RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PPM1H (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034613

Ensembl transcript IDs: ENSMUST00000067918.12, ENSMUST00000161487.8, ENSMUST00000162969.2

Found 255 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ATGAGAACGAGGAAGCCGTGGTGGCTCACACCGAAATCCCAGAACTaGTGGGGCAGGGGCTGGGTGCTCATTCCAAGTTTGAGGATACCC +
Preference number: 1 (lower is better)
Translates to: MRTRKPWWLTPKSQN*WGRGWVLIPSLRIP
Trigger: GGGTATCCTCAAACTTGGAATGAGCACCCAGCCCCTGCCCCAGCAGTTCTGGGATTTCGGTGTGAGCCACCACGGCTTCCTCGTTCTCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR CCA 90 bp CAGCACGGGCATGTTTGTCAGGCCGGTTCTACTGGGCTGCTCTGCTaGCTTAGCTCTGCTGGCTTCTGCCCACAACACATCATTTCTCGG +
Preference number: 1 (lower is better)
Translates to: QHGHVCQAGSTGLLC*LSSAGFCPQHIISR
Trigger: CCGAGAAATGATGTGTTGTGGGCAGAAGCCAGCAGAGCTAAGCCAGCAGAGCAGCCCAGTAGAACCGGCCTGACAAACATGCCCGTGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR GCA 90 bp AGTTCCAGTGCACACACACACACACTCACACACATGACGCCACATTaGCACATAGCACCCGAAGATTGCCCAGAGAGGTGGGCTGTGGTC +
Preference number: 1 (lower is better)
Translates to: SSSAHTHTLTHMTPH*HIAPEDCPERWAVV
Trigger: GACCACAGCCCACCTCTCTGGGCAATCTTCGGGTGCTATGTGGCAATGTGGCGTCATGTGTGTGAGTGTGTGTGTGTGTGCACTGGAACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR GCA 90 bp ATCCAGCACGGGCATGTTTGTCAGGCCGGTTCTACTGGGCTGCTCTaGTGGCTTAGCTCTGCTGGCTTCTGCCCACAACACATCATTTCT +
Preference number: 1 (lower is better)
Translates to: IQHGHVCQAGSTGLL*WLSSAGFCPQHIIS
Trigger: AGAAATGATGTGTTGTGGGCAGAAGCCAGCAGAGCTAAGCCAGCAGAGCAGCCCAGTAGAACCGGCCTGACAAACATGCCCGTGCTGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR CCA 90 bp TGTGCCCATGTGCCCATGTGCGTGCCACTGAGGCATGCACACCAGTaGATGCATAGTAGGAAGGGGGTCTCAGCTCTTAAGTTTCTACAC +
Preference number: 1 (lower is better)
Translates to: CAHVPMCVPLRHAHQ*MHSRKGVSALKFLH
Trigger: GTGTAGAAACTTAAGAGCTGAGACCCCCTTCCTACTATGCATCCACTGGTGTGCATGCCTCAGTGGCACGCACATGGGCACATGGGCACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 90 bp GTGGATGGCTTACCAGCCTGGAAGAAGTGCCCCTCCCTTCTCCCCTaGGAAGGAATTCTCGTAAACACAAGAGCTGGGATTGCATCTTGG +
Preference number: 1 (lower is better)
Translates to: VDGLPAWKKCPSLLP*EGILVNTRAGIASW
Trigger: CCAAGATGCAATCCCAGCTCTTGTGTTTACGAGAATTCCTTCCCAGGGGAGAAGGGAGGGGCACTTCTTCCAGGCTGGTAAGCCATCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR GCA 90 bp CCAAACCCAGTTGATGAAGTGCTAGAGATGGCACCCAGGGCCTTGTaGATGATGGGTAAGCACTCTAGCTCAGCCCCTGTTGGTAACTTT +
Preference number: 1 (lower is better)
Translates to: PNPVDEVLEMAPRAL*MMGKHSSSAPVGNF
Trigger: AAAGTTACCAACAGGGGCTGAGCTAGAGTGCTTACCCATCATGCACAAGGCCCTGGGTGCCATCTCTAGCACTTCATCAACTGGGTTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR GCA 90 bp CTGTGTAGACCAGCCTGGCCTCGAACTCAGAGAACCACCTACCCCTaGCTCTCAAATGCTGGCATTAAAGTCACATACTACCATTCCTGG +
Preference number: 1 (lower is better)
Translates to: LCRPAWPRTQRTTYP*LSNAGIKVTYYHSW
Trigger: CCAGGAATGGTAGTATGTGACTTTAATGCCAGCATTTGAGAGGCAGGGGTAGGTGGTTCTCTGAGTTCGAGGCCAGGCTGGTCTACACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR CCA 90 bp GAAACACTAACTTCTTTGGCTTGTCCCAGTCAGACAGCTGCCTATTaGTCCAGCCTAACTGTCACCTTCCTTCCCAGCCACAAAGGGCAG +
Preference number: 1 (lower is better)
Translates to: ETLTSLACPSQTAAY*SSLTVTFLPSHKGQ
Trigger: CTGCCCTTTGTGGCTGGGAAGGAAGGTGACAGTTAGGCTGGACCAATAGGCAGCTGTCTGACTGGGACAAGCCAAAGAAGTTAGTGTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 90 bp GCTGATCAATATGTGGGAGAACCTGTCAGCAGGACTAACCTGAAGTaGGAACATGAGAACGAGGAAGCCGTGGTGGCTCACACCGAAATC +
Preference number: 1 (lower is better)
Translates to: ADQYVGEPVSRTNLK*EHENEEAVVAHTEI
Trigger: GATTTCGGTGTGAGCCACCACGGCTTCCTCGTTCTCATGTTCCCACTTCAGGTTAGTCCTGCTGACAGGTTCTCCCACATATTGATCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR GCA 90 bp TTGTCACTTAGGAAGACGCTTCAGGGTTCACACTCTTCAGGGAAGTaGCAGGAGTCAGAAGAGCAGATGCAGGCTGAGCGAAGAAGAGAT +
Preference number: 1 (lower is better)
Translates to: LSLRKTLQGSHSSGK*QESEEQMQAERRRD
Trigger: ATCTCTTCTTCGCTCAGCCTGCATCTGCTCTTCTGACTCCTGGCACTTCCCTGAAGAGTGTGAACCCTGAAGCGTCTTCCTAAGTGACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 90 bp GGGACTAGCCAGATGGGTCTAGTCTCTGATCTGGACACTGTCCAGTaGCAATTTGGAAAGTTCCATTGGAGGGGAATGAGAACGATAGGA +
Preference number: 1 (lower is better)
Translates to: GTSQMGLVSDLDTVQ*QFGKFHWRGMRTIG
Trigger: TCCTATCGTTCTCATTCCCCTCCAATGGAACTTTCCAAATTGCCACTGGACAGTGTCCAGATCAGAGACTAGACCCATCTGGCTAGTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR GCA 90 bp TGGATGCATAGTAGGAAGGGGGTCTCAGCTCTTAAGTTTCTACACTaGGATTCCCTTGAGGAATGGGGGAACATCACAATGACCAACTGC +
Preference number: 1 (lower is better)
Translates to: WMHSRKGVSALKFLH*DSLEEWGNITMTNC
Trigger: GCAGTTGGTCATTGTGATGTTCCCCCATTCCTCAAGGGAATCGCAGTGTAGAAACTTAAGAGCTGAGACCCCCTTCCTACTATGCATCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR GCA 90 bp ATCTACAATTCTAGGAATGTGGATGGCTTACCAGCCTGGAAGAAGTaGCCCTCCCTTCTCCCCTGGGAAGGAATTCTCGTAAACACAAGA +
Preference number: 1 (lower is better)
Translates to: IYNSRNVDGLPAWKK*PSLLPWEGILVNTR
Trigger: TCTTGTGTTTACGAGAATTCCTTCCCAGGGGAGAAGGGAGGGGCACTTCTTCCAGGCTGGTAAGCCATCCACATTCCTAGAATTGTAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR TCA 90 bp AGAGGTGGGCTGTGGTCTGCAGGCTGTAATACTTCTCTGTATTCATaGGCCCTGACATTCATAAGCTCCCAACACAAAATCCTGTCCTGT +
Preference number: 1 (lower is better)
Translates to: RGGLWSAGCNTSLYS*ALTFISSQHKILSC
Trigger: ACAGGACAGGATTTTGTGTTGGGAGCTTATGAATGTCAGGGCTCATGAATACAGAGAAGTATTACAGCCTGCAGACCACAGCCCACCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 90 bp TGTTTGGCTCTTATTCAGTGTCCAGACTTGTTACCAAAGAAGAAGTaGAAACCTAAGGGTCACCTGGAAGCAAAACCAGAGAGGCCTTTG +
Preference number: 1 (lower is better)
Translates to: CLALIQCPDLLPKKK*KPKGHLEAKPERPL
Trigger: CAAAGGCCTCTCTGGTTTTGCTTCCAGGTGACCCTTAGGTTTCCACTTCTTCTTTGGTAACAAGTCTGGACACTGAATAAGAGCCAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 90 bp ACCAGCAGGACTCCAGGTTTTAGGGTAATTGGAGTCTTTCAGATTTaGTTTGACAATGGAAGAATTGGGAGAATGTTGCCACTGGCACCT +
Preference number: 1 (lower is better)
Translates to: TSRTPGFRVIGVFQI*FDNGRIGRMLPLAP
Trigger: AGGTGCCAGTGGCAACATTCTCCCAATTCTTCCATTGTCAAACCAAATCTGAAAGACTCCAATTACCCTAAAACCTGGAGTCCTGCTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 90 bp CCCTGCCTCTCAAATGCTGGCATTAAAGTCACATACTACCATTCCTaGCTCAGTCTTGACCATGTTTTCAAAGCTCTTAAAATGCTCCGA +
Preference number: 1 (lower is better)
Translates to: PCLSNAGIKVTYYHS*LSLDHVFKALKMLR
Trigger: TCGGAGCATTTTAAGAGCTTTGAAAACATGGTCAAGACTGAGCCAGGAATGGTAGTATGTGACTTTAATGCCAGCATTTGAGAGGCAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR CCA 90 bp GATTGCATCTTGGGGGAAATGACACCATTGGTTCCTTCCTTGGGTTaGAAATGTCTGAATTATACCAAGTTGTCAGAAAGCCGATATCCT +
Preference number: 1 (lower is better)
Translates to: DCILGEMTPLVPSLG*KCLNYTKLSESRYP
Trigger: AGGATATCGGCTTTCTGACAACTTGGTATAATTCAGACATTTCCAACCCAAGGAAGGAACCAATGGTGTCATTTCCCCCAAGATGCAATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 90 bp GTTTACAAAAGTCAATGTTTCACAATCACGAGGCATAAAGGTACGTaGTTCGAAAACCAATCTCCAGGCAGATTCTTCTCAGTTCACTAT +
Preference number: 1 (lower is better)
Translates to: VYKSQCFTITRHKGT*FENQSPGRFFSVHY
Trigger: ATAGTGAACTGAGAAGAATCTGCCTGGAGATTGGTTTTCGAACCACGTACCTTTATGCCTCGTGATTGTGAAACATTGACTTTTGTAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR TCA 90 bp GGTAATTTTTGGAAACCCAGATCACCATATACATATTCTTACAATTaGTCCTTAGTAGGCGCCTCCTGGGGTTTCCAAAGAAACAAAGAA +
Preference number: 1 (lower is better)
Translates to: GNFWKPRSPYTYSYN*SLVGASWGFQRNKE
Trigger: TTCTTTGTTTCTTTGGAAACCCCAGGAGGCGCCTACTAAGGATCAATTGTAAGAATATGTATATGGTGATCTGGGTTTCCAAAAATTACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 90 bp ATAGAAACCAAGAGAAATATAACACTCAGTAGCAGGCTTTGTGTTTaGCTCTTATTCAGTGTCCAGACTTGTTACCAAAGAAGAAGTGGA +
Preference number: 1 (lower is better)
Translates to: IETKRNITLSSRLCV*LLFSVQTCYQRRSG
Trigger: TCCACTTCTTCTTTGGTAACAAGTCTGGACACTGAATAAGAGCCAAACACAAAGCCTGCTACTGAGTGTTATATTTCTCTTGGTTTCTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR GCA 90 bp CCTGGCCTCGAACTCAGAGAACCACCTACCCCTGCCTCTCAAATGCTGGCATTACCGAAATCCCAGAACTaGTGGGGCAGGGGCTGGGTG +
Preference number: 2 (lower is better)
Translates to: PGLELREPPTPASQMLALPKSQN*WGRGWV
Trigger: CACCCAGCCCCTGCCCCAGCAGTTCTGGGATTTCGG...TAATGCCAGCATTTGAGAGGCAGGGGTAGGTGGTTCTCTGAGTTCGAGGCCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR-3UTR GCA 90 bp CCCAGCAGGTCCCTCCCGCACCTTTGTGTGGTGACTGTTGGTGTTAGAGGAACACTTCTCCCAGAGAGATaGTGGCAGCTTGTCGGGCTG +
Preference number: 2 (lower is better)
Translates to: PSRSLPHLCVVTVGVRGTLLPER*WQLVGL
Trigger: CAGCCCGACAAGCTGCCAGCATCTCTCTGGGAGAAG...TGTTCCTCTAACACCAACAGTCACCACACAAAGGTGCGGGAGGGACCTGCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR GCA 90 bp CCTGGCCTCGAACTCAGAGAACCACCTACCCCTGCCTCTCAAATGCTGGCATTAGCACCCAGGGCCTTGTaGATGATGGGTAAGCACTCT +
Preference number: 2 (lower is better)
Translates to: PGLELREPPTPASQMLALAPRAL*MMGKHS
Trigger: AGAGTGCTTACCCATCATGCACAAGGCCCTGGGTGC...TAATGCCAGCATTTGAGAGGCAGGGGTAGGTGGTTCTCTGAGTTCGAGGCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR-3UTR CCA 90 bp GAGGGAGCACCACCCATTCCAGAAATAAAACCCAGCCTCTCACAGCTAAACCTCCTCCCAGAGAGATGCTaGCAGCTTGTCGGGCTGAGG +
Preference number: 2 (lower is better)
Translates to: EGAPPIPEIKPSLSQLNLLPERC*QLVGLR
Trigger: CCTCAGCCCGACAAGCTGCCAGCATCTCTCTGGGAG...GAGGTTTAGCTGTGAGAGGCTGGGTTTTATTTCTGGAATGGGTGGTGCTCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CAA 90 bp CACACTCACACACATGACGCCACATTGCCACATAGCACCCGAAGATaGCCCAGAGAGGTGGGCTGTGGTCTGCAGGCTGTAATACTTCTC +
Preference number: 2 (lower is better)
Translates to: HTHTHDATLPHSTRR*PREVGCGLQAVILL
Trigger: GAGAAGTATTACAGCCTGCAGACCACAGCCCACCTCTCTGGGCAATCTTCGGGTGCTATGTGGCAATGTGGCGTCATGTGTGTGAGTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CAA 90 bp AAGTTCCAGTGCACACACACACACACTCACACACATGACGCCACATaGCCACATAGCACCCGAAGATTGCCCAGAGAGGTGGGCTGTGGT +
Preference number: 2 (lower is better)
Translates to: KFQCTHTHTHTHDAT*PHSTRRLPREVGCG
Trigger: ACCACAGCCCACCTCTCTGGGCAATCTTCGGGTGCTATGTGGCAATGTGGCGTCATGTGTGTGAGTGTGTGTGTGTGTGCACTGGAACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR TCA 90 bp ACAGAGTTAAACCCAAAGCACAGAGCAATATCAGTGCTGGGCAGATCTGCCATGGGCAGCTTGTCGGGCTaGGGAGGGGCTTTCACCAGT +
Preference number: 2 (lower is better)
Translates to: TELNPKHRAISVLGRSAMGSLSG*GGAFTS
Trigger: ACTGGTGAAAGCCCCTCCTCAGCCCGACAAGCTGCC...CATGGCAGATCTGCCCAGCACTGATATTGCTCTGTGCTTTGGGTTTAACTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR TCA 90 bp TCCTCTGAGGCTATTAGGGCAAGCAAGTCCAGCTGGAAGTCAGACAGGCATGATAGGCGTCTGGGGTGGTaGAGACTTCCTGAAGGAGAG +
Preference number: 2 (lower is better)
Translates to: SSEAIRASKSSWKSDRHDRRLGW*RLPEGE
Trigger: CTCTCCTTCAGGAAGTCTTCACCACCCCAGACGCCT...ATCATGCCTGTCTGACTTCCAGCTGGACTTGCTTGCCCTAATAGCCTCAGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR TCA 90 bp AGCTGCCCTGGAGGTACTGACTCACTGAAATTAGAATCTCATCACAGCATAACGCCATGTGCGTGCCACTaGGGCATGCACACCAGTGGA +
