RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PPIF (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021868

Ensembl transcript IDs: ENSMUST00000022419.7

Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGGGTACATGGCCCGATGGCCATACTGATGCCCAGAAACGGGATCTaGGGCAGGATGGACAGTGGAGAGCAGCCTGGTCTGGGAGGACCA +
Preference number: 1 (lower is better)
Translates to: RVHGPMAILMPRNGI*GRMDSGEQPGLGGP
Trigger: TGGTCCTCCCAGACCAGGCTGCTCTCCACTGTCCATCCTGCCTCAGATCCCGTTTCTGGGCATCAGTATGGCCATCGGGCCATGTACCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR GCA 90 bp TGGGGGTGTCTGTGGCTTGTGCCAACTCAGGTCACACATGGACAGTaGCGTGAGTGTCACAGCAACACAGGTCACACACGGACAGTGCCA +
Preference number: 1 (lower is better)
Translates to: WGCLWLVPTQVTHGQ*RECHSNTGHTRTVP
Trigger: TGGCACTGTCCGTGTGTGACCTGTGTTGCTGTGACACTCACGGCACTGTCCATGTGTGACCTGAGTTGGCACAAGCCACAGACACCCCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR TCA 90 bp GCAGGATGGACAGTGGAGAGCAGCCTGGTCTGGGAGGACCATGCCTaGGTGGCCTTCCTCAGACTCAATAGAAGTGGGTGCAAACTGTTC +
Preference number: 1 (lower is better)
Translates to: AGWTVESSLVWEDHA*VAFLRLNRSGCKLF
Trigger: GAACAGTTTGCACCCACTTCTATTGAGTCTGAGGAAGGCCACTCAGGCATGGTCCTCCCAGACCAGGCTGCTCTCCACTGTCCATCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR TCA 90 bp GTGTCTGTGGCTTGTGCCAACTCAGGTCACACATGGACAGTGCCGTaGGTGTCACAGCAACACAGGTCACACACGGACAGTGCCATGAGT +
Preference number: 1 (lower is better)
Translates to: VSVACANSGHTWTVP*VSQQHRSHTDSAMS
Trigger: ACTCATGGCACTGTCCGTGTGTGACCTGTGTTGCTGTGACACTCACGGCACTGTCCATGTGTGACCTGAGTTGGCACAAGCCACAGACAC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR CCA 90 bp GATGGACAGTGGAGAGCAGCCTGGTCTGGGAGGACCATGCCTGAGTaGCCTTCCTCAGACTCAATAGAAGTGGGTGCAAACTGTTCTTTG +
Preference number: 1 (lower is better)
Translates to: DGQWRAAWSGRTMPE*PSSDSIEVGANCSL
Trigger: CAAAGAACAGTTTGCACCCACTTCTATTGAGTCTGAGGAAGGCCACTCAGGCATGGTCCTCCCAGACCAGGCTGCTCTCCACTGTCCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR TCA 90 bp TCACAGGCTTTCAAAAATCACAGCAGCAGCCAGCAGGATTCACAGTaGCCAGGAGGGAAGGCATTGACGCTGGGACTTTCACAAGAGCCC +
Preference number: 1 (lower is better)
Translates to: SQAFKNHSSSQQDSQ*PGGKALTLGLSQEP
Trigger: GGGCTCTTGTGAAAGTCCCAGCGTCAATGCCTTCCCTCCTGGTCACTGTGAATCCTGCTGGCTGCTGCTGTGATTTTTGAAAGCCTGTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR GCA 90 bp ATTGAGCAGAAAGACCGGGCTCACAGGTCTGTTCCCAGGTCCTGCTaGTTCTATTTCACAGGCTTTCAAAAATCACAGCAGCAGCCAGCA +
Preference number: 1 (lower is better)
Translates to: IEQKDRAHRSVPRSC*FYFTGFQKSQQQPA
Trigger: TGCTGGCTGCTGCTGTGATTTTTGAAAGCCTGTGAAATAGAAGCAGCAGGACCTGGGAACAGACCTGTGAGCCCGGTCTTTCTGCTCAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR GCA 90 bp CACATTGAGCAGAAAGACCGGGCTCACAGGTCTGTTCCCAGGTCCTaGTGCTTCTATTTCACAGGCTTTCAAAAATCACAGCAGCAGCCA +
