RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PPP1R12C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000019254

Ensembl transcript IDs: ENSMUST00000013886.9, ENSMUST00000124248.8, ENSMUST00000125220.3

Found 215 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCTCAGCAACGTCTCCCTACTTGGCTCAGCCTCCCATCTCTATCCTaGTCTCAGAGAGTCCCCCTTGGTTCCTGGGGACTCTGTGCTTTC +
Preference number: 1 (lower is better)
Translates to: SQQRLPTWLSLPSLS*SQRVPLGSWGLCAF
Trigger: GAAAGCACAGAGTCCCCAGGAACCAAGGGGGACTCTCTGAGATCAGGATAGAGATGGGAGGCTGAGCCAAGTAGGGAGACGTTGCTGAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
3UTR CCA 90 bp GATCTTTGTGTCTCTTGGTCCTTGCTTCCTTCTTGGTCCCATCTCTaGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGCC +
Preference number: 1 (lower is better)
Translates to: DLCVSWSLLPSWSHL*CLSTLSNVSLLGSA
Trigger: GGCTGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGGACCAAGAGACACAAAGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
3UTR TCA 90 bp ACACGTGAGGTGGGATCCTGGGGCAACCACTCTGCTTCTGGATACTaGTCTTTGTGTCTCTTGGTCCTTGCTTCCTTCTTGGTCCCATCT +
Preference number: 1 (lower is better)
Translates to: TREVGSWGNHSASGY*SLCLLVLASFLVPS
Trigger: AGATGGGACCAAGAAGGAAGCAAGGACCAAGAGACACAAAGATCAGTATCCAGAAGCAGAGTGGTTGCCCCAGGATCCCACCTCACGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
3UTR GCA 90 bp CAACCACTCTGCTTCTGGATACTGATCTTTGTGTCTCTTGGTCCTTaGTTCCTTCTTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCA +
Preference number: 1 (lower is better)
Translates to: QPLCFWILIFVSLGP*FLLGPISGACPLSA
Trigger: TGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGGACCAAGAGACACAAAGATCAGTATCCAGAAGCAGAGTGGTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
3UTR CCA 90 bp CTTCTGGATACTGATCTTTGTGTCTCTTGGTCCTTGCTTCCTTCTTaGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTA +
Preference number: 1 (lower is better)
Translates to: LLDTDLCVSWSLLPS*SHLWCLSTLSNVSL
Trigger: TAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGGACCAAGAGACACAAAGATCAGTATCCAGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
3UTR-3UTR TCA 90 bp TTCTTCTTCAGCCCGCTTGGCTGCCTCGACATCCACACCTCGGCGAGTGATCTCCCCCTCCATGGCATCTaGCTCAGCCAGGTCCAAAGG +
Preference number: 2 (lower is better)
Translates to: FFFSPLGCLDIHTSASDLPLHGI*LSQVQR
Trigger: CCTTTGGACCTGGCTGAGTCAGATGCCATGGAGGGG...GAGATCACTCGCCGAGGTGTGGATGTCGAGGCAGCCAAGCGGGCTGAAGAAGAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000125220.3
3UTR-3UTR CCA 90 bp CTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGCCTCCCATCTGTCCCCCTTGGTTCCTaGGGACTCTGTGCTTTCCTC +
Preference number: 2 (lower is better)
Translates to: LVPVHSQQRLPTWLSLPSVPLGS*GLCAFL
Trigger: GAGGAAAGCACAGAGTCCCCAGGAACCAAGGGGGAC...AGATGGGAGGCTGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
3UTR-3UTR CCA 90 bp AGCAATTCTTCTTCAGCCCGCTTGGCTGCCTCGACATCCACACCTCGGCGAGTGTCAGCAGCCCCTCCATaGCATCTGACTCAGCCAGGT +
Preference number: 2 (lower is better)
Translates to: SNSSSARLAASTSTPRRVSAAPP*HLTQPG
Trigger: ACCTGGCTGAGTCAGATGCCATGGAGGGGCTGCTGA...CACTCGCCGAGGTGTGGATGTCGAGGCAGCCAAGCGGGCTGAAGAAGAATTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125220.3
3UTR CAA 90 bp GGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTaGGCTCAGCCTCCCATCTCTATCCTGATCTCAGAGAGTCCCCCT +
Preference number: 2 (lower is better)
Translates to: GPISGACPLSATSPY*AQPPISILISESPP
Trigger: AGGGGGACTCTCTGAGATCAGGATAGAGATGGGAGGCTGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
3UTR-3UTR TCA 90 bp CTTCTTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGCTTTCCTCCCGGTTCTaGGGTCCCGAGAGGTTATGG +
Preference number: 2 (lower is better)
Translates to: LLGPISGACPLSATSPYLLSSRF*GPERLW
Trigger: CCATAACCTCTCGGGACCTCAGAACCGGGAGGAAAG...CAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
3UTR-3UTR TCA 90 bp TTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCCTCCCATCTCTATCCTaGTCTCAGAGAGTCCCCCTT +
Preference number: 2 (lower is better)
Translates to: LVPSLVPVHSQQRLPTWLLPSLS*SQRVPL
Trigger: AAGGGGGACTCTCTGAGATCAGGATAGAGATGGGAG...GAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
3UTR-3UTR CCA 90 bp CTTTGTGTCTCTTGGTCCTTGCTTCCTTCTTGGTCCCATCTCTGGTGCCTGTCCCAACGTCTCCCTACTTaGCTCAGCCTCCCATCTCTA +
Preference number: 2 (lower is better)
Translates to: LCVSWSLLPSWSHLWCLSQRLPT*LSLPSL
Trigger: TAGAGATGGGAGGCTGAGCCAAGTAGGGAGACGTTG...GGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGGACCAAGAGACACAAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
3UTR-3UTR CCA 90 bp TGGGATCCTGGGGCAACCACTCTGCTTCTGGATACTGATCTTTGTGTCTCTTGGTCTTGGTCCCATCTCTaGTGCCTGTCCACTCTCAGC +
Preference number: 2 (lower is better)
Translates to: WDPGATTLLLDTDLCVSWSWSHL*CLSTLS
Trigger: GCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGA...CCAAGAGACACAAAGATCAGTATCCAGAAGCAGAGTGGTTGCCCCAGGATCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
3UTR-3UTR CCA 90 bp ACTCTGCTTCTGGATACTGATCTTTGTGTCTCTTGGTCCTTGCTTCCTTCTTGGCAACGTCTCCCTACTTaGCTCAGCCTCCCATCTCTA +
Preference number: 2 (lower is better)
Translates to: TLLLDTDLCVSWSLLPSWQRLPT*LSLPSL
Trigger: TAGAGATGGGAGGCTGAGCCAAGTAGGGAGACGTTG...CCAAGAAGGAAGCAAGGACCAAGAGACACAAAGATCAGTATCCAGAAGCAGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
3UTR-3UTR CAA 90 bp GGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGCCTCCCATCTCTCTCAGAGAGTCCCCCTaGGTTCCTGGGGACTCTGTG +
Preference number: 3 (lower is better)
Translates to: GACPLSATSPYLAQPPISLRESP*VPGDSV
Trigger: CACAGAGTCCCCAGGAACCAAGGGGGACTCTCTGAG...AGAGATGGGAGGCTGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
3UTR-3UTR CAA 90 bp TTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCCTCAGAGAGTCCCCCTaGGTTCCTGGGGACTCTGTG +
Preference number: 3 (lower is better)
Translates to: LVPSLVPVHSQQRLPTWLLRESP*VPGDSV
Trigger: CACAGAGTCCCCAGGAACCAAGGGGGACTCTCTGAG...GAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
3UTR TCA 72 bp CGTCTCCCTACTTGGCTCAGCCTCCCATCTCTATCCTaGTCTCAGAGAGTCCCCCTTGGTTCCTGGGGACTC +
Preference number: 3 (lower is better)
Translates to: RLPTWLSLPSLS*SQRVPLGSWGL
Trigger: GAGTCCCCAGGAACCAAGGGGGACTCTCTGAGATCAGGATAGAGATGGGAGGCTGAGCCAAGTAGGGAGACG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
3UTR GCA 72 bp GTCATGAAGCAGCAATTCTTCTTCAGCCCGCTTGGCTaGCTCGACATCCACACCTCGGCGAGTGATCTCTGC +
Preference number: 3 (lower is better)
Translates to: VMKQQFFFSPLG*LDIHTSASDLC
Trigger: GCAGAGATCACTCGCCGAGGTGTGGATGTCGAGGCAGCCAAGCGGGCTGAAGAAGAATTGCTGCTTCATGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125220.3
3UTR-3UTR CAA 90 bp CTTTGTGTCTCTTGGTCCTTGCTTCCTTCTTGGTCCCATCTCTGGTGCCTGTCCGCAACGTCTCCCTACTaGGCTCAGCCTCCCATCTCT +
Preference number: 3 (lower is better)
Translates to: LCVSWSLLPSWSHLWCLSATSPY*AQPPIS
Trigger: AGAGATGGGAGGCTGAGCCAAGTAGGGAGACGTTGC...GGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGGACCAAGAGACACAAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
3UTR GCA 72 bp TCTTGGTCCTTGCTTCCTTCTTGGTCCCATCTCTGGTaGCTGTCCACTCTCAGCAACGTCTCCCTACTTGGC +
Preference number: 3 (lower is better)
Translates to: SWSLLPSWSHLW*LSTLSNVSLLG
Trigger: GCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGGACCAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
3UTR CCA 72 bp GTCTCTTGGTCCTTGCTTCCTTCTTGGTCCCATCTCTaGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTT +
Preference number: 3 (lower is better)
Translates to: VSWSLLPSWSHL*CLSTLSNVSLL
Trigger: AAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGGACCAAGAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
3UTR TCA 72 bp GTGGGATCCTGGGGCAACCACTCTGCTTCTGGATACTaGTCTTTGTGTCTCTTGGTCCTTGCTTCCTTCTTG +
Preference number: 3 (lower is better)
Translates to: VGSWGNHSASGY*SLCLLVLASFL
Trigger: CAAGAAGGAAGCAAGGACCAAGAGACACAAAGATCAGTATCCAGAAGCAGAGTGGTTGCCCCAGGATCCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp CTTCTTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGCCCCACTGCCGCAGCTaGTCCTGCCGCCGCTCACGG +
Preference number: 4 (lower is better)
Translates to: LLGPISGACPLSATSPYLPHCRS*SCRRSR
Trigger: CCGTGAGCGGCGGCAGGAGCAGCTGCGGCAGTGGGG...CAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013886.9
CDS-3UTR GCA 90 bp TATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGTTCACGCGGGGGCCCTTCGGGCGCCTCTaGTCTCTGGGCAGGGCCCTC +
Preference number: 4 (lower is better)
Translates to: YGFSAISPRALSLMFTRGPFGRL*SLGRAL
Trigger: GAGGGCCCTGCCCAGAGAGCAGAGGCGCCCGAAGGG...CCCCCGCGTGAACATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp CTGATCTCAGAGAGTCCCCCTTGGTTCCTGGGGACTCTGTGCTTTCCTCCCGGTGGCGCCTCTGCTCTCTaGGCAGGGCCCTCAGCGTTC +
Preference number: 4 (lower is better)
Translates to: LISESPPWFLGTLCFPPGGASAL*AGPSAF
Trigger: GAACGCTGAGGGCCCTGCCCAGAGAGCAGAGGCGCC...ACCGGGAGGAAAGCACAGAGTCCCCAGGAACCAAGGGGGACTCTCTGAGATCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000124248.8
CDS-3UTR TCA 90 bp CAATTCTTCTTCAGCCCGCTTGGCTGCCTCGACATCCACACCTCGGCGAGTGATCCTGGTGCAGGGCGCTaGTGCCATCCGCGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: QFFFSPLGCLDIHTSASDPGAGR*CHPRWW