Preference number: 2 (lower is better)
Translates to: SCPGGTDSLKLESHHSITPCACH*GMHTSG
Trigger: TCCACTGGTGTGCATGCCTCAGTGGCACGCACATGG...CGTTATGCTGTGATGAGATTCTAATTTCAGTGAGTCAGTACCTCCAGGGCAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR TCA 90 bp GAAACTTTCCTGCCAGAGCTGCTTTCTTCTAGGGCTTCCAGTTTCCCAGGGGGCGATGACCTGAACTTCTaGCCTTCTTGCTTCCACATC +
Preference number: 2 (lower is better)
Translates to: ETFLPELLSSRASSFPGGDDLNF*PSCFHI
Trigger: GATGTGGAAGCAAGAAGGTCAGAAGTTCAGGTCATC...GCCCCCTGGGAAACTGGAAGCCCTAGAAGAAAGCAGCTCTGGCAGGAAAGTTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR-3UTR TCA 90 bp CCATCTAGGGGCATGATTTCCTTCAAGAAAGTGACTTTCAGGGGCGAGTGGTGGACCCTTGCACAAAGGTaGCAGGAAGAGAGTAGTCAC +
Preference number: 2 (lower is better)
Translates to: PSRGMISFKKVTFRGEWWTLAQR*QEESSH
Trigger: GTGACTACTCTCTTCCTGTCACCTTTGTGCAAGGGT...CCACCACTCGCCCCTGAAAGTCACTTTCTTGAAGGAAATCATGCCCCTAGATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR TCA 90 bp AAGCTCCCAACACAAAATCCTGTCCTGTGGCTGAAGTCTGCCCTACGACTCTATCGGGGGAGGGGGAGATaGGAACAAATCAGACACTTT +
Preference number: 2 (lower is better)
Translates to: KLPTQNPVLWLKSALRLYRGRGR*EQIRHF
Trigger: AAAGTGTCTGATTTGTTCTCATCTCCCCCTCCCCCG...ATAGAGTCGTAGGGCAGACTTCAGCCACAGGACAGGATTTTGTGTTGGGAGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR TCA 90 bp AACACTTTCTCAAATTTCCCATTTGTGTGTGACTTTGAGAACTGGGCGATGGTGCCAGGACACAGAAGGTaGGGGAGCACCACCCATTCC +
Preference number: 2 (lower is better)
Translates to: NTFSNFPFVCDFENWAMVPGHRR*GSTTHS
Trigger: GGAATGGGTGGTGCTCCCTCACCTTCTGTGTCCTGG...CACCATCGCCCAGTTCTCAAAGTCACACACAAATGGGAAATTTGAGAAAGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR TCA 90 bp ACAGAGTTAAACCCAAAGCACAGAGCAATATCAGTGCTGGGCAGATCTGCCATGGGTACAAGAACTTGCTaGGCTACGGCACTGGATGCT +
Preference number: 2 (lower is better)
Translates to: TELNPKHRAISVLGRSAMGTRTC*ATALDA
Trigger: AGCATCCAGTGCCGTAGCTCAGCAAGTTCTTGTACC...CATGGCAGATCTGCCCAGCACTGATATTGCTCTGTGCTTTGGGTTTAACTCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR GCA 90 bp TCCTCTGAGGCTATTAGGGCAAGCAAGTCCAGCTGGAAGTCAGACAGGCATGATCATCCCAGATACCCTTaGACAAAGGTGACAGGAAGA +
Preference number: 2 (lower is better)
Translates to: SSEAIRASKSSWKSDRHDHPRYP*TKVTGR
Trigger: TCTTCCTGTCACCTTTGTGCAAGGGTATCTGGGATG...ATCATGCCTGTCTGACTTCCAGCTGGACTTGCTTGCCCTAATAGCCTCAGAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR CCA 90 bp TCCTCTGAGGCTATTAGGGCAAGCAAGTCCAGCTGGAAGTCAGACAGGCATGATAAAATATGCATCACCTaGAATCCAGCCCAGGCACTC +
Preference number: 2 (lower is better)
Translates to: SSEAIRASKSSWKSDRHDKICIT*NPAQAL
Trigger: GAGTGCCTGGGCTGGATTCCAGGTGATGCATATTTT...ATCATGCCTGTCTGACTTCCAGCTGGACTTGCTTGCCCTAATAGCCTCAGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR CCA 90 bp TCCTCTGAGGCTATTAGGGCAAGCAAGTCCAGCTGGAAGTCAGACAGGCATGATACTCCCCATCTGGGCTaGGAAAAATATGCATCACCT +
Preference number: 2 (lower is better)
Translates to: SSEAIRASKSSWKSDRHDTPHLG*EKYASP
Trigger: AGGTGATGCATATTTTTCCCAGCCCAGATGGGGAGT...ATCATGCCTGTCTGACTTCCAGCTGGACTTGCTTGCCCTAATAGCCTCAGAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR CCA 90 bp GAAGAAGTGCCCCTCCCTTCTCCCCTGGGAAGGAATTCTCGTAAACACAAGAGCAGACAAACTGTCACCTaGGACATTGCTCTGGACAAA +
Preference number: 2 (lower is better)
Translates to: EEVPLPSPLGRNSRKHKSRQTVT*DIALDK
Trigger: TTTGTCCAGAGCAATGTCCCAGGTGACAGTTTGTCT...GCTCTTGTGTTTACGAGAATTCCTTCCCAGGGGAGAAGGGAGGGGCACTTCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR CCA 90 bp ACAGAGTTAAACCCAAAGCACAGAGCAATATCAGTGCTGGGCAGATCTGCCATGAAGGAGAGGCATCCATaGTCAGATGCCCAGTCTTCC +
Preference number: 2 (lower is better)
Translates to: TELNPKHRAISVLGRSAMKERHP*SDAQSS
Trigger: GGAAGACTGGGCATCTGACCATGGATGCCTCTCCTT...CATGGCAGATCTGCCCAGCACTGATATTGCTCTGTGCTTTGGGTTTAACTCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CAA 90 bp CCCCTGGGAAGGAATTCTCGTAAACACAAGAGCTGGGATTGCATCTaGGGGGAAATGACACCATTGGTTCCTTCCTTGGGTTGGAAATGT +
Preference number: 2 (lower is better)
Translates to: PLGRNSRKHKSWDCI*GEMTPLVPSLGWKC
Trigger: ACATTTCCAACCCAAGGAAGGAACCAATGGTGTCATTTCCCCCAAGATGCAATCCCAGCTCTTGTGTTTACGAGAATTCCTTCCCAGGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR TCA 90 bp AGCTGCCCTGGAGGTACTGACTCACTGAAATTAGAATCTCATCACAGCATAACGGTGGTGAAGACTTCCTaGAGGAGAGGCATCCATGGT +
Preference number: 2 (lower is better)
Translates to: SCPGGTDSLKLESHHSITVVKTS*RRGIHG
Trigger: ACCATGGATGCCTCTCCTTCAGGAAGTCTTCACCAC...CGTTATGCTGTGATGAGATTCTAATTTCAGTGAGTCAGTACCTCCAGGGCAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR TCA 90 bp AACACATCATTTCTCGGTGTAGTAGCTGAAACTTTCCTGCCAGAGCTGCTTTCTCCAGGGCCTTGTGCATaGTGGGTAAGCACTCTAGCT +
Preference number: 2 (lower is better)
Translates to: NTSFLGVVAETFLPELLSPGPCA*WVSTLA
Trigger: AGCTAGAGTGCTTACCCATCATGCACAAGGCCCTGG...AGAAAGCAGCTCTGGCAGGAAAGTTTCAGCTACTACACCGAGAAATGATGTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR-3UTR TCA 90 bp GGAGCACCACCCATTCCAGAAATAAAACCCAGCCTCTCACAGCTAAACCTCCAGGAACTGTTGGTCCAATaGAACACCCACATTTTGAAG +
Preference number: 2 (lower is better)
Translates to: GAPPIPEIKPSLSQLNLQELLVQ*NTHILK
Trigger: CTTCAAAATGTGGGTGTTTCATTGGACCAACAGTTC...CTGGAGGTTTAGCTGTGAGAGGCTGGGTTTTATTTCTGGAATGGGTGGTGCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR GCA 90 bp AGCTGCCCTGGAGGTACTGACTCACTGAAATTAGAATCTCATCACAGCATAACGGGGCTGGGAAAAATATaGATCACCTGGAATCCAGCC +
Preference number: 2 (lower is better)
Translates to: SCPGGTDSLKLESHHSITGLGKI*ITWNPA
Trigger: GGCTGGATTCCAGGTGATGCATATTTTTCCCAGCCC...CGTTATGCTGTGATGAGATTCTAATTTCAGTGAGTCAGTACCTCCAGGGCAGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR GCA 90 bp AAGCTCCCAACACAAAATCCTGTCCTGTGGCTGAAGTCTGCCCTACGACTCTATTGTCACCTGGGACATTaGTCTGGACAAAACTATAGG +
Preference number: 2 (lower is better)
Translates to: KLPTQNPVLWLKSALRLYCHLGH*SGQNYR
Trigger: CCTATAGTTTTGTCCAGAGCAATGTCCCAGGTGACA...ATAGAGTCGTAGGGCAGACTTCAGCCACAGGACAGGATTTTGTGTTGGGAGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR GCA 90 bp TCCTCTGAGGCTATTAGGGCAAGCAAGTCCAGCTGGAAGTCAGACAGGCATGATCTTAAGTTTCTACACTaGGATTCCCTTGAGGAATGG +
Preference number: 2 (lower is better)
Translates to: SSEAIRASKSSWKSDRHDLKFLH*DSLEEW
Trigger: CCATTCCTCAAGGGAATCGCAGTGTAGAAACTTAAG...ATCATGCCTGTCTGACTTCCAGCTGGACTTGCTTGCCCTAATAGCCTCAGAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR GCA 90 bp CTGTTGGTGTTAGAGGAACAAAGCTTTAGTTGTCACTTAGGAAGACGCTTCAGGGATACTATGCCCATGTaGCCATGTGCCCATGTGCGT +
Preference number: 2 (lower is better)
Translates to: LLVLEEQSFSCHLGRRFRDTMPM*PCAHVR
Trigger: ACGCACATGGGCACATGGGCACATGGGCATAGTATC...CCTGAAGCGTCTTCCTAAGTGACAACTAAAGCTTTGTTCCTCTAACACCAACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR CCA 90 bp ACAGAGTTAAACCCAAAGCACAGAGCAATATCAGTGCTGGGCAGATCTGCCATGAACTATAGGTGTGTATaGGGCACGGAACATGGGACT +
Preference number: 2 (lower is better)
Translates to: TELNPKHRAISVLGRSAMNYRCV*GTEHGT
Trigger: AGTCCCATGTTCCGTGCCCCATACACACCTATAGTT...CATGGCAGATCTGCCCAGCACTGATATTGCTCTGTGCTTTGGGTTTAACTCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR CCA 90 bp AACACTTTCTCAAATTTCCCATTTGTGTGTGACTTTGAGAACTGGGCGATGGTGCACTCAAACCTCCTGTaGTGTGGCCTGGAGAACAGC +
Preference number: 2 (lower is better)
Translates to: NTFSNFPFVCDFENWAMVHSNLL*CGLENS
Trigger: GCTGTTCTCCAGGCCACACCACAGGAGGTTTGAGTG...CACCATCGCCCAGTTCTCAAAGTCACACACAAATGGGAAATTTGAGAAAGTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR TCA 90 bp CCATCTAGGGGCATGATTTCCTTCAAGAAAGTGACTTTCAGGGGCGAGTGGTGGCATTTTGCAGAATTCTaGGTGTGTTGTTTCTTTGGC +
Preference number: 2 (lower is better)
Translates to: PSRGMISFKKVTFRGEWWHFAEF*VCCFFG
Trigger: GCCAAAGAAACAACACACTCAGAATTCTGCAAAATG...CCACCACTCGCCCCTGAAAGTCACTTTCTTGAAGGAAATCATGCCCCTAGATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CAA 90 bp AGCTGGGATTGCATCTTGGGGGAAATGACACCATTGGTTCCTTCCTaGGGTTGGAAATGTCTGAATTATACCAAGTTGTCAGAAAGCCGA +
Preference number: 2 (lower is better)
Translates to: SWDCILGEMTPLVPS*GWKCLNYTKLSESR
Trigger: TCGGCTTTCTGACAACTTGGTATAATTCAGACATTTCCAACCCAAGGAAGGAACCAATGGTGTCATTTCCCCCAAGATGCAATCCCAGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR TCA 90 bp AGCTGCCCTGGAGGTACTGACTCACTGAAATTAGAATCTCATCACAGCATAACGAGAGCAGCTGTGCAGTaGTCTTTAAACTGGACTTTG +
Preference number: 2 (lower is better)
Translates to: SCPGGTDSLKLESHHSITRAAVQ*SLNWTL
Trigger: CAAAGTCCAGTTTAAAGATCACTGCACAGCTGCTCT...CGTTATGCTGTGATGAGATTCTAATTTCAGTGAGTCAGTACCTCCAGGGCAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR CCA 90 bp ACAGAGTTAAACCCAAAGCACAGAGCAATATCAGTGCTGGGCAGATCTGCCATGAGACATTCTGAGCCGTaGTCCTCAACTTTTCAATGT +
Preference number: 2 (lower is better)
Translates to: TELNPKHRAISVLGRSAMRHSEP*SSTFQC
Trigger: ACATTGAAAAGTTGAGGACCACGGCTCAGAATGTCT...CATGGCAGATCTGCCCAGCACTGATATTGCTCTGTGCTTTGGGTTTAACTCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR CCA 90 bp AGCTGCCCTGGAGGTACTGACTCACTGAAATTAGAATCTCATCACAGCATAACGAGTGTGTTGTTTCTTTaGCCTTCCCAGGAATTCTCC +
Preference number: 2 (lower is better)
Translates to: SCPGGTDSLKLESHHSITSVLFL*PSQEFS
Trigger: GGAGAATTCCTGGGAAGGCCAAAGAAACAACACACT...CGTTATGCTGTGATGAGATTCTAATTTCAGTGAGTCAGTACCTCCAGGGCAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CAA 90 bp GGATTGCATCTTGGGGGAAATGACACCATTGGTTCCTTCCTTGGGTaGGAAATGTCTGAATTATACCAAGTTGTCAGAAAGCCGATATCC +
Preference number: 2 (lower is better)
Translates to: GLHLGGNDTIGSFLG*EMSELYQVVRKPIS
Trigger: GGATATCGGCTTTCTGACAACTTGGTATAATTCAGACATTTCCAACCCAAGGAAGGAACCAATGGTGTCATTTCCCCCAAGATGCAATCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CAA 90 bp CGTAAACACAAGAGCTGGGATTGCATCTTGGGGGAAATGACACCATaGGTTCCTTCCTTGGGTTGGAAATGTCTGAATTATACCAAGTTG +
Preference number: 2 (lower is better)
Translates to: RKHKSWDCILGEMTP*VPSLGWKCLNYTKL
Trigger: CAACTTGGTATAATTCAGACATTTCCAACCCAAGGAAGGAACCAATGGTGTCATTTCCCCCAAGATGCAATCCCAGCTCTTGTGTTTACG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CAA 90 bp GGAGTCTTTCAGATTTGGTTTGACAATGGAAGAATTGGGAGAATGTaGCCACTGGCACCTACAGGATATTTACACTCCAGTTCTGACTCT +
Preference number: 2 (lower is better)
Translates to: GVFQIWFDNGRIGRM*PLAPTGYLHSSSDS
Trigger: AGAGTCAGAACTGGAGTGTAAATATCCTGTAGGTGCCAGTGGCAACATTCTCCCAATTCTTCCATTGTCAAACCAAATCTGAAAGACTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR TCA 90 bp GATCATCAATATCCATCTAGGGGCATGATTTCCTTCAAGAAAGTGACTTTCAGGGAAGTCAGACAGGCATaGTTTCTAGACACACACCGA +
Preference number: 2 (lower is better)
Translates to: DHQYPSRGMISFKKVTFREVRQA*FLDTHR
Trigger: TCGGTGTGTGTCTAGAAATCATGCCTGTCTGACTTC...CCTGAAAGTCACTTTCTTGAAGGAAATCATGCCCCTAGATGGATATTGATGATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR CCA 90 bp CTGTTGGTGTTAGAGGAACAAAGCTTTAGTTGTCACTTAGGAAGACGCTTCAGGCTCAACTTTTCAATGTaGCTCTTCTCCCAGAGAGAT +
Preference number: 2 (lower is better)
Translates to: LLVLEEQSFSCHLGRRFRLNFSM*LFSQRD
Trigger: ATCTCTCTGGGAGAAGAGCCACATTGAAAAGTTGAG...CCTGAAGCGTCTTCCTAAGTGACAACTAAAGCTTTGTTCCTCTAACACCAACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR CCA 90 bp AGCTGCCCTGGAGGTACTGACTCACTGAAATTAGAATCTCATCACAGCATAACGTTTGGAAAGTTCCATTaGAGGGGAATGAGAACGATA +
