Pregenerated sensors for PPIE (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028651Ensembl transcript IDs: ENSMUST00000030404.5
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCAGATGAGCAGCTGCTAAGGCAGGTGACCCCAAGGAAAGGCTTGTaGTCTACACAGCTTGCTGCACAGGGCCCAGACCAGGCAGTTCCC | + |
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Preference number: 1 (lower is better) Translates to: ADEQLLRQVTPRKGL*STQLAAQGPDQAVP Trigger: GGGAACTGCCTGGTCTGGGCCCTGTGCAGCAAGCTGTGTAGAGCACAAGCCTTTCCTTGGGGTCACCTGCCTTAGCAGCTGCTCATCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| 3UTR GCA 90 bp | CACCTAGCAGCTACAGACAGTTCAGGACAGGTGGCGGCAGCACACTaGCTATGCTGGCTTTCAGGCCCAGTCATGCCTGCAGAAGGCCTG | + |
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Preference number: 1 (lower is better) Translates to: HLAATDSSGQVAAAH*LCWLSGPVMPAEGL Trigger: CAGGCCTTCTGCAGGCATGACTGGGCCTGAAAGCCAGCATAGGCAGTGTGCTGCCGCCACCTGTCCTGAACTGTCTGTAGCTGCTAGGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| 3UTR GCA 90 bp | GCTAAGGCAGGTGACCCCAAGGAAAGGCTTGTGCTCTACACAGCTTaGTGCACAGGGCCCAGACCAGGCAGTTCCCCTCGTCTTACAGAG | + |
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Preference number: 1 (lower is better) Translates to: AKAGDPKERLVLYTA*CTGPRPGSSPRLTE Trigger: CTCTGTAAGACGAGGGGAACTGCCTGGTCTGGGCCCTGTGCAGCAAGCTGTGTAGAGCACAAGCCTTTCCTTGGGGTCACCTGCCTTAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| 3UTR-3UTR GCA 90 bp | AGCCACCTAGCAGCTACAGACAGTTCAGGACAGGTGGCGGCAGCACACTGCCTAAGGCCCAGTCATGCCTaGAGAAGGCCTGGGCACTGC | + |
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Preference number: 2 (lower is better) Translates to: SHLAATDSSGQVAAAHCLRPSHA*RRPGHC Trigger: GCAGTGCCCAGGCCTTCTGCAGGCATGACTGGGCCT...TAGGCAGTGTGCTGCCGCCACCTGTCCTGAACTGTCTGTAGCTGCTAGGTGGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| 3UTR-3UTR TCA 90 bp | GCAGCTACAGACAGTTCAGGACAGGTGGCGGCAGCACACTGCCTATGCTGGCTTCCTGGGCACTGCAGATaGGCAGCTGCTAAGGCAGGT | + |
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Preference number: 2 (lower is better) Translates to: AATDSSGQVAAAHCLCWLPGHCR*AAAKAG Trigger: ACCTGCCTTAGCAGCTGCTCATCTGCAGTGCCCAGG...AAGCCAGCATAGGCAGTGTGCTGCCGCCACCTGTCCTGAACTGTCTGTAGCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| 3UTR GCA 72 bp | GGTGACCCCAAGGAAAGGCTTGTGCTCTACACAGCTTaGTGCACAGGGCCCAGACCAGGCAGTTCCCCTCGT | + |
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Preference number: 3 (lower is better) Translates to: GDPKERLVLYTA*CTGPRPGSSPR Trigger: ACGAGGGGAACTGCCTGGTCTGGGCCCTGTGCAGCAAGCTGTGTAGAGCACAAGCCTTTCCTTGGGGTCACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| 3UTR GCA 72 bp | GACAGTTCAGGACAGGTGGCGGCAGCACACTGCCTATaGTGGCTTTCAGGCCCAGTCATGCCTGCAGAAGGC | + |
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Preference number: 3 (lower is better) Translates to: DSSGQVAAAHCL*WLSGPVMPAEG Trigger: GCCTTCTGCAGGCATGACTGGGCCTGAAAGCCAGCATAGGCAGTGTGCTGCCGCCACCTGTCCTGAACTGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| 3UTR GCA 72 bp | GACCCCAAGGAAAGGCTTGTGCTCTACACAGCTTGCTaGACAGGGCCCAGACCAGGCAGTTCCCCTCGTCTT | + |
