Pregenerated sensors for PPP1CA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040385Ensembl transcript IDs: ENSMUST00000046094.6
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GACCAGATGGGTTGCCCCAGGATCTGGCTGCCAGCCATGCAAGGCTaGAGACCCACAATCTGGTCTGCCATTGCCCTGAGCTGCAGCCTT | + |
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Preference number: 1 (lower is better) Translates to: DQMGCPRIWLPAMQG*RPTIWSAIALSCSL Trigger: AAGGCTGCAGCTCAGGGCAATGGCAGACCAGATTGTGGGTCTCCAGCCTTGCATGGCTGGCAGCCAGATCCTGGGGCAACCCATCTGGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| 3UTR GCA 90 bp | TTGACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCTaGCAGCCATGCAAGGCTGGAGACCCACAATCTGGTCTGCCATTG | + |
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Preference number: 1 (lower is better) Translates to: LTFIQETRWVAPGSG*QPCKAGDPQSGLPL Trigger: CAATGGCAGACCAGATTGTGGGTCTCCAGCCTTGCATGGCTGGCAGCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAATAAAGGTCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| 3UTR-3UTR TCA 90 bp | TTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCTGCCAGCCATGCAAGGCTGGCTGTGTGTTCCCCGTaGCGGGTGGGCCTGAGAGGC | + |
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Preference number: 2 (lower is better) Translates to: FKRPDGLPQDLAASHARLAVCSP*RVGLRG Trigger: GCCTCTCAGGCCCACCCGTCACGGGGAACACACAGC...CAGCCTTGCATGGCTGGCAGCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| 3UTR-3UTR GCA 90 bp | TTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCTGCCAGCCATGCAAGGCTGTGCAGCCACCACAGGTaGTGGTGGGAGGGAGCCCTG | + |
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Preference number: 2 (lower is better) Translates to: FKRPDGLPQDLAASHARLCSHHR*WWEGAL Trigger: CAGGGCTCCCTCCCACCAGCACCTGTGGTGGCTGCA...CAGCCTTGCATGGCTGGCAGCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| 3UTR-3UTR GCA 90 bp | CCCCAGGATCTGGCTGCCAGCCATGCAAGGCTGGAGACCCACAATCTGGTCTGCCCCCAGGATTCCACTTaGAGCCACCACAGGTGCTGG | + |
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Preference number: 2 (lower is better) Translates to: PQDLAASHARLETHNLVCPQDST*SHHRCW Trigger: CCAGCACCTGTGGTGGCTGCAAGTGGAATCCTGGGG...GCAGACCAGATTGTGGGTCTCCAGCCTTGCATGGCTGGCAGCCAGATCCTGGGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| 3UTR-3UTR CCA 90 bp | AGCCATGCAAGGCTGGAGACCCACAATCTGGTCTGCCATTGCCCTGAGCTGCAGAGCCACCACAGGTGCTaGTGGGAGGGAGCCCTGGGA | + |
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Preference number: 2 (lower is better) Translates to: SHARLETHNLVCHCPELQSHHRC*WEGALG Trigger: TCCCAGGGCTCCCTCCCACCAGCACCTGTGGTGGCT...CTGCAGCTCAGGGCAATGGCAGACCAGATTGTGGGTCTCCAGCCTTGCATGGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| 3UTR-3UTR CCA 90 bp | AGCTGCAGCCTTGGCCCCAGGATTCCACTTGCAGCCACCACAGGTGCTGGTGGGGGCCAGTGTGACCCATaGCAGCATGATTTCTGTACA | + |
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Preference number: 2 (lower is better) Translates to: SCSLGPRIPLAATTGAGGGQCDP*QHDFCT Trigger: TGTACAGAAATCATGCTGCCATGGGTCACACTGGCC...CCCACCAGCACCTGTGGTGGCTGCAAGTGGAATCCTGGGGCCAAGGCTGCAGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| 3UTR-3UTR CCA 90 bp | GACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCTGCCAGCCATGCACCACAGGTGCTGGTaGGAGGGAGCCCTGGGAGAT | + |
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Preference number: 2 (lower is better) Translates to: DLYSRDQMGCPRIWLPAMHHRCW*EGALGD Trigger: ATCTCCCAGGGCTCCCTCCCACCAGCACCTGTGGTG...CATGGCTGGCAGCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAATAAAGGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| 3UTR-3UTR CCA 90 bp | GCTTTGACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCTGCCAGCCTGAGCTGCAGCCTTaGCCCCAGGATTCCACTTGC | + |