Trigger: CCACCAACGCGGATGGCATCAGCGCCCTGCACCAGG...ATCACTCGCCGAGGTGTGGATGTCGAGGCAGCCAAGCGGGCTGAAGAAGAATTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125220.3
CDS-3UTR GCA 90 bp GGTAGCATCACACGTGAGGTGGGATCCTGGGGCAACCACTCTGCTTCTGGATACAATAGGAGGCCCTCCTaGCCCACCAGGCCGGCGCTC +
Preference number: 4 (lower is better)
Translates to: GSITREVGSWGNHSASGYNRRPS*PTRPAL
Trigger: GAGCGCCGGCCTGGTGGGGCAGGAGGGCCTCCTATT...GTATCCAGAAGCAGAGTGGTTGCCCCAGGATCCCACCTCACGTGTGATGCTACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp TGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCATGTGGTCCCTGGCCCTaGCCTTCGGGCGCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: WSHLWCLSTLSNVSLLGSCGPWP*PSGASA
Trigger: AGCAGAGGCGCCCGAAGGGCAGGGCCAGGGACCACA...TGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp GAGAGTCCCCCTTGGTTCCTGGGGACTCTGTGCTTTCCTCCCGGTTCTGAGGTCCAAGACGGGGCTCCCTaGCCTGAGTGGAGGCCTTCT +
Preference number: 4 (lower is better)
Translates to: ESPPWFLGTLCFPPGSEVQDGAP*PEWRPS
Trigger: AGAAGGCCTCCACTCAGGCCAGGGAGCCCCGTCTTG...GACCTCAGAACCGGGAGGAAAGCACAGAGTCCCCAGGAACCAAGGGGGACTCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp GGTAGCATCACACGTGAGGTGGGATCCTGGGGCAACCACTCTGCTTCTGGATACTCGGGCGCCTCTCTCTaGGCAGGGCCCTCAGCGTTC +
Preference number: 4 (lower is better)
Translates to: GSITREVGSWGNHSASGYSGASL*AGPSAF
Trigger: GAACGCTGAGGGCCCTGCCCAGAGAGAGGCGCCCGA...GTATCCAGAAGCAGAGTGGTTGCCCCAGGATCCCACCTCACGTGTGATGCTACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013886.9
CDS-3UTR TCA 90 bp TTCCTCCCGGTTCTGAGGTCCCGAGAGGTTATGGCTTCTCAGCAATTTCCCCCACCTGGTGCAGGGCGCTaGTGCCATCCGCGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: FLPVLRSREVMASQQFPPPGAGR*CHPRWW
Trigger: CCACCAACGCGGATGGCATCAGCGCCCTGCACCAGG...TGGGGGAAATTGCTGAGAAGCCATAACCTCTCGGGACCTCAGAACCGGGAGGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR TCA 90 bp CTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGCCTCCCATCCACACCTCGGCGAGTaGTCTCTGCCTTCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: LWCLSTLSNVSLLGSASHPHLGE*SLPSAA
Trigger: GGCTGCTGAAGGCAGAGATCACTCGCCGAGGTGTGG...ATGGGAGGCTGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR TCA 90 bp GAGAGTCCCCCTTGGTTCCTGGGGACTCTGTGCTTTCCTCCCGGTTCTGAGGTCAACGAGGTCTCTCTGTaGGTGCTGCCTGCGGACCTG +
Preference number: 4 (lower is better)
Translates to: ESPPWFLGTLCFPPGSEVNEVSL*VLPADL
Trigger: CAGGTCCGCAGGCAGCACTCACAGAGAGACCTCGTT...GACCTCAGAACCGGGAGGAAAGCACAGAGTCCCCAGGAACCAAGGGGGACTCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp CTTCTTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCCCCAGTCCGGGGGTaGCTGGCCTCTGGCATAGCA +
Preference number: 4 (lower is better)
Translates to: LLGPISGACPLSATSPYLAPVRG*LASGIA
Trigger: TGCTATGCCAGAGGCCAGGCACCCCCGGACTGGGGC...CAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp TGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCATCCATGCCCCCGCCATaGTCAGCCAGCAGACGGCAG +
Preference number: 4 (lower is better)
Translates to: WSHLWCLSTLSNVSLLGSSMPPP*SASRRQ
Trigger: CTGCCGTCTGCTGGCTGAGCATGGCGGGGGCATGGA...TGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp TCCTGGGGACTCTGTGCTTTCCTCCCGGTTCTGAGGTCCCGAGAGGTTATGGCTGGGTCAGCGAATCCATaGCCCCGCCATGCTCAGCCA +
Preference number: 4 (lower is better)
Translates to: SWGLCAFLPVLRSREVMAGSANP*PRHAQP
Trigger: TGGCTGAGCATGGCGGGGGCATGGATTCGCTGACCC...AGCCATAACCTCTCGGGACCTCAGAACCGGGAGGAAAGCACAGAGTCCCCAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp TATCCTGATCTCAGAGAGTCCCCCTTGGTTCCTGGGGACTCTGTGCTTTCCTCCAATAGGAGGCCCTCCTaGCCCACCAGGCCGGCGCTC +
Preference number: 4 (lower is better)
Translates to: YPDLRESPLVPGDSVLSSNRRPS*PTRPAL
Trigger: GAGCGCCGGCCTGGTGGGGCAGGAGGGCCTCCTATT...GGAGGAAAGCACAGAGTCCCCAGGAACCAAGGGGGACTCTCTGAGATCAGGATA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp TCCTGGGGACTCTGTGCTTTCCTCCCGGTTCTGAGGTCCCGAGAGGTTATGGCTGAGGAGGCTGAGCGCTaGAGACCGAGAACGCCCTCT +
Preference number: 4 (lower is better)
Translates to: SWGLCAFLPVLRSREVMAEEAER*RPRTPS
Trigger: AGAGGGCGTTCTCGGTCTGCAGCGCTCAGCCTCCTC...AGCCATAACCTCTCGGGACCTCAGAACCGGGAGGAAAGCACAGAGTCCCCAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp CTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGCCTCCCATGTCGGCCAGGGGCGCTaGAGAGGCTGTGAGGACATT +
Preference number: 4 (lower is better)
Translates to: LWCLSTLSNVSLLGSASHVGQGR*RGCEDI
Trigger: AATGTCCTCACAGCCTCTGCAGCGCCCCTGGCCGAC...ATGGGAGGCTGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp CTGATCTCAGAGAGTCCCCCTTGGTTCCTGGGGACTCTGTGCTTTCCTCCCGGTGTCGGCCAGGGGCGCTaGAGAGGCTGTGAGGACATT +
Preference number: 4 (lower is better)
Translates to: LISESPPWFLGTLCFPPGVGQGR*RGCEDI
Trigger: AATGTCCTCACAGCCTCTGCAGCGCCCCTGGCCGAC...ACCGGGAGGAAAGCACAGAGTCCCCAGGAACCAAGGGGGACTCTCTGAGATCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp CTGATCTCAGAGAGTCCCCCTTGGTTCCTGGGGACTCTGTGCTTTCCTCCCGGTGGGGTGCCTGGCCTCTaGCATAGCACCCCCATTCAG +
Preference number: 4 (lower is better)
Translates to: LISESPPWFLGTLCFPPGGVPGL*HSTPIQ
Trigger: CTGAATGGGGGTGCTATGCCAGAGGCCAGGCACCCC...ACCGGGAGGAAAGCACAGAGTCCCCAGGAACCAAGGGGGACTCTCTGAGATCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp TTCCTGGGGACTCTGTGCTTTCCTCCCGGTTCTGAGGTCCCGAGAGGTTATGGCGCTCCCTGGCCTGAGTaGAGGCCTTCTCAAGGAGGG +
Preference number: 4 (lower is better)
Translates to: FLGTLCFPPGSEVPRGYGAPWPE*RPSQGG
Trigger: CCCTCCTTGAGAAGGCCTCCACTCAGGCCAGGGAGC...GCCATAACCTCTCGGGACCTCAGAACCGGGAGGAAAGCACAGAGTCCCCAGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp TTCCTGGGGACTCTGTGCTTTCCTCCCGGTTCTGAGGTCCCGAGAGGTTATGGCGGCCCCCTCCGCTCATaGCCAGCTTTTCGATGCTCC +
Preference number: 4 (lower is better)
Translates to: FLGTLCFPPGSEVPRGYGGPLRS*PAFRCS
Trigger: GGAGCATCGAAAAGCTGGCCATGAGCGGAGGGGGCC...GCCATAACCTCTCGGGACCTCAGAACCGGGAGGAAAGCACAGAGTCCCCAGGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp AGCCCGCTTGGCTGCCTCGACATCCACACCTCGGCGAGTGATCTCTGCCTTCAGGCAATGTTGGCCCCATaGCTCAGGAGGTACCTGGTG +
Preference number: 4 (lower is better)
Translates to: SPLGCLDIHTSASDLCLQAMLAP*LRRYLV
Trigger: CACCAGGTACCTCCTGAGCCATGGGGCCAACATTGC...CTGAAGGCAGAGATCACTCGCCGAGGTGTGGATGTCGAGGCAGCCAAGCGGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125220.3
CDS-3UTR TCA 90 bp AGGTTATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGTTCACGCGCCTGGTGCAGGGCGCTaGTGCCATCCGCGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: RLWLLSNFPQSPVTHVHAPGAGR*CHPRWW
Trigger: CCACCAACGCGGATGGCATCAGCGCCCTGCACCAGG...CGCGTGAACATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATAACCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR TCA 90 bp TTCCTGGGGACTCTGTGCTTTCCTCCCGGTTCTGAGGTCCCGAGAGGTTATGGCGGTCCCCGTCACTGTTaGCAGCAGCAATGTTGGCCC +
Preference number: 4 (lower is better)
Translates to: FLGTLCFPPGSEVPRGYGGPRHC*QQQCWP
Trigger: GGGCCAACATTGCTGCTGTCAACAGTGACGGGGACC...GCCATAACCTCTCGGGACCTCAGAACCGGGAGGAAAGCACAGAGTCCCCAGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp GGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGCCTCCCATCTCTCCAGGTTCTCATCTATaGAGGCCTGGTGCAGGGCGC +
Preference number: 4 (lower is better)
Translates to: GACPLSATSPYLAQPPISPGSHL*RPGAGR
Trigger: GCGCCCTGCACCAGGCCTGCATAGATGAGAACCTGG...AGAGATGGGAGGCTGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp AGGTTATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGTTCACGCGGCCCCAGTCCGGGGGTaGCTGGCCTCTGGCATAGCA +
Preference number: 4 (lower is better)
Translates to: RLWLLSNFPQSPVTHVHAAPVRG*LASGIA
Trigger: TGCTATGCCAGAGGCCAGGCACCCCCGGACTGGGGC...CGCGTGAACATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATAACCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp TTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCACCCCAGTGGGCTGCTaGATGCAAGGGTGTCCAGCC +
Preference number: 4 (lower is better)
Translates to: LVPSLVPVHSQQRLPTWLTPVGC*MQGCPA
Trigger: GGCTGGACACCCTTGCATGCAGCAGCCCACTGGGGT...GAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp GTCCTTGCTTCCTTCTTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTTCCATGCCCCCGCCATaGTCAGCCAGCAGACGGCAG +
Preference number: 4 (lower is better)
Translates to: VLASFLVPSLVPVHSQQRSMPPP*SASRRQ
Trigger: CTGCCGTCTGCTGGCTGAGCATGGCGGGGGCATGGA...ACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp TTCCTGGGGACTCTGTGCTTTCCTCCCGGTTCTGAGGTCCCGAGAGGTTATGGCCACCATCCACAGTGCTaGACTCTGGGCTCCGTTCCG +
Preference number: 4 (lower is better)
Translates to: FLGTLCFPPGSEVPRGYGHHPQC*TLGSVP
Trigger: CGGAACGGAGCCCAGAGTGCAGCACTGTGGATGGTG...GCCATAACCTCTCGGGACCTCAGAACCGGGAGGAAAGCACAGAGTCCCCAGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp TATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGTTCACGCGGGGGCAAGACGGGGCTCCCTaGCCTGAGTGGAGGCCTTCT +
Preference number: 4 (lower is better)
Translates to: YGFSAISPRALSLMFTRGQDGAP*PEWRPS
Trigger: AGAAGGCCTCCACTCAGGCCAGGGAGCCCCGTCTTG...CCCCCGCGTGAACATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp CTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGCCTCCCATCAGGGTGAAGGGCTCTaGCACTTTCTGGGCAGGGGT +
Preference number: 4 (lower is better)