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Preference number: 3 (lower is better) Translates to: DPKERLVLYTAC*TGPRPGSSPRL Trigger: AAGACGAGGGGAACTGCCTGGTCTGGGCCCTGTGCAGCAAGCTGTGTAGAGCACAAGCCTTTCCTTGGGGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| 3UTR GCA 72 bp | GCTACAGACAGTTCAGGACAGGTGGCGGCAGCACACTaGCTATGCTGGCTTTCAGGCCCAGTCATGCCTGCA | + |
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Preference number: 3 (lower is better) Translates to: ATDSSGQVAAAH*LCWLSGPVMPA Trigger: TGCAGGCATGACTGGGCCTGAAAGCCAGCATAGGCAGTGTGCTGCCGCCACCTGTCCTGAACTGTCTGTAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS-3UTR CCA 90 bp | CAGTTCAGGACAGGTGGCGGCAGCACACTGCCTATGCTGGCTTTCAGGCCCAGTGTGGGCTCTCCCTCCTaGGCTTCAGCTTTGGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: QFRTGGGSTLPMLAFRPSVGSPS*ASALGG Trigger: GCCTCCCAAAGCTGAAGCCCAGGAGGGAGAGCCCAC...ACTGGGCCTGAAAGCCAGCATAGGCAGTGTGCTGCCGCCACCTGTCCTGAACTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS-3UTR CCA 90 bp | GACAGTTCAGGACAGGTGGCGGCAGCACACTGCCTATGCTGGCTTTCAGGCCCACCTGGGCTTCAGCTTTaGGAGGCTCGGGTCCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: DSSGQVAAAHCLCWLSGPPGLQL*EARVLL Trigger: AAGAAGGACCCGAGCCTCCCAAAGCTGAAGCCCAGG...TGGGCCTGAAAGCCAGCATAGGCAGTGTGCTGCCGCCACCTGTCCTGAACTGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS-3UTR GCA 90 bp | AGGCTTGTGCTCTACACAGCTTGCTGCACAGGGCCCAGACCAGGCAGTTCCCCTGCAGCGGAAGTTTTCTaGGGTCATGGGCACCACATC | + |
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Preference number: 4 (lower is better) Translates to: RLVLYTACCTGPRPGSSPAAEVF*GHGHHI Trigger: GATGTGGTGCCCATGACCGCAGAAAACTTCCGCTGC...AGGGGAACTGCCTGGTCTGGGCCCTGTGCAGCAAGCTGTGTAGAGCACAAGCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS-3UTR GCA 90 bp | TGCACAGGGCCCAGACCAGGCAGTTCCCCTCGTCTTACAGAGGTGGAGCAGAGATTGGCTTCCCATCCTTaGTGCCCTGAGCCTCGATCT | + |
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Preference number: 4 (lower is better) Translates to: CTGPRPGSSPRLTEVEQRLASHP*CPEPRS Trigger: AGATCGAGGCTCAGGGCAGCAAGGATGGGAAGCCAA...TCTCTGCTCCACCTCTGTAAGACGAGGGGAACTGCCTGGTCTGGGCCCTGTGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS-3UTR TCA 90 bp | CTTGCTGCACAGGGCCCAGACCAGGCAGTTCCCCTCGTCTTACAGAGGTGGAGCGGGATAAATGCAGCATaGAGAACCTTGTCGTCCACC | + |
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Preference number: 4 (lower is better) Translates to: LAAQGPDQAVPLVLQRWSGINAA*RTLSST Trigger: GGTGGACGACAAGGTTCTTCATGCTGCATTTATCCC...GCTCCACCTCTGTAAGACGAGGGGAACTGCCTGGTCTGGGCCCTGTGCAGCAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS-3UTR GCA 90 bp | GGTGACCCCAAGGAAAGGCTTGTGCTCTACACAGCTTGCTGCACAGGGCCCAGAGTTGTCGATAGCTGCTaGCGCATCCTCTGCCAACTC | + |
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Preference number: 4 (lower is better) Translates to: GDPKERLVLYTACCTGPRVVDSC*RILCQL Trigger: GAGTTGGCAGAGGATGCGGCAGCAGCTATCGACAAC...TCTGGGCCCTGTGCAGCAAGCTGTGTAGAGCACAAGCCTTTCCTTGGGGTCACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS-3UTR GCA 90 bp | CTTGCTGCACAGGGCCCAGACCAGGCAGTTCCCCTCGTCTTACAGAGGTGGAGCCATCTGAATGCGGCCTaGTGGCTTGTTCCCAATCTT | + |
