTGGACCTCAGTATGTACAGAGCTGTCCCATGCCTCCTGCCTTGGTCTCAGCAGCTGTGGCCTTaGTGTACTCCTGAGTGTTTG | + |
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Preference number: 2 (lower is better) Translates to: KQLDLSMYRAVPCLLPWSQQLWP*CTPECL Trigger: CAAACACTCAGGAGTACAGCAAGGCCACAGCTGCTG...AGACCAAGGCAGGAGGCATGGGACAGCTCTGTACATACTGAGGTCCAGCTGTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR-3UTR TCA 90 bp | AAGAGTCCCCACAGGCACTTGGAGATTGCCAGCTGCACAGGAGCCAAATGCACATTTTGCTTGCAGACATaGAGCACTGAGGTCTCACCT | + |
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Preference number: 2 (lower is better) Translates to: KSPHRHLEIASCTGAKCTFCLQT*STEVSP Trigger: AGGTGAGACCTCAGTGCTTCATGTCTGCAAGCAAAA...TGTGCATTTGGCTCCTGTGCAGCTGGCAATCTCCAAGTGCCTGTGGGGACTCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR CAA 90 bp | TTACAGTCTAACCAGCAGCTGTGGCCTTGCTGTACTCCTGAGTGTTaGATGCTGAATCGGACTGCCCTGCTACTAAACCAGGTGGAAAGG | + |
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Preference number: 2 (lower is better) Translates to: LQSNQQLWPCCTPEC*MLNRTALLLNQVER Trigger: CCTTTCCACCTGGTTTAGTAGCAGGGCAGTCCGATTCAGCATCAAACACTCAGGAGTACAGCAAGGCCACAGCTGCTGGTTAGACTGTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR CAA 90 bp | GCTGATGAAGTACAGATGCAAAGAGTCCCCACAGGCACTTGGAGATaGCCAGCTGCACAGGAGCCAAATGCACATCTGTGTTCACTAGAC | + |
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Preference number: 2 (lower is better) Translates to: ADEVQMQRVPTGTWR*PAAQEPNAHLCSLD Trigger: GTCTAGTGAACACAGATGTGCATTTGGCTCCTGTGCAGCTGGCAATCTCCAAGTGCCTGTGGGGACTCTTTGCATCTGTACTTCATCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR-3UTR GCA 90 bp | AAACAGCTGGACCTCAGTATGTACAGAGCTGTCCCATGCCTCCTGCCTTGGTCTCTGATGAAGTACAGATaGAAAGAGTCCCCACAGGCA | + |
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Preference number: 2 (lower is better) Translates to: KQLDLSMYRAVPCLLPWSLMKYR*KESPQA Trigger: TGCCTGTGGGGACTCTTTGCATCTGTACTTCATCAG...AGACCAAGGCAGGAGGCATGGGACAGCTCTGTACATACTGAGGTCCAGCTGTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR-3UTR GCA 90 bp | AAACAGCTGGACCTCAGTATGTACAGAGCTGTCCCATGCCTCCTGCCTTGGTCTCACCTCCTCTCTGTCTaGTGTTTGGCTGATGAAGTA | + |
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Preference number: 2 (lower is better) Translates to: KQLDLSMYRAVPCLLPWSHLLSV*CLADEV Trigger: TACTTCATCAGCCAAACAGCAGACAGAGAGGAGGTG...AGACCAAGGCAGGAGGCATGGGACAGCTCTGTACATACTGAGGTCCAGCTGTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR-3UTR TCA 90 bp | GTCCCCACAGGCACTTGGAGATTGCCAGCTGCACAGGAGCCAAATGCACATCTGAGCATCCTCTGCCTTTaGTGTCTTTTATTCTTGCAT | + |
|
Preference number: 2 (lower is better) Translates to: VPTGTWRLPAAQEPNAHLSILCL*CLLFLH Trigger: ATGCAAGAATAAAAGACATCAAAGGCAGAGGATGCT...CAGATGTGCATTTGGCTCCTGTGCAGCTGGCAATCTCCAAGTGCCTGTGGGGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR-3UTR GCA 90 bp | AAACAGCTGGACCTCAGTATGTACAGAGCTGTCCCATGCCTCCTGCCTTGGTCTTGCACAGGAGCCAAATaGACATCTGTGTTCACTAGA | + |
