Pregenerated sensors for PPIL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024007Ensembl transcript IDs: ENSMUST00000024802.10, ENSMUST00000135123.3
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CACCCTACGTCATCCGGAAACCAGCTCCCGGGGGCCTGGGAGTGCTaGGGACAGCATCCCACCTATCCAGAGGGGTACGCCTTAAGAATC | + |
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Preference number: 1 (lower is better) Translates to: HPTSSGNQLPGAWEC*GQHPTYPEGYALRI Trigger: GATTCTTAAGGCGTACCCCTCTGGATAGGTGGGATGCTGTCCCCAGCACTCCCAGGCCCCCGGGAGCTGGTTTCCGGATGACGTAGGGTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135123.3 |
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| 3UTR CCA 90 bp | GGCGCATGCTTCCAGTATAGCTCCAGGACAATGACTCCCATGCTGTaGTGGGGACAGAGCCTAGATCAGAGCAGGCGGCAGCCCCCAAGA | + |
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Preference number: 1 (lower is better) Translates to: GACFQYSSRTMTPML*WGQSLDQSRRQPPR Trigger: TCTTGGGGGCTGCCGCCTGCTCTGATCTAGGCTCTGTCCCCACCACAGCATGGGAGTCATTGTCCTGGAGCTATACTGGAAGCATGCGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135123.3 |
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| 3UTR CCA 90 bp | GATGCTCAGGCTCAGAGGGAAGAGCGAGTGAGCTGTGCATATTCCTaGAAGAACTCACGCTGGAGGCTGAACGGGGCTGTGAACAGGGGG | + |
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Preference number: 1 (lower is better) Translates to: DAQAQREERVSCAYS*KNSRWRLNGAVNRG Trigger: CCCCCTGTTCACAGCCCCGTTCAGCCTCCAGCGTGAGTTCTTCCAGGAATATGCACAGCTCACTCGCTCTTCCCTCTGAGCCTGAGCATC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR CCA 90 bp | GCATGCTTCCAGTATAGCTCCAGGACAATGACTCCCATGCTGTGGTaGGGACAGAGCCTAGATCAGAGCAGGCGGCAGCCCCCAAGACTC | + |
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Preference number: 1 (lower is better) Translates to: ACFQYSSRTMTPMLW*GQSLDQSRRQPPRL Trigger: GAGTCTTGGGGGCTGCCGCCTGCTCTGATCTAGGCTCTGTCCCCACCACAGCATGGGAGTCATTGTCCTGGAGCTATACTGGAAGCATGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000135123.3 |
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| 3UTR GCA 90 bp | GGAAAAATGGCCAAGGCTCCTTCCTGCTTCCTCTCAGAGATTCATTaGCCAATCATTACACATTATCATCCCCACTTGACACCTTCTCAG | + |
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Preference number: 1 (lower is better) Translates to: GKMAKAPSCFLSEIH*PIITHYHPHLTPSQ Trigger: CTGAGAAGGTGTCAAGTGGGGATGATAATGTGTAATGATTGGGCAATGAATCTCTGAGAGGAAGCAGGAAGGAGCCTTGGCCATTTTTCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR-3UTR CCA 90 bp | CCTACGTCATCCGGAAACCAGCTCCCGGGGGCCTGGGAGTGCTGGGGACAGCATCAGCTCCCGGGGGCCTaGGAGTGCTGGGGACAGCAT | + |
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Preference number: 2 (lower is better) Translates to: PTSSGNQLPGAWECWGQHQLPGA*ECWGQH Trigger: ATGCTGTCCCCAGCACTCCCAGGCCCCCGGGAGCTG...ATGCTGTCCCCAGCACTCCCAGGCCCCCGGGAGCTGGTTTCCGGATGACGTAGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR-3UTR CCA 90 bp | CCTACGTCATCCGGAAACCAGCTCCCGGGGGCCTGGGAGTGCTGGGGACAGCATATGACTCCCATGCTGTaGTGGGGACAGAGCCTAGAT | + |
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Preference number: 2 (lower is better) Translates to: PTSSGNQLPGAWECWGQHMTPML*WGQSLD Trigger: ATCTAGGCTCTGTCCCCACCACAGCATGGGAGTCAT...ATGCTGTCCCCAGCACTCCCAGGCCCCCGGGAGCTGGTTTCCGGATGACGTAGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000135123.3 |