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Preference number: 2 (lower is better) Translates to: ALTFIQETRWVAPGSGCQPELQP*PQDSTC Trigger: GCAAGTGGAATCCTGGGGCCAAGGCTGCAGCTCAGG...CTGGCAGCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAATAAAGGTCAAAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| 3UTR-3UTR CCA 90 bp | CCAGCTTTGACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCTGCTGGAGACCCACAATCTaGTCTGCCATTGCCCTGAGC | + |
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Preference number: 2 (lower is better) Translates to: PALTFIQETRWVAPGSGCWRPTI*SAIALS Trigger: GCTCAGGGCAATGGCAGACCAGATTGTGGGTCTCCA...GCAGCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAATAAAGGTCAAAGCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| 3UTR CCA 72 bp | TGGCTGCCAGCCATGCAAGGCTGGAGACCCACAATCTaGTCTGCCATTGCCCTGAGCTGCAGCCTTGGCCCC | + |
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Preference number: 3 (lower is better) Translates to: WLPAMQGWRPTI*SAIALSCSLGP Trigger: GGGGCCAAGGCTGCAGCTCAGGGCAATGGCAGACCAGATTGTGGGTCTCCAGCCTTGCATGGCTGGCAGCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| 3UTR CCA 72 bp | GGTTGCCCCAGGATCTGGCTGCCAGCCATGCAAGGCTaGAGACCCACAATCTGGTCTGCCATTGCCCTGAGC | + |
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Preference number: 3 (lower is better) Translates to: GCPRIWLPAMQG*RPTIWSAIALS Trigger: GCTCAGGGCAATGGCAGACCAGATTGTGGGTCTCCAGCCTTGCATGGCTGGCAGCCAGATCCTGGGGCAACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| 3UTR GCA 72 bp | ATTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCTaGCAGCCATGCAAGGCTGGAGACCCACAATCTGGT | + |
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Preference number: 3 (lower is better) Translates to: IQETRWVAPGSG*QPCKAGDPQSG Trigger: ACCAGATTGTGGGTCTCCAGCCTTGCATGGCTGGCAGCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| 3UTR TCA 72 bp | AATAAAGGAAAGACACTTAACGCTGTGTGTTCCCCGTaGCGGGTGGGCCTGAGAGGCCAGTGTGACCCATGG | + |
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Preference number: 3 (lower is better) Translates to: NKGKTLNAVCSP*RVGLRGQCDPW Trigger: CCATGGGTCACACTGGCCTCTCAGGCCCACCCGTCACGGGGAACACACAGCGTTAAGTGTCTTTCCTTTATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| 3UTR CCA 72 bp | GAGAATCCAGCTTTGACCTTTATTCAAGAGACCAGATaGGTTGCCCCAGGATCTGGCTGCCAGCCATGCAAG | + |
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Preference number: 3 (lower is better) Translates to: ENPALTFIQETR*VAPGSGCQPCK Trigger: CTTGCATGGCTGGCAGCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAATAAAGGTCAAAGCTGGATTCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR TCA 90 bp | AGCTGCAGCCTTGGCCCCAGGATTCCACTTGCAGCCACCACAGGTGCTGGTGGGCGGGGTTCAGGCCGCTaGACTGCCCATACTTGCCCT | + |
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Preference number: 4 (lower is better) Translates to: SCSLGPRIPLAATTGAGGRGSGR*TAHTCP Trigger: AGGGCAAGTATGGGCAGTTCAGCGGCCTGAACCCCG...CCCACCAGCACCTGTGGTGGCTGCAAGTGGAATCCTGGGGCCAAGGCTGCAGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR TCA 90 bp | TTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCTGCCAGCCATGCAAGGCTGGTTCTTCCCAGGCCGTaGGCCCTGCACTTCCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: FKRPDGLPQDLAASHARLVLPRP*ALHFQQ Trigger: CTGCTGGAAGTGCAGGGCTCACGGCCTGGGAAGAAC...CAGCCTTGCATGGCTGGCAGCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR TCA 90 bp | CTGAGAGGCCAGTGTGACCCATGGCAGCATGATTTCTGTACAAACGATCTGGGGAATTGCGGGGTGGAGTaGTGGGCCGGCCTCCGGGGT | + |
