Pregenerated sensors for PPP1R11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036398Ensembl transcript IDs: ENSMUST00000040402.14, ENSMUST00000174711.8
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CACAGCCAGAGGCCTGGAGGGCAGTACCCAGATCCTAGCACCAGCCGGGGAGGGGCTTGGGACTCAAGCTaGGGGTGCAGGTGGCCAAGA | + |
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Preference number: 2 (lower is better) Translates to: HSQRPGGQYPDPSTSRGGAWDSS*GCRWPR Trigger: TCTTGGCCACCTGCACCCTCAGCTTGAGTCCCAAGC...CCCTCCCCGGCTGGTGCTAGGATCTGGGTACTGCCCTCCAGGCCTCTGGCTGTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040402.14 |
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| 3UTR-3UTR TCA 90 bp | CACCAGCCGGGGAGGGCTGAGAGAGCAAGACACCTGGGTTGGCAGACACCAAAGTCCATTAGGTGTGAATaGCAAAGACCTCTCCTAACT | + |
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Preference number: 2 (lower is better) Translates to: HQPGRAERARHLGWQTPKSIRCE*QRPLLT Trigger: AGTTAGGAGAGGTCTTTGTCATTCACACCTAATGGA...CTTTGGTGTCTGCCAACCCAGGTGTCTTGCTCTCTCAGCCCTCCCCGGCTGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040402.14 |
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| 3UTR-3UTR CCA 90 bp | GTAAGAGGAGCAGAAGGGCCAGGGAACCCTATAGTCTCCACACAACCTTACATCGGAGAACGGAGGCAATaGGTGGAGTCCCCATGTCAG | + |
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Preference number: 2 (lower is better) Translates to: VRGAEGPGNPIVSTQPYIGERRQ*VESPCQ Trigger: CTGACATGGGGACTCCACCCATTGCCTCCGTTCTCC...GATGTAAGGTTGTGTGGAGACTATAGGGTTCCCTGGCCCTTCTGCTCCTCTTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040402.14 |
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| 3UTR CCA 72 bp | AGCACCAGCCGGGGAGGGCTGAGAGAGCAAGACACCTaGGTTGGCAGACACCAAAGCCTAGGCAGGAAAGGG | + |
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Preference number: 3 (lower is better) Translates to: STSRGGLREQDT*VGRHQSLGRKG Trigger: CCCTTTCCTGCCTAGGCTTTGGTGTCTGCCAACCCAGGTGTCTTGCTCTCTCAGCCCTCCCCGGCTGGTGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040402.14 |
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| 3UTR TCA 72 bp | GGCAGTACCCAGATCCTAGCACCAGCCGGGGAGGGCTaGGAGAGCAAGACACCTGGGTTGGCAGACACCAAA | + |
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Preference number: 3 (lower is better) Translates to: GSTQILAPAGEG*ESKTPGLADTK Trigger: TTTGGTGTCTGCCAACCCAGGTGTCTTGCTCTCTCAGCCCTCCCCGGCTGGTGCTAGGATCTGGGTACTGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040402.14 |
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| 3UTR-3UTR CAA 90 bp | CACAGCCAGAGGCCTGGAGGGCAGTACCCAGATCCTAGCACCAGCCGGGGAGGGTGTCCCCTCATCTCTTaGCTTTCTCCCTCTTTCCTT | + |
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Preference number: 3 (lower is better) Translates to: HSQRPGGQYPDPSTSRGGCPLIS*LSPSFL Trigger: AAGGAAAGAGGGAGAAAGCAAAGAGATGAGGGGACA...CCCTCCCCGGCTGGTGCTAGGATCTGGGTACTGCCCTCCAGGCCTCTGGCTGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040402.14 |
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| 3UTR CCA 72 bp | AGGAGACGGAAGAAGGGGGCAGGAGAACGGAGGCAATaGGTGGAGTCCCCATGTCAGATGGATATATTTGGG | + |
