Pregenerated sensors for PPM1N (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030402Ensembl transcript IDs: ENSMUST00000032560.6
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTCATGAGACTGGTGAGGGAGAAGCAGAAGAGGAAACAAGGAGTTaGAGTTCCTCCTCGGCTGGCCTGCCTTCCCCTGGCTCTCCTCGT | + |
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Preference number: 1 (lower is better) Translates to: PHETGEGEAEEETRS*SSSSAGLPSPGSPR Trigger: ACGAGGAGAGCCAGGGGAAGGCAGGCCAGCCGAGGAGGAACTTCAACTCCTTGTTTCCTCTTCTGCTTCTCCCTCACCAGTCTCATGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| 3UTR-3UTR TCA 90 bp | GTTTTCTGCTGTTGGGAGATGGCGGAATTCCCCCTCATGAGACTGGTGAGGGAGGTGCATATGGTCCCCTaGGGATGGCCGCTGTCAGGC | + |
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Preference number: 2 (lower is better) Translates to: VFCCWEMAEFPLMRLVREVHMVP*GWPLSG Trigger: GCCTGACAGCGGCCATCCTCAGGGGACCATATGCAC...CTCCCTCACCAGTCTCATGAGGGGGAATTCCGCCATCTCCCAACAGCAGAAAAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| 3UTR-3UTR GCA 90 bp | CTGCTGTTGGGAGATGGCGGAATTCCCCCTCATGAGACTGGTGAGGGAGAAGCAATTTCCCCTGAGATGTaGATATGGTCCCCTGAGGAT | + |
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Preference number: 2 (lower is better) Translates to: LLLGDGGIPPHETGEGEAISPEM*IWSPED Trigger: ATCCTCAGGGGACCATATGCACATCTCAGGGGAAAT...TGCTTCTCCCTCACCAGTCTCATGAGGGGGAATTCCGCCATCTCCCAACAGCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| 3UTR GCA 72 bp | TCTCCTCGTAGGGAAGCACAGATTTCCCCTGAGATGTaGATATGGTCCCCTGAGGATGGCCGCTGTCAGGCC | + |
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Preference number: 3 (lower is better) Translates to: SPRREAQISPEM*IWSPEDGRCQA Trigger: GGCCTGACAGCGGCCATCCTCAGGGGACCATATGCACATCTCAGGGGAAATCTGTGCTTCCCTACGAGGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR GCA 90 bp | CCTCGGCTGGCCTGCCTTCCCCTGGCTCTCCTCGTAGGGAAGCACAGATTTCCCAGTGCGCGTCCTCCATaGGTGCGCGCCAGCCCTGAA | + |
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Preference number: 4 (lower is better) Translates to: PRLACLPLALLVGKHRFPSARPP*VRASPE Trigger: TTCAGGGCTGGCGCGCACGCATGGAGGACGCGCACT...GGGAAATCTGTGCTTCCCTACGAGGAGAGCCAGGGGAAGGCAGGCCAGCCGAGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR CCA 90 bp | TCCTCGGCTGGCCTGCCTTCCCCTGGCTCTCCTCGTAGGGAAGCACAGATTTCCGTGCCACCGGCGTCGTaGATGCGCTCGCGTTCCCGA | + |
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Preference number: 4 (lower is better) Translates to: SSAGLPSPGSPRREAQISVPPAS*MRSRSR Trigger: TCGGGAACGCGAGCGCATCCACGACGCCGGTGGCAC...GGAAATCTGTGCTTCCCTACGAGGAGAGCCAGGGGAAGGCAGGCCAGCCGAGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR CCA 90 bp | CCTCGGCTGGCCTGCCTTCCCCTGGCTCTCCTCGTAGGGAAGCACAGATTTCCCCCTCCTCACAAGGCCTaGGGGCCCCAGGGAAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: PRLACLPLALLVGKHRFPPPHKA*GPQGSR Trigger: TCTGCTTCCCTGGGGCCCCCAGGCCTTGTGAGGAGG...GGGAAATCTGTGCTTCCCTACGAGGAGAGCCAGGGGAAGGCAGGCCAGCCGAGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR TCA 90 bp | GTTTTCTGCTGTTGGGAGATGGCGGAATTCCCCCTCATGAGACTGGTGAGGGAGCGTGCGCGCCAGCCCTaGACGGCGCTCGCCCCGAAG | + |