Translates to: LWCLSTLSNVSLLGSASHQGEGL*HFLGRG
Trigger: ACCCCTGCCCAGAAAGTGCCAGAGCCCTTCACCCTG...ATGGGAGGCTGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp TTCCTGGGGACTCTGTGCTTTCCTCCCGGTTCTGAGGTCCCGAGAGGTTATGGCCAGGGTGAAGGGCTCTaGCACTTTCTGGGCAGGGGT +
Preference number: 4 (lower is better)
Translates to: FLGTLCFPPGSEVPRGYGQGEGL*HFLGRG
Trigger: ACCCCTGCCCAGAAAGTGCCAGAGCCCTTCACCCTG...GCCATAACCTCTCGGGACCTCAGAACCGGGAGGAAAGCACAGAGTCCCCAGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp GATCTCAGAGAGTCCCCCTTGGTTCCTGGGGACTCTGTGCTTTCCTCCCGGTTCAGGCTGCTCTGGCTCTaGGACCTTCCCAGCCACCTT +
Preference number: 4 (lower is better)
Translates to: DLRESPLVPGDSVLSSRFRLLWL*DLPSHL
Trigger: AAGGTGGCTGGGAAGGTCCCAGAGCCAGAGCAGCCT...GAACCGGGAGGAAAGCACAGAGTCCCCAGGAACCAAGGGGGACTCTCTGAGATC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp TGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGGCCCCCTCCGCTCATaGCCAGCTTTTCGATGCTCC +
Preference number: 4 (lower is better)
Translates to: WSHLWCLSTLSNVSLLGSGPLRS*PAFRCS
Trigger: GGAGCATCGAAAAGCTGGCCATGAGCGGAGGGGGCC...TGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp TCCTGGGGACTCTGTGCTTTCCTCCCGGTTCTGAGGTCCCGAGAGGTTATGGCTTCGGCGAGTGATCTCTaGCTTCAGCAGCCCCTCCAT +
Preference number: 4 (lower is better)
Translates to: SWGLCAFLPVLRSREVMASASDL*LQQPLH
Trigger: ATGGAGGGGCTGCTGAAGGCAGAGATCACTCGCCGA...AGCCATAACCTCTCGGGACCTCAGAACCGGGAGGAAAGCACAGAGTCCCCAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp TTCCTGGGGACTCTGTGCTTTCCTCCCGGTTCTGAGGTCCCGAGAGGTTATGGCTCGGCGAGTGATCTCTaGCTTCAGCAGCCCCTCCAT +
Preference number: 4 (lower is better)
Translates to: FLGTLCFPPGSEVPRGYGSASDL*LQQPLH
Trigger: ATGGAGGGGCTGCTGAAGGCAGAGATCACTCGCCGA...GCCATAACCTCTCGGGACCTCAGAACCGGGAGGAAAGCACAGAGTCCCCAGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp CCTTGCTTCCTTCTTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTGGGTCAGCGAATCCATaGCCCCGCCATGCTCAGCCA +
Preference number: 4 (lower is better)
Translates to: PCFLLGPISGACPLSATSGSANP*PRHAQP
Trigger: TGGCTGAGCATGGCGGGGGCATGGATTCGCTGACCC...AGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp CCTTGCTTCCTTCTTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTGAGGAGGCTGAGCGCTaGAGACCGAGAACGCCCTCT +
Preference number: 4 (lower is better)
Translates to: PCFLLGPISGACPLSATSEEAER*RPRTPS
Trigger: AGAGGGCGTTCTCGGTCTGCAGCGCTCAGCCTCCTC...AGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp TGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCACACCATCCACAGTGCTaGACTCTGGGCTCCGTTCCG +
Preference number: 4 (lower is better)
Translates to: WSHLWCLSTLSNVSLLGSHHPQC*TLGSVP
Trigger: CGGAACGGAGCCCAGAGTGCAGCACTGTGGATGGTG...TGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp TATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGTTCACGCGGGGGCTCCACCTTGAGCTGTaGCAGACGCAGGGTGGTCTC +
Preference number: 4 (lower is better)
Translates to: YGFSAISPRALSLMFTRGLHLEL*QTQGGL
Trigger: GAGACCACCCTGCGTCTGGCACAGCTCAAGGTGGAG...CCCCCGCGTGAACATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp TGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCACTCCTCTTCCAGCTCTaGTGCCTTGCGCTCCAGAGC +
Preference number: 4 (lower is better)
Translates to: WSHLWCLSTLSNVSLLGSLLFQL*CLALQS
Trigger: GCTCTGGAGCGCAAGGCAGCAGAGCTGGAAGAGGAG...TGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp GGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGCCTCCCATCTCTCCCTCGTTGTCTGCCTaGTTCACAGTAGCACCCTGC +
Preference number: 4 (lower is better)
Translates to: GACPLSATSPYLAQPPISPSLSA*FTVAPC
Trigger: GCAGGGTGCTACTGTGAACCAGGCAGACAACGAGGG...AGAGATGGGAGGCTGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp GGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGCCTCCCATCTCTGCAATGTTGGCCCCATaGCTCAGGAGGTACCTGGCA +
Preference number: 4 (lower is better)
Translates to: GACPLSATSPYLAQPPISAMLAP*LRRYLA
Trigger: TGCCAGGTACCTCCTGAGCCATGGGGCCAACATTGC...AGAGATGGGAGGCTGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp GTCCTTGCTTCCTTCTTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTGGGGTGCCTGGCCTCTaGCATAGCACCCCCATTCAG +
Preference number: 4 (lower is better)
Translates to: VLASFLVPSLVPVHSQQRGVPGL*HSTPIQ
Trigger: CTGAATGGGGGTGCTATGCCAGAGGCCAGGCACCCC...ACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGGAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp GGTCCCGAGAGGTTATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGTGCCAGACGCAGGGTaGTCTCTGTCAGGGCCTCAC +
Preference number: 4 (lower is better)
Translates to: GPERLWLLSNFPQSPVTHVPDAG*SLSGPH
Trigger: GTGAGGCCCTGACAGAGACCACCCTGCGTCTGGCAC...ATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATAACCTCTCGGGACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR TCA 90 bp TATCCTGATCTCAGAGAGTCCCCCTTGGTTCCTGGGGACTCTGTGCTTTCCTCCCCCCTCCATGGCATCTaGCTCAGCCAGGTCCAAAGG +
Preference number: 4 (lower is better)
Translates to: YPDLRESPLVPGDSVLSSPLHGI*LSQVQR
Trigger: CCTTTGGACCTGGCTGAGTCAGATGCCATGGAGGGG...GGAGGAAAGCACAGAGTCCCCAGGAACCAAGGGGGACTCTCTGAGATCAGGATA
58% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR TCA 90 bp TTCCTGGGGACTCTGTGCTTTCCTCCCGGTTCTGAGGTCCCGAGAGGTTATGGCTGTAGCCCTCCTTTCTaGAGGACCCAAGGCACCAGT +
Preference number: 4 (lower is better)
Translates to: FLGTLCFPPGSEVPRGYGCSPPF*RTQGTS
Trigger: ACTGGTGCCTTGGGTCCTTCAGAAAGGAGGGCTACA...GCCATAACCTCTCGGGACCTCAGAACCGGGAGGAAAGCACAGAGTCCCCAGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR TCA 90 bp CTGATCTCAGAGAGTCCCCCTTGGTTCCTGGGGACTCTGTGCTTTCCTCCCGGTGAGGGTGGAACAGAGTaGTCCAAAGAAGGAGGCGTG +
Preference number: 4 (lower is better)
Translates to: LISESPPWFLGTLCFPPGEGGTE*SKEGGV
Trigger: CACGCCTCCTTCTTTGGATCACTCTGTTCCACCCTC...ACCGGGAGGAAAGCACAGAGTCCCCAGGAACCAAGGGGGACTCTCTGAGATCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR TCA 90 bp GGTCCCGAGAGGTTATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATAACGAGGTCTCTCTGTaGGTGCTGCCTGCGGACCTG +
Preference number: 4 (lower is better)
Translates to: GPERLWLLSNFPQSPVTHNEVSL*VLPADL
Trigger: CAGGTCCGCAGGCAGCACTCACAGAGAGACCTCGTT...ATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATAACCTCTCGGGACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR TCA 90 bp GGTAGCATCACACGTGAGGTGGGATCCTGGGGCAACCACTCTGCTTCTGGATACCTGCATTCTCATCCTTaGGCCGCTGGTTGTCAGCCC +
Preference number: 4 (lower is better)
Translates to: GSITREVGSWGNHSASGYLHSHP*AAGCQP
Trigger: GGGCTGACAACCAGCGGCTCAAGGATGAGAATGCAG...GTATCCAGAAGCAGAGTGGTTGCCCCAGGATCCCACCTCACGTGTGATGCTACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR TCA 90 bp TATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGTTCACGCGGGGGCTGCATTCTCATCCTTaGGCCGCTGGTTGTCAGCCC +
Preference number: 4 (lower is better)
Translates to: YGFSAISPRALSLMFTRGLHSHP*AAGCQP
Trigger: GGGCTGACAACCAGCGGCTCAAGGATGAGAATGCAG...CCCCCGCGTGAACATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp TTCCTCCCGGTTCTGAGGTCCCGAGAGGTTATGGCTTCTCAGCAATTTCCCCCACCAGGTTCTCATCTATaGAGGCCTGGTGCAGGGCGC +
Preference number: 4 (lower is better)
Translates to: FLPVLRSREVMASQQFPPPGSHL*RPGAGR
Trigger: GCGCCCTGCACCAGGCCTGCATAGATGAGAACCTGG...TGGGGGAAATTGCTGAGAAGCCATAACCTCTCGGGACCTCAGAACCGGGAGGAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp CCTTGCTTCCTTCTTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTTTCAGCCCGCTTGGCTaGCTCGACATCCACACCTCG +
Preference number: 4 (lower is better)
Translates to: PCFLLGPISGACPLSATSFSPLG*LDIHTS
Trigger: CGAGGTGTGGATGTCGAGGCAGCCAAGCGGGCTGAA...AGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp TATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGTTCACGCGGGGGGGTTCCACAGCTGGGTaGTCAGCTGACGCTTCACCT +
Preference number: 4 (lower is better)
Translates to: YGFSAISPRALSLMFTRGGSTAG*SADASP
Trigger: AGGTGAAGCGTCAGCTGAGCACCCAGCTGTGGAACC...CCCCCGCGTGAACATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATA
58% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp CTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGCCTCCCATCTATCCACCATCCACAGTaGTGCACTCTGGGCTCCGTT +
Preference number: 4 (lower is better)
Translates to: LVPVHSQQRLPTWLSLPSIHHPQ*CTLGSV
Trigger: AACGGAGCCCAGAGTGCAGCACTGTGGATGGTGGAT...AGATGGGAGGCTGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp CCTTGCTTCCTTCTTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCTCCACCTTGAGCTGTaGCAGACGCAGGGTGGTCTC +
Preference number: 4 (lower is better)
Translates to: PCFLLGPISGACPLSATSLHLEL*QTQGGL
Trigger: GAGACCACCCTGCGTCTGGCACAGCTCAAGGTGGAG...AGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp CTGATCTCAGAGAGTCCCCCTTGGTTCCTGGGGACTCTGTGCTTTCCTCCCGGTTGCGCTCCAGAGCCCTaGGCTCAAATCTCTCCAGTT +
Preference number: 4 (lower is better)
Translates to: LISESPPWFLGTLCFPPGCAPEP*AQISPV
Trigger: AACTGGAGAGATTTGAGCGCAGGGCTCTGGAGCGCA...ACCGGGAGGAAAGCACAGAGTCCCCAGGAACCAAGGGGGACTCTCTGAGATCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp GTCCTTGCTTCCTTCTTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCTCTTCCAGCTCTaGTGCCTTGCGCTCCAGAGC +
Preference number: 4 (lower is better)