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| 3UTR-3UTR CCA 90 bp | AAAGCCCTAAAGCATGTCACTTCCTGTGGGAAGCCTGTGACGGCCTTGTGCTCACAGCTCCCGGGGGCCTaGGAGTGCTGGGGACAGCAT | + |
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Preference number: 2 (lower is better) Translates to: KALKHVTSCGKPVTALCSQLPGA*ECWGQH Trigger: ATGCTGTCCCCAGCACTCCCAGGCCCCCGGGAGCTG...TGAGCACAAGGCCGTCACAGGCTTCCCACAGGAAGTGACATGCTTTAGGGCTTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR-3UTR CCA 90 bp | TCCTGGAAGAACTCACGCTGGAGGCTGAACGGGGCTGTGAACAGGGGGTGCGCAGCATGTCACTTCCTGTaGGAAGCCTGTGACGGCCTT | + |
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Preference number: 2 (lower is better) Translates to: SWKNSRWRLNGAVNRGCAACHFL*EACDGL Trigger: AAGGCCGTCACAGGCTTCCCACAGGAAGTGACATGC...TGCGCACCCCCTGTTCACAGCCCCGTTCAGCCTCCAGCGTGAGTTCTTCCAGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR-3UTR CCA 90 bp | CCTACGTCATCCGGAAACCAGCTCCCGGGGGCCTGGGAGTGCTGGGGACAGCATTCAGCACTTGACTGTTaGATGCATTTTTCATTTGGC | + |
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Preference number: 2 (lower is better) Translates to: PTSSGNQLPGAWECWGQHSALDC*MHFSFG Trigger: GCCAAATGAAAAATGCATCCAACAGTCAAGTGCTGA...ATGCTGTCCCCAGCACTCCCAGGCCCCCGGGAGCTGGTTTCCGGATGACGTAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR-3UTR TCA 90 bp | GCATGTCACTTCCTGTGGGAAGCCTGTGACGGCCTTGTGCTCACTAGACTCCCACACCTTCTCAGCACTTaGCTGTTGGATGCATTTTTC | + |
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Preference number: 2 (lower is better) Translates to: ACHFLWEACDGLVLTRLPHLLST*LLDAFF Trigger: GAAAAATGCATCCAACAGTCAAGTGCTGAGAAGGTG...TGGGAGTCTAGTGAGCACAAGGCCGTCACAGGCTTCCCACAGGAAGTGACATGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR-3UTR GCA 90 bp | TCCTGGAAGAACTCACGCTGGAGGCTGAACGGGGCTGTGAACAGGGGGTGCGCAAAACCAAGGACATCATaGACAAAAACCTCTTACCTA | + |
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Preference number: 2 (lower is better) Translates to: SWKNSRWRLNGAVNRGCAKPRTS*TKTSYL Trigger: TAGGTAAGAGGTTTTTGTGCATGATGTCCTTGGTTT...TGCGCACCCCCTGTTCACAGCCCCGTTCAGCCTCCAGCGTGAGTTCTTCCAGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR-3UTR CCA 90 bp | AAAGCCCTAAAGCATGTCACTTCCTGTGGGAAGCCTGTGACGGCCTTGTGCTCAAGCTGTGCATATTCCTaGAAGAACTCACGCTGGAGG | + |
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Preference number: 2 (lower is better) Translates to: KALKHVTSCGKPVTALCSSCAYS*KNSRWR Trigger: CCTCCAGCGTGAGTTCTTCCAGGAATATGCACAGCT...TGAGCACAAGGCCGTCACAGGCTTCCCACAGGAAGTGACATGCTTTAGGGCTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR-3UTR GCA 90 bp | TCCTGGAAGAACTCACGCTGGAGGCTGAACGGGGCTGTGAACAGGGGGTGCGCACTCTCAGAGATTCATTaGCCAATCATTACACATTAT | + |
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Preference number: 2 (lower is better) Translates to: SWKNSRWRLNGAVNRGCALSEIH*PIITHY Trigger: ATAATGTGTAATGATTGGGCAATGAATCTCTGAGAG...TGCGCACCCCCTGTTCACAGCCCCGTTCAGCCTCCAGCGTGAGTTCTTCCAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR-3UTR CCA 90 bp | ACCAAGGACATCATGCACAAAAACCTCTTACCTATTTTCTCTAAAGCCCTAAAGCGTCCAGCCATTGCGTaGGGGCCAGGGTCACAAAGA | + |
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Preference number: 2 (lower is better) Translates to: TKDIMHKNLLPIFSKALKRPAIA*GPGSQR Trigger: TCTTTGTGACCCTGGCCCCCACGCAATGGCTGGACG...CTTTAGGGCTTTAGAGAAAATAGGTAAGAGGTTTTTGTGCATGATGTCCTTGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000135123.3 |