Preference number: 2 (lower is better)
Translates to: SCPGGTDSLKLESHHSITFGKFH*RGMRTI
Trigger: TATCGTTCTCATTCCCCTCCAATGGAACTTTCCAAA...CGTTATGCTGTGATGAGATTCTAATTTCAGTGAGTCAGTACCTCCAGGGCAGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR CCA 90 bp GATCATCAATATCCATCTAGGGGCATGATTTCCTTCAAGAAAGTGACTTTCAGGGATTCCCTTGAGGAATaGGGGAACATCACAATGACC +
Preference number: 2 (lower is better)
Translates to: DHQYPSRGMISFKKVTFRDSLEE*GNITMT
Trigger: GGTCATTGTGATGTTCCCCCATTCCTCAAGGGAATC...CCTGAAAGTCACTTTCTTGAAGGAAATCATGCCCCTAGATGGATATTGATGATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CAA 90 bp GGAAGTCAGACAGGCATGATTTCTAGACACACACCGAAATACATTTaGCAGAATTCTGAGTGTGTTGTTTCTTTGGCCTTCCCAGGAATT +
Preference number: 2 (lower is better)
Translates to: GSQTGMISRHTPKYI*QNSECVVSLAFPGI
Trigger: AATTCCTGGGAAGGCCAAAGAAACAACACACTCAGAATTCTGCAAAATGTATTTCGGTGTGTGTCTAGAAATCATGCCTGTCTGACTTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR CCA 90 bp GATCATCAATATCCATCTAGGGGCATGATTTCCTTCAAGAAAGTGACTTTCAGGTGGGCAGATCTGCCATaGGCATTAACGAATCACTTT +
Preference number: 2 (lower is better)
Translates to: DHQYPSRGMISFKKVTFRWADLP*ALTNHF
Trigger: AAAGTGATTCGTTAATGCCCATGGCAGATCTGCCCA...CCTGAAAGTCACTTTCTTGAAGGAAATCATGCCCCTAGATGGATATTGATGATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR CCA 90 bp AGCTGCCCTGGAGGTACTGACTCACTGAAATTAGAATCTCATCACAGCATAACGGGAGTCTTTCAGATTTaGTTTGACAATGGAAGAATT +
Preference number: 2 (lower is better)
Translates to: SCPGGTDSLKLESHHSITGVFQI*FDNGRI
Trigger: AATTCTTCCATTGTCAAACCAAATCTGAAAGACTCC...CGTTATGCTGTGATGAGATTCTAATTTCAGTGAGTCAGTACCTCCAGGGCAGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CAA 90 bp CAAATGCTGGCATTAAAGTCACATACTACCATTCCTGGCTCAGTCTaGACCATGTTTTCAAAGCTCTTAAAATGCTCCGATGCTAAGATA +
Preference number: 2 (lower is better)
Translates to: QMLALKSHTTIPGSV*TMFSKLLKCSDAKI
Trigger: TATCTTAGCATCGGAGCATTTTAAGAGCTTTGAAAACATGGTCAAGACTGAGCCAGGAATGGTAGTATGTGACTTTAATGCCAGCATTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR-3UTR CCA 90 bp ATACTTATTTATATTTTTGCTAACAAATCCAGCACGGGCATGTTTGTCAGGCCGTTGTCATCTGTATCTTaGTTCACCTTAAGGAGGATT +
Preference number: 2 (lower is better)
Translates to: ILIYIFANKSSTGMFVRPLSSVS*FTLRRI
Trigger: AATCCTCCTTAAGGTGAACCAAGATACAGATGACAA...CGGCCTGACAAACATGCCCGTGCTGGATTTGTTAGCAAAAATATAAATAAGTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR GCA 72 bp AGCACGGGCATGTTTGTCAGGCCGGTTCTACTGGGCTaGTCTGCTGGCTTAGCTCTGCTGGCTTCTGCCCAC +
Preference number: 3 (lower is better)
Translates to: STGMFVRPVLLG*SAGLALLASAH
Trigger: GTGGGCAGAAGCCAGCAGAGCTAAGCCAGCAGAGCAGCCCAGTAGAACCGGCCTGACAAACATGCCCGTGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR GCA 72 bp AGGAAGCCGTGGTGGCTCACACCGAAATCCCAGAACTaGTGGGGCAGGGGCTGGGTGCTCATTCCAAGTTTG +
Preference number: 3 (lower is better)
Translates to: RKPWWLTPKSQN*WGRGWVLIPSL
Trigger: CAAACTTGGAATGAGCACCCAGCCCCTGCCCCAGCAGTTCTGGGATTTCGGTGTGAGCCACCACGGCTTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR GCA 72 bp GGGCATGTTTGTCAGGCCGGTTCTACTGGGCTGCTCTaGTGGCTTAGCTCTGCTGGCTTCTGCCCACAACAC +
Preference number: 3 (lower is better)
Translates to: GHVCQAGSTGLL*WLSSAGFCPQH
Trigger: GTGTTGTGGGCAGAAGCCAGCAGAGCTAAGCCAGCAGAGCAGCCCAGTAGAACCGGCCTGACAAACATGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR CCA 72 bp AGCTGGCACACTCGCACAGTGTGTCACCTGCCGGGCTaGACCCTGGCTCTAAACAGTGGGGTGACTTTGTTC +
Preference number: 3 (lower is better)
Translates to: SWHTRTVCHLPG*TLALNSGVTLF
Trigger: GAACAAAGTCACCCCACTGTTTAGAGCCAGGGTCCAGCCCGGCAGGTGACACACTGTGCGAGTGTGCCAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 72 bp TGGGGTGGTGAAGACTTCCTGAAGGAGAGGCATCCATaGTCAGATGCCCAGTCTTCCCGCCGCAGTGAGCTG +
Preference number: 3 (lower is better)
Translates to: WGGEDFLKERHP*SDAQSSRRSEL
Trigger: CAGCTCACTGCGGCGGGAAGACTGGGCATCTGACCATGGATGCCTCTCCTTCAGGAAGTCTTCACCACCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 72 bp AAGCCGTGGTGGCTCACACCGAAATCCCAGAACTGCTaGGGCAGGGGCTGGGTGCTCATTCCAAGTTTGAGG +
Preference number: 3 (lower is better)
Translates to: KPWWLTPKSQNC*GRGWVLIPSLR
Trigger: CCTCAAACTTGGAATGAGCACCCAGCCCCTGCCCCAGCAGTTCTGGGATTTCGGTGTGAGCCACCACGGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR TCA 72 bp ACCACAGAACACTCCCCACCAAGGCGTCTGGGGTGGTaGAGACTTCCTGAAGGAGAGGCATCCATGGTCAGA +
Preference number: 3 (lower is better)
Translates to: TTEHSPPRRLGW*RLPEGEASMVR
Trigger: TCTGACCATGGATGCCTCTCCTTCAGGAAGTCTTCACCACCCCAGACGCCTTGGTGGGGAGTGTTCTGTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR GCA 72 bp AGGAAGACGCTTCAGGGTTCACACTCTTCAGGGAAGTaGCAGGAGTCAGAAGAGCAGATGCAGGCTGAGCGA +
Preference number: 3 (lower is better)
Translates to: RKTLQGSHSSGK*QESEEQMQAER
Trigger: TCGCTCAGCCTGCATCTGCTCTTCTGACTCCTGGCACTTCCCTGAAGAGTGTGAACCCTGAAGCGTCTTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 72 bp AGAGAGGCCTTTGGGCAGCAAACTCCCCATCTGGGCTaGGAAAAATATGCATCACCTGGAATCCAGCCCAGG +
Preference number: 3 (lower is better)
Translates to: REAFGQQTPHLG*EKYASPGIQPR
Trigger: CCTGGGCTGGATTCCAGGTGATGCATATTTTTCCCAGCCCAGATGGGGAGTTTGCTGCCCAAAGGCCTCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 72 bp CAACTTTTCAATGTGGCTCTTCTCCCAGAGAGATGCTaGCAGCTTGTCGGGCTGAGGAGGGGCTTTCACCAG +
Preference number: 3 (lower is better)
Translates to: QLFNVALLPERC*QLVGLRRGFHQ
Trigger: CTGGTGAAAGCCCCTCCTCAGCCCGACAAGCTGCCAGCATCTCTCTGGGAGAAGAGCCACATTGAAAAGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR GCA 72 bp GGGTACAAGAACTTGCTGAGCTACGGCACTGGATGCTaGTTCCTATGTGTCTCCAGGACACAGAAGGTGAGG +
Preference number: 3 (lower is better)
Translates to: GYKNLLSYGTGC*FLCVSRTQKVR
Trigger: CCTCACCTTCTGTGTCCTGGAGACACATAGGAAGCAGCATCCAGTGCCGTAGCTCAGCAAGTTCTTGTACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR GCA 72 bp TCTAGGAATGTGGATGGCTTACCAGCCTGGAAGAAGTaGCCCTCCCTTCTCCCCTGGGAAGGAATTCTCGTA +
Preference number: 3 (lower is better)
Translates to: SRNVDGLPAWKK*PSLLPWEGILV
Trigger: TACGAGAATTCCTTCCCAGGGGAGAAGGGAGGGGCACTTCTTCCAGGCTGGTAAGCCATCCACATTCCTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 72 bp AAATGGTTACCACAGAACACTCCCCACCAAGGCGTCTaGGGTGGTGAAGACTTCCTGAAGGAGAGGCATCCA +
Preference number: 3 (lower is better)
Translates to: KWLPQNTPHQGV*GGEDFLKERHP
Trigger: TGGATGCCTCTCCTTCAGGAAGTCTTCACCACCCCAGACGCCTTGGTGGGGAGTGTTCTGTGGTAACCATTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 72 bp ACTTCTTTGGCTTGTCCCAGTCAGACAGCTGCCTATTaGTCCAGCCTAACTGTCACCTTCCTTCCCAGCCAC +
Preference number: 3 (lower is better)
Translates to: TSLACPSQTAAY*SSLTVTFLPSH
Trigger: GTGGCTGGGAAGGAAGGTGACAGTTAGGCTGGACCAATAGGCAGCTGTCTGACTGGGACAAGCCAAAGAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 72 bp TATGTGGGAGAACCTGTCAGCAGGACTAACCTGAAGTaGGAACATGAGAACGAGGAAGCCGTGGTGGCTCAC +
Preference number: 3 (lower is better)
Translates to: YVGEPVSRTNLK*EHENEEAVVAH
Trigger: GTGAGCCACCACGGCTTCCTCGTTCTCATGTTCCCACTTCAGGTTAGTCCTGCTGACAGGTTCTCCCACATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR-3UTR CAA 90 bp GAGGGAGCACCACCCATTCCAGAAATAAAACCCAGCCTCTCACAGCTAAACCTCAAACCAGAGAGGCCTTaGGGCAGCAAACTCCCCATC +
Preference number: 3 (lower is better)
Translates to: EGAPPIPEIKPSLSQLNLKPERP*GSKLPI
Trigger: GATGGGGAGTTTGCTGCCCAAAGGCCTCTCTGGTTT...GAGGTTTAGCTGTGAGAGGCTGGGTTTTATTTCTGGAATGGGTGGTGCTCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR GCA 72 bp GATGGGTACAAGAACTTGCTGAGCTACGGCACTGGATaGTGCTTCCTATGTGTCTCCAGGACACAGAAGGTG +
Preference number: 3 (lower is better)
Translates to: DGYKNLLSYGTG*CFLCVSRTQKV
Trigger: CACCTTCTGTGTCCTGGAGACACATAGGAAGCAGCATCCAGTGCCGTAGCTCAGCAAGTTCTTGTACCCATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR GCA 72 bp GCTCCCAACACAAAATCCTGTCCTGTGGCTGAAGTCTaGCCTACGACTCTATTAGATCTGGTAGGGTCAGGC +
Preference number: 3 (lower is better)
Translates to: APNTKSCPVAEV*PTTLLDLVGSG
Trigger: GCCTGACCCTACCAGATCTAATAGAGTCGTAGGGCAGACTTCAGCCACAGGACAGGATTTTGTGTTGGGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR GCA 72 bp CCAGCCTGGCCTCGAACTCAGAGAACCACCTACCCCTaGCTCTCAAATGCTGGCATTAAAGTCACATACTAC +
Preference number: 3 (lower is better)
Translates to: PAWPRTQRTTYP*LSNAGIKVTYY
Trigger: GTAGTATGTGACTTTAATGCCAGCATTTGAGAGGCAGGGGTAGGTGGTTCTCTGAGTTCGAGGCCAGGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR CCA 72 bp AAACCAGAGAGGCCTTTGGGCAGCAAACTCCCCATCTaGGCTGGGAAAAATATGCATCACCTGGAATCCAGC +
Preference number: 3 (lower is better)
Translates to: KPERPLGSKLPI*AGKNMHHLESS
Trigger: GCTGGATTCCAGGTGATGCATATTTTTCCCAGCCCAGATGGGGAGTTTGCTGCCCAAAGGCCTCTCTGGTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 72 bp TTACCAGCCTGGAAGAAGTGCCCCTCCCTTCTCCCCTaGGAAGGAATTCTCGTAAACACAAGAGCTGGGATT +
Preference number: 3 (lower is better)
Translates to: LPAWKKCPSLLP*EGILVNTRAGI
Trigger: AATCCCAGCTCTTGTGTTTACGAGAATTCCTTCCCAGGGGAGAAGGGAGGGGCACTTCTTCCAGGCTGGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 72 bp ATCTACAATTCTAGGAATGTGGATGGCTTACCAGCCTaGAAGAAGTGCCCCTCCCTTCTCCCCTGGGAAGGA +
Preference number: 3 (lower is better)
Translates to: IYNSRNVDGLPA*KKCPSLLPWEG
Trigger: TCCTTCCCAGGGGAGAAGGGAGGGGCACTTCTTCCAGGCTGGTAAGCCATCCACATTCCTAGAATTGTAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR CAA 90 bp GAAGAAGTGCCCCTCCCTTCTCCCCTGGGAAGGAATTCTCGTAAACACAAGAGCCTGTCCAGTGGCAATTaGGAAAGTTCCATTGGAGGG +
Preference number: 3 (lower is better)
Translates to: EEVPLPSPLGRNSRKHKSLSSGN*ESSIGG
Trigger: CCCTCCAATGGAACTTTCCAAATTGCCACTGGACAG...GCTCTTGTGTTTACGAGAATTCCTTCCCAGGGGAGAAGGGAGGGGCACTTCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR TCA 72 bp ACAACCCCAGCAGGTCCCTCCCGCACCTTTGTGTGGTaGCTGTTGGTGTTAGAGGAACAAAGCTTTAGTTGT +
Preference number: 3 (lower is better)
Translates to: TTPAGPSRTFVW*LLVLEEQSFSC
Trigger: ACAACTAAAGCTTTGTTCCTCTAACACCAACAGTCACCACACAAAGGTGCGGGAGGGACCTGCTGGGGTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR CAA 90 bp AACTTGCTACACAGACCCATCCTATTCTGGGACAGGGTGACTTGGAGTCTGGGGTTGACAATGGAAGAATaGGGAGAATGTTGCCACTGG +
Preference number: 3 (lower is better)
Translates to: NLLHRPILFWDRVTWSLGLTMEE*GECCHW
Trigger: CCAGTGGCAACATTCTCCCAATTCTTCCATTGTCAA...CCCCAGACTCCAAGTCACCCTGTCCCAGAATAGGATGGGTCTGTGTAGCAAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 72 bp CGCACAATAAGATGGCTGCTCAGACATTCTGAGCCGTaGTCCTCAACTTTTCAATGTGGCTCTTCTCCCAGA +
Preference number: 3 (lower is better)
Translates to: RTIRWLLRHSEP*SSTFQCGSSPR
Trigger: TCTGGGAGAAGAGCCACATTGAAAAGTTGAGGACCACGGCTCAGAATGTCTGAGCAGCCATCTTATTGTGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 72 bp CGCACAAGATACTCATCTAATGAGAGAGAGGAGAGATaGAGGACCCAGGTTCTCCATCTTCAGCACACGACA +
Preference number: 3 (lower is better)
Translates to: RTRYSSNEREER*RTQVLHLQHTT
Trigger: TGTCGTGTGCTGAAGATGGAGAACCTGGGTCCTCCATCTCTCCTCTCTCTCATTAGATGAGTATCTTGTGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR CAA 90 bp CAGGACACAGAAGGTGAGGGAGCACCACCCATTCCAGAAATAAAACCCAGCCTCATTTGGAAAGTTCCATaGGAGGGGAATGAGAACGAT +