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Preference number: 4 (lower is better) Translates to: LRGQCDPWQHDFCTNDLGNCGVE*WAGLRG Trigger: ACCCCGGAGGCCGGCCCATCACTCCACCCCGCAATT...CCCCAGATCGTTTGTACAGAAATCATGCTGCCATGGGTCACACTGGCCTCTCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR GCA 90 bp | AGCTGCAGCCTTGGCCCCAGGATTCCACTTGCAGCCACCACAGGTGCTGGTGGGCCAAGAAGAGGTAGTTaGTCTCTGGAGGGAAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: SCSLGPRIPLAATTGAGGPRRGS*SLEGSH Trigger: GTGGCTTCCCTCCAGAGAGCAACTACCTCTTCTTGG...CCCACCAGCACCTGTGGTGGCTGCAAGTGGAATCCTGGGGCCAAGGCTGCAGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR TCA 90 bp | CTGCCAGCCATGCAAGGCTGGAGACCCACAATCTGGTCTGCCATTGCCCTGAGCAAATCTCCCGGGATTTaGGGCACAGACCACGGATCT | + |
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Preference number: 4 (lower is better) Translates to: LPAMQGWRPTIWSAIALSKSPGI*GTDHGS Trigger: AGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTT...GCTCAGGGCAATGGCAGACCAGATTGTGGGTCTCCAGCCTTGCATGGCTGGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR TCA 90 bp | CCCCAGGATCTGGCTGCCAGCCATGCAAGGCTGGAGACCCACAATCTGGTCTGCTCTTATCAGCGGGCTTaGGGATCTGGAAGGAACACA | + |
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Preference number: 4 (lower is better) Translates to: PQDLAASHARLETHNLVCSYQRA*GSGRNT Trigger: TGTGTTCCTTCCAGATCCTCAAGCCCGCTGATAAGA...GCAGACCAGATTGTGGGTCTCCAGCCTTGCATGGCTGGCAGCCAGATCCTGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR GCA 90 bp | CAAGGCTGGAGACCCACAATCTGGTCTGCCATTGCCCTGAGCTGCAGCCTTGGCATCTGCTCCATGGATTaGAAGTCTGGAGACAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: QGWRPTIWSAIALSCSLGICSMD*KSGDRP Trigger: GGGCCTGTCTCCAGACTTGCAATCCATGGAGCAGAT...GCCAAGGCTGCAGCTCAGGGCAATGGCAGACCAGATTGTGGGTCTCCAGCCTTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR CCA 90 bp | CAAGGCTGGAGACCCACAATCTGGTCTGCCATTGCCCTGAGCTGCAGCCTTGGCCCAGCAACAGGCAGATaGTCTCCAAAGACTGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: QGWRPTIWSAIALSCSLGPATGR*SPKTAC Trigger: GCAAGCAGTCTTTGGAGACCATCTGCCTGTTGCTGG...GCCAAGGCTGCAGCTCAGGGCAATGGCAGACCAGATTGTGGGTCTCCAGCCTTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR TCA 90 bp | CAAGGCTGGAGACCCACAATCTGGTCTGCCATTGCCCTGAGCTGCAGCCTTGGCCCATCTTCTACAACCTaGTGTGCTCTGCAGATGAGG | + |
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Preference number: 4 (lower is better) Translates to: QGWRPTIWSAIALSCSLGPSSTT*CALQMR Trigger: CCTCATCTGCAGAGCACATCAGGTTGTAGAAGATGG...GCCAAGGCTGCAGCTCAGGGCAATGGCAGACCAGATTGTGGGTCTCCAGCCTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR CCA 90 bp | AATCCAGCTTTGACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCGGCAGAATTGCGGGGTaGAGTGATGGGCCGGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: NPALTFIQETRWVAPGSGGRIAG*SDGPAS Trigger: GGAGGCCGGCCCATCACTCCACCCCGCAATTCTGCC...GCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAATAAAGGTCAAAGCTGGATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR TCA 90 bp | GTGGGCCTGAGAGGCCAGTGTGACCCATGGCAGCATGATTTCTGTACAAACGATTGTCACCACAGATCTTaGGGGGCGCCTCAAGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: VGLRGQCDPWQHDFCTNDCHHRS*GAPQAP Trigger: TGGAGCTTGAGGCGCCCCTCAAGATCTGTGGTGACA...ATCGTTTGTACAGAAATCATGCTGCCATGGGTCACACTGGCCTCTCAGGCCCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR TCA 90 bp | TTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCTGCCAGCCATGCAAGGCTGACAGTAGTTGGGAGCTaGGAAGAGTGTCACCAACTG | + |
