Pregenerated sensors for PPID (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027804Ensembl transcript IDs: ENSMUST00000029382.13, ENSMUST00000159505.3
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGCTACTGCTCTGAACCATACTGTAAAAATATCTATGTTTTTCAGTaGACCATCAGGTTAAGAACTGCTGGGCTAGACCATCCACAAAGC | + |
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Preference number: 1 (lower is better) Translates to: CYCSEPYCKNIYVFQ*TIRLRTAGLDHPQS Trigger: GCTTTGTGGATGGTCTAGCCCAGCAGTTCTTAACCTGATGGTCCACTGAAAAACATAGATATTTTTACAGTATGGTTCAGAGCAGTAGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| 3UTR-3UTR CCA 90 bp | ACACTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATCAGGTTAAGAACTGCTaGGCTAGACCATCCACAAAG | + |
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Preference number: 2 (lower is better) Translates to: TLKNRFIETQPCPMVYTHQVKNC*ARPSTK Trigger: CTTTGTGGATGGTCTAGCCCAGCAGTTCTTAACCTG...ATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAGTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| 3UTR-3UTR TCA 90 bp | CTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATAGCCTGCTATGTAAACAATaGCAGAGATCAAGGGAAACA | + |
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Preference number: 2 (lower is better) Translates to: LKNRFIETQPCPMVYTHSLLCKQ*QRSRET Trigger: TGTTTCCCTTGATCTCTGTCATTGTTTACATAGCAG...GCTATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| 3UTR TCA 72 bp | CCTGCATTTGCCATGCTCAGCAAACCCTCCCGATCATaGTGTCTGTTCTTAAAACGGGAATGGTGCAATACA | + |
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Preference number: 3 (lower is better) Translates to: PAFAMLSKPSRS*CLFLKREWCNT Trigger: TGTATTGCACCATTCCCGTTTTAAGAACAGACATCATGATCGGGAGGGTTTGCTGAGCATGGCAAATGCAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159505.3 |
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| 3UTR TCA 72 bp | AAGAAGGAACCTGTGTCAGCACTGCTATGTAAACAATaGCAGAGATCAAGGGAAACACAACAGGGAGCATGT | + |
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Preference number: 3 (lower is better) Translates to: KKEPVSALLCKQ*QRSRETQQGAC Trigger: ACATGCTCCCTGTTGTGTTTCCCTTGATCTCTGTCATTGTTTACATAGCAGTGCTGACACAGGTTCCTTCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| 3UTR GCA 72 bp | TTTAACTCTTTATTAAGAAGGAACCTGTGTCAGCACTaGTATGTAAACAATGACAGAGATCAAGGGAAACAC | + |
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Preference number: 3 (lower is better) Translates to: FNSLLRRNLCQH*YVNNDRDQGKH Trigger: GTGTTTCCCTTGATCTCTGTCATTGTTTACATAGCAGTGCTGACACAGGTTCCTTCTTAATAAAGAGTTAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR CCA 90 bp | TATTGGGGCCTGCATTTGCCATGCTCAGCAAACCCTCCCGATCATGATGTCTGTGGGCATCCTTTAAAATaGAGAGGCTTCCCGGTCGTG | + |
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Preference number: 4 (lower is better) Translates to: YWGLHLPCSANPPDHDVCGHPLK*RGFPVV Trigger: CACGACCGGGAAGCCTCTCCATTTTAAAGGATGCCC...ACAGACATCATGATCGGGAGGGTTTGCTGAGCATGGCAAATGCAGGCCCCAATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159505.3 |
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| CDS-3UTR TCA 90 bp | TGCCATGCTCAGCAAACCCTCCCGATCATGATGTCTGTTCTTAAAACGGGAATGCCACCTGTCCCATTCTaGTTTGAGAAGTCTCCACCC | + |
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Preference number: 4 (lower is better) Translates to: CHAQQTLPIMMSVLKTGMPPVPF*FEKSPP Trigger: GGGTGGAGACTTCTCAAATCAGAATGGGACAGGTGG...CATTCCCGTTTTAAGAACAGACATCATGATCGGGAGGGTTTGCTGAGCATGGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159505.3 |