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Preference number: 4 (lower is better) Translates to: VFCCWEMAEFPLMRLVRERARQP*TALAPK Trigger: CTTCGGGGCGAGCGCCGTTCAGGGCTGGCGCGCACG...CTCCCTCACCAGTCTCATGAGGGGGAATTCCGCCATCTCCCAACAGCAGAAAAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR GCA 90 bp | CCTCGGCTGGCCTGCCTTCCCCTGGCTCTCCTCGTAGGGAAGCACAGATTTCCCGACGATGGTCCTCGGTaGAGAAGGCCACAGAGCCCG | + |
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Preference number: 4 (lower is better) Translates to: PRLACLPLALLVGKHRFPDDGPR*RRPQSP Trigger: CGGGCTCTGTGGCCTTCTGCACCGAGGACCATCGTC...GGGAAATCTGTGCTTCCCTACGAGGAGAGCCAGGGGAAGGCAGGCCAGCCGAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR GCA 90 bp | GGAGATGGCGGAATTCCCCCTCATGAGACTGGTGAGGGAGAAGCAGAAGAGGAACCCCTGTGCAGCCTCTaGCAACACCGGGGCGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: GDGGIPPHETGEGEAEEEPLCSL*QHRGAA Trigger: GGCTGCGCCCCGGTGTTGGCAGAGGCTGCACAGGGG...TTCCTCTTCTGCTTCTCCCTCACCAGTCTCATGAGGGGGAATTCCGCCATCTCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR GCA 90 bp | GTTTTCTGCTGTTGGGAGATGGCGGAATTCCCCCTCATGAGACTGGTGAGGGAGCACCGGCGTCGTGGATaGGCTCGCGTTCCCGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: VFCCWEMAEFPLMRLVREHRRRG*ARVPEA Trigger: GGCCTCGGGAACGCGAGCGCATCCACGACGCCGGTG...CTCCCTCACCAGTCTCATGAGGGGGAATTCCGCCATCTCCCAACAGCAGAAAAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR GCA 90 bp | GTTTTCTGCTGTTGGGAGATGGCGGAATTCCCCCTCATGAGACTGGTGAGGGAGGCCGGATGTGGCCGCTaGACCCCTGTGCAGCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: VFCCWEMAEFPLMRLVREAGCGR*TPVQPL Trigger: CAGAGGCTGCACAGGGGTGCAGCGGCCACATCCGGC...CTCCCTCACCAGTCTCATGAGGGGGAATTCCGCCATCTCCCAACAGCAGAAAAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR CCA 90 bp | GTTTTCTGCTGTTGGGAGATGGCGGAATTCCCCCTCATGAGACTGGTGAGGGAGCGTTCCCGAGGCCGGTaGGGACGATGGTCCTCGGTG | + |
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Preference number: 4 (lower is better) Translates to: VFCCWEMAEFPLMRLVRERSRGR*GRWSSV Trigger: CACCGAGGACCATCGTCCCCACCGGCCTCGGGAACG...CTCCCTCACCAGTCTCATGAGGGGGAATTCCGCCATCTCCCAACAGCAGAAAAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR GCA 90 bp | TCCTCGGCTGGCCTGCCTTCCCCTGGCTCTCCTCGTAGGGAAGCACAGATTTCCCATCTCCTTGCTAATTaGCTCCTCACAAGGCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: SSAGLPSPGSPRREAQISHLLAN*LLTRPG Trigger: CCCAGGCCTTGTGAGGAGGCAATTAGCAAGGAGATG...GGAAATCTGTGCTTCCCTACGAGGAGAGCCAGGGGAAGGCAGGCCAGCCGAGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR CCA 90 bp | GTTTTCTGCTGTTGGGAGATGGCGGAATTCCCCCTCATGAGACTGGTGAGGGAGAACTCGTCCTCATCCTaGCGTGCCAGCGCAGCCACC | + |