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Preference number: 4 (lower is better) Translates to: LAAQGPDQAVPLVLQRWSHLNAA*WLVPNL Trigger: AAGATTGGGAACAAGCCAGCAGGCCGCATTCAGATG...GCTCCACCTCTGTAAGACGAGGGGAACTGCCTGGTCTGGGCCCTGTGCAGCAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS-3UTR GCA 90 bp | AAAGGCTTGTGCTCTACACAGCTTGCTGCACAGGGCCCAGACCAGGCAGTTCCCGTAGGAGCATCTGAATaGGGCCTGCTGGCTTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: KGLCSTQLAAQGPDQAVPVGASE*GLLACS Trigger: GGAACAAGCCAGCAGGCCGCATTCAGATGCTCCTAC...GGGAACTGCCTGGTCTGGGCCCTGTGCAGCAAGCTGTGTAGAGCACAAGCCTTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS-3UTR GCA 90 bp | GCAGAAGGCCTGGGCACTGCAGATGAGCAGCTGCTAAGGCAGGTGACCCCAAGGTCCCCAAATACCACATaGTTGCCGTCCAGCCAATCT | + |
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Preference number: 4 (lower is better) Translates to: AEGLGTADEQLLRQVTPRSPNTT*LPSSQS Trigger: AGATTGGCTGGACGGCAAGCATGTGGTATTTGGGGA...CCTTGGGGTCACCTGCCTTAGCAGCTGCTCATCTGCAGTGCCCAGGCCTTCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS-3UTR CCA 90 bp | ACCCCAAGGAAAGGCTTGTGCTCTACACAGCTTGCTGCACAGGGCCCAGACCAGCCAAAGCCCTTTTCATaGGTGCACAGGCAGCGGAAG | + |
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Preference number: 4 (lower is better) Translates to: TPRKGLCSTQLAAQGPDQPKPFS*VHRQRK Trigger: CTTCCGCTGCCTGTGCACCCATGAAAAGGGCTTTGG...CTGGTCTGGGCCCTGTGCAGCAAGCTGTGTAGAGCACAAGCCTTTCCTTGGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS-3UTR GCA 90 bp | CAGGTGACCCCAAGGAAAGGCTTGTGCTCTACACAGCTTGCTGCACAGGGCCCACATGTTGTCGATAGCTaGTGCCGCATCCTCTGCCAA | + |
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Preference number: 4 (lower is better) Translates to: QVTPRKGLCSTQLAAQGPHVVDS*CRILCQ Trigger: TTGGCAGAGGATGCGGCAGCAGCTATCGACAACATG...TGGGCCCTGTGCAGCAAGCTGTGTAGAGCACAAGCCTTTCCTTGGGGTCACCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS-3UTR CCA 90 bp | TGCACAGGGCCCAGACCAGGCAGTTCCCCTCGTCTTACAGAGGTGGAGCAGAGACATGGAGAGGAGGCCTaGTCCTGTGTGTTTAAGGAT | + |
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Preference number: 4 (lower is better) Translates to: CTGPRPGSSPRLTEVEQRHGEEA*SCVFKD Trigger: ATCCTTAAACACACAGGACCAGGCCTCCTCTCCATG...TCTCTGCTCCACCTCTGTAAGACGAGGGGAACTGCCTGGTCTGGGCCCTGTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS-3UTR TCA 90 bp | ACCCCAAGGAAAGGCTTGTGCTCTACACAGCTTGCTGCACAGGGCCCAGACCAGTTGGCTTGGCCAAATTaGCACGAATCGTCCGTCCAA | + |
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Preference number: 4 (lower is better) Translates to: TPRKGLCSTQLAAQGPDQLAWPN*HESSVQ Trigger: TTGGACGGACGATTCGTGTCAATTTGGCCAAGCCAA...CTGGTCTGGGCCCTGTGCAGCAAGCTGTGTAGAGCACAAGCCTTTCCTTGGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS-3UTR GCA 90 bp | AAAGGCTTGTGCTCTACACAGCTTGCTGCACAGGGCCCAGACCAGGCAGTTCCCAGCCCTTTTCATGGGTaGACAGGCAGCGGAAGTTTT | + |
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Preference number: 4 (lower is better) Translates to: KGLCSTQLAAQGPDQAVPSPFHG*TGSGSF Trigger: AAAACTTCCGCTGCCTGTGCACCCATGAAAAGGGCT...GGGAACTGCCTGGTCTGGGCCCTGTGCAGCAAGCTGTGTAGAGCACAAGCCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS-3UTR CCA 90 bp | AGCCACCTAGCAGCTACAGACAGTTCAGGACAGGTGGCGGCAGCACACTGCCTAAGTTTTCTGCGGTCATaGGCACCACATCAGACCGTA | + |