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| CDS-3UTR CCA 90 bp | ATCAGGTTAAGAACTGCTGGGCTAGACCATCCACAAAGCCGAAAATTTAGTGAGAGACTCGCGGGTTCTTaGAGTTGGAGGGCTTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: IRLRTAGLDHPQSRKFSERLAGS*SWRAWL Trigger: CAGCCAAGCCCTCCAACTCCAAGAACCCGCGAGTCT...CTCACTAAATTTTCGGCTTTGTGGATGGTCTAGCCCAGCAGTTCTTAACCTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR TCA 90 bp | TATTGGGGCCTGCATTTGCCATGCTCAGCAAACCCTCCCGATCATGATGTCTGTTGTCCCATTCTGATTTaGGAAGTCTCCACCCTGAAT | + |
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Preference number: 4 (lower is better) Translates to: YWGLHLPCSANPPDHDVCCPILI*EVSTLN Trigger: ATTCAGGGTGGAGACTTCTCAAATCAGAATGGGACA...ACAGACATCATGATCGGGAGGGTTTGCTGAGCATGGCAAATGCAGGCCCCAATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159505.3 |
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| CDS-3UTR CCA 90 bp | ACACTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATGCGGGTTCTTGGAGTTaGAGGGCTTGGCTGCCGGGG | + |
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Preference number: 4 (lower is better) Translates to: TLKNRFIETQPCPMVYTHAGSWS*RAWLPG Trigger: CCCCGGCAGCCAAGCCCTCCAACTCCAAGAACCCGC...ATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAGTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR GCA 90 bp | ACACTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATGTTGGAGGGCTTGGCTaGCGGGGATGCGTGGGACAT | + |
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Preference number: 4 (lower is better) Translates to: TLKNRFIETQPCPMVYTHVGGLG*RGCVGH Trigger: ATGTCCCACGCATCCCCGGCAGCCAAGCCCTCCAAC...ATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAGTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR CCA 90 bp | ATCAGGTTAAGAACTGCTGGGCTAGACCATCCACAAAGCCGAAAATTTAGTGAGGGGCATCCTTTAAAATaGAGAGGCTTCCCGGTCGTG | + |
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Preference number: 4 (lower is better) Translates to: IRLRTAGLDHPQSRKFSEGHPLK*RGFPVV Trigger: CACGACCGGGAAGCCTCTCCATTTTAAAGGATGCCC...CTCACTAAATTTTCGGCTTTGTGGATGGTCTAGCCCAGCAGTTCTTAACCTGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR TCA 90 bp | ATCAGGTTAAGAACTGCTGGGCTAGACCATCCACAAAGCCGAAAATTTAGTGAGTGCCCCCTGCCAATTTaGCATCTTCAGCTTACAAGC | + |
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Preference number: 4 (lower is better) Translates to: IRLRTAGLDHPQSRKFSECPLPI*HLQLTS Trigger: GCTTGTAAGCTGAAGATGTCAAATTGGCAGGGGGCA...CTCACTAAATTTTCGGCTTTGTGGATGGTCTAGCCCAGCAGTTCTTAACCTGAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR GCA 90 bp | ATCAGGTTAAGAACTGCTGGGCTAGACCATCCACAAAGCCGAAAATTTAGTGAGCTGTCAATTGCCCCCTaGCAATTTGACATCTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: IRLRTAGLDHPQSRKFSELSIAP*QFDIFS Trigger: GCTGAAGATGTCAAATTGGCAGGGGGCAATTGACAG...CTCACTAAATTTTCGGCTTTGTGGATGGTCTAGCCCAGCAGTTCTTAACCTGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR CCA 90 bp | CAGCAAACCCTCCCGATCATGATGTCTGTTCTTAAAACGGGAATGGTGCAATACAATCCCCTGACATCCTaGGTATTAGCGATGGTTTTG | + |
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Preference number: 4 (lower is better) Translates to: QQTLPIMMSVLKTGMVQYNPLTS*VLAMVL Trigger: CAAAACCATCGCTAATACCCAGGATGTCAGGGGATT...GTATTGCACCATTCCCGTTTTAAGAACAGACATCATGATCGGGAGGGTTTGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000159505.3 |
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| CDS-3UTR TCA 90 bp | ATCAGGTTAAGAACTGCTGGGCTAGACCATCCACAAAGCCGAAAATTTAGTGAGTGTCCCATTCTGATTTaGGAAGTCTCCACCCTGAAT | + |
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Preference number: 4 (lower is better) Translates to: IRLRTAGLDHPQSRKFSECPILI*EVSTLN Trigger: ATTCAGGGTGGAGACTTCTCAAATCAGAATGGGACA...CTCACTAAATTTTCGGCTTTGTGGATGGTCTAGCCCAGCAGTTCTTAACCTGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR TCA 90 bp | CTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATAGCCCACCTGTCCCATTCTaGTTTGAGAAGTCTCCACCC | + |