Preference number: 3 (lower is better)
Translates to: QDTEGEGAPPIPEIKPSLIWKVP*EGNEND
Trigger: ATCGTTCTCATTCCCCTCCAATGGAACTTTCCAAAT...GAGGCTGGGTTTTATTTCTGGAATGGGTGGTGCTCCCTCACCTTCTGTGTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR GCA 72 bp AGTAGGAAGGGGGTCTCAGCTCTTAAGTTTCTACACTaGGATTCCCTTGAGGAATGGGGGAACATCACAATG +
Preference number: 3 (lower is better)
Translates to: SRKGVSALKFLH*DSLEEWGNITM
Trigger: CATTGTGATGTTCCCCCATTCCTCAAGGGAATCGCAGTGTAGAAACTTAAGAGCTGAGACCCCCTTCCTACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR GCA 72 bp CTGGGAAGGAATTCTCGTAAACACAAGAGCTGGGATTaGATCTTGGGGGAAATGACACCATTGGTTCCTTCC +
Preference number: 3 (lower is better)
Translates to: LGRNSRKHKSWD*ILGEMTPLVPS
Trigger: GGAAGGAACCAATGGTGTCATTTCCCCCAAGATGCAATCCCAGCTCTTGTGTTTACGAGAATTCCTTCCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 72 bp CTGGACACTGTCCAGTGGCAATTTGGAAAGTTCCATTaGAGGGGAATGAGAACGATAGGAGGAGTGTCCAAA +
Preference number: 3 (lower is better)
Translates to: LDTVQWQFGKFH*RGMRTIGGVSK
Trigger: TTTGGACACTCCTCCTATCGTTCTCATTCCCCTCCAATGGAACTTTCCAAATTGCCACTGGACAGTGTCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 72 bp TTCTCAAATTTCCCATTTGTGTGTGACTTTGAGAACTaGGCGATGGTGGGAAGACCACCATGCGACTGTAGC +
Preference number: 3 (lower is better)
Translates to: FSNFPFVCDFEN*AMVGRPPCDCS
Trigger: GCTACAGTCGCATGGTGGTCTTCCCACCATCGCCCAGTTCTCAAAGTCACACACAAATGGGAAATTTGAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR CAA 90 bp AGCTGCCCTGGAGGTACTGACTCACTGAAATTAGAATCTCATCACAGCATAACGACTAACTTCTTTGGCTaGTCCCAGTCAGACAGCTGC +
Preference number: 3 (lower is better)
Translates to: SCPGGTDSLKLESHHSITTNFFG*SQSDSC
Trigger: GCAGCTGTCTGACTGGGACAAGCCAAAGAAGTTAGT...CGTTATGCTGTGATGAGATTCTAATTTCAGTGAGTCAGTACCTCCAGGGCAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR-3UTR CAA 90 bp AGTTCTGACTCTGGTGGCTTAAATATGATTGGAGAAGGTCAAGGTGAGACTCTGTACACTGCGATTCCCTaGAGGAATGGGGGAACATCA +
Preference number: 3 (lower is better)
Translates to: SSDSGGLNMIGEGQGETLYTAIP*RNGGTS
Trigger: TGATGTTCCCCCATTCCTCAAGGGAATCGCAGTGTA...CAGAGTCTCACCTTGACCTTCTCCAATCATATTTAAGCCACCAGAGTCAGAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR TCA 72 bp TTCATAAGCTCCCAACACAAAATCCTGTCCTGTGGCTaGAGTCTGCCCTACGACTCTATTAGATCTGGTAGG +
Preference number: 3 (lower is better)
Translates to: FISSQHKILSCG*SLPYDSIRSGR
Trigger: CCTACCAGATCTAATAGAGTCGTAGGGCAGACTTCAGCCACAGGACAGGATTTTGTGTTGGGAGCTTATGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR TCA 72 bp GCCACTGGCACCTACAGGATATTTACACTCCAGTTCTaGCTCTGGTGGCTTAAATATGATTGGAGAAGGTCA +
Preference number: 3 (lower is better)
Translates to: ATGTYRIFTLQF*LWWLKYDWRRS
Trigger: TGACCTTCTCCAATCATATTTAAGCCACCAGAGTCAGAACTGGAGTGTAAATATCCTGTAGGTGCCAGTGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR TCA 72 bp TACTGGACTCCCTACCCAAATGGCCAAGGTCTCGAGTaGAATTTGGCTCCTGAGTCTCTAAGTATTCTTGAT +
Preference number: 3 (lower is better)
Translates to: YWTPYPNGQGLE*NLAPESLSILD
Trigger: ATCAAGAATACTTAGAGACTCAGGAGCCAAATTTCACTCGAGACCTTGGCCATTTGGGTAGGGAGTCCAGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR TCA 72 bp CTGTGGTCTGCAGGCTGTAATACTTCTCTGTATTCATaGGCCCTGACATTCATAAGCTCCCAACACAAAATC +
Preference number: 3 (lower is better)
Translates to: LWSAGCNTSLYS*ALTFISSQHKI
Trigger: GATTTTGTGTTGGGAGCTTATGAATGTCAGGGCTCATGAATACAGAGAAGTATTACAGCCTGCAGACCACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 72 bp CTTATTCAGTGTCCAGACTTGTTACCAAAGAAGAAGTaGAAACCTAAGGGTCACCTGGAAGCAAAACCAGAG +
Preference number: 3 (lower is better)
Translates to: LIQCPDLLPKKK*KPKGHLEAKPE
Trigger: CTCTGGTTTTGCTTCCAGGTGACCCTTAGGTTTCCACTTCTTCTTTGGTAACAAGTCTGGACACTGAATAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 72 bp GGTTTGACAATGGAAGAATTGGGAGAATGTTGCCACTaGCACCTACAGGATATTTACACTCCAGTTCTGACT +
Preference number: 3 (lower is better)
Translates to: GLTMEELGECCH*HLQDIYTPVLT
Trigger: AGTCAGAACTGGAGTGTAAATATCCTGTAGGTGCCAGTGGCAACATTCTCCCAATTCTTCCATTGTCAAACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR TCA 72 bp CAATTTCATTGCTTTCTCCAGCTGCCCTGGAGGTACTaGCTCACTGAAATTAGAATCTCATCACAGCATAAC +
Preference number: 3 (lower is better)
Translates to: QFHCFLQLPWRY*LTEIRISSQHN
Trigger: GTTATGCTGTGATGAGATTCTAATTTCAGTGAGTCAGTACCTCCAGGGCAGCTGGAGAAAGCAATGAAATTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR TCA 72 bp TGGAAACCCAGATCACCATATACATATTCTTACAATTaGTCCTTAGTAGGCGCCTCCTGGGGTTTCCAAAGA +
Preference number: 3 (lower is better)
Translates to: WKPRSPYTYSYN*SLVGASWGFQR
Trigger: TCTTTGGAAACCCCAGGAGGCGCCTACTAAGGATCAATTGTAAGAATATGTATATGGTGATCTGGGTTTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR GCA 72 bp GTTCCTTGCATAGACAATTTCATTGCTTTCTCCAGCTaGCCTGGAGGTACTGACTCACTGAAATTAGAATCT +
Preference number: 3 (lower is better)
Translates to: VPCIDNFIAFSS*PGGTDSLKLES
Trigger: AGATTCTAATTTCAGTGAGTCAGTACCTCCAGGGCAGCTGGAGAAAGCAATGAAATTGTCTATGCAAGGAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 72 bp GCTCTTAAGTTTCTACACTGCGATTCCCTTGAGGAATaGGGGAACATCACAATGACCAACTGCAATTCAAAT +
Preference number: 3 (lower is better)
Translates to: ALKFLHCDSLEE*GNITMTNCNSN
Trigger: ATTTGAATTGCAGTTGGTCATTGTGATGTTCCCCCATTCCTCAAGGGAATCGCAGTGTAGAAACTTAAGAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 72 bp TTGGGGGAAATGACACCATTGGTTCCTTCCTTGGGTTaGAAATGTCTGAATTATACCAAGTTGTCAGAAAGC +
Preference number: 3 (lower is better)
Translates to: LGEMTPLVPSLG*KCLNYTKLSES
Trigger: GCTTTCTGACAACTTGGTATAATTCAGACATTTCCAACCCAAGGAAGGAACCAATGGTGTCATTTCCCCCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 72 bp AGTCAATGTTTCACAATCACGAGGCATAAAGGTACGTaGTTCGAAAACCAATCTCCAGGCAGATTCTTCTCA +
Preference number: 3 (lower is better)
Translates to: SQCFTITRHKGT*FENQSPGRFFS
Trigger: TGAGAAGAATCTGCCTGGAGATTGGTTTTCGAACCACGTACCTTTATGCCTCGTGATTGTGAAACATTGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR TCA 72 bp GGGACCTTAGAGATAGCACAGGAACTGTTGGTCCAATaGAACACCCACATTTTGAAGCAAACATATCTATTT +
Preference number: 3 (lower is better)
Translates to: GTLEIAQELLVQ*NTHILKQTYLF
Trigger: AAATAGATATGTTTGCTTCAAAATGTGGGTGTTTCATTGGACCAACAGTTCCTGTGCTATCTCTAAGGTCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 72 bp AAGAGAAATATAACACTCAGTAGCAGGCTTTGTGTTTaGCTCTTATTCAGTGTCCAGACTTGTTACCAAAGA +
Preference number: 3 (lower is better)
Translates to: KRNITLSSRLCV*LLFSVQTCYQR
Trigger: TCTTTGGTAACAAGTCTGGACACTGAATAAGAGCCAAACACAAAGCCTGCTACTGAGTGTTATATTTCTCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CCA 72 bp TCAAATGCTGGCATTAAAGTCACATACTACCATTCCTaGCTCAGTCTTGACCATGTTTTCAAAGCTCTTAAA +
Preference number: 3 (lower is better)
Translates to: SNAGIKVTYYHS*LSLDHVFKALK
Trigger: TTTAAGAGCTTTGAAAACATGGTCAAGACTGAGCCAGGAATGGTAGTATGTGACTTTAATGCCAGCATTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR CCA 90 bp TCCCGCCCTGCTCGTAGGCACCCCAGTTTTCTTCCCTTCTGTCCTCCTAGTCCCGCGTGGGTGGCGTACTaGGGGAGCCCGGGGCACCCA +
Preference number: 4 (lower is better)
Translates to: SRPARRHPSFLPFCPPSPAWVAY*GSPGHP
Trigger: TGGGTGCCCCGGGCTCCCCCAGTACGCCACCCACGC...GGGACTAGGAGGACAGAAGGGAAGAAAACTGGGGTGCCTACGAGCAGGGCGGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR CCA 90 bp GAACGAGGAAGCCGTGGTGGCTCACACCGAAATCCCAGAACTGCTGGGGCAGGGATGGGGCGGGCGATGTaGTCTGCGCTGCACTCCACC +
Preference number: 4 (lower is better)
Translates to: ERGSRGGSHRNPRTAGAGMGRAM*SALHST
Trigger: GGTGGAGTGCAGCGCAGACCACATCGCCCGCCCCAT...CCCTGCCCCAGCAGTTCTGGGATTTCGGTGTGAGCCACCACGGCTTCCTCGTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR CCA 90 bp GGGAACATGAGAACGAGGAAGCCGTGGTGGCTCACACCGAAATCCCAGAACTGCGCGTGGGTGGCGTACTaGGGGAGCCCGGGGCACCCA +
Preference number: 4 (lower is better)
Translates to: GNMRTRKPWWLTPKSQNCAWVAY*GSPGHP
Trigger: TGGGTGCCCCGGGCTCCCCCAGTACGCCACCCACGC...GCAGTTCTGGGATTTCGGTGTGAGCCACCACGGCTTCCTCGTTCTCATGTTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR GCA 90 bp CCCGCCCTGCTCGTAGGCACCCCAGTTTTCTTCCCTTCTGTCCTCCTAGTCCCCTGCGTGATGTGGTGCTaGAGCAGGCGCGATGCCACC +
Preference number: 4 (lower is better)
Translates to: PALLVGTPVFFPSVLLVPCVMWC*SRRDAT
Trigger: GGTGGCATCGCGCCTGCTGCAGCACCACATCACGCA...GGGGACTAGGAGGACAGAAGGGAAGAAAACTGGGGTGCCTACGAGCAGGGCGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR TCA 90 bp CCCGCCCTGCTCGTAGGCACCCCAGTTTTCTTCCCTTCTGTCCTCCTAGTCCCCCACTCCACCTCATCCTaGGACAGCCCGAGGAACTCC +
Preference number: 4 (lower is better)
Translates to: PALLVGTPVFFPSVLLVPHSTSS*DSPRNS
Trigger: GGAGTTCCTCGGGCTGTCTCAGGATGAGGTGGAGTG...GGGGACTAGGAGGACAGAAGGGAAGAAAACTGGGGTGCCTACGAGCAGGGCGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR TCA 90 bp CCCAGCAGGTCCCTCCCGCACCTTTGTGTGGTGACTGTTGGTGTTAGAGGAACAGCCCCCGAGCCTGCGTaGCCGTCAAACAGGGACCAG +
Preference number: 4 (lower is better)
Translates to: PSRSLPHLCVVTVGVRGTAPEPA*PSNRDQ
Trigger: CTGGTCCCTGTTTGACGGTCACGCAGGCTCGGGGGC...TGTTCCTCTAACACCAACAGTCACCACACAAAGGTGCGGGAGGGACCTGCTGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR GCA 90 bp GGTCCCGCCCTGCTCGTAGGCACCCCAGTTTTCTTCCCTTCTGTCCTCCTAGTCGCGGGCGATGTGGTCTaGGCTGCACTCCACCTCATC +
Preference number: 4 (lower is better)
Translates to: GPALLVGTPVFFPSVLLVAGDVV*AALHLI
Trigger: GATGAGGTGGAGTGCAGCGCAGACCACATCGCCCGC...GACTAGGAGGACAGAAGGGAAGAAAACTGGGGTGCCTACGAGCAGGGCGGGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR GCA 90 bp GGGAACATGAGAACGAGGAAGCCGTGGTGGCTCACACCGAAATCCCAGAACTGCTGCCGTGGGCTGGCGTaGTCTCTGGCTCCTCCCCCA +
Preference number: 4 (lower is better)
Translates to: GNMRTRKPWWLTPKSQNCCRGLA*SLAPPP
Trigger: TGGGGGAGGAGCCAGAGAGCACGCCAGCCCACGGCA...GCAGTTCTGGGATTTCGGTGTGAGCCACCACGGCTTCCTCGTTCTCATGTTCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR CCA 90 bp GGGAACATGAGAACGAGGAAGCCGTGGTGGCTCACACCGAAATCCCAGAACTGCGAAGAAGCGCGTGGGTaGCGTACTGGGGGAGCCCGG +
Preference number: 4 (lower is better)
Translates to: GNMRTRKPWWLTPKSQNCEEARG*RTGGAR
Trigger: CCGGGCTCCCCCAGTACGCCACCCACGCGCTTCTTC...GCAGTTCTGGGATTTCGGTGTGAGCCACCACGGCTTCCTCGTTCTCATGTTCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR TCA 90 bp ACTTGCTGTGTAGACCAGCCTGGCCTCGAACTCAGAGAACCACCTACCCCTGCCCCTGCAGCTGTTGCGTaGTGTGGTGCTGCAGCAGGC +
Preference number: 4 (lower is better)
Translates to: TCCVDQPGLELREPPTPAPAAVA*CGAAAG
Trigger: GCCTGCTGCAGCACCACATCACGCAACAGCTGCAGG...GGCAGGGGTAGGTGGTTCTCTGAGTTCGAGGCCAGGCTGGTCTACACAGCAAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR TCA 90 bp GGTCCCGCCCTGCTCGTAGGCACCCCAGTTTTCTTCCCTTCTGTCCTCCTAGTCCGCATCACCAGGTCCTaGGCCGCCAGTGTGTATCTG +
Preference number: 4 (lower is better)
Translates to: GPALLVGTPVFFPSVLLVRITRS*AASVYL
Trigger: CAGATACACACTGGCGGCTCAGGACCTGGTGATGCG...GACTAGGAGGACAGAAGGGAAGAAAACTGGGGTGCCTACGAGCAGGGCGGGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000162969.2
CDS-3UTR GCA 90 bp ACTTGCTGTGTAGACCAGCCTGGCCTCGAACTCAGAGAACCACCTACCCCTGCCTGCGTGATGTGGTGCTaGAGCAGGCGCGATGCCACC +
Preference number: 4 (lower is better)