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Preference number: 4 (lower is better) Translates to: SHLAATDSSGQVAAAHCLSFLRS*APHQTV Trigger: TACGGTCTGATGTGGTGCCCATGACCGCAGAAAACT...TAGGCAGTGTGCTGCCGCCACCTGTCCTGAACTGTCTGTAGCTGCTAGGTGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS-3UTR CCA 90 bp | CAGGTGACCCCAAGGAAAGGCTTGTGCTCTACACAGCTTGCTGCACAGGGCCCAACTTCTTCCCATAGATaGACTTGCCCCCTGTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: QVTPRKGLCSTQLAAQGPTSSHR*TCPLCH Trigger: ATGGCACAGGGGGCAAGTCCATCTATGGGAAGAAGT...TGGGCCCTGTGCAGCAAGCTGTGTAGAGCACAAGCCTTTCCTTGGGGTCACCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS-3UTR CAA 90 bp | CTACACAGCTTGCTGCACAGGGCCCAGACCAGGCAGTTCCCCTCGTCTTACAGATCCTGGGCTTCAGCTTaGGGAGGCTCGGGTCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: LHSLLHRAQTRQFPSSYRSWASA*GGSGPS Trigger: AGAAGGACCCGAGCCTCCCAAAGCTGAAGCCCAGGA...TCTGTAAGACGAGGGGAACTGCCTGGTCTGGGCCCTGTGCAGCAAGCTGTGTAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS-3UTR CAA 90 bp | CTACAGACAGTTCAGGACAGGTGGCGGCAGCACACTGCCTATGCTGGCTTTCAGGTGTTCGGGCCAGAATaGGCCATGGAGAGGAGGCCT | + |
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Preference number: 5 (lower is better) Translates to: LQTVQDRWRQHTAYAGFQVFGPE*AMERRP Trigger: AGGCCTCCTCTCCATGGCCAATTCTGGCCCGAACAC...CTGAAAGCCAGCATAGGCAGTGTGCTGCCGCCACCTGTCCTGAACTGTCTGTAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS-3UTR CAA 90 bp | TGCACAGGGCCCAGACCAGGCAGTTCCCCTCGTCTTACAGAGGTGGAGCAGAGATCAGATTCATTCATGTaGTCGATAGCTGCTGCCGCA | + |
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Preference number: 5 (lower is better) Translates to: CTGPRPGSSPRLTEVEQRSDSFM*SIAAAA Trigger: TGCGGCAGCAGCTATCGACAACATGAATGAATCTGA...TCTCTGCTCCACCTCTGTAAGACGAGGGGAACTGCCTGGTCTGGGCCCTGTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS GCA 72 bp | AAATGCAGCATGAAGAACCTTGTCGTCCACCTCTTCTaGCAGCCCGCCCACGTACAGCACACGCTTGGTGGT | + |
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Preference number: 6 (lower is better) Translates to: KCSMKNLVVHLF*QPAHVQHTLGG Trigger: ACCACCAAGCGTGTGCTGTACGTGGGCGGGCTGGCAGAAGAGGTGGACGACAAGGTTCTTCATGCTGCATTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS GCA 72 bp | ACATCCAGGCCTTCCGTGACCTCCCCAAATACCACATaGTTGCCGTCCAGCCAATCTGTCTTATCACAGGTC | + |
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Preference number: 6 (lower is better) Translates to: TSRPSVTSPNTT*LPSSQSVLSQV Trigger: GACCTGTGATAAGACAGATTGGCTGGACGGCAAGCATGTGGTATTTGGGGAGGTCACGGAAGGCCTGGATGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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| CDS GCA 72 bp | TCCAAAGAGCTCAGATTCATTCATGTTGTCGATAGCTaGTGCCGCATCCTCTGCCAACTCAAACTCAACAAA | + |
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Preference number: 6 (lower is better) Translates to: SKELRFIHVVDS*CRILCQLKLNK Trigger: TTTGTTGAGTTTGAGTTGGCAGAGGATGCGGCAGCAGCTATCGACAACATGAATGAATCTGAGCTCTTTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030404.5 |
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