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| 3UTR CAA 90 bp | GGGAAAAATGGCCAAGGCTCCTTCCTGCTTCCTCTCAGAGATTCATaGCCCAATCATTACACATTATCATCCCCACTTGACACCTTCTCA | + |
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Preference number: 2 (lower is better) Translates to: GKNGQGSFLLPLRDS*PNHYTLSSPLDTFS Trigger: TGAGAAGGTGTCAAGTGGGGATGATAATGTGTAATGATTGGGCAATGAATCTCTGAGAGGAAGCAGGAAGGAGCCTTGGCCATTTTTCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR-3UTR GCA 90 bp | CCAAGGCTCCTTCCTGCTTCCTCTCAGAGATTCATTGCCCAATCATTACACATTAGAGCGAGTGAGCTGTaGATATTCCTGGAAGAACTC | + |
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Preference number: 2 (lower is better) Translates to: PRLLPASSQRFIAQSLHIRASEL*IFLEEL Trigger: GAGTTCTTCCAGGAATATGCACAGCTCACTCGCTCT...AATGTGTAATGATTGGGCAATGAATCTCTGAGAGGAAGCAGGAAGGAGCCTTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR-3UTR CCA 90 bp | CATTATCATCCCCACTTGACACCTTCTCAGCACTTGACTGTTGGATGCATTTTTAGTTCTTGCAGGTCTTaGGCGCATGCTTCCAGTATA | + |
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Preference number: 2 (lower is better) Translates to: HYHPHLTPSQHLTVGCIFSSCRS*AHASSI Trigger: TATACTGGAAGCATGCGCCCAAGACCTGCAAGAACT...AAAAATGCATCCAACAGTCAAGTGCTGAGAAGGTGTCAAGTGGGGATGATAATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135123.3 |
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| 3UTR-3UTR GCA 90 bp | ATCATGCACAAAAACCTCTTACCTATTTTCTCTAAAGCCCTAAAGCATGTCACTTTTGCCATAAATAGATaGGCCACCTCGACCTGTGCC | + |
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Preference number: 2 (lower is better) Translates to: IMHKNLLPIFSKALKHVTFAINR*ATSTCA Trigger: GGCACAGGTCGAGGTGGCGCATCTATTTATGGCAAA...AGTGACATGCTTTAGGGCTTTAGAGAAAATAGGTAAGAGGTTTTTGTGCATGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000135123.3 |
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| 3UTR GCA 72 bp | TCACGCTGGAGGCTGAACGGGGCTGTGAACAGGGGGTaGGCAGCTAGTGCGCTCATCAACGCGGCCCGCTTT | + |
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Preference number: 3 (lower is better) Translates to: SRWRLNGAVNRG*AASALINAARF Trigger: AAAGCGGGCCGCGTTGATGAGCGCACTAGCTGCGCACCCCCTGTTCACAGCCCCGTTCAGCCTCCAGCGTGA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR CCA 72 bp | CACCCTACGTCATCCGGAAACCAGCTCCCGGGGGCCTaGGAGTGCTGGGGACAGCATCCCACCTATCCAGAG | + |
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Preference number: 3 (lower is better) Translates to: HPTSSGNQLPGA*ECWGQHPTYPE Trigger: CTCTGGATAGGTGGGATGCTGTCCCCAGCACTCCCAGGCCCCCGGGAGCTGGTTTCCGGATGACGTAGGGTG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135123.3 |
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| 3UTR GCA 72 bp | TGTAGTAGCCCCGCCGAGCCAGCTCCGCGAAGTTCTTaGAGGTCTTGGGCGCATGCTTCCAGTATAGCTCCA | + |
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Preference number: 3 (lower is better) Translates to: CSSPAEPAPRSS*RSWAHASSIAP Trigger: TGGAGCTATACTGGAAGCATGCGCCCAAGACCTGCAAGAACTTCGCGGAGCTGGCTCGGCGGGGCTACTACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135123.3 |
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| 3UTR CCA 72 bp | CGAGTGAGCTGTGCATATTCCTGGAAGAACTCACGCTaGAGGCTGAACGGGGCTGTGAACAGGGGGTGCGCA | + |