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Preference number: 2 (lower is better) Translates to: KQLDLSMYRAVPCLLPWSCTGAK*TSVFTR Trigger: TCTAGTGAACACAGATGTGCATTTGGCTCCTGTGCA...AGACCAAGGCAGGAGGCATGGGACAGCTCTGTACATACTGAGGTCCAGCTGTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR-3UTR CCA 90 bp | CCAGCATCCTCTGCCTTTGATGTCTTTTATTCTTGCATAATGGGCTGGCTTCCTTCTAACCAGCAGCTGTaGCCTTGCTGTACTCCTGAG | + |
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Preference number: 2 (lower is better) Translates to: PASSAFDVFYSCIMGWLPSNQQL*PCCTPE Trigger: CTCAGGAGTACAGCAAGGCCACAGCTGCTGGTTAGA...AGGAAGCCAGCCCATTATGCAAGAATAAAAGACATCAAAGGCAGAGGATGCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR-3UTR TCA 90 bp | TTCTTACAGTCTAACCAGCAGCTGTGGCCTTGCTGTACTCCTGAGTGTTTGATGTCGACTAGGACAAAATaGGAGCAGAGACAAATCTAT | + |
|
Preference number: 2 (lower is better) Translates to: FLQSNQQLWPCCTPECLMSTRTK*EQRQIY Trigger: ATAGATTTGTCTCTGCTCTCATTTTGTCCTAGTCGA...CATCAAACACTCAGGAGTACAGCAAGGCCACAGCTGCTGGTTAGACTGTAAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR GCA 72 bp | TACAGATGCAAAGAGTCCCCACAGGCACTTGGAGATTaGCAGCTGCACAGGAGCCAAATGCACATCTGTGTT | + |
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Preference number: 3 (lower is better) Translates to: YRCKESPQALGD*QLHRSQMHICV Trigger: AACACAGATGTGCATTTGGCTCCTGTGCAGCTGGCAATCTCCAAGTGCCTGTGGGGACTCTTTGCATCTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR GCA 72 bp | TCCTCTCTGTCTGCTGTTTGGCTGATGAAGTACAGATaGAAAGAGTCCCCACAGGCACTTGGAGATTGCCAG | + |
|
Preference number: 3 (lower is better) Translates to: SSLSAVWLMKYR*KESPQALGDCQ Trigger: CTGGCAATCTCCAAGTGCCTGTGGGGACTCTTTGCATCTGTACTTCATCAGCCAAACAGCAGACAGAGAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR CCA 72 bp | GATGAAGTACAGATGCAAAGAGTCCCCACAGGCACTTaGAGATTGCCAGCTGCACAGGAGCCAAATGCACAT | + |
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Preference number: 3 (lower is better) Translates to: DEVQMQRVPTGT*RLPAAQEPNAH Trigger: ATGTGCATTTGGCTCCTGTGCAGCTGGCAATCTCCAAGTGCCTGTGGGGACTCTTTGCATCTGTACTTCATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR-3UTR CAA 90 bp | AAGAGTCCCCACAGGCACTTGGAGATTGCCAGCTGCACAGGAGCCAAATGCACAGCTGGCTTCCTCTTCTaGAACCATTATAACATCTGT | + |
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Preference number: 3 (lower is better) Translates to: KSPHRHLEIASCTGAKCTAGFLF*NHYNIC Trigger: ACAGATGTTATAATGGTTCAAGAAGAGGAAGCCAGC...TGTGCATTTGGCTCCTGTGCAGCTGGCAATCTCCAAGTGCCTGTGGGGACTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR TCA 72 bp | TATGTACAGAGCTGTCCCATGCCTCCTGCCTTGGTCTaGACACTAGATACTCTGCTTTTCACCCTTTTAGTC | + |
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Preference number: 3 (lower is better) Translates to: YVQSCPMPPALV*TLDTLLFTLLV Trigger: GACTAAAAGGGTGAAAAGCAGAGTATCTAGTGTTCAGACCAAGGCAGGAGGCATGGGACAGCTCTGTACATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR GCA 72 bp | GCTTTTCACCCTTTTAGTCCTCACCTCCTCTCTGTCTaGTGTTTGGCTGATGAAGTACAGATGCAAAGAGTC | + |
