Pregenerated sensors for PPP1R14B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000056612

Ensembl transcript IDs: ENSMUST00000237084.2, ENSMUST00000237235.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR TCA 90 bp	ACTAACAGCTCCTGGCAAGGGAGAACACAGCACATAGTGACTTCTTaGGGACAGGGGCTCTCAGTTCACCTATACCCTCCCCAGGGACTG	+
Preference number: 1 (lower is better) Translates to: TNSSWQGRTQHIVTS*GQGLSVHLYPPQGL Trigger: CAGTCCCTGGGGAGGGTATAGGTGAACTGAGAGCCCCTGTCCTCAAGAAGTCACTATGTGCTGTGTTCTCCCTTGCCAGGAGCTGTTAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237235.2
3UTR-3UTR CCA 90 bp	TACCCTCCCCAGGGACTGAGGCCACTTAGGAACATAGCTAAGTTAAGTTCCGTGGCAGCGATTGTCCTGTaGGAGCCACGGCCGTCTGAG	+
Preference number: 2 (lower is better) Translates to: YPPQGLRPLRNIAKLSSVAAIVL*EPRPSE Trigger: CTCAGACGGCCGTGGCTCCCACAGGACAATCGCTGC...CACGGAACTTAACTTAGCTATGTTCCTAAGTGGCCTCAGTCCCTGGGGAGGGTA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237235.2
3UTR-3UTR CCA 90 bp	AGAGGCCAGGATCCCGATGATAAGCTGCACACATACACACCCACCCTAAGGGCATCAACTAACAGCTCCTaGCAAGGGAGAACACAGCAC	+
Preference number: 2 (lower is better) Translates to: RGQDPDDKLHTYTPTLRASTNSS*QGRTQH Trigger: GTGCTGTGTTCTCCCTTGCCAGGAGCTGTTAGTTGA...TGCCCTTAGGGTGGGTGTGTATGTGTGCAGCTTATCATCGGGATCCTGGCCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000237235.2
3UTR-3UTR TCA 90 bp	GCACACATACACACCCACCCTAAGGGCAAGGAGAATAGCTTACCTCAGTGGGTTTTTTCCAGAGGCAGATaGCCCAAACCAAAGAAGGTA	+
Preference number: 2 (lower is better) Translates to: AHIHTHPKGKENSLPQWVFSRGR*PKPKKV Trigger: TACCTTCTTTGGTTTGGGTCATCTGCCTCTGGAAAA...AACCCACTGAGGTAAGCTATTCTCCTTGCCCTTAGGGTGGGTGTGTATGTGTGC 49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000237235.2
3UTR TCA 72 bp	TCCTGGCAAGGGAGAACACAGCACATAGTGACTTCTTaGGGACAGGGGCTCTCAGTTCACCTATACCCTCCC	+
Preference number: 3 (lower is better) Translates to: SWQGRTQHIVTS*GQGLSVHLYPP Trigger: GGGAGGGTATAGGTGAACTGAGAGCCCCTGTCCTCAAGAAGTCACTATGTGCTGTGTTCTCCCTTGCCAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237235.2
CDS GCA 72 bp	GGGGCTGTTAGAGAGGCCAGGATCCCGATGATAAGCTaGACACATACACACCCACCCTTGACCCTAGCAGCC	+
Preference number: 6 (lower is better) Translates to: GAVREARIPMIS*THTHPPLTLAA Trigger: GGCTGCTAGGGTCAAGGGTGGGTGTGTATGTGTGCAGCTTATCATCGGGATCCTGGCCTCTCTAACAGCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000237084.2

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