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Preference number: 4 (lower is better) Translates to: FKRPDGLPQDLAASHARLTVVGS*EECHQL Trigger: CAGTTGGTGACACTCTTCTCAGCTCCCAACTACTGT...CAGCCTTGCATGGCTGGCAGCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR CCA 90 bp | GCTTTGACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCTGCCAGCATGGATTGCAAGTCTaGAGACAGGCCCCCGTGGCA | + |
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Preference number: 4 (lower is better) Translates to: ALTFIQETRWVAPGSGCQHGLQV*RQAPVA Trigger: TGCCACGGGGGCCTGTCTCCAGACTTGCAATCCATG...CTGGCAGCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAATAAAGGTCAAAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR TCA 90 bp | GCTTTGACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCTGCCAGTTCTCGCCCCAGCCTTaGACATCCTTGTCAGGGTCA | + |
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Preference number: 4 (lower is better) Translates to: ALTFIQETRWVAPGSGCQFSPQP*TSLSGS Trigger: TGACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAA...CTGGCAGCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAATAAAGGTCAAAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR GCA 90 bp | CCAGCTTTGACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCTGCTCGTTCTCTGTCAGCTaGACGTTCTTCCCAGGCCGT | + |
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Preference number: 4 (lower is better) Translates to: PALTFIQETRWVAPGSGCSFSVS*TFFPGR Trigger: ACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGA...GCAGCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAATAAAGGTCAAAGCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR CCA 90 bp | GTGACCCATGGCAGCATGATTTCTGTACAAACGATCTGGGGCAGAAGGGCAGCAGCTTGTGCAGGAACTTaGCTACCACCTCAGCCCCAA | + |
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Preference number: 4 (lower is better) Translates to: VTHGSMISVQTIWGRRAAACAGT*LPPQPQ Trigger: TTGGGGCTGAGGTGGTAGCCAAGTTCCTGCACAAGC...TGCTGCCCTTCTGCCCCAGATCGTTTGTACAGAAATCATGCTGCCATGGGTCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR CCA 90 bp | AGCCATGCAAGGCTGGAGACCCACAATCTGGTCTGCCATTGCCCTGAGCTGCAGACTCTCCACAGTAGTTaGGAGCTGAGAAGAGTGTCA | + |
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Preference number: 4 (lower is better) Translates to: SHARLETHNLVCHCPELQTLHSS*ELRRVS Trigger: TGACACTCTTCTCAGCTCCCAACTACTGTGGAGAGT...CTGCAGCTCAGGGCAATGGCAGACCAGATTGTGGGTCTCCAGCCTTGCATGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR CCA 90 bp | GTGGGCCTGAGAGGCCAGTGTGACCCATGGCAGCATGATTTCTGTACAAACGATGCGGGCTTGAGGATCTaGAAGGAACACATGAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: VGLRGQCDPWQHDFCTNDAGLRI*KEHMRV Trigger: GACCCTCATGTGTTCCTTCCAGATCCTCAAGCCCGC...ATCGTTTGTACAGAAATCATGCTGCCATGGGTCACACTGGCCTCTCAGGCCCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR TCA 90 bp | GTGACCCATGGCAGCATGATTTCTGTACAAACGATCTGGGGCAGAAGGGCAGCAGATGTGCTCTGCAGATaGGGTCCAAATCATGCTTGT | + |
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Preference number: 4 (lower is better) Translates to: VTHGSMISVQTIWGRRAADVLCR*GPNHAC Trigger: ACAAGCATGATTTGGACCTCATCTGCAGAGCACATC...TGCTGCCCTTCTGCCCCAGATCGTTTGTACAGAAATCATGCTGCCATGGGTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR GCA 90 bp | CCAGCTTTGACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCTGCATGAGGTCCAAATCATaGTTGTGCAGGAACTTGGCT | + |
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Preference number: 4 (lower is better) Translates to: PALTFIQETRWVAPGSGCMRSKS*LCRNLA Trigger: AGCCAAGTTCCTGCACAAGCATGATTTGGACCTCAT...GCAGCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAATAAAGGTCAAAGCTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR GCA 90 bp | CTGAGAGGCCAGTGTGACCCATGGCAGCATGATTTCTGTACAAACGATCTGGGGTTCTACAACCTGATGTaGTCTGCAGATGAGGTCCAA | + |