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Preference number: 3 (lower is better) Translates to: AFHPFSPHLLSV*CLADEVQMQRV Trigger: GACTCTTTGCATCTGTACTTCATCAGCCAAACAGCAGACAGAGAGGAGGTGAGGACTAAAAGGGTGAAAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR CCA 72 bp | AGAGTCCAAATGTTCTTACAGTCTAACCAGCAGCTGTaGCCTTGCTGTACTCCTGAGTGTTTGATGCTGAAT | + |
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Preference number: 3 (lower is better) Translates to: RVQMFLQSNQQL*PCCTPECLMLN Trigger: ATTCAGCATCAAACACTCAGGAGTACAGCAAGGCCACAGCTGCTGGTTAGACTGTAAGAACATTTGGACTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR TCA 72 bp | TATAACATCTGTAATGAGGGTCTTCAGAGGAGAGGATaGTCAGAGTTGGACTCTCAAGATAGGAAGGAAGAA | + |
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Preference number: 3 (lower is better) Translates to: YNICNEGLQRRG*SELDSQDRKEE Trigger: TTCTTCCTTCCTATCTTGAGAGTCCAACTCTGATCATCCTCTCCTCTGAAGACCCTCATTACAGATGTTATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR TCA 72 bp | CTTTTATTCTTGCATAATGGGCTGGCTTCCTCTTCTTaGACCATTATAACATCTGTAATGAGGGTCTTCAGA | + |
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Preference number: 3 (lower is better) Translates to: LLFLHNGLASSS*TIITSVMRVFR Trigger: TCTGAAGACCCTCATTACAGATGTTATAATGGTTCAAGAAGAGGAAGCCAGCCCATTATGCAAGAATAAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS-3UTR CCA 90 bp | AAGAGTCCCCACAGGCACTTGGAGATTGCCAGCTGCACAGGAGCCAAATGCACAGCGGCACTGGCTCGGTaGTCATCATCTCAGTGGACA | + |
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Preference number: 4 (lower is better) Translates to: KSPHRHLEIASCTGAKCTAALAR*SSSQWT Trigger: TGTCCACTGAGATGATGACCACCGAGCCAGTGCCGC...TGTGCATTTGGCTCCTGTGCAGCTGGCAATCTCCAAGTGCCTGTGGGGACTCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS-3UTR GCA 90 bp | GTCCCCACAGGCACTTGGAGATTGCCAGCTGCACAGGAGCCAAATGCACATCTGAGGTGGGATGTGCACTaGTGGTGTGTCTTTCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: VPTGTWRLPAAQEPNAHLRWDVH*WCVFPP Trigger: AGGAGGAAAGACACACCAGCAGTGCACATCCCACCT...CAGATGTGCATTTGGCTCCTGTGCAGCTGGCAATCTCCAAGTGCCTGTGGGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS-3UTR GCA 90 bp | AAGAGTCCCCACAGGCACTTGGAGATTGCCAGCTGCACAGGAGCCAAATGCACAGAGCAGAGTCAGACCTaGAACAAAGGGAGGCATGTG | + |
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Preference number: 4 (lower is better) Translates to: KSPHRHLEIASCTGAKCTEQSQT*NKGRHV Trigger: CACATGCCTCCCTTTGTTGCAGGTCTGACTCTGCTC...TGTGCATTTGGCTCCTGTGCAGCTGGCAATCTCCAAGTGCCTGTGGGGACTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS-3UTR TCA 90 bp | GTCCCCACAGGCACTTGGAGATTGCCAGCTGCACAGGAGCCAAATGCACATCTGATGAAGAGCTGGGCCTaGTTTGGCCTTTGGAATTCT | + |
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Preference number: 4 (lower is better) Translates to: VPTGTWRLPAAQEPNAHLMKSWA*FGLWNS Trigger: AGAATTCCAAAGGCCAAATCAGGCCCAGCTCTTCAT...CAGATGTGCATTTGGCTCCTGTGCAGCTGGCAATCTCCAAGTGCCTGTGGGGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| 3UTR CAA 72 bp | AACCAGCAGCTGTGGCCTTGCTGTACTCCTGAGTGTTaGATGCTGAATCGGACTGCCCTGCTACTAAACCAG | + |