Preference number: 1 (lower is better)
Translates to: HIEQKDRAHRSVPRS*CFYFTGFQKSQQQP
Trigger: TGGCTGCTGCTGTGATTTTTGAAAGCCTGTGAAATAGAAGCAGCAGGACCTGGGAACAGACCTGTGAGCCCGGTCTTTCTGCTCAATGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR TCA 90 bp AGACTCAATAGAAGTGGGTGCAAACTGTTCTTTGGAGAACCTGGGTaGATCAAGACATGGATGCCTGCTGCTGTCCTAGCACCTTGGCTG +
Preference number: 1 (lower is better)
Translates to: RLNRSGCKLFFGEPG*IKTWMPAAVLAPWL
Trigger: CAGCCAAGGTGCTAGGACAGCAGCAGGCATCCATGTCTTGATTCACCCAGGTTCTCCAAAGAACAGTTTGCACCCACTTCTATTGAGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR TCA 90 bp AGGTCACACACGGACAGTGCCATGAGTGTCACAGCTTTGTTTCGATaGGATCTTGAATTCTATGTTAAATTATTGCAAGGAGGAAGACAA +
Preference number: 1 (lower is better)
Translates to: RSHTDSAMSVTALFR*DLEFYVKLLQGGRQ
Trigger: TTGTCTTCCTCCTTGCAATAATTTAACATAGAATTCAAGATCTCATCGAAACAAAGCTGTGACACTCATGGCACTGTCCGTGTGTGACCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR-3UTR GCA 90 bp GGGTGTCTGTGGCTTGTGCCAACTCAGGTCACACATGGACAGTGCCGTGAGTGTGACATGGATGCCTGCTaGTGTCCTAGCACCTTGGCT +
Preference number: 2 (lower is better)
Translates to: GCLWLVPTQVTHGQCRECDMDAC*CPSTLA
Trigger: AGCCAAGGTGCTAGGACAGCAGCAGGCATCCATGTC...ACACTCACGGCACTGTCCATGTGTGACCTGAGTTGGCACAAGCCACAGACACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR-3UTR TCA 90 bp TTGAGCAGAAAGACCGGGCTCACAGGTCTGTTCCCAGGTCCTGCTGCTTCTATTCAGGAGGGAAGGCATTaGCGCTGGGACTTTCACAAG +
Preference number: 2 (lower is better)
Translates to: LSRKTGLTGLFPGPAASIQEGRH*RWDFHK
Trigger: CTTGTGAAAGTCCCAGCGTCAATGCCTTCCCTCCTG...AATAGAAGCAGCAGGACCTGGGAACAGACCTGTGAGCCCGGTCTTTCTGCTCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR-3UTR GCA 90 bp ACACAGGTCACACACGGACAGTGCCATGAGTGTCACAGCTTTGTTTCGATGAGAGGTCTGGGAGGACCATaGCTGAGTGGCCTTCCTCAG +
Preference number: 2 (lower is better)
Translates to: TQVTHGQCHECHSFVSMRGLGGP*LSGLPQ
Trigger: CTGAGGAAGGCCACTCAGGCATGGTCCTCCCAGACC...TCTCATCGAAACAAAGCTGTGACACTCATGGCACTGTCCGTGTGTGACCTGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR CAA 90 bp ATGAGGTCAGGCAGTGTCTGTAAGTTTTCACCACGGGAATTCACATaGAGCAGAAAGACCGGGCTCACAGGTCTGTTCCCAGGTCCTGCT +
Preference number: 2 (lower is better)
Translates to: MRSGSVCKFSPREFT*SRKTGLTGLFPGPA
Trigger: AGCAGGACCTGGGAACAGACCTGTGAGCCCGGTCTTTCTGCTCAATGTGAATTCCCGTGGTGAAAACTTACAGACACTGCCTGACCTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR-3UTR TCA 90 bp AGTGCCGTGAGTGTCACAGCAACACAGGTCACACACGGACAGTGCCATGAGTGTTTTGGAGAACCTGGGTaGATCAAGACATGGATGCCT +
Preference number: 2 (lower is better)
Translates to: SAVSVTATQVTHGQCHECFGEPG*IKTWMP
Trigger: AGGCATCCATGTCTTGATTCACCCAGGTTCTCCAAA...ACACTCATGGCACTGTCCGTGTGTGACCTGTGTTGCTGTGACACTCACGGCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR-3UTR TCA 90 bp TTGAGCAGAAAGACCGGGCTCACAGGTCTGTTCCCAGGTCCTGCTGCTTCTATTACACGGACAGTGCCATaGGTGTCACAGCTTTGTTTC +