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Preference number: 4 (lower is better) Translates to: VFCCWEMAEFPLMRLVRENSSSS*RASAAT Trigger: GGTGGCTGCGCTGGCACGCCAGGATGAGGACGAGTT...CTCCCTCACCAGTCTCATGAGGGGGAATTCCGCCATCTCCCAACAGCAGAAAAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR GCA 90 bp | GTTTTCTGCTGTTGGGAGATGGCGGAATTCCCCCTCATGAGACTGGTGAGGGAGCAGAGAGCGCTCAGCTaGGCGTCTGCTTGGAGGAAG | + |
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Preference number: 4 (lower is better) Translates to: VFCCWEMAEFPLMRLVREQRALS*ASAWRK Trigger: CTTCCTCCAAGCAGACGCGCAGCTGAGCGCTCTCTG...CTCCCTCACCAGTCTCATGAGGGGGAATTCCGCCATCTCCCAACAGCAGAAAAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR TCA 90 bp | GGAGATGGCGGAATTCCCCCTCATGAGACTGGTGAGGGAGAAGCAGAAGAGGAAAGGCCTGGAGGTTCCTaGGCAGAGGCATACAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: GDGGIPPHETGEGEAEEERPGGS*AEAYSS Trigger: TGAGCTGTATGCCTCTGCTCAGGAACCTCCAGGCCT...TTCCTCTTCTGCTTCTCCCTCACCAGTCTCATGAGGGGGAATTCCGCCATCTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR TCA 90 bp | CTGTTGGGAGATGGCGGAATTCCCCCTCATGAGACTGGTGAGGGAGAAGCAGAATCCTGGGATGTCCTCTaGGGCCAGGGTCCTGAAAAC | + |
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Preference number: 4 (lower is better) Translates to: LLGDGGIPPHETGEGEAESWDVL*GQGPEN Trigger: GTTTTCAGGACCCTGGCCTCAGAGGACATCCCAGGA...TTCTGCTTCTCCCTCACCAGTCTCATGAGGGGGAATTCCGCCATCTCCCAACAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR TCA 90 bp | GTTTTCTGCTGTTGGGAGATGGCGGAATTCCCCCTCATGAGACTGGTGAGGGAGAGTAAGCTTCAGCAATaGCAGCGGCCTTGCTGTGTA | + |
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Preference number: 4 (lower is better) Translates to: VFCCWEMAEFPLMRLVRESKLQQ*QRPCCV Trigger: TACACAGCAAGGCCGCTGTCATTGCTGAAGCTTACT...CTCCCTCACCAGTCTCATGAGGGGGAATTCCGCCATCTCCCAACAGCAGAAAAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR GCA 90 bp | GGAGATGGCGGAATTCCCCCTCATGAGACTGGTGAGGGAGAAGCAGAAGAGGAAGGAAGCAGACCACCATaGAGGTCATATTGTCCAGAC | + |
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Preference number: 4 (lower is better) Translates to: GDGGIPPHETGEGEAEEEGSRPP*RSYCPD Trigger: GTCTGGACAATATGACCTGCATGGTGGTCTGCTTCC...TTCCTCTTCTGCTTCTCCCTCACCAGTCTCATGAGGGGGAATTCCGCCATCTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR GCA 90 bp | GGAATTCCCCCTCATGAGACTGGTGAGGGAGAAGCAGAAGAGGAAACAAGGAGTCATGTGTCCAACAGCTaGGCACAGAGTAGCTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: GIPPHETGEGEAEEETRSHVSNS*AQSSSR Trigger: TCTGGAGCTACTCTGTGCGCAGCTGTTGGACACATG...ACTCCTTGTTTCCTCTTCTGCTTCTCCCTCACCAGTCTCATGAGGGGGAATTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS TCA 90 bp | GCCAGCCGAGCGCAGTGCGCGTCCTCCATGCGTGCGCGCCAGCCCTaGACGGCGCTCGCCCCGAAGCGCAGGCCGGATGTGGCCGCTGCA | + |