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Preference number: 3 (lower is better) Translates to: RRRKKGAGERRQ*VESPCQMDIFG Trigger: CCCAAATATATCCATCTGACATGGGGACTCCACCCATTGCCTCCGTTCTCCTGCCCCCTTCTTCCGTCTCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040402.14 |
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| CDS-3UTR GCA 90 bp | CGGAGGCAATGGGTGGAGTCCCCATGTCAGATGGATATATTTGGGGCAGGCAGAAGTGGTTGGGGTGGGTaGTGGGGTTGTAGGACGCCG | + |
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Preference number: 4 (lower is better) Translates to: RRQWVESPCQMDIFGAGRSGWGG*WGCRTP Trigger: CGGCGTCCTACAACCCCAGCACCCACCCCAACCACT...TCTGCCTGCCCCAAATATATCCATCTGACATGGGGACTCCACCCATTGCCTCCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000040402.14 |
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| CDS-3UTR GCA 90 bp | GAGTCCCCATGTCAGATGGATATATTTGGGGCAGGCAGACACATGAATGGTGAGAGTGGTTGGGGTGGGTaGTGGGGTTGTAGGACGCCG | + |
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Preference number: 4 (lower is better) Translates to: ESPCQMDIFGAGRHMNGESGWGG*WGCRTP Trigger: CGGCGTCCTACAACCCCAGCACCCACCCCAACCACT...CTCACCATTCATGTGTCTGCCTGCCCCAAATATATCCATCTGACATGGGGACTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000040402.14 ENSMUST00000174711.8 |
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| CDS-3UTR TCA 90 bp | ACCAAGATGCCTGGATCCCAGGCATGGGAGCAAACTGTAGGGAAGCAGGGGCTGTTCATAGTTAGGCTCTaGTTCTCTGGCTCGGTTGTC | + |
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Preference number: 4 (lower is better) Translates to: TKMPGSQAWEQTVGKQGLFIVRL*FSGSVV Trigger: GACAACCGAGCCAGAGAATCAGAGCCTAACTATGAA...CAGCCCCTGCTTCCCTACAGTTTGCTCCCATGCCTGGGATCCAGGCATCTTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040402.14 |
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| CDS-3UTR GCA 90 bp | CCATGTCAGATGGATATATTTGGGGCAGGCAGACACATGAATGGTGAGAGGGATGAGCGTCGCCCCATATaGTCATTGTCCACAGTGTCA | + |
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Preference number: 4 (lower is better) Translates to: PCQMDIFGAGRHMNGERDERRPI*SLSTVS Trigger: TGACACTGTGGACAATGAGCATATGGGGCGACGCTC...ATCCCTCTCACCATTCATGTGTCTGCCTGCCCCAAATATATCCATCTGACATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040402.14 ENSMUST00000174711.8 |
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| CDS-3UTR CCA 90 bp | GTAAGAGGAGCAGAAGGGCCAGGGAACCCTATAGTCTCCACACAACCTTACATCCTCCACCTTCTTCTCTaGCTTGCGTTTCCGAAGTTT | + |
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Preference number: 4 (lower is better) Translates to: VRGAEGPGNPIVSTQPYILHLLL*LAFPKF Trigger: AAACTTCGGAAACGCAAGCCAGAGAAGAAGGTGGAG...GATGTAAGGTTGTGTGGAGACTATAGGGTTCCCTGGCCCTTCTGCTCCTCTTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040402.14 |
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| CDS-3UTR TCA 90 bp | GAGTCCCCATGTCAGATGGATATATTTGGGGCAGGCAGACACATGAATGGTGAGTTCATAGTTAGGCTCTaGTTCTCTGGCTCGGTTGTC | + |
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Preference number: 4 (lower is better) Translates to: ESPCQMDIFGAGRHMNGEFIVRL*FSGSVV Trigger: GACAACCGAGCCAGAGAATCAGAGCCTAACTATGAA...CTCACCATTCATGTGTCTGCCTGCCCCAAATATATCCATCTGACATGGGGACTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040402.14 ENSMUST00000174711.8 |