Preference number: 2 (lower is better)
Translates to: LSRKTGLTGLFPGPAASITRTVP*VSQLCF
Trigger: GAAACAAAGCTGTGACACTCATGGCACTGTCCGTGT...AATAGAAGCAGCAGGACCTGGGAACAGACCTGTGAGCCCGGTCTTTCTGCTCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR CAA 90 bp GAGTGGCCTTCCTCAGACTCAATAGAAGTGGGTGCAAACTGTTCTTaGGAGAACCTGGGTGAATCAAGACATGGATGCCTGCTGCTGTCC +
Preference number: 2 (lower is better)
Translates to: EWPSSDSIEVGANCS*ENLGESRHGCLLLS
Trigger: GGACAGCAGCAGGCATCCATGTCTTGATTCACCCAGGTTCTCCAAAGAACAGTTTGCACCCACTTCTATTGAGTCTGAGGAAGGCCACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR CCA 72 bp CGGGATCTGAGGCAGGATGGACAGTGGAGAGCAGCCTaGTCTGGGAGGACCATGCCTGAGTGGCCTTCCTCA +
Preference number: 3 (lower is better)
Translates to: RDLRQDGQWRAA*SGRTMPEWPSS
Trigger: TGAGGAAGGCCACTCAGGCATGGTCCTCCCAGACCAGGCTGCTCTCCACTGTCCATCCTGCCTCAGATCCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR TCA 72 bp GGGAAGGCATTGACGCTGGGACTTTCACAAGAGCCCTaGGTGATGTCTCAGAAGCCAGGCTGGGAGGTGGGG +
Preference number: 3 (lower is better)
Translates to: GKALTLGLSQEP*VMSQKPGWEVG
Trigger: CCCCACCTCCCAGCCTGGCTTCTGAGACATCACTCAGGGCTCTTGTGAAAGTCCCAGCGTCAATGCCTTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR GCA 72 bp CTGTGGCTTGTGCCAACTCAGGTCACACATGGACAGTaGCGTGAGTGTCACAGCAACACAGGTCACACACGG +
Preference number: 3 (lower is better)
Translates to: LWLVPTQVTHGQ*RECHSNTGHTR
Trigger: CCGTGTGTGACCTGTGTTGCTGTGACACTCACGGCACTGTCCATGTGTGACCTGAGTTGGCACAAGCCACAG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR CCA 72 bp TGGAGAGCAGCCTGGTCTGGGAGGACCATGCCTGAGTaGCCTTCCTCAGACTCAATAGAAGTGGGTGCAAAC +
Preference number: 3 (lower is better)
Translates to: WRAAWSGRTMPE*PSSDSIEVGAN
Trigger: GTTTGCACCCACTTCTATTGAGTCTGAGGAAGGCCACTCAGGCATGGTCCTCCCAGACCAGGCTGCTCTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR TCA 72 bp GCTTGTGCCAACTCAGGTCACACATGGACAGTGCCGTaGGTGTCACAGCAACACAGGTCACACACGGACAGT +
Preference number: 3 (lower is better)
Translates to: ACANSGHTWTVP*VSQQHRSHTDS
Trigger: ACTGTCCGTGTGTGACCTGTGTTGCTGTGACACTCACGGCACTGTCCATGTGTGACCTGAGTTGGCACAAGC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR TCA 72 bp GCAGTGTCTGTAAGTTTTCACCACGGGAATTCACATTaGGCAGAAAGACCGGGCTCACAGGTCTGTTCCCAG +
Preference number: 3 (lower is better)
Translates to: AVSVSFHHGNSH*AERPGSQVCSQ
Trigger: CTGGGAACAGACCTGTGAGCCCGGTCTTTCTGCTCAATGTGAATTCCCGTGGTGAAAACTTACAGACACTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR TCA 72 bp AGAAGTGGGTGCAAACTGTTCTTTGGAGAACCTGGGTaGATCAAGACATGGATGCCTGCTGCTGTCCTAGCA +
Preference number: 3 (lower is better)
Translates to: RSGCKLFFGEPG*IKTWMPAAVLA
Trigger: TGCTAGGACAGCAGCAGGCATCCATGTCTTGATTCACCCAGGTTCTCCAAAGAACAGTTTGCACCCACTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR GCA 72 bp GTGAGTGTCACAGCAACACAGGTCACACACGGACAGTaGCATGAGTGTCACAGCTTTGTTTCGATGAGATCT +