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Preference number: 4 (lower is better) Translates to: LKNRFIETQPCPMVYTHSPPVPF*FEKSPP Trigger: GGGTGGAGACTTCTCAAATCAGAATGGGACAGGTGG...GCTATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR TCA 90 bp | CTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATAGCTCAGGGAAGTCTGGATaGCTGTCACCAGAGCCATCT | + |
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Preference number: 4 (lower is better) Translates to: LKNRFIETQPCPMVYTHSSGKSG*LSPEPS Trigger: AGATGGCTCTGGTGACAGTCATCCAGACTTCCCTGA...GCTATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR GCA 90 bp | ACACTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATGGCCTGCATTTGCCATaGTCAGCAAACCCTCCCGAT | + |
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Preference number: 4 (lower is better) Translates to: TLKNRFIETQPCPMVYTHGLHLP*SANPPD Trigger: ATCGGGAGGGTTTGCTGAGCATGGCAAATGCAGGCC...ATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAGTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR GCA 90 bp | CTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATAGCATTGGGGCCTGCATTTaGCATGCTCAGCAAACCCTC | + |
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Preference number: 4 (lower is better) Translates to: LKNRFIETQPCPMVYTHSIGACI*HAQQTL Trigger: GAGGGTTTGCTGAGCATGGCAAATGCAGGCCCCAAT...GCTATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR CCA 90 bp | CTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATAGCATCCTCAGGGAAGTCTaGATGACTGTCACCAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: LKNRFIETQPCPMVYTHSILREV*MTVTRA Trigger: GGCTCTGGTGACAGTCATCCAGACTTCCCTGAGGAT...GCTATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR TCA 90 bp | ACACTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATTGTTTCCCGTCCAGATaGGGAGTCGGAACTGTTGTG | + |
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Preference number: 4 (lower is better) Translates to: TLKNRFIETQPCPMVYTHCFPSR*GVGTVV Trigger: CACAACAGTTCCGACTCCTCATCTGGACGGGAAACA...ATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAGTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR GCA 90 bp | CTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATAGCTGGGGCTATCTCCTGTaGCTTCTTAAGATCAGCCAA | + |
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Preference number: 4 (lower is better) Translates to: LKNRFIETQPCPMVYTHSWGYLL*LLKISQ Trigger: TTGGCTGATCTTAAGAAGGCACAGGAGATAGCCCCA...GCTATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR CCA 90 bp | ACACTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATCACCAGAGCCATCTTTaGGGAAGATTCCCCAGTCAT | + |
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Preference number: 4 (lower is better) Translates to: TLKNRFIETQPCPMVYTHHQSHL*GRFPSH Trigger: ATGACTGGGGAATCTTCCCCAAAGATGGCTCTGGTG...ATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAGTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR GCA 90 bp | ACACTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATATTCGTATTGGGGCCTaGATTTGCCATGCTCAGCAA | + |
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Preference number: 4 (lower is better) Translates to: TLKNRFIETQPCPMVYTHIRIGA*ICHAQQ Trigger: TTGCTGAGCATGGCAAATGCAGGCCCCAATACGAAT...ATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAGTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR GCA 90 bp | ACACTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATAATCCTTGCCATCCTTaGGCTTTTCGGTATAGTGCT | + |