Translates to: VLASFLVPSLVPVHSQQRLLFQL*CLALQS
Trigger: GCTCTGGAGCGCAAGGCAGCAGAGCTGGAAGAGGAG...ACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp GGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGCCTCCCATCTCTACCATTGAGGGCTCTTaGTTCCACAGCTGGGTGCTC +
Preference number: 4 (lower is better)
Translates to: GACPLSATSPYLAQPPISTIEGS*FHSWVL
Trigger: GAGCACCCAGCTGTGGAACCAAGAGCCCTCAATGGT...AGAGATGGGAGGCTGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp GATCTCAGAGAGTCCCCCTTGGTTCCTGGGGACTCTGTGCTTTCCTCCCGGTTCGGCTCTGGCACTTTCTaGGCAGGGGTAGGGGTTATT +
Preference number: 4 (lower is better)
Translates to: DLRESPLVPGDSVLSSRFGSGTF*AGVGVI
Trigger: AATAACCCCTACCCCTGCCCAGAAAGTGCCAGAGCC...GAACCGGGAGGAAAGCACAGAGTCCCCAGGAACCAAGGGGGACTCTCTGAGATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp GGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGCCTCCCATCTCTATCCAGGCTCCCTCCTaGAGGGTGGAACAGAGTGAT +
Preference number: 4 (lower is better)
Translates to: GACPLSATSPYLAQPPISIQAPS*RVEQSD
Trigger: ATCACTCTGTTCCACCCTCCAGGAGGGAGCCTGGAT...AGAGATGGGAGGCTGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp GGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGCCTCCCATCTCTGAGTTACACCCTGTGTaGACCTCCGAGACTGTCGCA +
Preference number: 4 (lower is better)
Translates to: GACPLSATSPYLAQPPISELHPV*TSETVA
Trigger: TGCGACAGTCTCGGAGGTCCACACAGGGTGTAACTC...AGAGATGGGAGGCTGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp GTCCTTGCTTCCTTCTTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTAGGCTGCTCTGGCTCTaGGACCTTCCCAGCCACCTT +
Preference number: 4 (lower is better)
Translates to: VLASFLVPSLVPVHSQQRRLLWL*DLPSHL
Trigger: AAGGTGGCTGGGAAGGTCCCAGAGCCAGAGCAGCCT...ACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp GGTCCCGAGAGGTTATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATTGCTGCCTGCGGACCTaGGATCCACCATCCACAGTG +
Preference number: 4 (lower is better)
Translates to: GPERLWLLSNFPQSPVTHCCLRT*DPPSTV
Trigger: CACTGTGGATGGTGGATCCCAGGTCCGCAGGCAGCA...ATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATAACCTCTCGGGACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp CTGATCTCAGAGAGTCCCCCTTGGTTCCTGGGGACTCTGTGCTTTCCTCCCGGTTCATCCTTGAGCCGCTaGTTGTCAGCCCGGAGATCA +
Preference number: 4 (lower is better)
Translates to: LISESPPWFLGTLCFPPGSSLSR*LSARRS
Trigger: TGATCTCCGGGCTGACAACCAGCGGCTCAAGGATGA...ACCGGGAGGAAAGCACAGAGTCCCCAGGAACCAAGGGGGACTCTCTGAGATCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR TCA 90 bp AGAGGTTATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGTTCACGCCACACCTCGGCGAGTaGTCTCTGCCTTCAGCAGCC +
Preference number: 4 (lower is better)
Translates to: RGYGFSAISPRALSLMFTPHLGE*SLPSAA
Trigger: GGCTGCTGAAGGCAGAGATCACTCGCCGAGGTGTGG...CGTGAACATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATAACCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR TCA 90 bp CTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGCCTCCCATCTAGGTCCTCCTGTTTCTaGGCCAGTTCCTCCAAAAGG +
Preference number: 4 (lower is better)
Translates to: LVPVHSQQRLPTWLSLPSRSSCF*ASSSKR
Trigger: CCTTTTGGAGGAACTGGCTCAGAAACAGGAGGACCT...AGATGGGAGGCTGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp AGAGGTTATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGTTCACGACCCCAGTGGGCTGCTaGATGCAAGGGTGTCCAGCC +
Preference number: 4 (lower is better)
Translates to: RGYGFSAISPRALSLMFTTPVGC*MQGCPA
Trigger: GGCTGGACACCCTTGCATGCAGCAGCCCACTGGGGT...CGTGAACATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATAACCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp GGTAGCATCACACGTGAGGTGGGATCCTGGGGCAACCACTCTGCTTCTGGATACATCCACCATCCACAGTaGTGCACTCTGGGCTCCGTT +
Preference number: 4 (lower is better)
Translates to: GSITREVGSWGNHSASGYIHHPQ*CTLGSV
Trigger: AACGGAGCCCAGAGTGCAGCACTGTGGATGGTGGAT...GTATCCAGAAGCAGAGTGGTTGCCCCAGGATCCCACCTCACGTGTGATGCTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp TGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGTCGCTCATTCTCCCTaGGGAGCTCCGTGTACATCT +
Preference number: 4 (lower is better)
Translates to: WSHLWCLSTLSNVSLLGSVAHSP*GAPCTS
Trigger: AGATGTACACGGAGCTCCGCAGGGAGAATGAGCGAC...TGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp CTTCTTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCAATGTTGGCCCCATaGCTCAGGAGGTACCTGGCA +
Preference number: 4 (lower is better)
Translates to: LLGPISGACPLSATSPYLAMLAP*LRRYLA
Trigger: TGCCAGGTACCTCCTGAGCCATGGGGCCAACATTGC...CAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp TTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCGTGCTCCCTGTCTTCTaGAGACCAAAGCGCCTGGAA +
Preference number: 4 (lower is better)
Translates to: LVPSLVPVHSQQRLPTWLVLPVF*RPKRLE
Trigger: TTCCAGGCGCTTTGGTCTCCAGAAGACAGGGAGCAC...GAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp TGGGATCCTGGGGCAACCACTCTGCTTCTGGATACTGATCTTTGTGTCTCTTGGGCTCCCTGGCCTGAGTaGAGGCCTTCTCAAGGAGGG +
Preference number: 4 (lower is better)
Translates to: WDPGATTLLLDTDLCVSWAPWPE*RPSQGG
Trigger: CCCTCCTTGAGAAGGCCTCCACTCAGGCCAGGGAGC...CCAAGAGACACAAAGATCAGTATCCAGAAGCAGAGTGGTTGCCCCAGGATCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp TATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGTTCACGCGGGGGATCCAGGCTCCCTCCTaGAGGGTGGAACAGAGTGAT +
Preference number: 4 (lower is better)
Translates to: YGFSAISPRALSLMFTRGIQAPS*RVEQSD
Trigger: ATCACTCTGTTCCACCCTCCAGGAGGGAGCCTGGAT...CCCCCGCGTGAACATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp TGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGAGTTACACCCTGTGTaGACCTCCGAGACTGTCGCA +
Preference number: 4 (lower is better)
Translates to: WSHLWCLSTLSNVSLLGSELHPV*TSETVA
Trigger: TGCGACAGTCTCGGAGGTCCACACAGGGTGTAACTC...TGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp AGGTTATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGTTCACGCGTGCTGCCTGCGGACCTaGGATCCACCATCCACAGTG +
Preference number: 4 (lower is better)
Translates to: RLWLLSNFPQSPVTHVHACCLRT*DPPSTV
Trigger: CACTGTGGATGGTGGATCCCAGGTCCGCAGGCAGCA...CGCGTGAACATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATAACCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp TTCCTGGGGACTCTGTGCTTTCCTCCCGGTTCTGAGGTCCCGAGAGGTTATGGCCCTCGTGCTCCTGCTTaGATTCTAGAACGAGGTCTC +
Preference number: 4 (lower is better)
Translates to: FLGTLCFPPGSEVPRGYGPRAPA*ILERGL
Trigger: GAGACCTCGTTCTAGAATCCAAGCAGGAGCACGAGG...GCCATAACCTCTCGGGACCTCAGAACCGGGAGGAAAGCACAGAGTCCCCAGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp TGGGATCCTGGGGCAACCACTCTGCTTCTGGATACTGATCTTTGTGTCTCTTGGGTGCCAGACGCAGGGTaGTCTCTGTCAGGGCCTCAC +
Preference number: 4 (lower is better)
Translates to: WDPGATTLLLDTDLCVSWVPDAG*SLSGPH
Trigger: GTGAGGCCCTGACAGAGACCACCCTGCGTCTGGCAC...CCAAGAGACACAAAGATCAGTATCCAGAAGCAGAGTGGTTGCCCCAGGATCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR TCA 90 bp GGTCCCGAGAGGTTATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGAGGGTGGAACAGAGTaGTCCAAAGAAGGAGGCGTG +
Preference number: 4 (lower is better)
Translates to: GPERLWLLSNFPQSPVTHEGGTE*SKEGGV
Trigger: CACGCCTCCTTCTTTGGATCACTCTGTTCCACCCTC...ATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATAACCTCTCGGGACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp AGAGGTTATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGTTCACGTTCAGCCCGCTTGGCTaGCTCGACATCCACACCTCG +
Preference number: 4 (lower is better)
Translates to: RGYGFSAISPRALSLMFTFSPLG*LDIHTS
Trigger: CGAGGTGTGGATGTCGAGGCAGCCAAGCGGGCTGAA...CGTGAACATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATAACCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp CTTCTTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGACCATTGAGGGCTCTTaGTTCCACAGCTGGGTGCTC +
Preference number: 4 (lower is better)
Translates to: LLGPISGACPLSATSPYLTIEGS*FHSWVL
Trigger: GAGCACCCAGCTGTGGAACCAAGAGCCCTCAATGGT...CAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp TATCCTGATCTCAGAGAGTCCCCCTTGGTTCCTGGGGACTCTGTGCTTTCCTCCGGAGACCAAAGCGCCTaGAAAAGGGAGCCTCTTCTG +
Preference number: 4 (lower is better)
Translates to: YPDLRESPLVPGDSVLSSGDQSA*KREPLL
Trigger: CAGAAGAGGCTCCCTTTTCCAGGCGCTTTGGTCTCC...GGAGGAAAGCACAGAGTCCCCAGGAACCAAGGGGGACTCTCTGAGATCAGGATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp TTCCTCCCGGTTCTGAGGTCCCGAGAGGTTATGGCTTCTCAGCAATTTCCCCCAGGAGACCAAAGCGCCTaGAAAAGGGAGCCTCTTCTG +
Preference number: 4 (lower is better)
Translates to: FLPVLRSREVMASQQFPPGDQSA*KREPLL
Trigger: CAGAAGAGGCTCCCTTTTCCAGGCGCTTTGGTCTCC...TGGGGGAAATTGCTGAGAAGCCATAACCTCTCGGGACCTCAGAACCGGGAGGAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp CTTCTTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGTGCTCCCTGTCTTCTaGAGACCAAAGCGCCTGGAA +
Preference number: 4 (lower is better)
Translates to: LLGPISGACPLSATSPYLVLPVF*RPKRLE
Trigger: TTCCAGGCGCTTTGGTCTCCAGAAGACAGGGAGCAC...CAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp CTTCTTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGGCTCTGGCACTTTCTaGGCAGGGGTAGGGGTTATT +
Preference number: 4 (lower is better)
Translates to: LLGPISGACPLSATSPYLGSGTF*AGVGVI