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Preference number: 3 (lower is better) Translates to: RVSCAYSWKNSR*RLNGAVNRGCA Trigger: TGCGCACCCCCTGTTCACAGCCCCGTTCAGCCTCCAGCGTGAGTTCTTCCAGGAATATGCACAGCTCACTCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR CCA 72 bp | CAGTATAGCTCCAGGACAATGACTCCCATGCTGTGGTaGGGACAGAGCCTAGATCAGAGCAGGCGGCAGCCC | + |
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Preference number: 3 (lower is better) Translates to: QYSSRTMTPMLW*GQSLDQSRRQP Trigger: GGGCTGCCGCCTGCTCTGATCTAGGCTCTGTCCCCACCACAGCATGGGAGTCATTGTCCTGGAGCTATACTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000135123.3 |
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| 3UTR CCA 72 bp | GCTCAGAGGGAAGAGCGAGTGAGCTGTGCATATTCCTaGAAGAACTCACGCTGGAGGCTGAACGGGGCTGTG | + |
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Preference number: 3 (lower is better) Translates to: AQREERVSCAYS*KNSRWRLNGAV Trigger: CACAGCCCCGTTCAGCCTCCAGCGTGAGTTCTTCCAGGAATATGCACAGCTCACTCGCTCTTCCCTCTGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR TCA 72 bp | CCAGAGACGACCCCTCTGCTTCGGAGTAGGTATGCATaGCGCAGAATCACACAGCACCCTACGTCATCCGGA | + |
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Preference number: 3 (lower is better) Translates to: PETTPLLRSRYA*RRITQHPTSSG Trigger: TCCGGATGACGTAGGGTGCTGTGTGATTCTGCGTCATGCATACCTACTCCGAAGCAGAGGGGTCGTCTCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR CCA 72 bp | TTCCAGTATAGCTCCAGGACAATGACTCCCATGCTGTaGTGGGGACAGAGCCTAGATCAGAGCAGGCGGCAG | + |
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Preference number: 3 (lower is better) Translates to: FQYSSRTMTPML*WGQSLDQSRRQ Trigger: CTGCCGCCTGCTCTGATCTAGGCTCTGTCCCCACCACAGCATGGGAGTCATTGTCCTGGAGCTATACTGGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135123.3 |
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| 3UTR-3UTR CAA 90 bp | AAGAACTCACGCTGGAGGCTGAACGGGGCTGTGAACAGGGGGTGCGCAGCTAGTCATTATCATCCCCACTaGACACCTTCTCAGCACTTG | + |
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Preference number: 3 (lower is better) Translates to: KNSRWRLNGAVNRGCAASHYHPH*TPSQHL Trigger: CAAGTGCTGAGAAGGTGTCAAGTGGGGATGATAATG...ACTAGCTGCGCACCCCCTGTTCACAGCCCCGTTCAGCCTCCAGCGTGAGTTCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR-3UTR CAA 90 bp | TGTCACTTCCTGTGGGAAGCCTGTGACGGCCTTGTGCTCACTAGACTCCCATCCCATTATCATCCCCACTaGACACCTTCTCAGCACTTG | + |
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Preference number: 3 (lower is better) Translates to: CHFLWEACDGLVLTRLPSHYHPH*TPSQHL Trigger: CAAGTGCTGAGAAGGTGTCAAGTGGGGATGATAATG...GGATGGGAGTCTAGTGAGCACAAGGCCGTCACAGGCTTCCCACAGGAAGTGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR TCA 72 bp | GCAGTATTGATGCTCAGGCTCAGAGGGAAGAGCGAGTaGGCTGTGCATATTCCTGGAAGAACTCACGCTGGA | + |
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Preference number: 3 (lower is better) Translates to: AVLMLRLRGKSE*AVHIPGRTHAG Trigger: TCCAGCGTGAGTTCTTCCAGGAATATGCACAGCTCACTCGCTCTTCCCTCTGAGCCTGAGCATCAATACTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR-3UTR CAA 90 bp | GCATGTCACTTCCTGTGGGAAGCCTGTGACGGCCTTGTGCTCACTAGACTCCCAACACCTTCTCAGCACTaGACTGTTGGATGCATTTTT | + |