Preference number: 3 (lower is better)
Translates to: VSVTATQVTHGQ*HECHSFVSMRS
Trigger: AGATCTCATCGAAACAAAGCTGTGACACTCATGGCACTGTCCGTGTGTGACCTGTGTTGCTGTGACACTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR GCA 72 bp AAAGACCGGGCTCACAGGTCTGTTCCCAGGTCCTGCTaGTTCTATTTCACAGGCTTTCAAAAATCACAGCAG +
Preference number: 3 (lower is better)
Translates to: KDRAHRSVPRSC*FYFTGFQKSQQ
Trigger: CTGCTGTGATTTTTGAAAGCCTGTGAAATAGAAGCAGCAGGACCTGGGAACAGACCTGTGAGCCCGGTCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR GCA 72 bp CAGAAAGACCGGGCTCACAGGTCTGTTCCCAGGTCCTaGTGCTTCTATTTCACAGGCTTTCAAAAATCACAG +
Preference number: 3 (lower is better)
Translates to: QKDRAHRSVPRS*CFYFTGFQKSQ
Trigger: CTGTGATTTTTGAAAGCCTGTGAAATAGAAGCAGCAGGACCTGGGAACAGACCTGTGAGCCCGGTCTTTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR CCA 72 bp ATCAAGGAAAAGAGTCAGGAGCCTTCCCTGACTAACTaGTCAGCATTGCCAATGTCCAAGGCACACGCACAT +
Preference number: 3 (lower is better)
Translates to: IKEKSQEPSLTN*SALPMSKAHAH
Trigger: ATGTGCGTGTGCCTTGGACATTGGCAATGCTGACCAGTTAGTCAGGGAAGGCTCCTGACTCTTTTCCTTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR TCA 72 bp TGTCACAGCAACACAGGTCACACACGGACAGTGCCATaGGTGTCACAGCTTTGTTTCGATGAGATCTTGAAT +
Preference number: 3 (lower is better)
Translates to: CHSNTGHTRTVP*VSQLCFDEILN
Trigger: ATTCAAGATCTCATCGAAACAAAGCTGTGACACTCATGGCACTGTCCGTGTGTGACCTGTGTTGCTGTGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
CDS-3UTR TCA 90 bp GAAGGCATTGACGCTGGGACTTTCACAAGAGCCCTGAGTGATGTCTCAGAAGCCCGCCAGCCTGGCACATaGAGGCTGGGATCACCCTGT +
Preference number: 4 (lower is better)
Translates to: EGIDAGTFTRALSDVSEARQPGT*RLGSPC
Trigger: ACAGGGTGATCCCAGCCTTCATGTGCCAGGCTGGCG...GGCTTCTGAGACATCACTCAGGGCTCTTGTGAAAGTCCCAGCGTCAATGCCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
CDS-3UTR TCA 90 bp GGGGTTGGGGGTGTCTGTGGCTTGTGCCAACTCAGGTCACACATGGACAGTGCCCAGTGCATAGGGCTCTaGAGTTCTCTGCAGTCTTTG +
Preference number: 4 (lower is better)
Translates to: GVGGVCGLCQLRSHMDSAQCIGL*SSLQSL
Trigger: CAAAGACTGCAGAGAACTTCAGAGCCCTATGCACTG...GGCACTGTCCATGTGTGACCTGAGTTGGCACAAGCCACAGACACCCCCAACCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
CDS-3UTR TCA 90 bp GGGGTTGGGGGTGTCTGTGGCTTGTGCCAACTCAGGTCACACATGGACAGTGCCGTGCAGATAAAGAACTaGGAGCCATTGGTGTTGGGG +
Preference number: 4 (lower is better)
Translates to: GVGGVCGLCQLRSHMDSAVQIKN*EPLVLG
Trigger: CCCCAACACCAATGGCTCTCAGTTCTTTATCTGCAC...GGCACTGTCCATGTGTGACCTGAGTTGGCACAAGCCACAGACACCCCCAACCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
CDS-3UTR TCA 90 bp GAAGGCATTGACGCTGGGACTTTCACAAGAGCCCTGAGTGATGTCTCAGAAGCCTGCCATTGTGGTTGGTaGAGTCGCCAGCCTGGCACA +
Preference number: 4 (lower is better)