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Preference number: 4 (lower is better) Translates to: NQQLWPCCTPEC*MLNRTALLLNQ Trigger: CTGGTTTAGTAGCAGGGCAGTCCGATTCAGCATCAAACACTCAGGAGTACAGCAAGGCCACAGCTGCTGGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS-3UTR GCA 90 bp | TTCTTACAGTCTAACCAGCAGCTGTGGCCTTGCTGTACTCCTGAGTGTTTGATGGGTCATCTGAGGGGCTaGACTGAGGATCCAGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: FLQSNQQLWPCCTPECLMGHLRG*TEDPAC Trigger: GCAAGCTGGATCCTCAGTGCAGCCCCTCAGATGACC...CATCAAACACTCAGGAGTACAGCAAGGCCACAGCTGCTGGTTAGACTGTAAGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS-3UTR TCA 90 bp | CCAGCATCCTCTGCCTTTGATGTCTTTTATTCTTGCATAATGGGCTGGCTTCCTTCTGAGGGGCTGCACTaGGGATCCAGCTTGCCTAGT | + |
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Preference number: 4 (lower is better) Translates to: PASSAFDVFYSCIMGWLPSEGLH*GSSLPS Trigger: ACTAGGCAAGCTGGATCCTCAGTGCAGCCCCTCAGA...AGGAAGCCAGCCCATTATGCAAGAATAAAAGACATCAAAGGCAGAGGATGCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS-3UTR CCA 90 bp | TTCTTACAGTCTAACCAGCAGCTGTGGCCTTGCTGTACTCCTGAGTGTTTGATGTGGGATGTGCACTGCTaGTGTGTCTTTCCTCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: FLQSNQQLWPCCTPECLMWDVHC*CVFPPG Trigger: CCCAGGAGGAAAGACACACCAGCAGTGCACATCCCA...CATCAAACACTCAGGAGTACAGCAAGGCCACAGCTGCTGGTTAGACTGTAAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS-3UTR CCA 90 bp | CCAGCATCCTCTGCCTTTGATGTCTTTTATTCTTGCATAATGGGCTGGCTTCCTACCTGGGATGAAAGGTaGGATGTGCACTGCTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: PASSAFDVFYSCIMGWLPTWDER*DVHCWC Trigger: ACACCAGCAGTGCACATCCCACCTTTCATCCCAGGT...AGGAAGCCAGCCCATTATGCAAGAATAAAAGACATCAAAGGCAGAGGATGCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS-3UTR TCA 90 bp | CCAGCATCCTCTGCCTTTGATGTCTTTTATTCTTGCATAATGGGCTGGCTTCCTAAATCACACCTGGGATaGAAGGTGGGATGTGCACTG | + |
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Preference number: 4 (lower is better) Translates to: PASSAFDVFYSCIMGWLPKSHLG*KVGCAL Trigger: CAGTGCACATCCCACCTTTCATCCCAGGTGTGATTT...AGGAAGCCAGCCCATTATGCAAGAATAAAAGACATCAAAGGCAGAGGATGCTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS-3UTR CCA 90 bp | TTCTTACAGTCTAACCAGCAGCTGTGGCCTTGCTGTACTCCTGAGTGTTTGATGGAGCTGGGCCTGATTTaGCCTTTGGAATTCTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: FLQSNQQLWPCCTPECLMELGLI*PLEFSL Trigger: AAGAGAGAATTCCAAAGGCCAAATCAGGCCCAGCTC...CATCAAACACTCAGGAGTACAGCAAGGCCACAGCTGCTGGTTAGACTGTAAGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS-3UTR GCA 90 bp | CCAGCATCCTCTGCCTTTGATGTCTTTTATTCTTGCATAATGGGCTGGCTTCCTATGAAAGGTGGGATGTaGACTGCTGGTGTGTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: PASSAFDVFYSCIMGWLPMKGGM*TAGVSF Trigger: GAAAGACACACCAGCAGTGCACATCCCACCTTTCAT...AGGAAGCCAGCCCATTATGCAAGAATAAAAGACATCAAAGGCAGAGGATGCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS-3UTR CCA 90 bp | TTCTTACAGTCTAACCAGCAGCTGTGGCCTTGCTGTACTCCTGAGTGTTTGATGACTCAACATTCAGAGTaGCCTGTACATTCTTCCCCT | + |