Translates to: TCCVDQPGLELREPPTPACVMWC*SRRDAT
Trigger: GGTGGCATCGCGCCTGCTGCAGCACCACATCACGCA...GGCAGGGGTAGGTGGTTCTCTGAGTTCGAGGCCAGGCTGGTCTACACAGCAAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR CCA 90 bp CCCAGCAGGTCCCTCCCGCACCTTTGTGTGGTGACTGTTGGTGTTAGAGGAACAATGGGGCGGGCGATGTaGTCTGCGCTGCACTCCACC +
Preference number: 4 (lower is better)
Translates to: PSRSLPHLCVVTVGVRGTMGRAM*SALHST
Trigger: GGTGGAGTGCAGCGCAGACCACATCGCCCGCCCCAT...TGTTCCTCTAACACCAACAGTCACCACACAAAGGTGCGGGAGGGACCTGCTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR CCA 90 bp CCCGGTCCCGCCCTGCTCGTAGGCACCCCAGTTTTCTTCCCTTCTGTCCTCCTAACCTCGCAGCTGGCTTaGTCCTCATTGTGTGTGCTC +
Preference number: 4 (lower is better)
Translates to: PGPALLVGTPVFFPSVLLTSQLA*SSLCVL
Trigger: GAGCACACACAATGAGGACCAAGCCAGCTGCGAGGT...TAGGAGGACAGAAGGGAAGAAAACTGGGGTGCCTACGAGCAGGGCGGGACCGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR CCA 90 bp AGCTGCTTTCTTCTAGGGCTTCCAGTTTCCCAGGGGGCTGTGAGGGCTATCTACGTTAGGGTCCTGCCGTaGGCTGGCGTGCTCTCTGGC +
Preference number: 4 (lower is better)
Translates to: SCFLLGLPVSQGAVRAIYVRVLP*AGVLSG
Trigger: GCCAGAGAGCACGCCAGCCCACGGCAGGACCCTAAC...GTAGATAGCCCTCACAGCCCCCTGGGAAACTGGAAGCCCTAGAAGAAAGCAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR TCA 90 bp GAACTGCTGGGGCAGGGGCTGGGTGCTCATTCCAAGTTTGAGGATACCCTGATCCACTCCACCTCATCCTaGGACAGCCCGAGGAACTCC +
Preference number: 4 (lower is better)
Translates to: ELLGQGLGAHSKFEDTLIHSTSS*DSPRNS
Trigger: GGAGTTCCTCGGGCTGTCTCAGGATGAGGTGGAGTG...GATCAGGGTATCCTCAAACTTGGAATGAGCACCCAGCCCCTGCCCCAGCAGTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR TCA 90 bp CCCGGTCCCGCCCTGCTCGTAGGCACCCCAGTTTTCTTCCCTTCTGTCCTCCTACTTTCTTCTTCACTGTaGGCACCTCGCAGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: PGPALLVGTPVFFPSVLLLSSSL*APRSWL
Trigger: AAGCCAGCTGCGAGGTGCTCACAGTGAAGAAGAAAG...TAGGAGGACAGAAGGGAAGAAAACTGGGGTGCCTACGAGCAGGGCGGGACCGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR TCA 90 bp GGCCAGCAAGCACTCCATACTGGGACCTGTCTCAATCCCTCCCCCTACTCCCAAGGATCTTCTTCTCAGTaGAGAAGCGCGTGGGTGGCG +
Preference number: 4 (lower is better)
Translates to: GQQALHTGTCLNPSPYSQGSSSQ*RSAWVA
Trigger: CGCCACCCACGCGCTTCTTCACTGAGAAGAAGATCC...TTGGGAGTAGGGGGAGGGATTGAGACAGGTCCCAGTATGGAGTGCTTGCTGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR TCA 90 bp CAAGCACTCCATACTGGGACCTGTCTCAATCCCTCCCCCTACTCCCAAGAGTTAAGAGGCAAACCACGATaGGGGCCGTGCAGCCGCCAG +
Preference number: 4 (lower is better)
Translates to: QALHTGTCLNPSPYSQELRGKPR*GPCSRQ
Trigger: CTGGCGGCTGCACGGCCCTCATCGTGGTTTGCCTCT...TAACTCTTGGGAGTAGGGGGAGGGATTGAGACAGGTCCCAGTATGGAGTGCTTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR TCA 90 bp GGTCCCGCCCTGCTCGTAGGCACCCCAGTTTTCTTCCCTTCTGTCCTCCTAGTCGCCAGTGTGTATCTGTaGGGGTCGTCTGGATCACAG +
Preference number: 4 (lower is better)
Translates to: GPALLVGTPVFFPSVLLVASVYL*GSSGSQ
Trigger: CTGTGATCCAGACGACCCTCACAGATACACACTGGC...GACTAGGAGGACAGAAGGGAAGAAAACTGGGGTGCCTACGAGCAGGGCGGGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000162969.2
CDS-3UTR GCA 90 bp GAACGAGGAAGCCGTGGTGGCTCACACCGAAATCCCAGAACTGCTGGGGCAGGGAGCATTAATAACCTCTaGGTAGCCAGTGGCCCAGGG +
Preference number: 4 (lower is better)
Translates to: ERGSRGGSHRNPRTAGAGSINNL*VASGPG
Trigger: CCCTGGGCCACTGGCTACGCAGAGGTTATTAATGCT...CCCTGCCCCAGCAGTTCTGGGATTTCGGTGTGAGCCACCACGGCTTCCTCGTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR GCA 90 bp CCCGCCCTGCTCGTAGGCACCCCAGTTTTCTTCCCTTCTGTCCTCCTAGTCCCCATCTCCACGATGTCCTaGAGCTGTTGCGTGATGTGG +
Preference number: 4 (lower is better)
Translates to: PALLVGTPVFFPSVLLVPISTMS*SCCVMW
Trigger: CCACATCACGCAACAGCTGCAGGACATCGTGGAGAT...GGGGACTAGGAGGACAGAAGGGAAGAAAACTGGGGTGCCTACGAGCAGGGCGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR GCA 90 bp AGAAGTGGAAACCTAAGGGTCACCTGGAAGCAAAACCAGAGAGGCCTTTGGGCATGCCGTGGGCTGGCGTaGTCTCTGGCTCCTCCCCCA +
Preference number: 4 (lower is better)
Translates to: RSGNLRVTWKQNQRGLWACRGLA*SLAPPP
Trigger: TGGGGGAGGAGCCAGAGAGCACGCCAGCCCACGGCA...TGCCCAAAGGCCTCTCTGGTTTTGCTTCCAGGTGACCCTTAGGTTTCCACTTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR TCA 90 bp CCCAGCAGGTCCCTCCCGCACCTTTGTGTGGTGACTGTTGGTGTTAGAGGAACAGGATCTTCTTCTCAGTaGAGAAGCGCGTGGGTGGCG +
Preference number: 4 (lower is better)
Translates to: PSRSLPHLCVVTVGVRGTGSSSQ*RSAWVA
Trigger: CGCCACCCACGCGCTTCTTCACTGAGAAGAAGATCC...TGTTCCTCTAACACCAACAGTCACCACACAAAGGTGCGGGAGGGACCTGCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR CCA 90 bp TCCTCTGAGGCTATTAGGGCAAGCAAGTCCAGCTGGAAGTCAGACAGGCATGATGTTAGGGTCCTGCCGTaGGCTGGCGTGCTCTCTGGC +
Preference number: 4 (lower is better)
Translates to: SSEAIRASKSSWKSDRHDVRVLP*AGVLSG
Trigger: GCCAGAGAGCACGCCAGCCCACGGCAGGACCCTAAC...ATCATGCCTGTCTGACTTCCAGCTGGACTTGCTTGCCCTAATAGCCTCAGAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR TCA 90 bp GGTCCCGCCCTGCTCGTAGGCACCCCAGTTTTCTTCCCTTCTGTCCTCCTAGTCAGAAATGTCATCTCCTaGGCCCAGTCGGTCATTCGA +
Preference number: 4 (lower is better)
Translates to: GPALLVGTPVFFPSVLLVRNVIS*AQSVIR
Trigger: TCGAATGACCGACTGGGCTCAGGAGATGACATTTCT...GACTAGGAGGACAGAAGGGAAGAAAACTGGGGTGCCTACGAGCAGGGCGGGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000162969.2
CDS-3UTR GCA 90 bp CGGTCCCGCCCTGCTCGTAGGCACCCCAGTTTTCTTCCCTTCTGTCCTCCTAGTATGACCAGACACTCGTaGGGGATCTTCTTCTCAGTG +
Preference number: 4 (lower is better)
Translates to: RSRPARRHPSFLPFCPPSMTRHS*GIFFSV
Trigger: CACTGAGAAGAAGATCCCGCACGAGTGTCTGGTCAT...ACTAGGAGGACAGAAGGGAAGAAAACTGGGGTGCCTACGAGCAGGGCGGGACCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR GCA 90 bp GAACGAGGAAGCCGTGGTGGCTCACACCGAAATCCCAGAACTGCTGGGGCAGGGCGTCACTCCAATAGTTaGCATTACTCGGGCCTTCTT +
Preference number: 4 (lower is better)
Translates to: ERGSRGGSHRNPRTAGAGRHSNS*HYSGLL
Trigger: AAGAAGGCCCGAGTAATGGCAACTATTGGAGTGACG...CCCTGCCCCAGCAGTTCTGGGATTTCGGTGTGAGCCACCACGGCTTCCTCGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR CCA 90 bp CCCGCCCTGCTCGTAGGCACCCCAGTTTTCTTCCCTTCTGTCCTCCTAGTCCCCCCGCTACTTCTTCGTTaGATAAGACATCCCAGAGTC +
Preference number: 4 (lower is better)
Translates to: PALLVGTPVFFPSVLLVPPLLLR*IRHPRV
Trigger: GACTCTGGGATGTCTTATCCAACGAAGAAGTAGCGG...GGGGACTAGGAGGACAGAAGGGAAGAAAACTGGGGTGCCTACGAGCAGGGCGGG
57% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000162969.2
3UTR CAA 72 bp ACACATGACGCCACATTGCCACATAGCACCCGAAGATaGCCCAGAGAGGTGGGCTGTGGTCTGCAGGCTGTA +
Preference number: 4 (lower is better)
Translates to: THDATLPHSTRR*PREVGCGLQAV
Trigger: TACAGCCTGCAGACCACAGCCCACCTCTCTGGGCAATCTTCGGGTGCTATGTGGCAATGTGGCGTCATGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR TCA 90 bp AAGCTCCCAACACAAAATCCTGTCCTGTGGCTGAAGTCTGCCCTACGACTCTATCCTGCAGCTGTTGCGTaGTGTGGTGCTGCAGCAGGC +
Preference number: 4 (lower is better)
Translates to: KLPTQNPVLWLKSALRLYPAAVA*CGAAAG
Trigger: GCCTGCTGCAGCACCACATCACGCAACAGCTGCAGG...ATAGAGTCGTAGGGCAGACTTCAGCCACAGGACAGGATTTTGTGTTGGGAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR TCA 90 bp CCCGGTCCCGCCCTGCTCGTAGGCACCCCAGTTTTCTTCCCTTCTGTCCTCCTATCTGACCTCTGGAGCTaGAGACAGGAATGGTTTTAT +
Preference number: 4 (lower is better)
Translates to: PGPALLVGTPVFFPSVLLSDLWS*RQEWFY
Trigger: ATAAAACCATTCCTGTCTTCAGCTCCAGAGGTCAGA...TAGGAGGACAGAAGGGAAGAAAACTGGGGTGCCTACGAGCAGGGCGGGACCGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000162969.2
CDS-3UTR TCA 90 bp GGAGCACCACCCATTCCAGAAATAAAACCCAGCCTCTCACAGCTAAACCTCCAGCGCATCACCAGGTCCTaGGCCGCCAGTGTGTATCTG +
Preference number: 4 (lower is better)
Translates to: GAPPIPEIKPSLSQLNLQRITRS*AASVYL
Trigger: CAGATACACACTGGCGGCTCAGGACCTGGTGATGCG...CTGGAGGTTTAGCTGTGAGAGGCTGGGTTTTATTTCTGGAATGGGTGGTGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR GCA 90 bp GATCTAGGCCAGCAAGCACTCCATACTGGGACCTGTCTCAATCCCTCCCCCTACATCTCCACGATGTCCTaGAGCTGTTGCGTGATGTGG +
Preference number: 4 (lower is better)
Translates to: DLGQQALHTGTCLNPSPYISTMS*SCCVMW
Trigger: CCACATCACGCAACAGCTGCAGGACATCGTGGAGAT...GTAGGGGGAGGGATTGAGACAGGTCCCAGTATGGAGTGCTTGCTGGCCTAGATC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR CCA 90 bp TGCTTTCTTCTAGGGCTTCCAGTTTCCCAGGGGGCTGTGAGGGCTATCTACCCTACCTCGCAGCTGGCTTaGTCCTCATTGTGTGTGCTC +
Preference number: 4 (lower is better)
Translates to: CFLLGLPVSQGAVRAIYPTSQLA*SSLCVL
Trigger: GAGCACACACAATGAGGACCAAGCCAGCTGCGAGGT...AGGGTAGATAGCCCTCACAGCCCCCTGGGAAACTGGAAGCCCTAGAAGAAAGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR CCA 90 bp CACTCCAGTTCTGACTCTGGTGGCTTAAATATGATTGGAGAAGGTCAAGGTGAGGAAGAAGCGCGTGGGTaGCGTACTGGGGGAGCCCGG +
Preference number: 4 (lower is better)
Translates to: HSSSDSGGLNMIGEGQGEEEARG*RTGGAR
Trigger: CCGGGCTCCCCCAGTACGCCACCCACGCGCTTCTTC...CTCACCTTGACCTTCTCCAATCATATTTAAGCCACCAGAGTCAGAACTGGAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR CCA 90 bp GAACGAGGAAGCCGTGGTGGCTCACACCGAAATCCCAGAACTGCTGGGGCAGGGCCTCTGCACTCTCCTTaGAAACTCCAAATGTGTGAA +
Preference number: 4 (lower is better)
Translates to: ERGSRGGSHRNPRTAGAGPLHSP*KLQMCE
Trigger: TTCACACATTTGGAGTTTCCAAGGAGAGTGCAGAGG...CCCTGCCCCAGCAGTTCTGGGATTTCGGTGTGAGCCACCACGGCTTCCTCGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR TCA 90 bp TGCTTTCTTCTAGGGCTTCCAGTTTCCCAGGGGGCTGTGAGGGCTATCTACCCTCTTTCTTCTTCACTGTaGGCACCTCGCAGCTGGCTT +
Preference number: 4 (lower is better)
Translates to: CFLLGLPVSQGAVRAIYPLSSSL*APRSWL
Trigger: AAGCCAGCTGCGAGGTGCTCACAGTGAAGAAGAAAG...AGGGTAGATAGCCCTCACAGCCCCCTGGGAAACTGGAAGCCCTAGAAGAAAGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR TCA 90 bp TCCCGCCCTGCTCGTAGGCACCCCAGTTTTCTTCCCTTCTGTCCTCCTAGTCCCCAGTTAGGAAGAAACTaGGTGATTGCTTCCGCTACT +
Preference number: 4 (lower is better)
Translates to: SRPARRHPSFLPFCPPSPQLGRN*VIASAT
Trigger: AGTAGCGGAAGCAATCACTCAGTTTCTTCCTAACTG...GGGACTAGGAGGACAGAAGGGAAGAAAACTGGGGTGCCTACGAGCAGGGCGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000162969.2
CDS-3UTR GCA 90 bp ACTAGCCAGATGGGTCTAGTCTCTGATCTGGACACTGTCCAGTGGCAATTTGGATGTTGCGTGATGTGGTaGTGCAGCAGGCGCGATGCC +
Preference number: 4 (lower is better)
Translates to: TSQMGLVSDLDTVQWQFGCCVMW*CSRRDA
Trigger: GGCATCGCGCCTGCTGCAGCACCACATCACGCAACA...TCCAAATTGCCACTGGACAGTGTCCAGATCAGAGACTAGACCCATCTGGCTAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR CCA 90 bp CAAGCACTCCATACTGGGACCTGTCTCAATCCCTCCCCCTACTCCCAAGAGTTAAGGTCGGGGGAAGGATaGCCGAGTTCTTCAGGATCT +
Preference number: 4 (lower is better)
Translates to: QALHTGTCLNPSPYSQELRSGEG*PSSSGS
Trigger: AGATCCTGAAGAACTCGGCCATCCTTCCCCCGACCT...TAACTCTTGGGAGTAGGGGGAGGGATTGAGACAGGTCCCAGTATGGAGTGCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR CCA 90 bp CAAGCACTCCATACTGGGACCTGTCTCAATCCCTCCCCCTACTCCCAAGAGTTATCATTTCCCAGCAAGTaGGGCTGCATGAACGCCAGG +
Preference number: 4 (lower is better)
Translates to: QALHTGTCLNPSPYSQELSFPSK*GCMNAR
Trigger: CCTGGCGTTCATGCAGCCCCACTTGCTGGGAAATGA...TAACTCTTGGGAGTAGGGGGAGGGATTGAGACAGGTCCCAGTATGGAGTGCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR CCA 90 bp TCCCGCCCTGCTCGTAGGCACCCCAGTTTTCTTCCCTTCTGTCCTCCTAGTCCCCCTCTGCACTCTCCTTaGAAACTCCAAATGTGTGAA +