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Preference number: 4 (lower is better) Translates to: LRGQCDPWQHDFCTNDLGFYNLM*SADEVQ Trigger: TTGGACCTCATCTGCAGAGCACATCAGGTTGTAGAA...CCCCAGATCGTTTGTACAGAAATCATGCTGCCATGGGTCACACTGGCCTCTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR CCA 90 bp | CCAGCTTTGACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCTGCTCACCAACTGTCTCTTaGCAAAGAACTCATAGCCAT | + |
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Preference number: 4 (lower is better) Translates to: PALTFIQETRWVAPGSGCSPTVS*QRTHSH Trigger: ATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGA...GCAGCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAATAAAGGTCAAAGCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR TCA 90 bp | AATCCAGCTTTGACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCAATTCTCCGGGTATCTaGTCTTATAGGCCAGCAACA | + |
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Preference number: 4 (lower is better) Translates to: NPALTFIQETRWVAPGSGNSPGI*SYRPAT Trigger: TGTTGCTGGCCTATAAGATCAGATACCCGGAGAATT...GCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAATAAAGGTCAAAGCTGGATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS GCA 90 bp | TCCCGGGATTTGAGGCACAGACCACGGATCTCGTTCTCTGTCAGCTaGACGTTCTTCCCAGGCCGTGAGCCCTGCACTTCCAGCAGGCGC | + |
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Preference number: 5 (lower is better) Translates to: SRDLRHRPRISFSVS*TFFPGREPCTSSRR Trigger: GCGCCTGCTGGAAGTGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS GCA 90 bp | CGGGGTGGAGTGATGGGCCGGCCTCCGGGGTTCAGGCCGCTGAACTaGCCATACTTGCCCTTATTCTTATCAGCGGGCTTGAGGATCTGG | + |
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Preference number: 5 (lower is better) Translates to: RGGVMGRPPGFRPLN*PYLPLFLSAGLRIW Trigger: CCAGATCCTCAAGCCCGCTGATAAGAATAAGGGCAAGTATGGGCAGTTCAGCGGCCTGAACCCCGGAGGCCGGCCCATCACTCCACCCCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS GCA 90 bp | AGGCCCTGGTCAGGCACGTCTGTGGGCCGCATAATACGCCTAATCTaGTCCATGGATTGCAAGTCTGGAGACAGGCCCCCGTGGCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: RPWSGTSVGRIIRLI*SMDCKSGDRPPWQQ Trigger: CTGCTGCCACGGGGGCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGACCAGGGCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR CAA 90 bp | CTGCCAGCCATGCAAGGCTGGAGACCCACAATCTGGTCTGCCATTGCCCTGAGCTTGGCTTTGGCAGAATaGCGGGGTGGAGTGATGGGC | + |
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Preference number: 5 (lower is better) Translates to: LPAMQGWRPTIWSAIALSLALAE*RGGVMG Trigger: GCCCATCACTCCACCCCGCAATTCTGCCAAAGCCAA...GCTCAGGGCAATGGCAGACCAGATTGTGGGTCTCCAGCCTTGCATGGCTGGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR CAA 90 bp | TTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCTGCCAGCCATGCAAGGCTGATGTCACCACAGATCTaGAGGGGCGCCTCAAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: FKRPDGLPQDLAASHARLMSPQI*RGASSS Trigger: GGAGCTTGAGGCGCCCCTCAAGATCTGTGGTGACAT...CAGCCTTGCATGGCTGGCAGCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS CCA 90 bp | TCACCACAGATCTTGAGGGGCGCCTCAAGCTCCAGAAGAATGGGCTaGCTCAGGAAAATCTCCCGGGATTTGAGGCACAGACCACGGATC | + |
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Preference number: 5 (lower is better) Translates to: SPQILRGASSSRRMG*LRKISRDLRHRPRI Trigger: GATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGATCTGTGGTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR CAA 90 bp | ATTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCTGCCAGCCATGCAAGGCTAAAATCTCCCGGGATTaGAGGCACAGACCACGGATC | + |