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Preference number: 3 (lower is better) Translates to: ACHFLWEACDGLVLTRLPTPSQH*TVGCIF Trigger: AAAAATGCATCCAACAGTCAAGTGCTGAGAAGGTGT...TGGGAGTCTAGTGAGCACAAGGCCGTCACAGGCTTCCCACAGGAAGTGACATGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR-3UTR CAA 90 bp | GGATGTGTAGTGTCAGAAGCAGCAGTATTGATGCTCAGGCTCAGAGGGAAGAGCACACCTTCTCAGCACTaGACTGTTGGATGCATTTTT | + |
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Preference number: 3 (lower is better) Translates to: GCVVSEAAVLMLRLRGKSTPSQH*TVGCIF Trigger: AAAAATGCATCCAACAGTCAAGTGCTGAGAAGGTGT...GCTCTTCCCTCTGAGCCTGAGCATCAATACTGCTGCTTCTGACACTACACATCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR GCA 72 bp | GCCAAGGCTCCTTCCTGCTTCCTCTCAGAGATTCATTaGCCAATCATTACACATTATCATCCCCACTTGACA | + |
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Preference number: 3 (lower is better) Translates to: AKAPSCFLSEIH*PIITHYHPHLT Trigger: TGTCAAGTGGGGATGATAATGTGTAATGATTGGGCAATGAATCTCTGAGAGGAAGCAGGAAGGAGCCTTGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| 3UTR-3UTR CAA 90 bp | TCAGAGATTCATTGCCCAATCATTACACATTATCATCCCCACTTGACACCTTCTAAGTTCTTGCAGGTCTaGGGCGCATGCTTCCAGTAT | + |
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Preference number: 3 (lower is better) Translates to: SEIHCPIITHYHPHLTPSKFLQV*GACFQY Trigger: ATACTGGAAGCATGCGCCCAAGACCTGCAAGAACTT...AGAAGGTGTCAAGTGGGGATGATAATGTGTAATGATTGGGCAATGAATCTCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135123.3 |
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| 3UTR CAA 72 bp | CCCCGCCGAGCCAGCTCCGCGAAGTTCTTGCAGGTCTaGGGCGCATGCTTCCAGTATAGCTCCAGGACAATG | + |
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Preference number: 4 (lower is better) Translates to: PRRASSAKFLQV*GACFQYSSRTM Trigger: CATTGTCCTGGAGCTATACTGGAAGCATGCGCCCAAGACCTGCAAGAACTTCGCGGAGCTGGCTCGGCGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135123.3 |
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| CDS-3UTR CCA 90 bp | GCATATTCCTGGAAGAACTCACGCTGGAGGCTGAACGGGGCTGTGAACAGGGGGCGTCCAGCCATTGCGTaGGGGCCAGGGTCACAAAGA | + |
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Preference number: 4 (lower is better) Translates to: AYSWKNSRWRLNGAVNRGRPAIA*GPGSQR Trigger: TCTTTGTGACCCTGGCCCCCACGCAATGGCTGGACG...CCCCCTGTTCACAGCCCCGTTCAGCCTCCAGCGTGAGTTCTTCCAGGAATATGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000024802.10 |
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| 3UTR CAA 72 bp | AAGCATGTCACTTCCTGTGGGAAGCCTGTGACGGCCTaGTGCTCACTAGACTCCCATCCCTCCCCGGGGAAA | + |
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Preference number: 4 (lower is better) Translates to: KHVTSCGKPVTA*CSLDSHPSPGK Trigger: TTTCCCCGGGGAGGGATGGGAGTCTAGTGAGCACAAGGCCGTCACAGGCTTCCCACAGGAAGTGACATGCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| CDS-3UTR CCA 90 bp | TCCTGGAAGAACTCACGCTGGAGGCTGAACGGGGCTGTGAACAGGGGGTGCGCAAGTTCTTGCAGGTCTTaGGCGCATGCTTCCAGTATA | + |
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Preference number: 4 (lower is better) Translates to: SWKNSRWRLNGAVNRGCASSCRS*AHASSI Trigger: TATACTGGAAGCATGCGCCCAAGACCTGCAAGAACT...TGCGCACCCCCTGTTCACAGCCCCGTTCAGCCTCCAGCGTGAGTTCTTCCAGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024802.10 |
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| CDS-3UTR CCA 90 bp | TTCCAGTATAGCTCCAGGACAATGACTCCCATGCTGTGGTGGGGACAGAGCCTACACGCAGGACAGCTCTaGCATACAATGTTCCAAAGC | + |