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Preference number: 4 (lower is better) Translates to: TLKNRFIETQPCPMVYTHNPCHP*AFRYSA Trigger: AGCACTATACCGAAAAGCGCAAGGATGGCAAGGATT...ATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAGTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR TCA 90 bp | ACACTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATCACCTAGTCCTTTTATaGCCTGACCAAATACCACAT | + |
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Preference number: 4 (lower is better) Translates to: TLKNRFIETQPCPMVYTHHLVLL*PDQIPH Trigger: ATGTGGTATTTGGTCAGGTCATAAAAGGACTAGGTG...ATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAGTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR GCA 90 bp | CTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATAGCCAGTCTGGATCTATCTaGTTTCTCAATAACAGCCTT | + |
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Preference number: 4 (lower is better) Translates to: LKNRFIETQPCPMVYTHSQSGSI*FLNNSL Trigger: AAGGCTGTTATTGAGAAAGCAGATAGATCCAGACTG...GCTATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR CCA 90 bp | ACACTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATTTAAGCAATTCTGCCTaGATAGCTTTATCTCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: TLKNRFIETQPCPMVYTHLSNSA*IALSPG Trigger: CCCAGGAGATAAAGCTATCCAGGCAGAATTGCTTAA...ATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAGTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR GCA 90 bp | ACACTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATCAATTCTCCACATTCTaGAATAACACAGAGTTTGGC | + |
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Preference number: 4 (lower is better) Translates to: TLKNRFIETQPCPMVYTHQFSTF*NNTEFG Trigger: GCCAAACTCTGTGTTATTGCAGAATGTGGAGAATTG...ATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAGTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR GCA 90 bp | ACACTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATTTAAGCAAACATTTTTaGATACACGGCCTTCTCTTT | + |
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Preference number: 4 (lower is better) Translates to: TLKNRFIETQPCPMVYTHLSKHF*IHGLLF Trigger: AAAGAGAAGGCCGTGTATGCAAAAATGTTTGCTTAA...ATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAGTGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR CAA 90 bp | CGTATTGGGGCCTGCATTTGCCATGCTCAGCAAACCCTCCCGATCATGATGTCTCTGTCCCATTCTGATTaGAGAAGTCTCCACCCTGAA | + |
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Preference number: 5 (lower is better) Translates to: RIGACICHAQQTLPIMMSLSHSD*RSLHPE Trigger: TTCAGGGTGGAGACTTCTCAAATCAGAATGGGACAG...AGACATCATGATCGGGAGGGTTTGCTGAGCATGGCAAATGCAGGCCCCAATACG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159505.3 |
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| CDS-3UTR CAA 90 bp | ACACTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATCGCGGGTTCTTGGAGTaGGAGGGCTTGGCTGCCGGG | + |
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Preference number: 5 (lower is better) Translates to: TLKNRFIETQPCPMVYTHRGFLE*EGLAAG Trigger: CCCGGCAGCCAAGCCCTCCAACTCCAAGAACCCGCG...ATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAGTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS TCA 90 bp | TCACCTCTACATTTTCAAGCGTCCTTGCCACACCTAGTCCTTTTATaGCCTGACCAAATACCACATGTTTCCCGTCCAGATGAGGAGTCG | + |
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Preference number: 5 (lower is better) Translates to: SPLHFQASLPHLVLL*PDQIPHVSRPDEES Trigger: CGACTCCTCATCTGGACGGGAAACATGTGGTATTTGGTCAGGTCATAAAAGGACTAGGTGTGGCAAGGACGCTTGAAAATGTAGAGGTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR CAA 90 bp | ATCAGGTTAAGAACTGCTGGGCTAGACCATCCACAAAGCCGAAAATTTAGTGAGTATTGGGGCCTGCATTaGCCATGCTCAGCAAACCCT | + |