Translates to: EGIDAGTFTRALSDVSEACHCGW*SRQPGT
Trigger: TGTGCCAGGCTGGCGACTTCACCAACCACAATGGCA...GGCTTCTGAGACATCACTCAGGGCTCTTGTGAAAGTCCCAGCGTCAATGCCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
CDS-3UTR CCA 90 bp AGTGCCGTGAGTGTCACAGCAACACAGGTCACACACGGACAGTGCCATGAGTGTCATGGACAGGACACCTaGCCCCACATGCTTCAGTGT +
Preference number: 4 (lower is better)
Translates to: SAVSVTATQVTHGQCHECHGQDT*PHMLQC
Trigger: ACACTGAAGCATGTGGGGCCAGGTGTCCTGTCCATG...ACACTCATGGCACTGTCCGTGTGTGACCTGTGTTGCTGTGACACTCACGGCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
CDS-3UTR GCA 90 bp AGTGCCGTGAGTGTCACAGCAACACAGGTCACACACGGACAGTGCCATGAGTGTTGGCCGAACACGACATaGTTGCCATCTAGCCAGTCT +
Preference number: 4 (lower is better)
Translates to: SAVSVTATQVTHGQCHECWPNTT*LPSSQS
Trigger: AGACTGGCTAGATGGCAAGCATGTCGTGTTCGGCCA...ACACTCATGGCACTGTCCGTGTGTGACCTGTGTTGCTGTGACACTCACGGCACT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
CDS-3UTR CCA 90 bp AGTGCCGTGAGTGTCACAGCAACACAGGTCACACACGGACAGTGCCATGAGTGTTCACCCTGTGGAAGGTaGAGCCTTTGTAGCCAAAGC +
Preference number: 4 (lower is better)
Translates to: SAVSVTATQVTHGQCHECSPCGR*SLCSQS
Trigger: GCTTTGGCTACAAAGGCTCCACCTTCCACAGGGTGA...ACACTCATGGCACTGTCCGTGTGTGACCTGTGTTGCTGTGACACTCACGGCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
CDS-3UTR CCA 90 bp ACAGCAACACAGGTCACACACGGACAGTGCCATGAGTGTCACAGCTTTGTTTCGCCTCCTGTGCCATTGTaGTTGGTGAAGTCGCCAGCC +
Preference number: 4 (lower is better)
Translates to: TATQVTHGQCHECHSFVSPPVPL*LVKSPA
Trigger: GGCTGGCGACTTCACCAACCACAATGGCACAGGAGG...CGAAACAAAGCTGTGACACTCATGGCACTGTCCGTGTGTGACCTGTGTTGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
CDS-3UTR TCA 90 bp GAAGGCATTGACGCTGGGACTTTCACAAGAGCCCTGAGTGATGTCTCAGAAGCCCCACATGCTTCAGTGTaGAGTTCTCGTCGGGAAAGC +
Preference number: 4 (lower is better)
Translates to: EGIDAGTFTRALSDVSEAPHASV*SSRRES
Trigger: GCTTTCCCGACGAGAACTTCACACTGAAGCATGTGG...GGCTTCTGAGACATCACTCAGGGCTCTTGTGAAAGTCCCAGCGTCAATGCCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
CDS-3UTR CCA 90 bp ACACAGGTCACACACGGACAGTGCCATGAGTGTCACAGCTTTGTTTCGATGAGAAGCGGCTTCCGTAGATaGACCTCCCTCCTGTGCCAT +
Preference number: 4 (lower is better)
Translates to: TQVTHGQCHECHSFVSMRSGFRR*TSLLCH
Trigger: ATGGCACAGGAGGGAGGTCCATCTACGGAAGCCGCT...TCTCATCGAAACAAAGCTGTGACACTCATGGCACTGTCCGTGTGTGACCTGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
CDS-3UTR TCA 90 bp GCAAACTGTTCTTTGGAGAACCTGGGTGAATCAAGACATGGATGCCTGCTGCTGCATCCATGCCCTCTTTaGCATGGCCGAACACGACAT +
Preference number: 4 (lower is better)
Translates to: ANCSLENLGESRHGCLLLHPCPL*HGRTRH
Trigger: ATGTCGTGTTCGGCCATGTCAAAGAGGGCATGGATG...CAGCAGCAGGCATCCATGTCTTGATTCACCCAGGTTCTCCAAAGAACAGTTTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
CDS-3UTR GCA 90 bp AAGGAAAAGAGTCAGGAGCCTTCCCTGACTAACTGGTCAGCATTGCCAATGTCCACACCTGGCCCCACATaGTTCAGTGTGAAGTTCTCG +