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Preference number: 5 (lower is better) Translates to: ASRAQCASSMRARQP*TALAPKRRPDVAAA Trigger: TGCAGCGGCCACATCCGGCCTGCGCTTCGGGGCGAGCGCCGTTCAGGGCTGGCGCGCACGCATGGAGGACGCGCACTGCGCTCGGCTGGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS GCA 90 bp | CAGCCCGGGCAAAGCCAGCCGAGCGCAGTGCGCGTCCTCCATGCGTaGGCGCCAGCCCTGAACGGCGCTCGCCCCGAAGCGCAGGCCGGA | + |
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Preference number: 5 (lower is better) Translates to: QPGQSQPSAVRVLHA*APALNGARPEAQAG Trigger: TCCGGCCTGCGCTTCGGGGCGAGCGCCGTTCAGGGCTGGCGCGCACGCATGGAGGACGCGCACTGCGCTCGGCTGGCTTTGCCCGGGCTG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS GCA 90 bp | CTCGCGACACGGCCAGGGACCCCTCCACGCGCCGTCGACGGACTGTaGCACCGGCGTCGTGGATGCGCTCGCGTTCCCGAGGCCGGTGGG | + |
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Preference number: 5 (lower is better) Translates to: LATRPGTPPRAVDGL*HRRRGCARVPEAGG Trigger: CCCACCGGCCTCGGGAACGCGAGCGCATCCACGACGCCGGTGGCACAGTCCGTCGACGGCGCGTGGAGGGGTCCCTGGCCGTGTCGCGAG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS GCA 90 bp | ATGGCAGCCCGGGCAAAGCCAGCCGAGCGCAGTGCGCGTCCTCCATaGGTGCGCGCCAGCCCTGAACGGCGCTCGCCCCGAAGCGCAGGC | + |
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Preference number: 5 (lower is better) Translates to: MAARAKPAERSARPP*VRASPERRSPRSAG Trigger: GCCTGCGCTTCGGGGCGAGCGCCGTTCAGGGCTGGCGCGCACGCATGGAGGACGCGCACTGCGCTCGGCTGGCTTTGCCCGGGCTGCCAT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS GCA 90 bp | ACCCCTCCACGCGCCGTCGACGGACTGTGCCACCGGCGTCGTGGATaGGCTCGCGTTCCCGAGGCCGGTGGGGACGATGGTCCTCGGTGC | + |
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Preference number: 5 (lower is better) Translates to: TPPRAVDGLCHRRRG*ARVPEAGGDDGPRC Trigger: GCACCGAGGACCATCGTCCCCACCGGCCTCGGGAACGCGAGCGCATCCACGACGCCGGTGGCACAGTCCGTCGACGGCGCGTGGAGGGGT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS CCA 90 bp | AGGGACCCCTCCACGCGCCGTCGACGGACTGTGCCACCGGCGTCGTaGATGCGCTCGCGTTCCCGAGGCCGGTGGGGACGATGGTCCTCG | + |
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Preference number: 5 (lower is better) Translates to: RDPSTRRRRTVPPAS*MRSRSRGRWGRWSS Trigger: CGAGGACCATCGTCCCCACCGGCCTCGGGAACGCGAGCGCATCCACGACGCCGGTGGCACAGTCCGTCGACGGCGCGTGGAGGGGTCCCT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS GCA 90 bp | GGATGCGCTCGCGTTCCCGAGGCCGGTGGGGACGATGGTCCTCGGTaGAGAAGGCCACAGAGCCCGAGCGACTCAGAAGCGCGCGCGAGT | + |