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Preference number: 5 (lower is better) Translates to: IQETRWVAPGSGCQPCKAKISRD*RHRPRI Trigger: GATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTT...AGCCTTGCATGGCTGGCAGCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS TCA 90 bp | CAAGCTCCAGAAGAATGGGCTGGCTCAGGAAAATCTCCCGGGATTTaGGGCACAGACCACGGATCTCGTTCTCTGTCAGCTGCACGTTCT | + |
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Preference number: 5 (lower is better) Translates to: QAPEEWAGSGKSPGI*GTDHGSRSLSAARS Trigger: AGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR CAA 90 bp | CCAGCTTTGACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCTGCATGATGGAGTCCAGGTaGAGCTTCTCGCTGTCGGAC | + |
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Preference number: 5 (lower is better) Translates to: PALTFIQETRWVAPGSGCMMESR*SFSLSD Trigger: GTCCGACAGCGAGAAGCTCAACCTGGACTCCATCAT...GCAGCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAATAAAGGTCAAAGCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR CAA 90 bp | GTGACCCATGGCAGCATGATTTCTGTACAAACGATCTGGGGCAGAAGGGCAGCAATTCTCGCCCCAGCCTaGAACATCCTTGTCAGGGTC | + |
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Preference number: 5 (lower is better) Translates to: VTHGSMISVQTIWGRRAAILAPA*NILVRV Trigger: GACCCTGACAAGGATGTTCAAGGCTGGGGCGAGAAT...TGCTGCCCTTCTGCCCCAGATCGTTTGTACAGAAATCATGCTGCCATGGGTCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR CAA 90 bp | AATCCAGCTTTGACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCGCAATGGGCAGGCAGTaGAAGCAGTCAGTGAACGTC | + |
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Preference number: 5 (lower is better) Translates to: NPALTFIQETRWVAPGSGAMGRQ*KQSVNV Trigger: GACGTTCACTGACTGCTTCAACTGCCTGCCCATTGC...GCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAATAAAGGTCAAAGCTGGATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR CAA 90 bp | AATCCAGCTTTGACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCAGGTCCAAATCATGCTaGTGCAGGAACTTGGCTACC | + |
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Preference number: 5 (lower is better) Translates to: NPALTFIQETRWVAPGSGRSKSC*CRNLAT Trigger: GGTAGCCAAGTTCCTGCACAAGCATGATTTGGACCT...GCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAATAAAGGTCAAAGCTGGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR CAA 90 bp | ATTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCTGCCAGCCATGCAAGGCTTTCCACAGTTTGATGTaGTATCTTCTCTTGCATTCA | + |
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Preference number: 5 (lower is better) Translates to: IQETRWVAPGSGCQPCKAFHSLM*YLLLHS Trigger: TGAATGCAAGAGAAGATACAACATCAAACTGTGGAA...AGCCTTGCATGGCTGGCAGCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS-3UTR CAA 90 bp | AATCCAGCTTTGACCTTTATTCAAGAGACCAGATGGGTTGCCCCAGGATCTGGCCTGAACTGCCCATACTaGCCCTTATTCTTATCAGCG | + |
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Preference number: 5 (lower is better) Translates to: NPALTFIQETRWVAPGSGLNCPY*PLFLSA Trigger: CGCTGATAAGAATAAGGGCAAGTATGGGCAGTTCAG...GCCAGATCCTGGGGCAACCCATCTGGTCTCTTGAATAAAGGTCAAAGCTGGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS GCA 72 bp | GTGATGGGCCGGCCTCCGGGGTTCAGGCCGCTGAACTaGCCATACTTGCCCTTATTCTTATCAGCGGGCTTG | + |
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Preference number: 6 (lower is better) Translates to: VMGRPPGFRPLN*PYLPLFLSAGL Trigger: CAAGCCCGCTGATAAGAATAAGGGCAAGTATGGGCAGTTCAGCGGCCTGAACCCCGGAGGCCGGCCCATCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS GCA 72 bp | TTGAGGCACAGACCACGGATCTCGTTCTCTGTCAGCTaGACGTTCTTCCCAGGCCGTGAGCCCTGCACTTCC | + |