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Preference number: 5 (lower is better) Translates to: IRLRTAGLDHPQSRKFSEYWGLH*PCSANP Trigger: AGGGTTTGCTGAGCATGGCAAATGCAGGCCCCAATA...CTCACTAAATTTTCGGCTTTGTGGATGGTCTAGCCCAGCAGTTCTTAACCTGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR CAA 90 bp | CTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATAGCAAGACTCGCGGGTTCTaGGAGTTGGAGGGCTTGGCT | + |
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Preference number: 5 (lower is better) Translates to: LKNRFIETQPCPMVYTHSKTRGF*ELEGLA Trigger: AGCCAAGCCCTCCAACTCCAAGAACCCGCGAGTCTT...GCTATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS GCA 90 bp | GAAGGGTCCATTTCAAGAGCCTCTAAGCAACTGTCAATTGCCCCCTaGCAATTTGACATCTTCAGCTTACAAGCACCAATATTCAGCACA | + |
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Preference number: 5 (lower is better) Translates to: EGSISRASKQLSIAP*QFDIFSLQAPIFST Trigger: TGTGCTGAATATTGGTGCTTGTAAGCTGAAGATGTCAAATTGGCAGGGGGCAATTGACAGTTGCTTAGAGGCTCTTGAAATGGACCCTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR CAA 90 bp | ATCAGGTTAAGAACTGCTGGGCTAGACCATCCACAAAGCCGAAAATTTAGTGAGCTGTCCCATTCTGATTaGAGAAGTCTCCACCCTGAA | + |
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Preference number: 5 (lower is better) Translates to: IRLRTAGLDHPQSRKFSELSHSD*RSLHPE Trigger: TTCAGGGTGGAGACTTCTCAAATCAGAATGGGACAG...CTCACTAAATTTTCGGCTTTGTGGATGGTCTAGCCCAGCAGTTCTTAACCTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR CAA 90 bp | CTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATAGCTCACCAGAGCCATCTTaGGGGAAGATTCCCCAGTCA | + |
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Preference number: 5 (lower is better) Translates to: LKNRFIETQPCPMVYTHSSPEPS*GKIPQS Trigger: TGACTGGGGAATCTTCCCCAAAGATGGCTCTGGTGA...GCTATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS CCA 90 bp | ATCATAAATTTCTTAATAATTCGGTGGAAAGGGCATCCTTTAAAATaGAGAGGCTTCCCGGTCGTGGACCCAGTTCCTTTTTCTCCTGTA | + |
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Preference number: 5 (lower is better) Translates to: IINFLIIRWKGHPLK*RGFPVVDPVPFSPV Trigger: TACAGGAGAAAAAGGAACTGGGTCCACGACCGGGAAGCCTCTCCATTTTAAAGGATGCCCTTTCCACCGAATTATTAAGAAATTTATGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS CCA 90 bp | TCTTTCTGTGCCTTTATCATTTGTTTGACTTTAAGCAATTCTGCCTaGATAGCTTTATCTCCTGGGGCTATCTCCTGTGCCTTCTTAAGA | + |
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Preference number: 5 (lower is better) Translates to: SFCAFIICLTLSNSA*IALSPGAISCAFLR Trigger: TCTTAAGAAGGCACAGGAGATAGCCCCAGGAGATAAAGCTATCCAGGCAGAATTGCTTAAAGTCAAACAAATGATAAAGGCACAGAAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR CAA 90 bp | CTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATAGCCATTTTCAAGCGTCCTaGCCACACCTAGTCCTTTTA | + |
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Preference number: 5 (lower is better) Translates to: LKNRFIETQPCPMVYTHSHFQAS*PHLVLL Trigger: TAAAAGGACTAGGTGTGGCAAGGACGCTTGAAAATG...GCTATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR CAA 90 bp | ACACTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATTTGCCCCCTGCCAATTaGACATCTTCAGCTTACAAG | + |
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Preference number: 5 (lower is better) Translates to: TLKNRFIETQPCPMVYTHLPPAN*TSSAYK Trigger: CTTGTAAGCTGAAGATGTCAAATTGGCAGGGGGCAA...ATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAGTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR CAA 90 bp | ATCAGGTTAAGAACTGCTGGGCTAGACCATCCACAAAGCCGAAAATTTAGTGAGAAGATCAGCCAATGCTaGATCATATTCTTTCAATCC | + |