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Preference number: 5 (lower is better) Translates to: GCARVPEAGGDDGPR*RRPQSPSDSEARAS Trigger: ACTCGCGCGCGCTTCTGAGTCGCTCGGGCTCTGTGGCCTTCTGCACCGAGGACCATCGTCCCCACCGGCCTCGGGAACGCGAGCGCATCC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS CCA 90 bp | CCGGCGTCGTGGATGCGCTCGCGTTCCCGAGGCCGGTGGGGACGATaGTCCTCGGTGCAGAAGGCCACAGAGCCCGAGCGACTCAGAAGC | + |
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Preference number: 5 (lower is better) Translates to: PASWMRSRSRGRWGR*SSVQKATEPERLRS Trigger: GCTTCTGAGTCGCTCGGGCTCTGTGGCCTTCTGCACCGAGGACCATCGTCCCCACCGGCCTCGGGAACGCGAGCGCATCCACGACGCCGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS CCA 90 bp | ACTGTGCCACCGGCGTCGTGGATGCGCTCGCGTTCCCGAGGCCGGTaGGGACGATGGTCCTCGGTGCAGAAGGCCACAGAGCCCGAGCGA | + |
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Preference number: 5 (lower is better) Translates to: TVPPASWMRSRSRGR*GRWSSVQKATEPER Trigger: TCGCTCGGGCTCTGTGGCCTTCTGCACCGAGGACCATCGTCCCCACCGGCCTCGGGAACGCGAGCGCATCCACGACGCCGGTGGCACAGT 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS TCA 90 bp | CCAGGCACGCTGCACTCCTCCTCCACCTCTTGCTCCACCACCTGCTaGGCTCGAGCGGCCCATCCGAGTCGCTCCAGCAGGCGGACAAAG | + |
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Preference number: 5 (lower is better) Translates to: PGTLHSSSTSCSTTC*ARAAHPSRSSRRTK Trigger: CTTTGTCCGCCTGCTGGAGCGACTCGGATGGGCCGCTCGAGCTCAGCAGGTGGTGGAGCAAGAGGTGGAGGAGGAGTGCAGCGTGCCTGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS GCA 90 bp | AACACCGGGGCGCAGCCAGGAGACTCCCAGACGCACCAGGCACGCTaGACTCCTCCTCCACCTCTTGCTCCACCACCTGCTGAGCTCGAG | + |
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Preference number: 5 (lower is better) Translates to: NTGAQPGDSQTHQAR*TPPPPLAPPPAELE Trigger: CTCGAGCTCAGCAGGTGGTGGAGCAAGAGGTGGAGGAGGAGTGCAGCGTGCCTGGTGCGTCTGGGAGTCTCCTGGCTGCGCCCCGGTGTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR CAA 90 bp | CCTCGGCTGGCCTGCCTTCCCCTGGCTCTCCTCGTAGGGAAGCACAGATTTCCCCTCCTCCTCCACCTCTaGCTCCACCACCTGCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: PRLACLPLALLVGKHRFPLLLHL*LHHLLS Trigger: GCTCAGCAGGTGGTGGAGCAAGAGGTGGAGGAGGAG...GGGAAATCTGTGCTTCCCTACGAGGAGAGCCAGGGGAAGGCAGGCCAGCCGAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR CAA 90 bp | CCTCGGCTGGCCTGCCTTCCCCTGGCTCTCCTCGTAGGGAAGCACAGATTTCCCTCACCACTCCTCCTCTaGACATTCCCCTGGGGTCTG | + |
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Preference number: 5 (lower is better) Translates to: PRLACLPLALLVGKHRFPSPLLL*TFPWGL Trigger: CAGACCCCAGGGGAATGTCAAGAGGAGGAGTGGTGA...GGGAAATCTGTGCTTCCCTACGAGGAGAGCCAGGGGAAGGCAGGCCAGCCGAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR CAA 90 bp | CCTCGGCTGGCCTGCCTTCCCCTGGCTCTCCTCGTAGGGAAGCACAGATTTCCCACCATGCAGGTCATATaGTCCAGACTTCCCTTGCAC | + |