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Preference number: 6 (lower is better) Translates to: LRHRPRISFSVS*TFFPGREPCTS Trigger: GGAAGTGCAGGGCTCACGGCCTGGGAAGAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS CAA 72 bp | CGGCCTCCGGGGTTCAGGCCGCTGAACTGCCCATACTaGCCCTTATTCTTATCAGCGGGCTTGAGGATCTGG | + |
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Preference number: 6 (lower is better) Translates to: RPPGFRPLNCPY*PLFLSAGLRIW Trigger: CCAGATCCTCAAGCCCGCTGATAAGAATAAGGGCAAGTATGGGCAGTTCAGCGGCCTGAACCCCGGAGGCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS CAA 90 bp | GTGATGGGCCGGCCTCCGGGGTTCAGGCCGCTGAACTGCCCATACTaGCCCTTATTCTTATCAGCGGGCTTGAGGATCTGGAAGGAACAC | + |
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Preference number: 6 (lower is better) Translates to: VMGRPPGFRPLNCPY*PLFLSAGLRIWKEH Trigger: GTGTTCCTTCCAGATCCTCAAGCCCGCTGATAAGAATAAGGGCAAGTATGGGCAGTTCAGCGGCCTGAACCCCGGAGGCCGGCCCATCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS GCA 72 bp | TCAGGCACGTCTGTGGGCCGCATAATACGCCTAATCTaGTCCATGGATTGCAAGTCTGGAGACAGGCCCCCG | + |
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Preference number: 6 (lower is better) Translates to: SGTSVGRIIRLI*SMDCKSGDRPP Trigger: CGGGGGCCTGTCTCCAGACTTGCAATCCATGGAGCAGATTAGGCGTATTATGCGGCCCACAGACGTGCCTGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS CCA 72 bp | ATCTTGAGGGGCGCCTCAAGCTCCAGAAGAATGGGCTaGCTCAGGAAAATCTCCCGGGATTTGAGGCACAGA | + |
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Preference number: 6 (lower is better) Translates to: ILRGASSSRRMG*LRKISRDLRHR Trigger: TCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGAGGCGCCCCTCAAGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS CAA 90 bp | TCAAGCTCCAGAAGAATGGGCTGGCTCAGGAAAATCTCCCGGGATTaGAGGCACAGACCACGGATCTCGTTCTCTGTCAGCTGCACGTTC | + |
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Preference number: 6 (lower is better) Translates to: SSSRRMGWLRKISRD*RHRPRISFSVSCTF Trigger: GAACGTGCAGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCTGGAGCTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS TCA 72 bp | GAAGAATGGGCTGGCTCAGGAAAATCTCCCGGGATTTaGGGCACAGACCACGGATCTCGTTCTCTGTCAGCT | + |
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Preference number: 6 (lower is better) Translates to: EEWAGSGKSPGI*GTDHGSRSLSA Trigger: AGCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS CAA 72 bp | AGAAGAATGGGCTGGCTCAGGAAAATCTCCCGGGATTaGAGGCACAGACCACGGATCTCGTTCTCTGTCAGC | + |
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Preference number: 6 (lower is better) Translates to: RRMGWLRKISRD*RHRPRISFSVS Trigger: GCTGACAGAGAACGAGATCCGTGGTCTGTGCCTCAAATCCCGGGAGATTTTCCTGAGCCAGCCCATTCTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS CAA 72 bp | AACTGCCCATACTTGCCCTTATTCTTATCAGCGGGCTaGAGGATCTGGAAGGAACACATGAGGGTCTCATCC | + |
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Preference number: 6 (lower is better) Translates to: NCPYLPLFLSAG*RIWKEHMRVSS Trigger: GGATGAGACCCTCATGTGTTCCTTCCAGATCCTCAAGCCCGCTGATAAGAATAAGGGCAAGTATGGGCAGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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| CDS CCA 72 bp | AGTTGGGAGCTGAGAAGAGTGTCACCAACTGTCTCTTaGCAAAGAACTCATAGCCATCTTCTACAACCTGAT | + |
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Preference number: 6 (lower is better) Translates to: SWELRRVSPTVS*QRTHSHLLQPD Trigger: ATCAGGTTGTAGAAGATGGCTATGAGTTCTTTGCCAAGAGACAGTTGGTGACACTCTTCTCAGCTCCCAACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046094.6 |
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