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Preference number: 4 (lower is better) Translates to: FLQSNQQLWPCCTPECLMTQHSE*PVHSSP Trigger: AGGGGAAGAATGTACAGGCCACTCTGAATGTTGAGT...CATCAAACACTCAGGAGTACAGCAAGGCCACAGCTGCTGGTTAGACTGTAAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS-3UTR CCA 90 bp | AGAAAGGAAAGACAAAGAGGTGACCTGACCAGCAATCTGAGTAGTAGGTCTCCTTTCCGAAATCACACCTaGGATGAAAGGTGGGATGTG | + |
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Preference number: 4 (lower is better) Translates to: RKERQRGDLTSNLSSRSPFRNHT*DERWDV Trigger: CACATCCCACCTTTCATCCCAGGTGTGATTTCGGAA...AGGAGACCTACTACTCAGATTGCTGGTCAGGTCACCTCTTTGTCTTTCCTTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS-3UTR TCA 90 bp | CCAGCATCCTCTGCCTTTGATGTCTTTTATTCTTGCATAATGGGCTGGCTTCCTTCCATATCAGAGTTATaGAGAGCTGGGCCTGATTTG | + |
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Preference number: 4 (lower is better) Translates to: PASSAFDVFYSCIMGWLPSISEL*RAGPDL Trigger: CAAATCAGGCCCAGCTCTTCATAACTCTGATATGGA...AGGAAGCCAGCCCATTATGCAAGAATAAAAGACATCAAAGGCAGAGGATGCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS-3UTR CCA 90 bp | AGAAAGGAAAGACAAAGAGGTGACCTGACCAGCAATCTGAGTAGTAGGTCTCCTGTGTGTCTTTCCTCCTaGGTTTCTTTTGATCTGACT | + |
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Preference number: 4 (lower is better) Translates to: RKERQRGDLTSNLSSRSPVCLSS*VSFDLT Trigger: AGTCAGATCAAAAGAAACCCAGGAGGAAAGACACAC...AGGAGACCTACTACTCAGATTGCTGGTCAGGTCACCTCTTTGTCTTTCCTTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS-3UTR CAA 90 bp | GTCCCCACAGGCACTTGGAGATTGCCAGCTGCACAGGAGCCAAATGCACATCTGAGAGCTGGGCCTGATTaGGCCTTTGGAATTCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: VPTGTWRLPAAQEPNAHLRAGPD*AFGILS Trigger: AGAGAGAATTCCAAAGGCCAAATCAGGCCCAGCTCT...CAGATGTGCATTTGGCTCCTGTGCAGCTGGCAATCTCCAAGTGCCTGTGGGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS TCA 90 bp | CAGTCCTTAATGAACTGGTCTGAAAGGTCATCTGAGGGGCTGCACTaGGGATCCAGCTTGCCTAGTATGTCGTCTGAAAGCTCCAGAGGC | + |
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Preference number: 5 (lower is better) Translates to: QSLMNWSERSSEGLH*GSSLPSMSSESSRG Trigger: GCCTCTGGAGCTTTCAGACGACATACTAGGCAAGCTGGATCCTCAGTGCAGCCCCTCAGATGACCTTTCAGACCAGTTCATTAAGGACTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS TCA 90 bp | GGTGGGATGTGCACTGCTGGTGTGTCTTTCCTCCTGGGTTTCTTTTaGTCTGACTCAACATTCAGAGTGGCCTGTACATTCTTCCCCTTC | + |
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Preference number: 5 (lower is better) Translates to: GGMCTAGVSFLLGFF*SDSTFRVACTFFPF Trigger: GAAGGGGAAGAATGTACAGGCCACTCTGAATGTTGAGTCAGATCAAAAGAAACCCAGGAGGAAAGACACACCAGCAGTGCACATCCCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS-3UTR CAA 90 bp | AAACAGCTGGACCTCAGTATGTACAGAGCTGTCCCATGCCTCCTGCCTTGGTCTTCTCCTTGGCCTTTTTaGTTCCATATCAGAGTTATG | + |
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Preference number: 5 (lower is better) Translates to: KQLDLSMYRAVPCLLPWSSPWPF*FHIRVM Trigger: CATAACTCTGATATGGAACAAAAAAGGCCAAGGAGA...AGACCAAGGCAGGAGGCATGGGACAGCTCTGTACATACTGAGGTCCAGCTGTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS-3UTR CAA 90 bp | AGAAAGGAAAGACAAAGAGGTGACCTGACCAGCAATCTGAGTAGTAGGTCTCCTTTCCTTGGCTTCTTTTaGAGGTCACAGTCCTTAATG | + |