Preference number: 4 (lower is better)
Translates to: SRPARRHPSFLPFCPPSPPLHSP*KLQMCE
Trigger: TTCACACATTTGGAGTTTCCAAGGAGAGTGCAGAGG...GGGACTAGGAGGACAGAAGGGAAGAAAACTGGGGTGCCTACGAGCAGGGCGGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR CCA 90 bp CGGTCCCGCCCTGCTCGTAGGCACCCCAGTTTTCTTCCCTTCTGTCCTCCTAGTTCTGTGAGGGTCGTCTaGATCACAGTTAGGAAGAAA +
Preference number: 4 (lower is better)
Translates to: RSRPARRHPSFLPFCPPSSVRVV*ITVRKK
Trigger: TTTCTTCCTAACTGTGATCCAGACGACCCTCACAGA...ACTAGGAGGACAGAAGGGAAGAAAACTGGGGTGCCTACGAGCAGGGCGGGACCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000162969.2
3UTR CAA 72 bp TGCACACACACACACACTCACACACATGACGCCACATaGCCACATAGCACCCGAAGATTGCCCAGAGAGGTG +
Preference number: 4 (lower is better)
Translates to: CTHTHTHTHDAT*PHSTRRLPREV
Trigger: CACCTCTCTGGGCAATCTTCGGGTGCTATGTGGCAATGTGGCGTCATGTGTGTGAGTGTGTGTGTGTGTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR TCA 90 bp CTGTTGGTGTTAGAGGAACAAAGCTTTAGTTGTCACTTAGGAAGACGCTTCAGGAGAGGCAAACCACGATaGGGGCCGTGCAGCCGCCAG +
Preference number: 4 (lower is better)
Translates to: LLVLEEQSFSCHLGRRFRRGKPR*GPCSRQ
Trigger: CTGGCGGCTGCACGGCCCTCATCGTGGTTTGCCTCT...CCTGAAGCGTCTTCCTAAGTGACAACTAAAGCTTTGTTCCTCTAACACCAACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR CCA 90 bp CCATCTAGGGGCATGATTTCCTTCAAGAAAGTGACTTTCAGGGGCGAGTGGTGGAGGTCGGGGGAAGGATaGCCGAGTTCTTCAGGATCT +
Preference number: 4 (lower is better)
Translates to: PSRGMISFKKVTFRGEWWRSGEG*PSSSGS
Trigger: AGATCCTGAAGAACTCGGCCATCCTTCCCCCGACCT...CCACCACTCGCCCCTGAAAGTCACTTTCTTGAAGGAAATCATGCCCCTAGATGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR CCA 90 bp GATCTAGGCCAGCAAGCACTCCATACTGGGACCTGTCTCAATCCCTCCCCCTACCCTGTGAGGGTCGTCTaGATCACAGTTAGGAAGAAA +
Preference number: 4 (lower is better)
Translates to: DLGQQALHTGTCLNPSPYPVRVV*ITVRKK
Trigger: TTTCTTCCTAACTGTGATCCAGACGACCCTCACAGG...GTAGGGGGAGGGATTGAGACAGGTCCCAGTATGGAGTGCTTGCTGGCCTAGATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR CAA 72 bp GCTACACAGACCCATCCTATTCTGGGACAGGGTGACTaGGAGTCTGGGGTAACAATAAGGCCCACACAGAGT +
Preference number: 4 (lower is better)
Translates to: ATQTHPILGQGD*ESGVTIRPTQS
Trigger: ACTCTGTGTGGGCCTTATTGTTACCCCAGACTCCAAGTCACCCTGTCCCAGAATAGGATGGGTCTGTGTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CAA 72 bp AACTTCTTTGGCTTGTCCCAGTCAGACAGCTGCCTATaGGTCCAGCCTAACTGTCACCTTCCTTCCCAGCCA +
Preference number: 4 (lower is better)
Translates to: NFFGLSQSDSCL*VQPNCHLPSQP
Trigger: TGGCTGGGAAGGAAGGTGACAGTTAGGCTGGACCAATAGGCAGCTGTCTGACTGGGACAAGCCAAAGAAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR TCA 90 bp GGGAACATGAGAACGAGGAAGCCGTGGTGGCTCACACCGAAATCCCAGAACTGCTCTGACCTCTGGAGCTaGAGACAGGAATGGTTTTAT +
Preference number: 4 (lower is better)
Translates to: GNMRTRKPWWLTPKSQNCSDLWS*RQEWFY
Trigger: ATAAAACCATTCCTGTCTTCAGCTCCAGAGGTCAGA...GCAGTTCTGGGATTTCGGTGTGAGCCACCACGGCTTCCTCGTTCTCATGTTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR GCA 90 bp AACACATCATTTCTCGGTGTAGTAGCTGAAACTTTCCTGCCAGAGCTGCTTTCTGCGGGCGATGTGGTCTaGGCTGCACTCCACCTCATC +
Preference number: 4 (lower is better)
Translates to: NTSFLGVVAETFLPELLSAGDVV*AALHLI
Trigger: GATGAGGTGGAGTGCAGCGCAGACCACATCGCCCGC...AGAAAGCAGCTCTGGCAGGAAAGTTTCAGCTACTACACCGAGAAATGATGTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR GCA 90 bp CCCTTCCGTGGTTTGGTTTGCCGAGCTATTCCTACAGCCTCTGTTGTAAGTCATATGTCCTGCAGCTGTTaGGTGATGTGGTGCTGCAGC +
Preference number: 4 (lower is better)
Translates to: PFRGLVCRAIPTASVVSHMSCSC*VMWCCS
Trigger: GCTGCAGCACCACATCACGCAACAGCTGCAGGACAT...ATGACTTACAACAGAGGCTGTAGGAATAGCTCGGCAAACCAAACCACGGAAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR GCA 90 bp CGGTCCCGCCCTGCTCGTAGGCACCCCAGTTTTCTTCCCTTCTGTCCTCCTAGTAAGAAACTGAGTGATTaGTTCCGCTACTTCTTCGTT +
Preference number: 4 (lower is better)
Translates to: RSRPARRHPSFLPFCPPSKKLSD*FRYFFV
Trigger: AACGAAGAAGTAGCGGAAGCAATCACTCAGTTTCTT...ACTAGGAGGACAGAAGGGAAGAAAACTGGGGTGCCTACGAGCAGGGCGGGACCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000162969.2
CDS-3UTR GCA 90 bp TCCTCTGAGGCTATTAGGGCAAGCAAGTCCAGCTGGAAGTCAGACAGGCATGATAGTAGTGGCAGGAGATaGCTTCGGACTCAGAGTTCT +
Preference number: 4 (lower is better)
Translates to: SSEAIRASKSSWKSDRHDSSGRR*LRTQSS
Trigger: AGAACTCTGAGTCCGAAGGCATCTCCTGCCACTACT...ATCATGCCTGTCTGACTTCCAGCTGGACTTGCTTGCCCTAATAGCCTCAGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR CCA 90 bp GAAACTTTCCTGCCAGAGCTGCTTTCTTCTAGGGCTTCCAGTTTCCCAGGGGGCAGTCATCATCCTCAATaGTTTTGTATGCCCAGCCTG +
Preference number: 4 (lower is better)
Translates to: ETFLPELLSSRASSFPGGSHHPQ*FCMPSL
Trigger: CAGGCTGGGCATACAAAACCATTGAGGATGATGACT...GCCCCCTGGGAAACTGGAAGCCCTAGAAGAAAGCAGCTCTGGCAGGAAAGTTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR GCA 90 bp ACAGAGTTAAACCCAAAGCACAGAGCAATATCAGTGCTGGGCAGATCTGCCATGAGCATTAATAACCTCTaGGTAGCCAGTGGCCCAGGG +
Preference number: 4 (lower is better)
Translates to: TELNPKHRAISVLGRSAMSINNL*VASGPG
Trigger: CCCTGGGCCACTGGCTACGCAGAGGTTATTAATGCT...CATGGCAGATCTGCCCAGCACTGATATTGCTCTGTGCTTTGGGTTTAACTCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR GCA 90 bp CACTCCAGTTCTGACTCTGGTGGCTTAAATATGATTGGAGAAGGTCAAGGTGAGATGTCCTGCAGCTGTTaGGTGATGTGGTGCTGCAGC +
Preference number: 4 (lower is better)
Translates to: HSSSDSGGLNMIGEGQGEMSCSC*VMWCCS
Trigger: GCTGCAGCACCACATCACGCAACAGCTGCAGGACAT...CTCACCTTGACCTTCTCCAATCATATTTAAGCCACCAGAGTCAGAACTGGAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR CCA 90 bp CACTCCAGTTCTGACTCTGGTGGCTTAAATATGATTGGAGAAGGTCAAGGTGAGTCATTTCCCAGCAAGTaGGGCTGCATGAACGCCAGG +
Preference number: 4 (lower is better)
Translates to: HSSSDSGGLNMIGEGQGESFPSK*GCMNAR
Trigger: CCTGGCGTTCATGCAGCCCCACTTGCTGGGAAATGA...CTCACCTTGACCTTCTCCAATCATATTTAAGCCACCAGAGTCAGAACTGGAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR CCA 90 bp CCATCTAGGGGCATGATTTCCTTCAAGAAAGTGACTTTCAGGGGCGAGTGGTGGCCGCTACTTCTTCGTTaGATAAGACATCCCAGAGTC +
Preference number: 4 (lower is better)
Translates to: PSRGMISFKKVTFRGEWWPLLLR*IRHPRV
Trigger: GACTCTGGGATGTCTTATCCAACGAAGAAGTAGCGG...CCACCACTCGCCCCTGAAAGTCACTTTCTTGAAGGAAATCATGCCCCTAGATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR TCA 90 bp GAGGGAGCACCACCCATTCCAGAAATAAAACCCAGCCTCTCACAGCTAAACCTCTCTGACCTCTGGAGCTaGAGACAGGAATGGTTTTAT +
Preference number: 4 (lower is better)
Translates to: EGAPPIPEIKPSLSQLNLSDLWS*RQEWFY
Trigger: ATAAAACCATTCCTGTCTTCAGCTCCAGAGGTCAGA...GAGGTTTAGCTGTGAGAGGCTGGGTTTTATTTCTGGAATGGGTGGTGCTCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR GCA 90 bp CATACTACCATTCCTGGCTCAGTCTTGACCATGTTTTCAAAGCTCTTAAAATGCTGTTGCGTGATGTGGTaGTGCAGCAGGCGCGATGCC +
Preference number: 4 (lower is better)
Translates to: HTTIPGSVLTMFSKLLKCCCVMW*CSRRDA
Trigger: GGCATCGCGCCTGCTGCAGCACCACATCACGCAACA...GCATTTTAAGAGCTTTGAAAACATGGTCAAGACTGAGCCAGGAATGGTAGTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR CCA 90 bp CTTATTCAGTGTCCAGACTTGTTACCAAAGAAGAAGTGGAAACCTAAGGGTCACAGCTGTTGCGTGATGTaGTGCTGCAGCAGGCGCGAT +
Preference number: 4 (lower is better)
Translates to: LIQCPDLLPKKKWKPKGHSCCVM*CCSRRD
Trigger: ATCGCGCCTGCTGCAGCACCACATCACGCAACAGCT...GTGACCCTTAGGTTTCCACTTCTTCTTTGGTAACAAGTCTGGACACTGAATAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR CCA 90 bp GAGGGAGCACCACCCATTCCAGAAATAAAACCCAGCCTCTCACAGCTAAACCTCTCTGTGAGGGTCGTCTaGATCACAGTTAGGAAGAAA +
Preference number: 4 (lower is better)
Translates to: EGAPPIPEIKPSLSQLNLSVRVV*ITVRKK
Trigger: TTTCTTCCTAACTGTGATCCAGACGACCCTCACAGA...GAGGTTTAGCTGTGAGAGGCTGGGTTTTATTTCTGGAATGGGTGGTGCTCCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR TCA 90 bp CCATCTAGGGGCATGATTTCCTTCAAGAAAGTGACTTTCAGGGGCGAGTGGTGGGAAACTCCAAATGTGTaGACTCATTTCCCAGCAAGT +
Preference number: 4 (lower is better)
Translates to: PSRGMISFKKVTFRGEWWETPNV*THFPAS
Trigger: ACTTGCTGGGAAATGAGTTCACACATTTGGAGTTTC...CCACCACTCGCCCCTGAAAGTCACTTTCTTGAAGGAAATCATGCCCCTAGATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR TCA 90 bp CCCTTCCGTGGTTTGGTTTGCCGAGCTATTCCTACAGCCTCTGTTGTAAGTCATCAGTTAGGAAGAAACTaGGTGATTGCTTCCGCTACT +
Preference number: 4 (lower is better)
Translates to: PFRGLVCRAIPTASVVSHQLGRN*VIASAT
Trigger: AGTAGCGGAAGCAATCACTCAGTTTCTTCCTAACTG...ATGACTTACAACAGAGGCTGTAGGAATAGCTCGGCAAACCAAACCACGGAAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR TCA 90 bp CTTATTCAGTGTCCAGACTTGTTACCAAAGAAGAAGTGGAAACCTAAGGGTCACGCCAGTGTGTATCTGTaGGGGTCGTCTGGATCACAG +
Preference number: 4 (lower is better)
Translates to: LIQCPDLLPKKKWKPKGHASVYL*GSSGSQ
Trigger: CTGTGATCCAGACGACCCTCACAGATACACACTGGC...GTGACCCTTAGGTTTCCACTTCTTCTTTGGTAACAAGTCTGGACACTGAATAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR TCA 90 bp AGCTGCCCTGGAGGTACTGACTCACTGAAATTAGAATCTCATCACAGCATAACGAGAAATGTCATCTCCTaGGCCCAGTCGGTCATTCGA +
Preference number: 4 (lower is better)
Translates to: SCPGGTDSLKLESHHSITRNVIS*AQSVIR
Trigger: TCGAATGACCGACTGGGCTCAGGAGATGACATTTCT...CGTTATGCTGTGATGAGATTCTAATTTCAGTGAGTCAGTACCTCCAGGGCAGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR GCA 90 bp CCGTGGTCCTCAACTTTTCAATGTGGCTCTTCTCCCAGAGAGATGCTGGCAGCTAAGAAACTGAGTGATTaGTTCCGCTACTTCTTCGTT +
Preference number: 4 (lower is better)
Translates to: PWSSTFQCGSSPREMLAAKKLSD*FRYFFV
Trigger: AACGAAGAAGTAGCGGAAGCAATCACTCAGTTTCTT...AGCTGCCAGCATCTCTCTGGGAGAAGAGCCACATTGAAAAGTTGAGGACCACGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR GCA 90 bp AACACATCATTTCTCGGTGTAGTAGCTGAAACTTTCCTGCCAGAGCTGCTTTCTATGACCAGACACTCGTaGGGGATCTTCTTCTCAGTG +
Preference number: 4 (lower is better)
Translates to: NTSFLGVVAETFLPELLSMTRHS*GIFFSV
Trigger: CACTGAGAAGAAGATCCCGCACGAGTGTCTGGTCAT...AGAAAGCAGCTCTGGCAGGAAAGTTTCAGCTACTACACCGAGAAATGATGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR GCA 90 bp AGCTGCCCTGGAGGTACTGACTCACTGAAATTAGAATCTCATCACAGCATAACGCGTCACTCCAATAGTTaGCATTACTCGGGCCTTCTT +
Preference number: 4 (lower is better)
Translates to: SCPGGTDSLKLESHHSITRHSNS*HYSGLL
Trigger: AAGAAGGCCCGAGTAATGGCAACTATTGGAGTGACG...CGTTATGCTGTGATGAGATTCTAATTTCAGTGAGTCAGTACCTCCAGGGCAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CAA 72 bp TCAACACTTTCTCAAATTTCCCATTTGTGTGTGACTTaGAGAACTGGGCGATGGTGGGAAGACCACCATGCG +
Preference number: 4 (lower is better)
Translates to: STLSQISHLCVT*RTGRWWEDHHA
Trigger: CGCATGGTGGTCTTCCCACCATCGCCCAGTTCTCAAAGTCACACACAAATGGGAAATTTGAGAAAGTGTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR GCA 90 bp CCCTTCCGTGGTTTGGTTTGCCGAGCTATTCCTACAGCCTCTGTTGTAAGTCATAAGAAACTGAGTGATTaGTTCCGCTACTTCTTCGTT +
Preference number: 4 (lower is better)
Translates to: PFRGLVCRAIPTASVVSHKKLSD*FRYFFV
Trigger: AACGAAGAAGTAGCGGAAGCAATCACTCAGTTTCTT...ATGACTTACAACAGAGGCTGTAGGAATAGCTCGGCAAACCAAACCACGGAAGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR TCA 90 bp ATACTTATTTATATTTTTGCTAACAAATCCAGCACGGGCATGTTTGTCAGGCCGAAAGGCACAAACCTGTaGGGGTCGTCTGGATCACAG +