Trigger: AATAACCCCTACCCCTGCCCAGAAAGTGCCAGAGCC...CAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
3UTR CAA 72 bp TCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTaGGCTCAGCCTCCCATCTCTATCCTGATCTCAGAG +
Preference number: 4 (lower is better)
Translates to: SGACPLSATSPY*AQPPISILISE
Trigger: CTCTGAGATCAGGATAGAGATGGGAGGCTGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR TCA 90 bp AGGTTATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGTTCACGCGTGTAGCCCTCCTTTCTaGAGGACCCAAGGCACCAGT +
Preference number: 4 (lower is better)
Translates to: RLWLLSNFPQSPVTHVHACSPPF*RTQGTS
Trigger: ACTGGTGCCTTGGGTCCTTCAGAAAGGAGGGCTACA...CGCGTGAACATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATAACCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp TATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGTTCACGCGGGGGACGGAGCTCCTTCTGTaGTTACTACTTGAAGGGACC +
Preference number: 4 (lower is better)
Translates to: YGFSAISPRALSLMFTRGTELLL*LLLEGT
Trigger: GGTCCCTTCAAGTAGTAAGCACAGAAGGAGCTCCGT...CCCCCGCGTGAACATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp GGTAGCATCACACGTGAGGTGGGATCCTGGGGCAACCACTCTGCTTCTGGATACACGGAGCTCCTTCTGTaGTTACTACTTGAAGGGACC +
Preference number: 4 (lower is better)
Translates to: GSITREVGSWGNHSASGYTELLL*LLLEGT
Trigger: GGTCCCTTCAAGTAGTAAGCACAGAAGGAGCTCCGT...GTATCCAGAAGCAGAGTGGTTGCCCCAGGATCCCACCTCACGTGTGATGCTACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp TGGGATCCTGGGGCAACCACTCTGCTTCTGGATACTGATCTTTGTGTCTCTTGGGGTTCCACAGCTGGGTaGTCAGCTGACGCTTCACCT +
Preference number: 4 (lower is better)
Translates to: WDPGATTLLLDTDLCVSWGSTAG*SADASP
Trigger: AGGTGAAGCGTCAGCTGAGCACCCAGCTGTGGAACC...CCAAGAGACACAAAGATCAGTATCCAGAAGCAGAGTGGTTGCCCCAGGATCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp CTTTGTGTCTCTTGGTCCTTGCTTCCTTCTTGGTCCCATCTCTGGTGCCTGTCCGTCGCTCATTCTCCCTaGGGAGCTCCGTGTACATCT +
Preference number: 4 (lower is better)
Translates to: LCVSWSLLPSWSHLWCLSVAHSP*GAPCTS
Trigger: AGATGTACACGGAGCTCCGCAGGGAGAATGAGCGAC...GGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGGACCAAGAGACACAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp TTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCGACTCGGATCAATGCTaGATTCTCATCCTTGAGCCG +
Preference number: 4 (lower is better)
Translates to: LVPSLVPVHSQQRLPTWLDSDQC*ILILEP
Trigger: CGGCTCAAGGATGAGAATGCAGCATTGATCCGAGTC...GAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp AGAGGTTATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGTTCACGCCCTCGTTGTCTGCCTaGTTCACAGTAGCACCCTGC +
Preference number: 4 (lower is better)
Translates to: RGYGFSAISPRALSLMFTPSLSA*FTVAPC
Trigger: GCAGGGTGCTACTGTGAACCAGGCAGACAACGAGGG...CGTGAACATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATAACCTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp TGGGATCCTGGGGCAACCACTCTGCTTCTGGATACTGATCTTTGTGTCTCTTGGTCAGCAGCCCCTCCATaGCATCTGACTCAGCCAGGT +
Preference number: 4 (lower is better)
Translates to: WDPGATTLLLDTDLCVSWSAAPP*HLTQPG
Trigger: ACCTGGCTGAGTCAGATGCCATGGAGGGGCTGCTGA...CCAAGAGACACAAAGATCAGTATCCAGAAGCAGAGTGGTTGCCCCAGGATCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp GGTCCCGAGAGGTTATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATCTCCCTCCTGGAGGGTaGAACAGAGTGATCCAAAGA +
Preference number: 4 (lower is better)
Translates to: GPERLWLLSNFPQSPVTHLPPGG*NRVIQR
Trigger: TCTTTGGATCACTCTGTTCCACCCTCCAGGAGGGAG...ATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATAACCTCTCGGGACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp TTCCTCCCGGTTCTGAGGTCCCGAGAGGTTATGGCTTCTCAGCAATTTCCCCCACTCCCTCCTGGAGGGTaGAACAGAGTGATCCAAAGA +
Preference number: 4 (lower is better)
Translates to: FLPVLRSREVMASQQFPPLPPGG*NRVIQR
Trigger: TCTTTGGATCACTCTGTTCCACCCTCCAGGAGGGAG...TGGGGGAAATTGCTGAGAAGCCATAACCTCTCGGGACCTCAGAACCGGGAGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp CCTTGCTTCCTTCTTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCTCGTGCTCCTGCTTaGATTCTAGAACGAGGTCTC +
Preference number: 4 (lower is better)
Translates to: PCFLLGPISGACPLSATSPRAPA*ILERGL
Trigger: GAGACCTCGTTCTAGAATCCAAGCAGGAGCACGAGG...AGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp AGAGGTTATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGTTCACGTGCGCTCCAGAGCCCTaGGCTCAAATCTCTCCAGTT +
Preference number: 4 (lower is better)
Translates to: RGYGFSAISPRALSLMFTCAPEP*AQISPV
Trigger: AACTGGAGAGATTTGAGCGCAGGGCTCTGGAGCGCA...CGTGAACATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATAACCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp GATCTCAGAGAGTCCCCCTTGGTTCCTGGGGACTCTGTGCTTTCCTCCCGGTTCGATGACTCGGATCAATaGTGCATTCTCATCCTTGAG +
Preference number: 4 (lower is better)
Translates to: DLRESPLVPGDSVLSSRFDDSDQ*CILILE
Trigger: CTCAAGGATGAGAATGCAGCATTGATCCGAGTCATC...GAACCGGGAGGAAAGCACAGAGTCCCCAGGAACCAAGGGGGACTCTCTGAGATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp GGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGCCTCCCATCTCTGATGACTCGGATCAATaGTGCATTCTCATCCTTGAG +
Preference number: 4 (lower is better)
Translates to: GACPLSATSPYLAQPPISDDSDQ*CILILE
Trigger: CTCAAGGATGAGAATGCAGCATTGATCCGAGTCATC...AGAGATGGGAGGCTGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp CCTTGCTTCCTTCTTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTGGCTGTGAGGACATTTaGCTTCACTATCGATCCAGG +
Preference number: 4 (lower is better)
Translates to: PCFLLGPISGACPLSATSGCEDI*LHYRSR
Trigger: CCTGGATCGATAGTGAAGCCAAATGTCCTCACAGCC...AGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CCA 90 bp AGAGGTTATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGTTCACGTCATCCTTGAGCCGCTaGTTGTCAGCCCGGAGATCA +
Preference number: 4 (lower is better)
Translates to: RGYGFSAISPRALSLMFTSSLSR*LSARRS
Trigger: TGATCTCCGGGCTGACAACCAGCGGCTCAAGGATGA...CGTGAACATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATAACCTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR TCA 90 bp ACTCTGCTTCTGGATACTGATCTTTGTGTCTCTTGGTCCTTGCTTCCTTCTTGGGGTCCCCGTCACTGTTaGCAGCAGCAATGTTGGCCC +
Preference number: 4 (lower is better)
Translates to: TLLLDTDLCVSWSLLPSWGPRHC*QQQCWP
Trigger: GGGCCAACATTGCTGCTGTCAACAGTGACGGGGACC...CCAAGAAGGAAGCAAGGACCAAGAGACACAAAGATCAGTATCCAGAAGCAGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR TCA 90 bp ACTCTGCTTCTGGATACTGATCTTTGTGTCTCTTGGTCCTTGCTTCCTTCTTGGCCCCTCCATGGCATCTaGCTCAGCCAGGTCCAAAGG +
Preference number: 4 (lower is better)
Translates to: TLLLDTDLCVSWSLLPSWPLHGI*LSQVQR
Trigger: CCTTTGGACCTGGCTGAGTCAGATGCCATGGAGGGG...CCAAGAAGGAAGCAAGGACCAAGAGACACAAAGATCAGTATCCAGAAGCAGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR TCA 90 bp TTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCCAGCACCTTGTGTCATaGAGCAGCAATTCTTCTTCA +
Preference number: 4 (lower is better)
Translates to: LVPSLVPVHSQQRLPTWLQHLVS*SSNSSS
Trigger: TGAAGAAGAATTGCTGCTTCATGACACAAGGTGCTG...GAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR TCA 90 bp AGAGGTTATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGTTCACGAGGTCCTCCTGTTTCTaGGCCAGTTCCTCCAAAAGG +
Preference number: 4 (lower is better)
Translates to: RGYGFSAISPRALSLMFTRSSCF*ASSSKR
Trigger: CCTTTTGGAGGAACTGGCTCAGAAACAGGAGGACCT...CGTGAACATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATAACCTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp TGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCATCCTTTGATAGATCCTaGAAGGAGATCTTCTCTCGG +
Preference number: 4 (lower is better)
Translates to: WSHLWCLSTLSNVSLLGSSFDRS*KEIFSR
Trigger: CCGAGAGAAGATCTCCTTGCAGGATCTATCAAAGGA...TGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp CTTTGTGTCTCTTGGTCCTTGCTTCCTTCTTGGTCCCATCTCTGGTGCCTGTCCGACTCGGATCAATGCTaGATTCTCATCCTTGAGCCG +
Preference number: 4 (lower is better)
Translates to: LCVSWSLLPSWSHLWCLSDSDQC*ILILEP
Trigger: CGGCTCAAGGATGAGAATGCAGCATTGATCCGAGTC...GGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGGACCAAGAGACACAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR TCA 90 bp CTTCTTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGCAGCACCTTGTGTCATaGAGCAGCAATTCTTCTTCA +
Preference number: 4 (lower is better)
Translates to: LLGPISGACPLSATSPYLQHLVS*SSNSSS
Trigger: TGAAGAAGAATTGCTGCTTCATGACACAAGGTGCTG...CAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR GCA 90 bp AGGTTATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGTTCACGCGTCCTTTGATAGATCCTaGAAGGAGATCTTCTCTCGG +
Preference number: 4 (lower is better)
Translates to: RLWLLSNFPQSPVTHVHASFDRS*KEIFSR
Trigger: CCGAGAGAAGATCTCCTTGCAGGATCTATCAAAGGA...CGCGTGAACATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATAACCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CCA 90 bp CCCCCTCCGCTCATGGCCAGCTTTTCGATGCTCCCTGGCCGCCTGTaGTCCCTGGCCCTGCCCTTCGGGCGCCTCTCTCTGGGCAGGGCC +
Preference number: 5 (lower is better)
Translates to: PPPLMASFSMLPGRL*SLALPFGRLSLGRA
Trigger: GGCCCTGCCCAGAGAGAGGCGCCCGAAGGGCAGGGCCAGGGACCACAGGCGGCCAGGGAGCATCGAAAAGCTGGCCATGAGCGGAGGGGG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000013886.9