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Preference number: 5 (lower is better) Translates to: PRLACLPLALLVGKHRFPTMQVI*SRLPLH Trigger: GTGCAAGGGAAGTCTGGACAATATGACCTGCATGGT...GGGAAATCTGTGCTTCCCTACGAGGAGAGCCAGGGGAAGGCAGGCCAGCCGAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS GCA 90 bp | GTCATATTGTCCAGACTTCCCTTGCACAGACATGTGTCCAACAGCTaGGCACAGAGTAGCTCCAGATCCAGGCCCAGACGCAGGCGCGAC | + |
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Preference number: 5 (lower is better) Translates to: VILSRLPLHRHVSNS*AQSSSRSRPRRRRD Trigger: GTCGCGCCTGCGTCTGGGCCTGGATCTGGAGCTACTCTGTGCGCAGCTGTTGGACACATGTCTGTGCAAGGGAAGTCTGGACAATATGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS GCA 90 bp | TTGCCTCCTCACAAGGCCTGGGGGCCCCAGGGAAGCAGACCACCATaGAGGTCATATTGTCCAGACTTCCCTTGCACAGACATGTGTCCA | + |
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Preference number: 5 (lower is better) Translates to: LPPHKAWGPQGSRPP*RSYCPDFPCTDMCP Trigger: TGGACACATGTCTGTGCAAGGGAAGTCTGGACAATATGACCTGCATGGTGGTCTGCTTCCCTGGGGCCCCCAGGCCTTGTGAGGAGGCAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS TCA 90 bp | TCTGAGGCCAGGGTCCTGAAAACCGTGTTTAGGCCTGGAGGTTCCTaGGCAGAGGCATACAGCTCAGCAACTTTGTGGCTCAGGGCTTCG | + |
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Preference number: 5 (lower is better) Translates to: SEARVLKTVFRPGGS*AEAYSSATLWLRAS Trigger: CGAAGCCCTGAGCCACAAAGTTGCTGAGCTGTATGCCTCTGCTCAGGAACCTCCAGGCCTAAACACGGTTTTCAGGACCCTGGCCTCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR CAA 90 bp | CTGCTGTTGGGAGATGGCGGAATTCCCCCTCATGAGACTGGTGAGGGAGAAGCATCTAAAGCCATCTCCTaGCTAATTGCCTCCTCACAA | + |
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Preference number: 5 (lower is better) Translates to: LLLGDGGIPPHETGEGEASKAIS*LIASSQ Trigger: TTGTGAGGAGGCAATTAGCAAGGAGATGGCTTTAGA...TGCTTCTCCCTCACCAGTCTCATGAGGGGGAATTCCGCCATCTCCCAACAGCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS-3UTR CAA 90 bp | GGAATTCCCCCTCATGAGACTGGTGAGGGAGAAGCAGAAGAGGAAACAAGGAGTTACAGCTCAGCAACTTaGTGGCTCAGGGCTTCGTCT | + |
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Preference number: 5 (lower is better) Translates to: GIPPHETGEGEAEEETRSYSSAT*WLRASS Trigger: AGACGAAGCCCTGAGCCACAAAGTTGCTGAGCTGTA...ACTCCTTGTTTCCTCTTCTGCTTCTCCCTCACCAGTCTCATGAGGGGGAATTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS TCA 72 bp | GCGCAGTGCGCGTCCTCCATGCGTGCGCGCCAGCCCTaGACGGCGCTCGCCCCGAAGCGCAGGCCGGATGTG | + |
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Preference number: 6 (lower is better) Translates to: AQCASSMRARQP*TALAPKRRPDV Trigger: CACATCCGGCCTGCGCTTCGGGGCGAGCGCCGTTCAGGGCTGGCGCGCACGCATGGAGGACGCGCACTGCGC 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS GCA 72 bp | CGGGCAAAGCCAGCCGAGCGCAGTGCGCGTCCTCCATaGGTGCGCGCCAGCCCTGAACGGCGCTCGCCCCGA | + |