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| CDS-3UTR CCA 90 bp | GAGTCCCCATGTCAGATGGATATATTTGGGGCAGGCAGACACATGAATGGTGAGCTCCACCTTCTTCTCTaGCTTGCGTTTCCGAAGTTT | + |
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Preference number: 4 (lower is better) Translates to: ESPCQMDIFGAGRHMNGELHLLL*LAFPKF Trigger: AAACTTCGGAAACGCAAGCCAGAGAAGAAGGTGGAG...CTCACCATTCATGTGTCTGCCTGCCCCAAATATATCCATCTGACATGGGGACTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040402.14 ENSMUST00000174711.8 |
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| 3UTR CAA 72 bp | AAATCATTGGCTCTAAGTCAGTGGTCTCAGCCAGCTTaGTCAGAAATGTTATATTCAGGACATGGCTATTTT | + |
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Preference number: 4 (lower is better) Translates to: KSLALSQWSQPA*SEMLYSGHGYF Trigger: AAAATAGCCATGTCCTGAATATAACATTTCTGACAAAGCTGGCTGAGACCACTGACTTAGAGCCAATGATTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040402.14 |
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| CDS-3UTR CAA 90 bp | CGGAGGCAATGGGTGGAGTCCCCATGTCAGATGGATATATTTGGGGCAGGCAGACGCCCCATATGCTCATaGTCCACAGTGTCACTGGAC | + |
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Preference number: 5 (lower is better) Translates to: RRQWVESPCQMDIFGAGRRPICS*STVSLD Trigger: GTCCAGTGACACTGTGGACAATGAGCATATGGGGCG...TCTGCCTGCCCCAAATATATCCATCTGACATGGGGACTCCACCCATTGCCTCCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040402.14 |
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| CDS-3UTR CAA 90 bp | CCTCTTCCTCTTCTCTATCACTCAGGAGACGGAAGAAGGGGGCAGGAGAACGGAACCTTCTTCTCTGGCTaGCGTTTCCGAAGTTTCATA | + |
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Preference number: 5 (lower is better) Translates to: PLPLLYHSGDGRRGQENGTFFSG*RFRSFI Trigger: TATGAAACTTCGGAAACGCAAGCCAGAGAAGAAGGT...TCCGTTCTCCTGCCCCCTTCTTCCGTCTCCTGAGTGATAGAGAAGAGGAAGAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040402.14 |
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| CDS-3UTR CAA 90 bp | CCATGTCAGATGGATATATTTGGGGCAGGCAGACACATGAATGGTGAGAGGGATCGCCCCATATGCTCATaGTCCACAGTGTCACTGGAC | + |
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Preference number: 5 (lower is better) Translates to: PCQMDIFGAGRHMNGERDRPICS*STVSLD Trigger: GTCCAGTGACACTGTGGACAATGAGCATATGGGGCG...ATCCCTCTCACCATTCATGTGTCTGCCTGCCCCAAATATATCCATCTGACATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040402.14 ENSMUST00000174711.8 |
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| CDS-3UTR CAA 90 bp | TCCCCATGTCAGATGGATATATTTGGGGCAGGCAGACACATGAATGGTGAGAGGACCTTCTTCTCTGGCTaGCGTTTCCGAAGTTTCATA | + |
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Preference number: 5 (lower is better) Translates to: SPCQMDIFGAGRHMNGERTFFSG*RFRSFI Trigger: TATGAAACTTCGGAAACGCAAGCCAGAGAAGAAGGT...CCTCTCACCATTCATGTGTCTGCCTGCCCCAAATATATCCATCTGACATGGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040402.14 ENSMUST00000174711.8 |
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