CDS CCA 90 bp CCCCCTCCGCTCATGGCCAGCTTTTCGATGCTCCCTGGCCGCCTGTaGTCCCTGGCCCTGCCCTTCGGGCGCCTCTGCTCTCTGGGCAGG +
Preference number: 5 (lower is better)
Translates to: PPPLMASFSMLPGRL*SLALPFGRLCSLGR
Trigger: CCTGCCCAGAGAGCAGAGGCGCCCGAAGGGCAGGGCCAGGGACCACAGGCGGCCAGGGAGCATCGAAAAGCTGGCCATGAGCGGAGGGGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000124248.8
CDS CCA 90 bp CCTCTGCTGGCCCCCTCCGCTCATGGCCAGCTTTTCGATGCTCCCTaGCCGCCTGTGGTCCCTGGCCCTGCCCTTCGGGCGCCTCTGCTC +
Preference number: 5 (lower is better)
Translates to: PLLAPSAHGQLFDAP*PPVVPGPALRAPLL
Trigger: GAGCAGAGGCGCCCGAAGGGCAGGGCCAGGGACCACAGGCGGCCAGGGAGCATCGAAAAGCTGGCCATGAGCGGAGGGGGCCAGCAGAGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000124248.8
CDS CCA 90 bp CCTCTGCTGGCCCCCTCCGCTCATGGCCAGCTTTTCGATGCTCCCTaGCCGCCTGTGGTCCCTGGCCCTGCCCTTCGGGCGCCTCTCTCT +
Preference number: 5 (lower is better)
Translates to: PLLAPSAHGQLFDAP*PPVVPGPALRAPLS
Trigger: AGAGAGAGGCGCCCGAAGGGCAGGGCCAGGGACCACAGGCGGCCAGGGAGCATCGAAAAGCTGGCCATGAGCGGAGGGGGCCAGCAGAGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000013886.9
CDS GCA 90 bp GCGTTCCTGCCGCTGCGTGGCCCGCTCCAGCTCCACCTTGAGCTGTaGCAGACGCAGGGTGGTCTCTGTCAGGGCCTCACGAAGTCGCTC +
Preference number: 5 (lower is better)
Translates to: AFLPLRGPLQLHLEL*QTQGGLCQGLTKSL
Trigger: GAGCGACTTCGTGAGGCCCTGACAGAGACCACCCTGCGTCTGGCACAGCTCAAGGTGGAGCTGGAGCGGGCCACGCAGCGGCAGGAACGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS GCA 90 bp CTCTCTGTGAGTGCTGCCTGCGGACCTGGGATCCACCATCCACAGTaGTGCACTCTGGGCTCCGTTCCGCAGGCCCCGCCTCTTCCCCCT +
Preference number: 5 (lower is better)
Translates to: LSVSAACGPGIHHPQ*CTLGSVPQAPPLPP
Trigger: AGGGGGAAGAGGCGGGGCCTGCGGAACGGAGCCCAGAGTGCAGCACTGTGGATGGTGGATCCCAGGTCCGCAGGCAGCACTCACAGAGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS TCA 90 bp CAGCAAAGCGTTCCTGCCGCTGCGTGGCCCGCTCCAGCTCCACCTTaGGCTGTGCCAGACGCAGGGTGGTCTCTGTCAGGGCCTCACGAA +
Preference number: 5 (lower is better)
Translates to: QQSVPAAAWPAPAPP*AVPDAGWSLSGPHE
Trigger: TTCGTGAGGCCCTGACAGAGACCACCCTGCGTCTGGCACAGCTCAAGGTGGAGCTGGAGCGGGCCACGCAGCGGCAGGAACGCTTTGCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS GCA 90 bp GGGACCCGAGGTCTCCGAGAAGGGTCCAGGCTGGGTAGGGCAGGCTaGTCTGGCTCTGGGACCTTCCCAGCCACCTTTTCTGCTTCCTTC +
Preference number: 5 (lower is better)
Translates to: GTRGLREGSRLGRAG*SGSGTFPATFSASF
Trigger: GAAGGAAGCAGAAAAGGTGGCTGGGAAGGTCCCAGAGCCAGAGCAGCCTGCCCTACCCAGCCTGGACCCTTCTCGGAGACCTCGGGTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS GCA 90 bp GGAGGCCCTCCTGCCCCACCAGGCCGGCGCTCCTTTGATAGATCCTaGAAGGAGATCTTCTCTCGGCTGCTCAAACGGCACACGGAGCTC +
Preference number: 5 (lower is better)
Translates to: GGPPAPPGRRSFDRS*KEIFSRLLKRHTEL
Trigger: GAGCTCCGTGTGCCGTTTGAGCAGCCGAGAGAAGATCTCCTTGCAGGATCTATCAAAGGAGCGCCGGCCTGGTGGGGCAGGAGGGCCTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CAA 90 bp GAGAGTCCCCCTTGGTTCCTGGGGACTCTGTGCTTTCCTCCCGGTTCTGAGGTCCGCTCCAGCTCCACCTaGAGCTGTGCCAGACGCAGG +
Preference number: 5 (lower is better)
Translates to: ESPPWFLGTLCFPPGSEVRSSST*SCARRR
Trigger: CCTGCGTCTGGCACAGCTCAAGGTGGAGCTGGAGCG...GACCTCAGAACCGGGAGGAAAGCACAGAGTCCCCAGGAACCAAGGGGGACTCTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CCA 90 bp GTCCCTGGAGTCGGCCAGGGGCGCTGCAGAGGCTGTGAGGACATTTaGCTTCACTATCGATCCAGGCTCCCTCCTGGAGGGTGGAACAGA +
Preference number: 5 (lower is better)
Translates to: VPGVGQGRCRGCEDI*LHYRSRLPPGGWNR
Trigger: TCTGTTCCACCCTCCAGGAGGGAGCCTGGATCGATAGTGAAGCCAAATGTCCTCACAGCCTCTGCAGCGCCCCTGGCCGACTCCAGGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CAA 90 bp TCCTGGGGACTCTGTGCTTTCCTCCCGGTTCTGAGGTCCCGAGAGGTTATGGCTCGCTCCAGCTCCACCTaGAGCTGTGCCAGACGCAGG +
Preference number: 5 (lower is better)
Translates to: SWGLCAFLPVLRSREVMARSSST*SCARRR
Trigger: CCTGCGTCTGGCACAGCTCAAGGTGGAGCTGGAGCG...AGCCATAACCTCTCGGGACCTCAGAACCGGGAGGAAAGCACAGAGTCCCCAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS TCA 90 bp ACCTCGGCGAGTGATCTCTGCCTTCAGCAGCCCCTCCATGGCATCTaGCTCAGCCAGGTCCAAAGGCAGGTCCCCGTCACTGTTGACAGC +
Preference number: 5 (lower is better)
Translates to: TSASDLCLQQPLHGI*LSQVQRQVPVTVDS
Trigger: GCTGTCAACAGTGACGGGGACCTGCCTTTGGACCTGGCTGAGTCAGATGCCATGGAGGGGCTGCTGAAGGCAGAGATCACTCGCCGAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS GCA 90 bp GCAGGGTGGTCTCTGTCAGGGCCTCACGAAGTCGCTCATTCTCCCTaGGGAGCTCCGTGTACATCTTCCGGAAGCCTCCATCAGGCTCCT +
Preference number: 5 (lower is better)
Translates to: AGWSLSGPHEVAHSP*GAPCTSSGSLHQAP
Trigger: AGGAGCCTGATGGAGGCTTCCGGAAGATGTACACGGAGCTCCGCAGGGAGAATGAGCGACTTCGTGAGGCCCTGACAGAGACCACCCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS GCA 90 bp GTCAGCCCGGAGATCAGAGAGGGCCTTCAGCTCCTCTTCCAGCTCTaGTGCCTTGCGCTCCAGAGCCCTGCGCTCAAATCTCTCCAGTTC +
Preference number: 5 (lower is better)
Translates to: VSPEIREGLQLLFQL*CLALQSPALKSLQF
Trigger: GAACTGGAGAGATTTGAGCGCAGGGCTCTGGAGCGCAAGGCAGCAGAGCTGGAAGAGGAGCTGAAGGCCCTCTCTGATCTCCGGGCTGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS TCA 90 bp GGCTTCACTATCGATCCAGGCTCCCTCCTGGAGGGTGGAACAGAGTaGTCCAAAGAAGGAGGCGTGGCAGCCTCATACAGGGTGAAGGGC +
Preference number: 5 (lower is better)
Translates to: GFTIDPGSLLEGGTE*SKEGGVAASYRVKG
Trigger: GCCCTTCACCCTGTATGAGGCTGCCACGCCTCCTTCTTTGGATCACTCTGTTCCACCCTCCAGGAGGGAGCCTGGATCGATAGTGAAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS GCA 90 bp GAGATCTTCTCTCGGCTGCTCAAACGGCACACGGAGCTCCTTCTGTaGTTACTACTTGAAGGGACCTGTGACTCCTGGCCTCGGCCCTGG +
Preference number: 5 (lower is better)
Translates to: EIFSRLLKRHTELLL*LLLEGTCDSWPRPW
Trigger: CCAGGGCCGAGGCCAGGAGTCACAGGTCCCTTCAAGTAGTAAGCACAGAAGGAGCTCCGTGTGCCGTTTGAGCAGCCGAGAGAAGATCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CCA 90 bp ACGGAGCTCCTTCTGTGCTTACTACTTGAAGGGACCTGTGACTCCTaGCCTCGGCCCTGGGAGCCTTCCTTTTGGTTCCGAAGGTCCTCC +
Preference number: 5 (lower is better)
Translates to: TELLLCLLLEGTCDS*PRPWEPSFWFRRSS
Trigger: GGAGGACCTTCGGAACCAAAAGGAAGGCTCCCAGGGCCGAGGCCAGGAGTCACAGGTCCCTTCAAGTAGTAAGCACAGAAGGAGCTCCGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CCA 90 bp ATCCAAAGAAGGAGGCGTGGCAGCCTCATACAGGGTGAAGGGCTCTaGCACTTTCTGGGCAGGGGTAGGGGTTATTCTGGCAAGACGGGG +
Preference number: 5 (lower is better)
Translates to: IQRRRRGSLIQGEGL*HFLGRGRGYSGKTG
Trigger: CCCCGTCTTGCCAGAATAACCCCTACCCCTGCCCAGAAAGTGCCAGAGCCCTTCACCCTGTATGAGGCTGCCACGCCTCCTTCTTTGGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CCA 90 bp TTGGATTCTAGAACGAGGTCTCTCTGTGAGTGCTGCCTGCGGACCTaGGATCCACCATCCACAGTGCTGCACTCTGGGCTCCGTTCCGCA +
Preference number: 5 (lower is better)
Translates to: LDSRTRSLCECCLRT*DPPSTVLHSGLRSA
Trigger: TGCGGAACGGAGCCCAGAGTGCAGCACTGTGGATGGTGGATCCCAGGTCCGCAGGCAGCACTCACAGAGAGACCTCGTTCTAGAATCCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CAA 90 bp CAGCAATTCTTCTTCAGCCCGCTTGGCTGCCTCGACATCCACACCTCGGCGAGTTTGACAGCAGCAATGTaGGCCCCATGGCTCAGGAGG +
Preference number: 5 (lower is better)
Translates to: QQFFFSPLGCLDIHTSASLTAAM*APWLRR
Trigger: CCTCCTGAGCCATGGGGCCAACATTGCTGCTGTCAA...ACTCGCCGAGGTGTGGATGTCGAGGCAGCCAAGCGGGCTGAAGAAGAATTGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000125220.3
CDS-3UTR CAA 90 bp CTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGCCTCCCATCTCTGGGAGCCTTCCTTTaGGTTCCGAAGGTCCTCCTG +
Preference number: 5 (lower is better)
Translates to: LVPVHSQQRLPTWLSLPSLGAFL*VPKVLL
Trigger: CAGGAGGACCTTCGGAACCAAAAGGAAGGCTCCCAG...AGATGGGAGGCTGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CAA 90 bp GATCTCAGAGAGTCCCCCTTGGTTCCTGGGGACTCTGTGCTTTCCTCCCGGTTCCAGGCCGGCGCTCCTTaGATAGATCCTGCAAGGAGA +
Preference number: 5 (lower is better)
Translates to: DLRESPLVPGDSVLSSRFQAGAP*IDPARR
Trigger: TCTCCTTGCAGGATCTATCAAAGGAGCGCCGGCCTG...GAACCGGGAGGAAAGCACAGAGTCCCCAGGAACCAAGGGGGACTCTCTGAGATC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CAA 90 bp CTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGCCTCCCATACAGGGCTCTTAGGGTaGGAGGACACAGGGGAAGAC +
Preference number: 5 (lower is better)
Translates to: LWCLSTLSNVSLLGSASHTGLLG*EDTGED
Trigger: GTCTTCCCCTGTGTCCTCCAACCCTAAGAGCCCTGT...ATGGGAGGCTGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CAA 90 bp CTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGCCTCCCATCTGCTGCATTCTCATCCTaGAGCCGCTGGTTGTCAGCC +
Preference number: 5 (lower is better)
Translates to: LVPVHSQQRLPTWLSLPSAAFSS*SRWLSA
Trigger: GGCTGACAACCAGCGGCTCAAGGATGAGAATGCAGC...AGATGGGAGGCTGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS TCA 90 bp CTGGCCTCTGGCATAGCACCCCCATTCAGCCAGCACCTTGTGTCATaGAGCAGCAATTCTTCTTCAGCCCGCTTGGCTGCCTCGACATCC +
Preference number: 5 (lower is better)
Translates to: LASGIAPPFSQHLVS*SSNSSSARLAASTS
Trigger: GGATGTCGAGGCAGCCAAGCGGGCTGAAGAAGAATTGCTGCTTCATGACACAAGGTGCTGGCTGAATGGGGGTGCTATGCCAGAGGCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CAA 90 bp GGTAGCATCACACGTGAGGTGGGATCCTGGGGCAACCACTCTGCTTCTGGATACTTGACAGCAGCAATGTaGGCCCCATGGCTCAGGAGG +
Preference number: 5 (lower is better)
Translates to: GSITREVGSWGNHSASGYLTAAM*APWLRR