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Preference number: 6 (lower is better) Translates to: RAKPAERSARPP*VRASPERRSPR Trigger: TCGGGGCGAGCGCCGTTCAGGGCTGGCGCGCACGCATGGAGGACGCGCACTGCGCTCGGCTGGCTTTGCCCG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS GCA 72 bp | CGGCCAGGGACCCCTCCACGCGCCGTCGACGGACTGTaGCACCGGCGTCGTGGATGCGCTCGCGTTCCCGAG | + |
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Preference number: 6 (lower is better) Translates to: RPGTPPRAVDGL*HRRRGCARVPE Trigger: CTCGGGAACGCGAGCGCATCCACGACGCCGGTGGCACAGTCCGTCGACGGCGCGTGGAGGGGTCCCTGGCCG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS GCA 72 bp | CAAAGCCAGCCGAGCGCAGTGCGCGTCCTCCATGCGTaGGCGCCAGCCCTGAACGGCGCTCGCCCCGAAGCG | + |
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Preference number: 6 (lower is better) Translates to: QSQPSAVRVLHA*APALNGARPEA Trigger: CGCTTCGGGGCGAGCGCCGTTCAGGGCTGGCGCGCACGCATGGAGGACGCGCACTGCGCTCGGCTGGCTTTG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS GCA 72 bp | CGCGCCGTCGACGGACTGTGCCACCGGCGTCGTGGATaGGCTCGCGTTCCCGAGGCCGGTGGGGACGATGGT | + |
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Preference number: 6 (lower is better) Translates to: RAVDGLCHRRRG*ARVPEAGGDDG Trigger: ACCATCGTCCCCACCGGCCTCGGGAACGCGAGCGCATCCACGACGCCGGTGGCACAGTCCGTCGACGGCGCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS CCA 72 bp | TCCACGCGCCGTCGACGGACTGTGCCACCGGCGTCGTaGATGCGCTCGCGTTCCCGAGGCCGGTGGGGACGA | + |
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Preference number: 6 (lower is better) Translates to: STRRRRTVPPAS*MRSRSRGRWGR Trigger: TCGTCCCCACCGGCCTCGGGAACGCGAGCGCATCCACGACGCCGGTGGCACAGTCCGTCGACGGCGCGTGGA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS CAA 72 bp | GCCGCGGGGCCAGAGAGCGCTCAGCTGCGCGTCTGCTaGGAGGAAGGCGCTACGAAGAGCCTGGCGCACGCC | + |
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Preference number: 6 (lower is better) Translates to: AAGPESAQLRVC*EEGATKSLAHA Trigger: GGCGTGCGCCAGGCTCTTCGTAGCGCCTTCCTCCAAGCAGACGCGCAGCTGAGCGCTCTCTGGCCCCGCGGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS GCA 72 bp | AGGCCGGATGTGGCCGCTGCACCCCTGTGCAGCCTCTaGCAACACCGGGGCGCAGCCAGGAGACTCCCAGAC | + |
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Preference number: 6 (lower is better) Translates to: RPDVAAAPLCSL*QHRGAARRLPD Trigger: GTCTGGGAGTCTCCTGGCTGCGCCCCGGTGTTGGCAGAGGCTGCACAGGGGTGCAGCGGCCACATCCGGCCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS CCA 72 bp | CCGGCGTCGTGGATGCGCTCGCGTTCCCGAGGCCGGTaGGGACGATGGTCCTCGGTGCAGAAGGCCACAGAG | + |