Preference number: 4 (lower is better)
Translates to: ILIYIFANKSSTGMFVRPKGTNL*GSSGSQ
Trigger: CTGTGATCCAGACGACCCTCACAGGTTTGTGCCTTT...CGGCCTGACAAACATGCCCGTGCTGGATTTGTTAGCAAAAATATAAATAAGTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR CAA 72 bp CAGGCTTTGTGTTTGGCTCTTATTCAGTGTCCAGACTaGTTACCAAAGAAGAAGTGGAAACCTAAGGGTCAC +
Preference number: 4 (lower is better)
Translates to: QALCLALIQCPD*LPKKKWKPKGH
Trigger: GTGACCCTTAGGTTTCCACTTCTTCTTTGGTAACAAGTCTGGACACTGAATAAGAGCCAAACACAAAGCCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CAA 72 bp CCTTCCTTGGGTTGGAAATGTCTGAATTATACCAAGTaGTCAGAAAGCCGATATCCTGGAAGACTACGGGAA +
Preference number: 4 (lower is better)
Translates to: PSLGWKCLNYTK*SESRYPGRLRE
Trigger: TTCCCGTAGTCTTCCAGGATATCGGCTTTCTGACAACTTGGTATAATTCAGACATTTCCAACCCAAGGAAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CAA 72 bp AAGAGCTGGGATTGCATCTTGGGGGAAATGACACCATaGGTTCCTTCCTTGGGTTGGAAATGTCTGAATTAT +
Preference number: 4 (lower is better)
Translates to: KSWDCILGEMTP*VPSLGWKCLNY
Trigger: ATAATTCAGACATTTCCAACCCAAGGAAGGAACCAATGGTGTCATTTCCCCCAAGATGCAATCCCAGCTCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CAA 72 bp ACACACCGAAATACATTTTGCAGAATTCTGAGTGTGTaGTTTCTTTGGCCTTCCCAGGAATTCTCCAAGGGC +
Preference number: 4 (lower is better)
Translates to: THRNTFCRILSV*FLWPSQEFSKG
Trigger: GCCCTTGGAGAATTCCTGGGAAGGCCAAAGAAACAACACACTCAGAATTCTGCAAAATGTATTTCGGTGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR CCA 90 bp CTTATTCAGTGTCCAGACTTGTTACCAAAGAAGAAGTGGAAACCTAAGGGTCACAGTCATCATCCTCAATaGTTTTGTATGCCCAGCCTG +
Preference number: 4 (lower is better)
Translates to: LIQCPDLLPKKKWKPKGHSHHPQ*FCMPSL
Trigger: CAGGCTGGGCATACAAAACCATTGAGGATGATGACT...GTGACCCTTAGGTTTCCACTTCTTCTTTGGTAACAAGTCTGGACACTGAATAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CAA 72 bp CTTGGGGGAAATGACACCATTGGTTCCTTCCTTGGGTaGGAAATGTCTGAATTATACCAAGTTGTCAGAAAG +
Preference number: 4 (lower is better)
Translates to: LGGNDTIGSFLG*EMSELYQVVRK
Trigger: CTTTCTGACAACTTGGTATAATTCAGACATTTCCAACCCAAGGAAGGAACCAATGGTGTCATTTCCCCCAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CAA 72 bp TGCATCTTGGGGGAAATGACACCATTGGTTCCTTCCTaGGGTTGGAAATGTCTGAATTATACCAAGTTGTCA +
Preference number: 4 (lower is better)
Translates to: CILGEMTPLVPS*GWKCLNYTKLS
Trigger: TGACAACTTGGTATAATTCAGACATTTCCAACCCAAGGAAGGAACCAATGGTGTCATTTCCCCCAAGATGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CAA 72 bp CAGATTTGGTTTGACAATGGAAGAATTGGGAGAATGTaGCCACTGGCACCTACAGGATATTTACACTCCAGT +
Preference number: 4 (lower is better)
Translates to: QIWFDNGRIGRM*PLAPTGYLHSS
Trigger: ACTGGAGTGTAAATATCCTGTAGGTGCCAGTGGCAACATTCTCCCAATTCTTCCATTGTCAAACCAAATCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
3UTR CAA 72 bp TTGGAAACCCAGATCACCATATACATATTCTTACAATaGATCCTTAGTAGGCGCCTCCTGGGGTTTCCAAAG +
Preference number: 4 (lower is better)
Translates to: LETQITIYIFLQ*ILSRRLLGFPK
Trigger: CTTTGGAAACCCCAGGAGGCGCCTACTAAGGATCAATTGTAAGAATATGTATATGGTGATCTGGGTTTCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR CCA 90 bp TTCTTTGTCATCTGTATCTTGGTTCACCTTAAGGAGGATTTTCACATGGTCACACCGCTACTTCTTCGTTaGATAAGACATCCCAGAGTC +
Preference number: 4 (lower is better)
Translates to: FFVICILVHLKEDFHMVTPLLLR*IRHPRV
Trigger: GACTCTGGGATGTCTTATCCAACGAAGAAGTAGCGG...TGTGACCATGTGAAAATCCTCCTTAAGGTGAACCAAGATACAGATGACAAAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR CAA 72 bp AAATTCACTTTAATTCAAGTGTCATCCCAGATACCCTaGCACAAAGGTGACAGGAAGAGAGTAGTCACTGCT +
Preference number: 4 (lower is better)
Translates to: KFTLIQVSSQIP*HKGDRKRVVTA
Trigger: AGCAGTGACTACTCTCTTCCTGTCACCTTTGTGCAAGGGTATCTGGGATGACACTTGAATTAAAGTGAATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR GCA 90 bp CTGTTGGTGTTAGAGGAACAAAGCTTTAGTTGTCACTTAGGAAGACGCTTCAGGCTCAATGGTTTTGTATaGCCAGCCTGTCATATTAAA +
Preference number: 4 (lower is better)
Translates to: LLVLEEQSFSCHLGRRFRLNGFV*PACHIK
Trigger: TTTAATATGACAGGCTGGGCATACAAAACCATTGAG...CCTGAAGCGTCTTCCTAAGTGACAACTAAAGCTTTGTTCCTCTAACACCAACAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR GCA 90 bp AACACATCATTTCTCGGTGTAGTAGCTGAAACTTTCCTGCCAGAGCTGCTTTCTCTCAATGGTTTTGTATaGCCAGCCTGTCATATTAAA +
Preference number: 4 (lower is better)
Translates to: NTSFLGVVAETFLPELLSLNGFV*PACHIK
Trigger: TTTAATATGACAGGCTGGGCATACAAAACCATTGAG...AGAAAGCAGCTCTGGCAGGAAAGTTTCAGCTACTACACCGAGAAATGATGTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR TCA 90 bp TTCTTTGTCATCTGTATCTTGGTTCACCTTAAGGAGGATTTTCACATGGTCACAGAAACTCCAAATGTGTaGACTCATTTCCCAGCAAGT +
Preference number: 4 (lower is better)
Translates to: FFVICILVHLKEDFHMVTETPNV*THFPAS
Trigger: ACTTGCTGGGAAATGAGTTCACACATTTGGAGTTTC...TGTGACCATGTGAAAATCCTCCTTAAGGTGAACCAAGATACAGATGACAAAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR CAA 72 bp GCATTAAAGTCACATACTACCATTCCTGGCTCAGTCTaGACCATGTTTTCAAAGCTCTTAAAATGCTCCGAT +
Preference number: 4 (lower is better)
Translates to: ALKSHTTIPGSV*TMFSKLLKCSD
Trigger: ATCGGAGCATTTTAAGAGCTTTGAAAACATGGTCAAGACTGAGCCAGGAATGGTAGTATGTGACTTTAATGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
3UTR CAA 72 bp TTGTTTGTTTGTTTGTTTAAGATTTTGATTTATTTTTaGCAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTC +
Preference number: 4 (lower is better)
Translates to: LFVCLFKILIYF*QTGFLCVALAV
Trigger: GACAGCCAGGGCTACACAGAGAAACCCTGTCTGCAAAAAATAAATCAAAATCTTAAACAAACAAACAAACAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS GCA 90 bp GGGAAGCGCAGGGGCAGGTCCGAGCCTCCGCAGCCGCTCCCGCCGTaGTCGGAGCCGGAGCTGCCAGCCATGATGCCGCCCATGAAATTG +
Preference number: 5 (lower is better)
Translates to: GKRRGRSEPPQPLPP*SEPELPAMMPPMKL
Trigger: CAATTTCATGGGCGGCATCATGGCTGGCAGCTCCGGCTCCGAGCACGGCGGGAGCGGCTGCGGAGGCTCGGACCTGCCCCTGCGCTTCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS TCA 90 bp AGGATGGGGCGGGCGATGTGGTCTGCGCTGCACTCCACCTCATCCTaGGACAGCCCGAGGAACTCCGGCCGCCCGTACGGGAAGCGCAGG +
Preference number: 5 (lower is better)
Translates to: RMGRAMWSALHSTSS*DSPRNSGRPYGKRR
Trigger: CCTGCGCTTCCCGTACGGGCGGCCGGAGTTCCTCGGGCTGTCTCAGGATGAGGTGGAGTGCAGCGCAGACCACATCGCCCGCCCCATCCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS GCA 90 bp GATGTCCTGCAGCTGTTGCGTGATGTGGTGCTGCAGCAGGCGCGATaGCACCACGGCAGCCCCCGAGCCTGCGTGACCGTCAAACAGGGA +
Preference number: 5 (lower is better)
Translates to: DVLQLLRDVVLQQAR*HHGSPRACVTVKQG
Trigger: TCCCTGTTTGACGGTCACGCAGGCTCGGGGGCTGCCGTGGTGGCATCGCGCCTGCTGCAGCACCACATCACGCAACAGCTGCAGGACATC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS TCA 90 bp TGGCCGAGTTCTTCAGGATCTCCACGATGTCCTGCAGCTGTTGCGTaGTGTGGTGCTGCAGCAGGCGCGATGCCACCACGGCAGCCCCCG +
Preference number: 5 (lower is better)
Translates to: WPSSSGSPRCPAAVA*CGAAAGAMPPRQPP
Trigger: CGGGGGCTGCCGTGGTGGCATCGCGCCTGCTGCAGCACCACATCACGCAACAGCTGCAGGACATCGTGGAGATCCTGAAGAACTCGGCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS GCA 90 bp TTCTTCAGGATCTCCACGATGTCCTGCAGCTGTTGCGTGATGTGGTaGTGCAGCAGGCGCGATGCCACCACGGCAGCCCCCGAGCCTGCG +
Preference number: 5 (lower is better)
Translates to: FFRISTMSCSCCVMW*CSRRDATTAAPEPA
Trigger: CGCAGGCTCGGGGGCTGCCGTGGTGGCATCGCGCCTGCTGCAGCACCACATCACGCAACAGCTGCAGGACATCGTGGAGATCCTGAAGAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS CCA 90 bp GAGTTCTTCAGGATCTCCACGATGTCCTGCAGCTGTTGCGTGATGTaGTGCTGCAGCAGGCGCGATGCCACCACGGCAGCCCCCGAGCCT +
Preference number: 5 (lower is better)
Translates to: EFFRISTMSCSCCVM*CCSRRDATTAAPEP
Trigger: AGGCTCGGGGGCTGCCGTGGTGGCATCGCGCCTGCTGCAGCACCACATCACGCAACAGCTGCAGGACATCGTGGAGATCCTGAAGAACTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS GCA 90 bp AGGATGGCCGAGTTCTTCAGGATCTCCACGATGTCCTGCAGCTGTTaGGTGATGTGGTGCTGCAGCAGGCGCGATGCCACCACGGCAGCC +
Preference number: 5 (lower is better)
Translates to: RMAEFFRISTMSCSC*VMWCCSRRDATTAA
Trigger: GGCTGCCGTGGTGGCATCGCGCCTGCTGCAGCACCACATCACGCAACAGCTGCAGGACATCGTGGAGATCCTGAAGAACTCGGCCATCCT
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS GCA 90 bp GTCGGGGGAAGGATGGCCGAGTTCTTCAGGATCTCCACGATGTCCTaGAGCTGTTGCGTGATGTGGTGCTGCAGCAGGCGCGATGCCACC +
Preference number: 5 (lower is better)
Translates to: VGGRMAEFFRISTMS*SCCVMWCCSRRDAT
Trigger: GGTGGCATCGCGCCTGCTGCAGCACCACATCACGCAACAGCTGCAGGACATCGTGGAGATCCTGAAGAACTCGGCCATCCTTCCCCCGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS-3UTR CAA 90 bp TGCTTTCTTCTAGGGCTTCCAGTTTCCCAGGGGGCTGTGAGGGCTATCTACCCTAGCCGCCGGGTCTCCTaGAGGATGAGGATGGGGCGG +
Preference number: 5 (lower is better)
Translates to: CFLLGLPVSQGAVRAIYPSRRVS*RMRMGR
Trigger: CCGCCCCATCCTCATCCTCAAGGAGACCCGGCGGCT...AGGGTAGATAGCCCTCACAGCCCCCTGGGAAACTGGAAGCCCTAGAAGAAAGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR CAA 90 bp CCCGGTCCCGCCCTGCTCGTAGGCACCCCAGTTTTCTTCCCTTCTGTCCTCCTACACCTCGCAGCTGGCTaGGTCCTCATTGTGTGTGCT +
Preference number: 5 (lower is better)
Translates to: PGPALLVGTPVFFPSVLLHLAAG*VLIVCA
Trigger: AGCACACACAATGAGGACCAAGCCAGCTGCGAGGTG...TAGGAGGACAGAAGGGAAGAAAACTGGGGTGCCTACGAGCAGGGCGGGACCGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS TCA 90 bp CGCCAGCATTCGCCACATAGAGCTTCCCCAAGAGGCAAACCACGATaGGGGCCGTGCAGCCGCCAGATATATTATACGCACTCCTCTCGC +
Preference number: 5 (lower is better)
Translates to: RQHSPHRASPRGKPR*GPCSRQIYYTHSSR
Trigger: GCGAGAGGAGTGCGTATAATATATCTGGCGGCTGCACGGCCCTCATCGTGGTTTGCCTCTTGGGGAAGCTCTATGTGGCGAATGCTGGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS GCA 90 bp ATTTCCTTGAAAGCGCTCTCCAGGGCCCCGATGACCAGACACTCGTaGGGGATCTTCTTCTCAGTGAAGAAGCGCGTGGGTGGCGTACTG +
Preference number: 5 (lower is better)
Translates to: ISLKALSRAPMTRHS*GIFFSVKKRVGGVL
Trigger: CAGTACGCCACCCACGCGCTTCTTCACTGAGAAGAAGATCCCGCACGAGTGTCTGGTCATCGGGGCCCTGGAGAGCGCTTTCAAGGAAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS-3UTR CAA 90 bp CCCGCCCTGCTCGTAGGCACCCCAGTTTTCTTCCCTTCTGTCCTCCTAGTCCCCTCCGCTACTTCTTCGTaGGATAAGACATCCCAGAGT +
Preference number: 5 (lower is better)
Translates to: PALLVGTPVFFPSVLLVPSATSS*DKTSQS
Trigger: ACTCTGGGATGTCTTATCCAACGAAGAAGTAGCGGA...GGGGACTAGGAGGACAGAAGGGAAGAAAACTGGGGTGCCTACGAGCAGGGCGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000162969.2
CDS-3UTR CAA 90 bp AGCTGCCCTGGAGGTACTGACTCACTGAAATTAGAATCTCATCACAGCATAACGAGCCGCCGGGTCTCCTaGAGGATGAGGATGGGGCGG +
Preference number: 5 (lower is better)
Translates to: SCPGGTDSLKLESHHSITSRRVS*RMRMGR
Trigger: CCGCCCCATCCTCATCCTCAAGGAGACCCGGCGGCT...CGTTATGCTGTGATGAGATTCTAATTTCAGTGAGTCAGTACCTCCAGGGCAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS CCA 90 bp TGCCTTCGGACTCAGAGTTCTCCTTTAACTGCAGGCCTTCCCCGTTaGGAAGTGATGACCTTCTCTTGGAGTTTCTGTTCGGGGTGGAAG +
Preference number: 5 (lower is better)
Translates to: CLRTQSSPLTAGLPR*EVMTFSWSFCSGWK
Trigger: CTTCCACCCCGAACAGAAACTCCAAGAGAAGGTCATCACTTCCCAACGGGGAAGGCCTGCAGTTAAAGGAGAACTCTGAGTCCGAAGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS-3UTR CAA 90 bp GAAGAAGTGCCCCTCCCTTCTCCCCTGGGAAGGAATTCTCGTAAACACAAGAGCATGCCGCCCATGAAATaGGCCACGGCAGATTTCACT +