Trigger: CCTCCTGAGCCATGGGGCCAACATTGCTGCTGTCAA...GTATCCAGAAGCAGAGTGGTTGCCCCAGGATCCCACCTCACGTGTGATGCTACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CCA 90 bp TGTACATCTTCCGGAAGCCTCCATCAGGCTCCTCGTGCTCCTGCTTaGATTCTAGAACGAGGTCTCTCTGTGAGTGCTGCCTGCGGACCT +
Preference number: 5 (lower is better)
Translates to: CTSSGSLHQAPRAPA*ILERGLSVSAACGP
Trigger: AGGTCCGCAGGCAGCACTCACAGAGAGACCTCGTTCTAGAATCCAAGCAGGAGCACGAGGAGCCTGATGGAGGCTTCCGGAAGATGTACA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CAA 90 bp TATCCTGATCTCAGAGAGTCCCCCTTGGTTCCTGGGGACTCTGTGCTTTCCTCCTTGACAGCAGCAATGTaGGCCCCATGGCTCAGGAGG +
Preference number: 5 (lower is better)
Translates to: YPDLRESPLVPGDSVLSSLTAAM*APWLRR
Trigger: CCTCCTGAGCCATGGGGCCAACATTGCTGCTGTCAA...GGAGGAAAGCACAGAGTCCCCAGGAACCAAGGGGGACTCTCTGAGATCAGGATA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CAA 90 bp TTCCTCCCGGTTCTGAGGTCCCGAGAGGTTATGGCTTCTCAGCAATTTCCCCCACTGGGAGCCTTCCTTTaGGTTCCGAAGGTCCTCCTG +
Preference number: 5 (lower is better)
Translates to: FLPVLRSREVMASQQFPPLGAFL*VPKVLL
Trigger: CAGGAGGACCTTCGGAACCAAAAGGAAGGCTCCCAG...TGGGGGAAATTGCTGAGAAGCCATAACCTCTCGGGACCTCAGAACCGGGAGGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CAA 90 bp TATCCTGATCTCAGAGAGTCCCCCTTGGTTCCTGGGGACTCTGTGCTTTCCTCCCAGGCCGGCGCTCCTTaGATAGATCCTGCAAGGAGA +
Preference number: 5 (lower is better)
Translates to: YPDLRESPLVPGDSVLSSQAGAP*IDPARR
Trigger: TCTCCTTGCAGGATCTATCAAAGGAGCGCCGGCCTG...GGAGGAAAGCACAGAGTCCCCAGGAACCAAGGGGGACTCTCTGAGATCAGGATA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CAA 90 bp TGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGGGGAAGACACACCATaGAGGGCTCTTGGTTCCACA +
Preference number: 5 (lower is better)
Translates to: WSHLWCLSTLSNVSLLGSGEDTP*RALGST
Trigger: TGTGGAACCAAGAGCCCTCAATGGTGTGTCTTCCCC...TGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CAA 90 bp TATCCTGATCTCAGAGAGTCCCCCTTGGTTCCTGGGGACTCTGTGCTTTCCTCCACAGGGCTCTTAGGGTaGGAGGACACAGGGGAAGAC +
Preference number: 5 (lower is better)
Translates to: YPDLRESPLVPGDSVLSSTGLLG*EDTGED
Trigger: GTCTTCCCCTGTGTCCTCCAACCCTAAGAGCCCTGT...GGAGGAAAGCACAGAGTCCCCAGGAACCAAGGGGGACTCTCTGAGATCAGGATA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CCA 90 bp GAGGACATTTGGCTTCACTATCGATCCAGGCTCCCTCCTGGAGGGTaGAACAGAGTGATCCAAAGAAGGAGGCGTGGCAGCCTCATACAG +
Preference number: 5 (lower is better)
Translates to: EDIWLHYRSRLPPGG*NRVIQRRRRGSLIQ
Trigger: CTGTATGAGGCTGCCACGCCTCCTTCTTTGGATCACTCTGTTCCACCCTCCAGGAGGGAGCCTGGATCGATAGTGAAGCCAAATGTCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CAA 90 bp GGTAGCATCACACGTGAGGTGGGATCCTGGGGCAACCACTCTGCTTCTGGATACTCCTCGTGCTCCTGCTaGGATTCTAGAACGAGGTCT +
Preference number: 5 (lower is better)
Translates to: GSITREVGSWGNHSASGYSSCSC*DSRTRS
Trigger: AGACCTCGTTCTAGAATCCAAGCAGGAGCACGAGGA...GTATCCAGAAGCAGAGTGGTTGCCCCAGGATCCCACCTCACGTGTGATGCTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CAA 90 bp AGGTTATGGCTTCTCAGCAATTTCCCCCAGAGCCCTGTCACTCATGTTCACGCGGCTGCATTCTCATCCTaGAGCCGCTGGTTGTCAGCC +
Preference number: 5 (lower is better)
Translates to: RLWLLSNFPQSPVTHVHAAAFSS*SRWLSA
Trigger: GGCTGACAACCAGCGGCTCAAGGATGAGAATGCAGC...CGCGTGAACATGAGTGACAGGGCTCTGGGGGAAATTGCTGAGAAGCCATAACCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS GCA 90 bp GCCGGCGCTCCTTTGATAGATCCTGCAAGGAGATCTTCTCTCGGCTaGTCAAACGGCACACGGAGCTCCTTCTGTGCTTACTACTTGAAG +
Preference number: 5 (lower is better)
Translates to: AGAPLIDPARRSSLG*SNGTRSSFCAYYLK
Trigger: CTTCAAGTAGTAAGCACAGAAGGAGCTCCGTGTGCCGTTTGAGCAGCCGAGAGAAGATCTCCTTGCAGGATCTATCAAAGGAGCGCCGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CAA 90 bp CTCTGGTGCCTGTCCACTCTCAGCAACGTCTCCCTACTTGGCTCAGCCTCCCATCATTCAGCCAGCACCTaGTGTCATGAAGCAGCAATT +
Preference number: 5 (lower is better)
Translates to: LWCLSTLSNVSLLGSASHHSAST*CHEAAI
Trigger: AATTGCTGCTTCATGACACAAGGTGCTGGCTGAATG...ATGGGAGGCTGAGCCAAGTAGGGAGACGTTGCTGAGAGTGGACAGGCACCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CAA 90 bp CTTTGTGTCTCTTGGTCCTTGCTTCCTTCTTGGTCCCATCTCTGGTGCCTGTCCGGGGAAGACACACCATaGAGGGCTCTTGGTTCCACA +
Preference number: 5 (lower is better)
Translates to: LCVSWSLLPSWSHLWCLSGEDTP*RALGST
Trigger: TGTGGAACCAAGAGCCCTCAATGGTGTGTCTTCCCC...GGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGGACCAAGAGACACAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CAA 90 bp CCTTGCTTCCTTCTTGGTCCCATCTCTGGTGCCTGTCCACTCTCAGCAACGTCTTCCTCGTGCTCCTGCTaGGATTCTAGAACGAGGTCT +
Preference number: 5 (lower is better)
Translates to: PCFLLGPISGACPLSATSSSCSC*DSRTRS
Trigger: AGACCTCGTTCTAGAATCCAAGCAGGAGCACGAGGA...AGACGTTGCTGAGAGTGGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS-3UTR CAA 90 bp CTTTGTGTCTCTTGGTCCTTGCTTCCTTCTTGGTCCCATCTCTGGTGCCTGTCCCATTCAGCCAGCACCTaGTGTCATGAAGCAGCAATT +
Preference number: 5 (lower is better)
Translates to: LCVSWSLLPSWSHLWCLSHSAST*CHEAAI
Trigger: AATTGCTGCTTCATGACACAAGGTGCTGGCTGAATG...GGACAGGCACCAGAGATGGGACCAAGAAGGAAGCAAGGACCAAGAGACACAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CAA 72 bp ATGCAGGCCTGGTGCAGGGCGCTGATGCCATCCGCGTaGGTGGAGTCGAGCACGGCACGGGCAGGCGGAGGG +
Preference number: 6 (lower is better)
Translates to: MQAWCRALMPSA*VESSTARAGGG
Trigger: CCCTCCGCCTGCCCGTGCCGTGCTCGACTCCACCAACGCGGATGGCATCAGCGCCCTGCACCAGGCCTGCAT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CAA 72 bp GGAGGTACCTGGTGCAGGGCGCTGATGCCATCCGCGTaGGTGGAGTCGAGCACGGCACGGGCAGGCGGAGGG +
Preference number: 6 (lower is better)
Translates to: GGTWCRALMPSA*VESSTARAGGG
Trigger: CCCTCCGCCTGCCCGTGCCGTGCTCGACTCCACCAACGCGGATGGCATCAGCGCCCTGCACCAGGTACCTCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000125220.3
CDS CAA 90 bp TTCTCATCTATGCAGGCCTGGTGCAGGGCGCTGATGCCATCCGCGTaGGTGGAGTCGAGCACGGCACGGGCAGGCGGAGGGACGGCGGGG +
Preference number: 6 (lower is better)
Translates to: FSSMQAWCRALMPSA*VESSTARAGGGTAG
Trigger: CCCCGCCGTCCCTCCGCCTGCCCGTGCCGTGCTCGACTCCACCAACGCGGATGGCATCAGCGCCCTGCACCAGGCCTGCATAGATGAGAA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS GCA 72 bp TGCCCCGCGTGGGTCAGCGAATCCATGCCCCCGCCATaGTCAGCCAGCAGACGGCAGGCATCCTCCACACCC +
Preference number: 6 (lower is better)
Translates to: CPAWVSESMPPP*SASRRQASSTP
Trigger: GGGTGTGGAGGATGCCTGCCGTCTGCTGGCTGAGCATGGCGGGGGCATGGATTCGCTGACCCACGCGGGGCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS GCA 72 bp CACAGGGACGCTGCCCCGCGTGGGTCAGCGAATCCATaGCCCCGCCATGCTCAGCCAGCAGACGGCAGGCAT +
Preference number: 6 (lower is better)
Translates to: HRDAAPRGSANP*PRHAQPADGRH
Trigger: ATGCCTGCCGTCTGCTGGCTGAGCATGGCGGGGGCATGGATTCGCTGACCCACGCGGGGCAGCGTCCCTGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS GCA 72 bp CCGCTGCGTGGCCCGCTCCAGCTCCACCTTGAGCTGTaGCAGACGCAGGGTGGTCTCTGTCAGGGCCTCACG +
Preference number: 6 (lower is better)
Translates to: PLRGPLQLHLEL*QTQGGLCQGLT
Trigger: CGTGAGGCCCTGACAGAGACCACCCTGCGTCTGGCACAGCTCAAGGTGGAGCTGGAGCGGGCCACGCAGCGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS TCA 72 bp GTTCCTGCCGCTGCGTGGCCCGCTCCAGCTCCACCTTaGGCTGTGCCAGACGCAGGGTGGTCTCTGTCAGGG +
Preference number: 6 (lower is better)
Translates to: VPAAAWPAPAPP*AVPDAGWSLSG
Trigger: CCCTGACAGAGACCACCCTGCGTCTGGCACAGCTCAAGGTGGAGCTGGAGCGGGCCACGCAGCGGCAGGAAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CCA 72 bp CTCATGGCCAGCTTTTCGATGCTCCCTGGCCGCCTGTaGTCCCTGGCCCTGCCCTTCGGGCGCCTCTCTCTG +
Preference number: 6 (lower is better)
Translates to: LMASFSMLPGRL*SLALPFGRLSL
Trigger: CAGAGAGAGGCGCCCGAAGGGCAGGGCCAGGGACCACAGGCGGCCAGGGAGCATCGAAAAGCTGGCCATGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000013886.9
CDS CCA 72 bp CTCATGGCCAGCTTTTCGATGCTCCCTGGCCGCCTGTaGTCCCTGGCCCTGCCCTTCGGGCGCCTCTGCTCT +
Preference number: 6 (lower is better)
Translates to: LMASFSMLPGRL*SLALPFGRLCS
Trigger: AGAGCAGAGGCGCCCGAAGGGCAGGGCCAGGGACCACAGGCGGCCAGGGAGCATCGAAAAGCTGGCCATGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124248.8
CDS CAA 90 bp TCAGCAAAGCGTTCCTGCCGCTGCGTGGCCCGCTCCAGCTCCACCTaGAGCTGTGCCAGACGCAGGGTGGTCTCTGTCAGGGCCTCACGA +
Preference number: 6 (lower is better)
Translates to: SAKRSCRCVARSSST*SCARRRVVSVRASR
Trigger: TCGTGAGGCCCTGACAGAGACCACCCTGCGTCTGGCACAGCTCAAGGTGGAGCTGGAGCGGGCCACGCAGCGGCAGGAACGCTTTGCTGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS TCA 72 bp CTGAGTGGAGGCCTTCTCAAGGAGGGAGGAGGAGGCTaGGCGCTGCAGACCGAGAACGCCCTCTGTAGCCCT +
Preference number: 6 (lower is better)
Translates to: LSGGLLKEGGGG*ALQTENALCSP
Trigger: AGGGCTACAGAGGGCGTTCTCGGTCTGCAGCGCTCAGCCTCCTCCTCCCTCCTTGAGAAGGCCTCCACTCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS TCA 72 bp GGTCCCTGGAGTCGGCCAGGGGCGCTGCAGAGGCTGTaGGGACATTTGGCTTCACTATCGATCCAGGCTCCC +
Preference number: 6 (lower is better)
Translates to: GPWSRPGALQRL*GHLASLSIQAP
Trigger: GGGAGCCTGGATCGATAGTGAAGCCAAATGTCCTCACAGCCTCTGCAGCGCCCCTGGCCGACTCCAGGGACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS TCA 72 bp CGAGACTGTCGCATAAGGCGGGAGCGGGCCTTCCGCTaGGACTCGGACTCCTCATCACGCACAGGCATCTGG +
Preference number: 6 (lower is better)
Translates to: RDCRIRRERAFR*DSDSSSRTGIW
Trigger: CCAGATGCCTGTGCGTGATGAGGAGTCCGAGTCTCAGCGGAAGGCCCGCTCCCGCCTTATGCGACAGTCTCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS GCA 72 bp GGACCTCCGACGGTCCCTGGAGTCGGCCAGGGGCGCTaGAGAGGCTGTGAGGACATTTGGCTTCACTATCGA +