Preference number: 4 (lower is better)
Translates to: KEKSQEPSLTNWSALPMSTPGPT*FSVKFS
Trigger: CGAGAACTTCACACTGAAGCATGTGGGGCCAGGTGT...GGACATTGGCAATGCTGACCAGTTAGTCAGGGAAGGCTCCTGACTCTTTTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
CDS-3UTR CCA 90 bp CAAACTGTTCTTTGGAGAACCTGGGTGAATCAAGACATGGATGCCTGCTGCTGTCTGGCACATGAAGGCTaGGATCACCCTGTGGAAGGT +
Preference number: 4 (lower is better)
Translates to: QTVLWRTWVNQDMDACCCLAHEG*DHPVEG
Trigger: ACCTTCCACAGGGTGATCCCAGCCTTCATGTGCCAG...ACAGCAGCAGGCATCCATGTCTTGATTCACCCAGGTTCTCCAAAGAACAGTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
3UTR CAA 72 bp GGCAGTGTCTGTAAGTTTTCACCACGGGAATTCACATaGAGCAGAAAGACCGGGCTCACAGGTCTGTTCCCA +
Preference number: 4 (lower is better)
Translates to: GSVCKFSPREFT*SRKTGLTGLFP
Trigger: TGGGAACAGACCTGTGAGCCCGGTCTTTCTGCTCAATGTGAATTCCCGTGGTGAAAACTTACAGACACTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
CDS-3UTR TCA 90 bp AAGGAAAAGAGTCAGGAGCCTTCCCTGACTAACTGGTCAGCATTGCCAATGTCCCGTCTTCCCACTTTTTaGGCCGAAAGATTCTATTTT +
Preference number: 4 (lower is better)
Translates to: KEKSQEPSLTNWSALPMSRLPTF*AERFYF
Trigger: AAAATAGAATCTTTCGGCTCAAAAAGTGGGAAGACG...GGACATTGGCAATGCTGACCAGTTAGTCAGGGAAGGCTCCTGACTCTTTTCCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
CDS-3UTR CAA 90 bp GGGGTTGGGGGTGTCTGTGGCTTGTGCCAACTCAGGTCACACATGGACAGTGCCAGTTCTCTGCAGTCTTaGGCACGACATCTGCCTTTA +
Preference number: 5 (lower is better)
Translates to: GVGGVCGLCQLRSHMDSASSLQS*ARHLPL
Trigger: TAAAGGCAGATGTCGTGCCAAAGACTGCAGAGAACT...GGCACTGTCCATGTGTGACCTGAGTTGGCACAAGCCACAGACACCCCCAACCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
CDS-3UTR CAA 90 bp ACAGCAACACAGGTCACACACGGACAGTGCCATGAGTGTCACAGCTTTGTTTCGCTCCCTCCTGTGCCATaGTGGTTGGTGAAGTCGCCA +
Preference number: 5 (lower is better)
Translates to: TATQVTHGQCHECHSFVSLPPVP*WLVKSP
Trigger: TGGCGACTTCACCAACCACAATGGCACAGGAGGGAG...CGAAACAAAGCTGTGACACTCATGGCACTGTCCGTGTGTGACCTGTGTTGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
CDS-3UTR CAA 90 bp ACACAGGTCACACACGGACAGTGCCATGAGTGTCACAGCTTTGTTTCGATGAGAACATCCATGCCCTCTTaGACATGGCCGAACACGACA +
Preference number: 5 (lower is better)
Translates to: TQVTHGQCHECHSFVSMRTSMPS*TWPNTT
Trigger: TGTCGTGTTCGGCCATGTCAAAGAGGGCATGGATGT...TCTCATCGAAACAAAGCTGTGACACTCATGGCACTGTCCGTGTGTGACCTGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7
CDS-3UTR CAA 90 bp CAAACTGTTCTTTGGAGAACCTGGGTGAATCAAGACATGGATGCCTGCTGCTGTACGTCTTCCCACTTTTaGAGCCGAAAGATTCTATTT +
Preference number: 5 (lower is better)
Translates to: QTVLWRTWVNQDMDACCCTSSHF*SRKILF
Trigger: AAATAGAATCTTTCGGCTCAAAAAGTGGGAAGACGT...ACAGCAGCAGGCATCCATGTCTTGATTCACCCAGGTTCTCCAAAGAACAGTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022419.7