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Preference number: 6 (lower is better) Translates to: PASWMRSRSRGR*GRWSSVQKATE Trigger: CTCTGTGGCCTTCTGCACCGAGGACCATCGTCCCCACCGGCCTCGGGAACGCGAGCGCATCCACGACGCCGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS CCA 72 bp | TGGATGCGCTCGCGTTCCCGAGGCCGGTGGGGACGATaGTCCTCGGTGCAGAAGGCCACAGAGCCCGAGCGA | + |
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Preference number: 6 (lower is better) Translates to: WMRSRSRGRWGR*SSVQKATEPER Trigger: TCGCTCGGGCTCTGTGGCCTTCTGCACCGAGGACCATCGTCCCCACCGGCCTCGGGAACGCGAGCGCATCCA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS CAA 90 bp | GAGACTCCCAGACGCACCAGGCACGCTGCACTCCTCCTCCACCTCTaGCTCCACCACCTGCTGAGCTCGAGCGGCCCATCCGAGTCGCTC | + |
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Preference number: 6 (lower is better) Translates to: ETPRRTRHAALLLHL*LHHLLSSSGPSESL Trigger: GAGCGACTCGGATGGGCCGCTCGAGCTCAGCAGGTGGTGGAGCAAGAGGTGGAGGAGGAGTGCAGCGTGCCTGGTGCGTCTGGGAGTCTC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS CCA 72 bp | CCATCAGAAGCCAGGAGAACGAACTCGTCCTCATCCTaGCGTGCCAGCGCAGCCACCTCGGGCTCAGCGGAC | + |
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Preference number: 6 (lower is better) Translates to: PSEARRTNSSSS*RASAATSGSAD Trigger: GTCCGCTGAGCCCGAGGTGGCTGCGCTGGCACGCCAGGATGAGGACGAGTTCGTTCTCCTGGCTTCTGATGG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS GCA 72 bp | CACAAGGCCTGGGGGCCCCAGGGAAGCAGACCACCATaGAGGTCATATTGTCCAGACTTCCCTTGCACAGAC | + |
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Preference number: 6 (lower is better) Translates to: HKAWGPQGSRPP*RSYCPDFPCTD Trigger: GTCTGTGCAAGGGAAGTCTGGACAATATGACCTGCATGGTGGTCTGCTTCCCTGGGGCCCCCAGGCCTTGTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS CAA 72 bp | GGGGCCCCAGGGAAGCAGACCACCATGCAGGTCATATaGTCCAGACTTCCCTTGCACAGACATGTGTCCAAC | + |
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Preference number: 6 (lower is better) Translates to: GAPGKQTTMQVI*SRLPLHRHVSN Trigger: GTTGGACACATGTCTGTGCAAGGGAAGTCTGGACAATATGACCTGCATGGTGGTCTGCTTCCCTGGGGCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS CAA 72 bp | ACTTTGTGGCTCAGGGCTTCGTCTAAAGCCATCTCCTaGCTAATTGCCTCCTCACAAGGCCTGGGGGCCCCA | + |
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Preference number: 6 (lower is better) Translates to: TLWLRASSKAIS*LIASSQGLGAP Trigger: TGGGGCCCCCAGGCCTTGTGAGGAGGCAATTAGCAAGGAGATGGCTTTAGACGAAGCCCTGAGCCACAAAGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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| CDS TCA 72 bp | AGGGTCCTGAAAACCGTGTTTAGGCCTGGAGGTTCCTaGGCAGAGGCATACAGCTCAGCAACTTTGTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: RVLKTVFRPGGS*AEAYSSATLWL Trigger: GAGCCACAAAGTTGCTGAGCTGTATGCCTCTGCTCAGGAACCTCCAGGCCTAAACACGGTTTTCAGGACCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032560.6 |
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