Preference number: 5 (lower is better)
Translates to: EEVPLPSPLGRNSRKHKSMPPMK*ATADFT
Trigger: AGTGAAATCTGCCGTGGCCAATTTCATGGGCGGCAT...GCTCTTGTGTTTACGAGAATTCCTTCCCAGGGGAGAAGGGAGGGGCACTTCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR CAA 90 bp GGGAACATGAGAACGAGGAAGCCGTGGTGGCTCACACCGAAATCCCAGAACTGCTCATCCTCAATGGTTTaGTATGCCCAGCCTGTCATA +
Preference number: 5 (lower is better)
Translates to: GNMRTRKPWWLTPKSQNCSSSMV*YAQPVI
Trigger: TATGACAGGCTGGGCATACAAAACCATTGAGGATGA...GCAGTTCTGGGATTTCGGTGTGAGCCACCACGGCTTCCTCGTTCTCATGTTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR CAA 90 bp AGCTGCTTTCTTCTAGGGCTTCCAGTTTCCCAGGGGGCTGTGAGGGCTATCTACTCCGCTACTTCTTCGTaGGATAAGACATCCCAGAGT +
Preference number: 5 (lower is better)
Translates to: SCFLLGLPVSQGAVRAIYSATSS*DKTSQS
Trigger: ACTCTGGGATGTCTTATCCAACGAAGAAGTAGCGGA...GTAGATAGCCCTCACAGCCCCCTGGGAAACTGGAAGCCCTAGAAGAAAGCAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR CAA 90 bp AGCTGCCCTGGAGGTACTGACTCACTGAAATTAGAATCTCATCACAGCATAACGGATGTCCTGCAGCTGTaGCGTGATGTGGTGCTGCAG +
Preference number: 5 (lower is better)
Translates to: SCPGGTDSLKLESHHSITDVLQL*RDVVLQ
Trigger: CTGCAGCACCACATCACGCAACAGCTGCAGGACATC...CGTTATGCTGTGATGAGATTCTAATTTCAGTGAGTCAGTACCTCCAGGGCAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR CAA 90 bp AGCTGCTTTCTTCTAGGGCTTCCAGTTTCCCAGGGGGCTGTGAGGGCTATCTACATTACTCGGGCCTTCTaGCCTTCTCCATATATAAGG +
Preference number: 5 (lower is better)
Translates to: SCFLLGLPVSQGAVRAIYITRAF*PSPYIR
Trigger: CCTTATATATGGAGAAGGCAAGAAGGCCCGAGTAAT...GTAGATAGCCCTCACAGCCCCCTGGGAAACTGGAAGCCCTAGAAGAAAGCAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR CAA 90 bp CAGGACACAGAAGGTGAGGGAGCACCACCCATTCCAGAAATAAAACCCAGCCTCTCATCCTCAATGGTTTaGTATGCCCAGCCTGTCATA +
Preference number: 5 (lower is better)
Translates to: QDTEGEGAPPIPEIKPSLSSSMV*YAQPVI
Trigger: TATGACAGGCTGGGCATACAAAACCATTGAGGATGA...GAGGCTGGGTTTTATTTCTGGAATGGGTGGTGCTCCCTCACCTTCTGTGTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS-3UTR CAA 90 bp CATACTACCATTCCTGGCTCAGTCTTGACCATGTTTTCAAAGCTCTTAAAATGCGATGTCCTGCAGCTGTaGCGTGATGTGGTGCTGCAG +
Preference number: 5 (lower is better)
Translates to: HTTIPGSVLTMFSKLLKCDVLQL*RDVVLQ
Trigger: CTGCAGCACCACATCACGCAACAGCTGCAGGACATC...GCATTTTAAGAGCTTTGAAAACATGGTCAAGACTGAGCCAGGAATGGTAGTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR CAA 90 bp ACAGAGTTAAACCCAAAGCACAGAGCAATATCAGTGCTGGGCAGATCTGCCATGTCCGCTACTTCTTCGTaGGATAAGACATCCCAGAGT +
Preference number: 5 (lower is better)
Translates to: TELNPKHRAISVLGRSAMSATSS*DKTSQS
Trigger: ACTCTGGGATGTCTTATCCAACGAAGAAGTAGCGGA...CATGGCAGATCTGCCCAGCACTGATATTGCTCTGTGCTTTGGGTTTAACTCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS TCA 90 bp TCCGTGCTCATATCTGGAGAGATCGTAGACTCTGACCTCTGGAGCTaGAGACAGGAATGGTTTTATGTAGATGTTGGAGTCATGAACCTT +
Preference number: 5 (lower is better)
Translates to: SVLISGEIVDSDLWS*RQEWFYVDVGVMNL
Trigger: AAGGTTCATGACTCCAACATCTACATAAAACCATTCCTGTCTTCAGCTCCAGAGGTCAGAGTCTACGATCTCTCCAGATATGAGCACGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
ENSMUST00000162969.2
CDS-3UTR CAA 90 bp CATACTACCATTCCTGGCTCAGTCTTGACCATGTTTTCAAAGCTCTTAAAATGCATGCCGCCCATGAAATaGGCCACGGCAGATTTCACT +
Preference number: 5 (lower is better)
Translates to: HTTIPGSVLTMFSKLLKCMPPMK*ATADFT
Trigger: AGTGAAATCTGCCGTGGCCAATTTCATGGGCGGCAT...GCATTTTAAGAGCTTTGAAAACATGGTCAAGACTGAGCCAGGAATGGTAGTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000161487.8
CDS-3UTR CAA 90 bp CTTATTCAGTGTCCAGACTTGTTACCAAAGAAGAAGTGGAAACCTAAGGGTCACATTACTCGGGCCTTCTaGCCTTCTCCATATATAAGG +
Preference number: 5 (lower is better)
Translates to: LIQCPDLLPKKKWKPKGHITRAF*PSPYIR
Trigger: CCTTATATATGGAGAAGGCAAGAAGGCCCGAGTAAT...GTGACCCTTAGGTTTCCACTTCTTCTTTGGTAACAAGTCTGGACACTGAATAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067918.12
CDS GCA 72 bp AGGGGCAGGTCCGAGCCTCCGCAGCCGCTCCCGCCGTaGTCGGAGCCGGAGCTGCCAGCCATGATGCCGCCC +
Preference number: 6 (lower is better)
Translates to: RGRSEPPQPLPP*SEPELPAMMPP
Trigger: GGGCGGCATCATGGCTGGCAGCTCCGGCTCCGAGCACGGCGGGAGCGGCTGCGGAGGCTCGGACCTGCCCCT
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS TCA 72 bp CGGGCGATGTGGTCTGCGCTGCACTCCACCTCATCCTaGGACAGCCCGAGGAACTCCGGCCGCCCGTACGGG +
Preference number: 6 (lower is better)
Translates to: RAMWSALHSTSS*DSPRNSGRPYG
Trigger: CCCGTACGGGCGGCCGGAGTTCCTCGGGCTGTCTCAGGATGAGGTGGAGTGCAGCGCAGACCACATCGCCCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS GCA 72 bp CAGCTGTTGCGTGATGTGGTGCTGCAGCAGGCGCGATaGCACCACGGCAGCCCCCGAGCCTGCGTGACCGTC +
Preference number: 6 (lower is better)
Translates to: QLLRDVVLQQAR*HHGSPRACVTV
Trigger: GACGGTCACGCAGGCTCGGGGGCTGCCGTGGTGGCATCGCGCCTGCTGCAGCACCACATCACGCAACAGCTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS GCA 72 bp TCCACGATGTCCTGCAGCTGTTGCGTGATGTGGTGCTaGAGCAGGCGCGATGCCACCACGGCAGCCCCCGAG +
Preference number: 6 (lower is better)
Translates to: STMSCSCCVMWC*SRRDATTAAPE
Trigger: CTCGGGGGCTGCCGTGGTGGCATCGCGCCTGCTGCAGCACCACATCACGCAACAGCTGCAGGACATCGTGGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS CCA 72 bp GTGCGGGATCTTCTTCTCAGTGAAGAAGCGCGTGGGTaGCGTACTGGGGGAGCCCGGGGCACCCACACCTCC +
Preference number: 6 (lower is better)
Translates to: VRDLLLSEEARG*RTGGARGTHTS
Trigger: GGAGGTGTGGGTGCCCCGGGCTCCCCCAGTACGCCACCCACGCGCTTCTTCACTGAGAAGAAGATCCCGCAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS GCA 72 bp ATCTCCACGATGTCCTGCAGCTGTTGCGTGATGTGGTaGTGCAGCAGGCGCGATGCCACCACGGCAGCCCCC +
Preference number: 6 (lower is better)
Translates to: ISTMSCSCCVMW*CSRRDATTAAP
Trigger: GGGGGCTGCCGTGGTGGCATCGCGCCTGCTGCAGCACCACATCACGCAACAGCTGCAGGACATCGTGGAGAT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS CCA 72 bp AGGATCTCCACGATGTCCTGCAGCTGTTGCGTGATGTaGTGCTGCAGCAGGCGCGATGCCACCACGGCAGCC +
Preference number: 6 (lower is better)
Translates to: RISTMSCSCCVM*CCSRRDATTAA
Trigger: GGCTGCCGTGGTGGCATCGCGCCTGCTGCAGCACCACATCACGCAACAGCTGCAGGACATCGTGGAGATCCT
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS CAA 90 bp AAGGATGGCCGAGTTCTTCAGGATCTCCACGATGTCCTGCAGCTGTaGCGTGATGTGGTGCTGCAGCAGGCGCGATGCCACCACGGCAGC +
Preference number: 6 (lower is better)
Translates to: KDGRVLQDLHDVLQL*RDVVLQQARCHHGS
Trigger: GCTGCCGTGGTGGCATCGCGCCTGCTGCAGCACCACATCACGCAACAGCTGCAGGACATCGTGGAGATCCTGAAGAACTCGGCCATCCTT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS TCA 72 bp TCTTCAGGATCTCCACGATGTCCTGCAGCTGTTGCGTaGTGTGGTGCTGCAGCAGGCGCGATGCCACCACGG +
Preference number: 6 (lower is better)
Translates to: SSGSPRCPAAVA*CGAAAGAMPPR
Trigger: CCGTGGTGGCATCGCGCCTGCTGCAGCACCACATCACGCAACAGCTGCAGGACATCGTGGAGATCCTGAAGA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS GCA 72 bp AGGATGGCCGAGTTCTTCAGGATCTCCACGATGTCCTaGAGCTGTTGCGTGATGTGGTGCTGCAGCAGGCGC +
Preference number: 6 (lower is better)
Translates to: RMAEFFRISTMS*SCCVMWCCSRR
Trigger: GCGCCTGCTGCAGCACCACATCACGCAACAGCTGCAGGACATCGTGGAGATCCTGAAGAACTCGGCCATCCT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS GCA 72 bp AAAGCGCTCTCCAGGGCCCCGATGACCAGACACTCGTaGGGGATCTTCTTCTCAGTGAAGAAGCGCGTGGGT +
Preference number: 6 (lower is better)
Translates to: KALSRAPMTRHS*GIFFSVKKRVG
Trigger: ACCCACGCGCTTCTTCACTGAGAAGAAGATCCCGCACGAGTGTCTGGTCATCGGGGCCCTGGAGAGCGCTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS CAA 72 bp CGAGTTCTTCAGGATCTCCACGATGTCCTGCAGCTGTaGCGTGATGTGGTGCTGCAGCAGGCGCGATGCCAC +
Preference number: 6 (lower is better)
Translates to: RVLQDLHDVLQL*RDVVLQQARCH
Trigger: GTGGCATCGCGCCTGCTGCAGCACCACATCACGCAACAGCTGCAGGACATCGTGGAGATCCTGAAGAACTCG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS TCA 72 bp TCGCCACATAGAGCTTCCCCAAGAGGCAAACCACGATaGGGGCCGTGCAGCCGCCAGATATATTATACGCAC +
Preference number: 6 (lower is better)
Translates to: SPHRASPRGKPR*GPCSRQIYYTH
Trigger: GTGCGTATAATATATCTGGCGGCTGCACGGCCCTCATCGTGGTTTGCCTCTTGGGGAAGCTCTATGTGGCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS GCA 72 bp CGTGACCGTCAAACAGGGACCAGTAGTGGCAGGAGATaGCTTCGGACTCAGAGTTCTCCTTTAACTGCAGGC +
Preference number: 6 (lower is better)
Translates to: RDRQTGTSSGRR*LRTQSSPLTAG
Trigger: GCCTGCAGTTAAAGGAGAACTCTGAGTCCGAAGGCATCTCCTGCCACTACTGGTCCCTGTTTGACGGTCACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS CAA 90 bp ATGCCTTCGGACTCAGAGTTCTCCTTTAACTGCAGGCCTTCCCCGTaGGGAAGTGATGACCTTCTCTTGGAGTTTCTGTTCGGGGTGGAA +
Preference number: 6 (lower is better)
Translates to: MPSDSEFSFNCRPSP*GSDDLLLEFLFGVE
Trigger: TTCCACCCCGAACAGAAACTCCAAGAGAAGGTCATCACTTCCCAACGGGGAAGGCCTGCAGTTAAAGGAGAACTCTGAGTCCGAAGGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS CAA 90 bp TCCTTTAACTGCAGGCCTTCCCCGTTGGGAAGTGATGACCTTCTCTaGGAGTTTCTGTTCGGGGTGGAAGTAATGGTTCCGGCTTTCTTC +
Preference number: 6 (lower is better)
Translates to: SFNCRPSPLGSDDLL*EFLFGVEVMVPAFF
Trigger: GAAGAAAGCCGGAACCATTACTTCCACCCCGAACAGAAACTCCAAGAGAAGGTCATCACTTCCCAACGGGGAAGGCCTGCAGTTAAAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS GCA 72 bp GTCATGGTCCCCAAGTCCCCTCGTCACTCCAATAGTTaGCATTACTCGGGCCTTCTTGCCTTCTCCATATAT +
Preference number: 6 (lower is better)
Translates to: VMVPKSPRHSNS*HYSGLLAFSIY
Trigger: ATATATGGAGAAGGCAAGAAGGCCCGAGTAATGGCAACTATTGGAGTGACGAGGGGACTTGGGGACCATGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS CCA 72 bp GTCCTGAGCCGCCAGTGTGTATCTGTGAGGGTCGTCTaGATCACAGTTAGGAAGAAACTGAGTGATTGCTTC +
Preference number: 6 (lower is better)
Translates to: VLSRQCVSVRVV*ITVRKKLSDCF
Trigger: GAAGCAATCACTCAGTTTCTTCCTAACTGTGATCCAGACGACCCTCACAGATACACACTGGCGGCTCAGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000162969.2
CDS TCA 72 bp CCAGATATATTATACGCACTCCTCTCGCGTTCGATTTaGAGGTCCATTTCCTTGAAAGCGCTCTCCAGGGCC +
Preference number: 6 (lower is better)
Translates to: PDILYALLSRSI*RSISLKALSRA
Trigger: GGCCCTGGAGAGCGCTTTCAAGGAAATGGACCTTCAAATCGAACGCGAGAGGAGTGCGTATAATATATCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS CCA 72 bp ACTCAGAGTTCTCCTTTAACTGCAGGCCTTCCCCGTTaGGAAGTGATGACCTTCTCTTGGAGTTTCTGTTCG +
Preference number: 6 (lower is better)
Translates to: TQSSPLTAGLPR*EVMTFSWSFCS
Trigger: CGAACAGAAACTCCAAGAGAAGGTCATCACTTCCCAACGGGGAAGGCCTGCAGTTAAAGGAGAACTCTGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS CAA 72 bp GCCAGATATATTATACGCACTCCTCTCGCGTTCGATTaGAAGGTCCATTTCCTTGAAAGCGCTCTCCAGGGC +
Preference number: 6 (lower is better)
Translates to: ARYIIRTPLAFD*KVHFLESALQG
Trigger: GCCCTGGAGAGCGCTTTCAAGGAAATGGACCTTCAAATCGAACGCGAGAGGAGTGCGTATAATATATCTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
CDS TCA 72 bp ATATCTGGAGAGATCGTAGACTCTGACCTCTGGAGCTaGAGACAGGAATGGTTTTATGTAGATGTTGGAGTC +
Preference number: 6 (lower is better)
Translates to: ISGEIVDSDLWS*RQEWFYVDVGV
Trigger: GACTCCAACATCTACATAAAACCATTCCTGTCTTCAGCTCCAGAGGTCAGAGTCTACGATCTCTCCAGATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067918.12
ENSMUST00000161487.8
ENSMUST00000162969.2