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Preference number: 5 (lower is better) Translates to: RKERQRGDLTSNLSSRSPFLGFF*RSQSLM Trigger: CATTAAGGACTGTGACCTCAAAAAGAAGCCAAGGAA...AGGAGACCTACTACTCAGATTGCTGGTCAGGTCACCTCTTTGTCTTTCCTTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS GCA 72 bp | CACTCCTGCACTCTCATCCCGGAGCAGAGTCAGACCTaGAACAAAGGGAGGCATGTGCAAGGCAGGCGTGTC | + |
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Preference number: 6 (lower is better) Translates to: HSCTLIPEQSQT*NKGRHVQGRRV Trigger: GACACGCCTGCCTTGCACATGCCTCCCTTTGTTGCAGGTCTGACTCTGCTCCGGGATGAGAGTGCAGGAGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS GCA 72 bp | AAAGGTCATCTGAGGGGCTGCACTGAGGATCCAGCTTaGCTAGTATGTCGTCTGAAAGCTCCAGAGGCGGCA | + |
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Preference number: 6 (lower is better) Translates to: KGHLRGCTEDPA*LVCRLKAPEAA Trigger: TGCCGCCTCTGGAGCTTTCAGACGACATACTAGGCAAGCTGGATCCTCAGTGCAGCCCCTCAGATGACCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS TCA 72 bp | ATGAACTGGTCTGAAAGGTCATCTGAGGGGCTGCACTaGGGATCCAGCTTGCCTAGTATGTCGTCTGAAAGC | + |
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Preference number: 6 (lower is better) Translates to: MNWSERSSEGLH*GSSLPSMSSES Trigger: GCTTTCAGACGACATACTAGGCAAGCTGGATCCTCAGTGCAGCCCCTCAGATGACCTTTCAGACCAGTTCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS TCA 72 bp | TGCTGGTGTGTCTTTCCTCCTGGGTTTCTTTTGATCTaGCTCAACATTCAGAGTGGCCTGTACATTCTTCCC | + |
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Preference number: 6 (lower is better) Translates to: CWCVFPPGFLLI*LNIQSGLYILP Trigger: GGGAAGAATGTACAGGCCACTCTGAATGTTGAGTCAGATCAAAAGAAACCCAGGAGGAAAGACACACCAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS TCA 72 bp | TGCACTGCTGGTGTGTCTTTCCTCCTGGGTTTCTTTTaGTCTGACTCAACATTCAGAGTGGCCTGTACATTC | + |
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Preference number: 6 (lower is better) Translates to: CTAGVSFLLGFF*SDSTFRVACTF Trigger: GAATGTACAGGCCACTCTGAATGTTGAGTCAGATCAAAAGAAACCCAGGAGGAAAGACACACCAGCAGTGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS TCA 72 bp | AGAGCTGGGCCTGATTTGGCCTTTGGAATTCTCTCTTaGACATCATATCTTTTGATTAAGTGTTCCGAAATC | + |
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Preference number: 6 (lower is better) Translates to: RAGPDLAFGILS*TSYLLIKCSEI Trigger: GATTTCGGAACACTTAATCAAAAGATATGATGTTCAAGAGAGAATTCCAAAGGCCAAATCAGGCCCAGCTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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| CDS TCA 72 bp | TTTTTGTTCCATATCAGAGTTATGAAGAGCTGGGCCTaGTTTGGCCTTTGGAATTCTCTCTTGAACATCATA | + |
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Preference number: 6 (lower is better) Translates to: FLFHIRVMKSWA*FGLWNSLLNII Trigger: TATGATGTTCAAGAGAGAATTCCAAAGGCCAAATCAGGCCCAGCTCTTCATAACTCTGATATGGAACAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052827.6 |
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