Preference number: 6 (lower is better)
Translates to: GPPTVPGVGQGR*RGCEDIWLHYR
Trigger: TCGATAGTGAAGCCAAATGTCCTCACAGCCTCTGCAGCGCCCCTGGCCGACTCCAGGGACCGTCGGAGGTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CCA 72 bp GTCGGCCAGGGGCGCTGCAGAGGCTGTGAGGACATTTaGCTTCACTATCGATCCAGGCTCCCTCCTGGAGGG +
Preference number: 6 (lower is better)
Translates to: VGQGRCRGCEDI*LHYRSRLPPGG
Trigger: CCCTCCAGGAGGGAGCCTGGATCGATAGTGAAGCCAAATGTCCTCACAGCCTCTGCAGCGCCCCTGGCCGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS GCA 72 bp GAGGCCTTCTCAAGGAGGGAGGAGGAGGCTGAGCGCTaGAGACCGAGAACGCCCTCTGTAGCCCTCCTTTCT +
Preference number: 6 (lower is better)
Translates to: EAFSRREEEAER*RPRTPSVALLS
Trigger: AGAAAGGAGGGCTACAGAGGGCGTTCTCGGTCTGCAGCGCTCAGCCTCCTCCTCCCTCCTTGAGAAGGCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS GCA 72 bp CCTGCCCCACCAGGCCGGCGCTCCTTTGATAGATCCTaGAAGGAGATCTTCTCTCGGCTGCTCAAACGGCAC +
Preference number: 6 (lower is better)
Translates to: PAPPGRRSFDRS*KEIFSRLLKRH
Trigger: GTGCCGTTTGAGCAGCCGAGAGAAGATCTCCTTGCAGGATCTATCAAAGGAGCGCCGGCCTGGTGGGGCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CCA 72 bp AGGAGGCGTGGCAGCCTCATACAGGGTGAAGGGCTCTaGCACTTTCTGGGCAGGGGTAGGGGTTATTCTGGC +
Preference number: 6 (lower is better)
Translates to: RRRGSLIQGEGL*HFLGRGRGYSG
Trigger: GCCAGAATAACCCCTACCCCTGCCCAGAAAGTGCCAGAGCCCTTCACCCTGTATGAGGCTGCCACGCCTCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CAA 90 bp GCCAGGTCCAAAGGCAGGTCCCCGTCACTGTTGACAGCAGCAATGTaGGCCCCATGGCTCAGGAGGTACCTGGCAATGTCCAGGTACCCA +
Preference number: 6 (lower is better)
Translates to: ARSKGRSPSLLTAAM*APWLRRYLAMSRYP
Trigger: TGGGTACCTGGACATTGCCAGGTACCTCCTGAGCCATGGGGCCAACATTGCTGCTGTCAACAGTGACGGGGACCTGCCTTTGGACCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CCA 72 bp CTACTTGAAGGGACCTGTGACTCCTGGCCTCGGCCCTaGGAGCCTTCCTTTTGGTTCCGAAGGTCCTCCTGT +
Preference number: 6 (lower is better)
Translates to: LLEGTCDSWPRP*EPSFWFRRSSC
Trigger: ACAGGAGGACCTTCGGAACCAAAAGGAAGGCTCCCAGGGCCGAGGCCAGGAGTCACAGGTCCCTTCAAGTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CCA 72 bp CTGGAGACCAAAGCGCCTGGAAAAGGGAGCCTCTTCTaGCAGCACAGGGCTCTTAGGGTTGGAGGACACAGG +
Preference number: 6 (lower is better)
Translates to: LETKAPGKGSLF*QHRALRVGGHR
Trigger: CCTGTGTCCTCCAACCCTAAGAGCCCTGTGCTGCCAGAAGAGGCTCCCTTTTCCAGGCGCTTTGGTCTCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CCA 72 bp CACCAGTGCTCCCTGTCTTCTGGAGACCAAAGCGCCTaGAAAAGGGAGCCTCTTCTGGCAGCACAGGGCTCT +
Preference number: 6 (lower is better)
Translates to: HQCSLSSGDQSA*KREPLLAAQGS
Trigger: AGAGCCCTGTGCTGCCAGAAGAGGCTCCCTTTTCCAGGCGCTTTGGTCTCCAGAAGACAGGGAGCACTGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CAA 72 bp TCAAACGGCACACGGAGCTCCTTCTGTGCTTACTACTaGAAGGGACCTGTGACTCCTGGCCTCGGCCCTGGG +
Preference number: 6 (lower is better)
Translates to: SNGTRSSFCAYY*KGPVTPGLGPG
Trigger: CCCAGGGCCGAGGCCAGGAGTCACAGGTCCCTTCAAGTAGTAAGCACAGAAGGAGCTCCGTGTGCCGTTTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CAA 90 bp CGCCTGGAAAAGGGAGCCTCTTCTGGCAGCACAGGGCTCTTAGGGTaGGAGGACACAGGGGAAGACACACCATTGAGGGCTCTTGGTTCC +
Preference number: 6 (lower is better)
Translates to: RLEKGASSGSTGLLG*EDTGEDTPLRALGS
Trigger: GGAACCAAGAGCCCTCAATGGTGTGTCTTCCCCTGTGTCCTCCAACCCTAAGAGCCCTGTGCTGCCAGAAGAGGCTCCCTTTTCCAGGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CAA 90 bp GTGTACATCTTCCGGAAGCCTCCATCAGGCTCCTCGTGCTCCTGCTaGGATTCTAGAACGAGGTCTCTCTGTGAGTGCTGCCTGCGGACC +
Preference number: 6 (lower is better)
Translates to: VYIFRKPPSGSSCSC*DSRTRSLCECCLRT
Trigger: GGTCCGCAGGCAGCACTCACAGAGAGACCTCGTTCTAGAATCCAAGCAGGAGCACGAGGAGCCTGATGGAGGCTTCCGGAAGATGTACAC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS TCA 72 bp ATCGATCCAGGCTCCCTCCTGGAGGGTGGAACAGAGTaGTCCAAAGAAGGAGGCGTGGCAGCCTCATACAGG +
Preference number: 6 (lower is better)
Translates to: IDPGSLLEGGTE*SKEGGVAASYR
Trigger: CCTGTATGAGGCTGCCACGCCTCCTTCTTTGGATCACTCTGTTCCACCCTCCAGGAGGGAGCCTGGATCGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS GCA 72 bp TCTCTGTCAGGGCCTCACGAAGTCGCTCATTCTCCCTaGGGAGCTCCGTGTACATCTTCCGGAAGCCTCCAT +
Preference number: 6 (lower is better)
Translates to: SLSGPHEVAHSP*GAPCTSSGSLH
Trigger: ATGGAGGCTTCCGGAAGATGTACACGGAGCTCCGCAGGGAGAATGAGCGACTTCGTGAGGCCCTGACAGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CCA 72 bp TCCCCGTCACTGTTGACAGCAGCAATGTTGGCCCCATaGCTCAGGAGGTACCTGGCAATGTCCAGGTACCCA +
Preference number: 6 (lower is better)
Translates to: SPSLLTAAMLAP*LRRYLAMSRYP
Trigger: TGGGTACCTGGACATTGCCAGGTACCTCCTGAGCCATGGGGCCAACATTGCTGCTGTCAACAGTGACGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CCA 72 bp TGGCTTCACTATCGATCCAGGCTCCCTCCTGGAGGGTaGAACAGAGTGATCCAAAGAAGGAGGCGTGGCAGC +
Preference number: 6 (lower is better)
Translates to: WLHYRSRLPPGG*NRVIQRRRRGS
Trigger: GCTGCCACGCCTCCTTCTTTGGATCACTCTGTTCCACCCTCCAGGAGGGAGCCTGGATCGATAGTGAAGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CCA 72 bp TCCGGAAGCCTCCATCAGGCTCCTCGTGCTCCTGCTTaGATTCTAGAACGAGGTCTCTCTGTGAGTGCTGCC +
Preference number: 6 (lower is better)
Translates to: SGSLHQAPRAPA*ILERGLSVSAA
Trigger: GGCAGCACTCACAGAGAGACCTCGTTCTAGAATCCAAGCAGGAGCACGAGGAGCCTGATGGAGGCTTCCGGA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CAA 72 bp CGGATCAATGCTGCATTCTCATCCTTGAGCCGCTGGTaGTCAGCCCGGAGATCAGAGAGGGCCTTCAGCTCC +
Preference number: 6 (lower is better)
Translates to: RINAAFSSLSRW*SARRSERAFSS
Trigger: GGAGCTGAAGGCCCTCTCTGATCTCCGGGCTGACAACCAGCGGCTCAAGGATGAGAATGCAGCATTGATCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CAA 90 bp CTGATGACTCGGATCAATGCTGCATTCTCATCCTTGAGCCGCTGGTaGTCAGCCCGGAGATCAGAGAGGGCCTTCAGCTCCTCTTCCAGC +
Preference number: 6 (lower is better)
Translates to: LMTRINAAFSSLSRW*SARRSERAFSSSSS
Trigger: GCTGGAAGAGGAGCTGAAGGCCCTCTCTGATCTCCGGGCTGACAACCAGCGGCTCAAGGATGAGAATGCAGCATTGATCCGAGTCATCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS TCA 72 bp GGCATAGCACCCCCATTCAGCCAGCACCTTGTGTCATaGAGCAGCAATTCTTCTTCAGCCCGCTTGGCTGCC +
Preference number: 6 (lower is better)
Translates to: GIAPPFSQHLVS*SSNSSSARLAA
Trigger: GGCAGCCAAGCGGGCTGAAGAAGAATTGCTGCTTCATGACACAAGGTGCTGGCTGAATGGGGGTGCTATGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS GCA 72 bp TCTCGGCTGCTCAAACGGCACACGGAGCTCCTTCTGTaGTTACTACTTGAAGGGACCTGTGACTCCTGGCCT +
Preference number: 6 (lower is better)
Translates to: SRLLKRHTELLL*LLLEGTCDSWP
Trigger: AGGCCAGGAGTCACAGGTCCCTTCAAGTAGTAAGCACAGAAGGAGCTCCGTGTGCCGTTTGAGCAGCCGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS GCA 72 bp GACACACCATTGAGGGCTCTTGGTTCCACAGCTGGGTaGTCAGCTGACGCTTCACCTCCCTCATCCTCATCT +
Preference number: 6 (lower is better)
Translates to: DTPLRALGSTAG*SADASPPSSSS
Trigger: AGATGAGGATGAGGGAGGTGAAGCGTCAGCTGAGCACCCAGCTGTGGAACCAAGAGCCCTCAATGGTGTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS GCA 72 bp TGGATTCTAGAACGAGGTCTCTCTGTGAGTGCTGCCTaGGGACCTGGGATCCACCATCCACAGTGCTGCACT +
Preference number: 6 (lower is better)
Translates to: WILERGLSVSAA*GPGIHHPQCCT
Trigger: AGTGCAGCACTGTGGATGGTGGATCCCAGGTCCGCAGGCAGCACTCACAGAGAGACCTCGTTCTAGAATCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS GCA 72 bp TGCTTGGATTCTAGAACGAGGTCTCTCTGTGAGTGCTaGCTGCGGACCTGGGATCCACCATCCACAGTGCTG +
Preference number: 6 (lower is better)
Translates to: CLDSRTRSLCEC*LRTWDPPSTVL
Trigger: CAGCACTGTGGATGGTGGATCCCAGGTCCGCAGGCAGCACTCACAGAGAGACCTCGTTCTAGAATCCAAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CCA 72 bp CTTCTGTGCTTACTACTTGAAGGGACCTGTGACTCCTaGCCTCGGCCCTGGGAGCCTTCCTTTTGGTTCCGA +
Preference number: 6 (lower is better)
Translates to: LLCLLLEGTCDS*PRPWEPSFWFR
Trigger: TCGGAACCAAAAGGAAGGCTCCCAGGGCCGAGGCCAGGAGTCACAGGTCCCTTCAAGTAGTAAGCACAGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CCA 72 bp ACTCGGATCAATGCTGCATTCTCATCCTTGAGCCGCTaGTTGTCAGCCCGGAGATCAGAGAGGGCCTTCAGC +
Preference number: 6 (lower is better)
Translates to: TRINAAFSSLSR*LSARRSERAFS
Trigger: GCTGAAGGCCCTCTCTGATCTCCGGGCTGACAACCAGCGGCTCAAGGATGAGAATGCAGCATTGATCCGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CAA 72 bp TTCCGGAAGCCTCCATCAGGCTCCTCGTGCTCCTGCTaGGATTCTAGAACGAGGTCTCTCTGTGAGTGCTGC +
Preference number: 6 (lower is better)
Translates to: FRKPPSGSSCSC*DSRTRSLCECC
Trigger: GCAGCACTCACAGAGAGACCTCGTTCTAGAATCCAAGCAGGAGCACGAGGAGCCTGATGGAGGCTTCCGGAA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS CCA 72 bp GGACATTTGGCTTCACTATCGATCCAGGCTCCCTCCTaGAGGGTGGAACAGAGTGATCCAAAGAAGGAGGCG +
Preference number: 6 (lower is better)
Translates to: GHLASLSIQAPS*RVEQSDPKKEA
Trigger: CGCCTCCTTCTTTGGATCACTCTGTTCCACCCTCCAGGAGGGAGCCTGGATCGATAGTGAAGCCAAATGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8
CDS TCA 72 bp GAGCCTTCCTTTTGGTTCCGAAGGTCCTCCTGTTTCTaGGCCAGTTCCTCCAAAAGGTTCATCACGTCCTCG +
Preference number: 6 (lower is better)
Translates to: EPSFWFRRSSCF*ASSSKRFITSS
Trigger: CGAGGACGTGATGAACCTTTTGGAGGAACTGGCTCAGAAACAGGAGGACCTTCGGAACCAAAAGGAAGGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000013886.9
ENSMUST00000124248.8