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Preference number: 4 (lower is better) Translates to: FQYSSRTMTPMLWWGQSLHAGQL*HTMFQS Trigger: GCTTTGGAACATTGTATGCCAGAGCTGTCCTGCGTG...TAGGCTCTGTCCCCACCACAGCATGGGAGTCATTGTCCTGGAGCTATACTGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000135123.3 |
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| 3UTR CAA 72 bp | GGCCAAGGCTCCTTCCTGCTTCCTCTCAGAGATTCATaGCCCAATCATTACACATTATCATCCCCACTTGAC | + |
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Preference number: 4 (lower is better) Translates to: GQGSFLLPLRDS*PNHYTLSSPLD Trigger: GTCAAGTGGGGATGATAATGTGTAATGATTGGGCAATGAATCTCTGAGAGGAAGCAGGAAGGAGCCTTGGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024802.10 ENSMUST00000135123.3 |
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| CDS-3UTR GCA 90 bp | CATTATCATCCCCACTTGACACCTTCTCAGCACTTGACTGTTGGATGCATTTTTCGGCCAAAAATAGTATaGTTGCCGTCCAGCCATTGC | + |
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Preference number: 4 (lower is better) Translates to: HYHPHLTPSQHLTVGCIFRPKIV*LPSSHC Trigger: GCAATGGCTGGACGGCAAGCATACTATTTTTGGCCG...AAAAATGCATCCAACAGTCAAGTGCTGAGAAGGTGTCAAGTGGGGATGATAATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000024802.10 |
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| CDS-3UTR CCA 90 bp | GGCTCCTTCCTGCTTCCTCTCAGAGATTCATTGCCCAATCATTACACATTATCAACCATCCCTATACCCTaGCACACTCGGCCAAAAATA | + |
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Preference number: 4 (lower is better) Translates to: GSFLLPLRDSLPNHYTLSTIPIP*HTRPKI Trigger: TATTTTTGGCCGAGTGTGCCAGGGTATAGGGATGGT...TGATAATGTGTAATGATTGGGCAATGAATCTCTGAGAGGAAGCAGGAAGGAGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024802.10 |
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| CDS-3UTR GCA 90 bp | ACCAAGGACATCATGCACAAAAACCTCTTACCTATTTTCTCTAAAGCCCTAAAGATTGGTGTCTGGTCCTaGGTTGGCCATGGCGAGAAT | + |
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Preference number: 4 (lower is better) Translates to: TKDIMHKNLLPIFSKALKIGVWS*VGHGEN Trigger: ATTCTCGCCATGGCCAACGCAGGACCAGACACCAAT...CTTTAGGGCTTTAGAGAAAATAGGTAAGAGGTTTTTGTGCATGATGTCCTTGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024802.10 |
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| CDS-3UTR GCA 90 bp | ACCAAGGACATCATGCACAAAAACCTCTTACCTATTTTCTCTAAAGCCCTAAAGTTTGCCATAAATAGATaGGCCACCTCGACCTGTGCC | + |
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Preference number: 4 (lower is better) Translates to: TKDIMHKNLLPIFSKALKFAINR*ATSTCA Trigger: GGCACAGGTCGAGGTGGCGCATCTATTTATGGCAAA...CTTTAGGGCTTTAGAGAAAATAGGTAAGAGGTTTTTGTGCATGATGTCCTTGGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024802.10 |
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| CDS-3UTR CAA 90 bp | ATCATGCACAAAAACCTCTTACCTATTTTCTCTAAAGCCCTAAAGCATGTCACTAAGTTCTTGCAGGTCTaGGGCGCATGCTTCCAGTAT | + |
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Preference number: 5 (lower is better) Translates to: IMHKNLLPIFSKALKHVTKFLQV*GACFQY Trigger: ATACTGGAAGCATGCGCCCAAGACCTGCAAGAACTT...AGTGACATGCTTTAGGGCTTTAGAGAAAATAGGTAAGAGGTTTTTGTGCATGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000024802.10 |
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