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Preference number: 5 (lower is better) Translates to: IRLRTAGLDHPQSRKFSEKISQC*IIFFQS Trigger: GGATTGAAAGAATATGATCAAGCATTGGCTGATCTT...CTCACTAAATTTTCGGCTTTGTGGATGGTCTAGCCCAGCAGTTCTTAACCTGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS GCA 90 bp | AGCTTACAAGCACCAATATTCAGCACACAACTTAAGGCTATAGGTTaGAGTCTGGATCTATCTGCTTTCTCAATAACAGCCTTTGAACTA | + |
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Preference number: 5 (lower is better) Translates to: SLQAPIFSTQLKAIG*SLDLSAFSITAFEL Trigger: TAGTTCAAAGGCTGTTATTGAGAAAGCAGATAGATCCAGACTGCAACCTATAGCCTTAAGTTGTGTGCTGAATATTGGTGCTTGTAAGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS GCA 90 bp | TTTATCTTTCTGTGCCTTTATCATTTGTTTGACTTTAAGCAATTCTaGCTGGATAGCTTTATCTCCTGGGGCTATCTCCTGTGCCTTCTT | + |
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Preference number: 5 (lower is better) Translates to: FIFLCLYHLFDFKQF*LDSFISWGYLLCLL Trigger: AAGAAGGCACAGGAGATAGCCCCAGGAGATAAAGCTATCCAGGCAGAATTGCTTAAAGTCAAACAAATGATAAAGGCACAGAAAGATAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS-3UTR CAA 90 bp | ACACTTAAAAACCGATTTATTGAAACACAGCCATGCCCGATGGTTTATACACATGCCTTTATCATTTGTTaGACTTTAAGCAATTCTGCC | + |
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Preference number: 5 (lower is better) Translates to: TLKNRFIETQPCPMVYTHAFIIC*TLSNSA Trigger: GGCAGAATTGCTTAAAGTCAAACAAATGATAAAGGC...ATGTGTATAAACCATCGGGCATGGCTGTGTTTCAATAAATCGGTTTTTAAGTGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS CCA 72 bp | CGCCGATGTCCACGTCAAAGAAGACTCGCGGGTTCTTaGAGTTGGAGGGCTTGGCTGCCGGGGATGCGTGGG | + |
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Preference number: 6 (lower is better) Translates to: RRCPRQRRLAGS*SWRAWLPGMRG Trigger: CCCACGCATCCCCGGCAGCCAAGCCCTCCAACTCCAAGAACCCGCGAGTCTTCTTTGACGTGGACATCGGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS CAA 72 bp | CCGCCGATGTCCACGTCAAAGAAGACTCGCGGGTTCTaGGAGTTGGAGGGCTTGGCTGCCGGGGATGCGTGG | + |
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Preference number: 6 (lower is better) Translates to: PPMSTSKKTRGF*ELEGLAAGDAW Trigger: CCACGCATCCCCGGCAGCCAAGCCCTCCAACTCCAAGAACCCGCGAGTCTTCTTTGACGTGGACATCGGCGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS TCA 72 bp | CATTTTCAAGCGTCCTTGCCACACCTAGTCCTTTTATaGCCTGACCAAATACCACATGTTTCCCGTCCAGAT | + |
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Preference number: 6 (lower is better) Translates to: HFQASLPHLVLL*PDQIPHVSRPD Trigger: ATCTGGACGGGAAACATGTGGTATTTGGTCAGGTCATAAAAGGACTAGGTGTGGCAAGGACGCTTGAAAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS GCA 72 bp | TGCCTGGATAGCTTTATCTCCTGGGGCTATCTCCTGTaGCTTCTTAAGATCAGCCAATGCTTGATCATATTC | + |
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Preference number: 6 (lower is better) Translates to: CLDSFISWGYLL*LLKISQCLIIF Trigger: GAATATGATCAAGCATTGGCTGATCTTAAGAAGGCACAGGAGATAGCCCCAGGAGATAAAGCTATCCAGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS CCA 72 bp | TTCTTAATAATTCGGTGGAAAGGGCATCCTTTAAAATaGAGAGGCTTCCCGGTCGTGGACCCAGTTCCTTTT | + |
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Preference number: 6 (lower is better) Translates to: FLIIRWKGHPLK*RGFPVVDPVPF Trigger: AAAAGGAACTGGGTCCACGACCGGGAAGCCTCTCCATTTTAAAGGATGCCCTTTCCACCGAATTATTAAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029382.13 ENSMUST00000159505.3 |
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| CDS CAA 72 bp | GAGCCTCTAAGCAACTGTCAATTGCCCCCTGCCAATTaGACATCTTCAGCTTACAAGCACCAATATTCAGCA | + |
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Preference number: 6 (lower is better) Translates to: EPLSNCQLPPAN*TSSAYKHQYSA Trigger: TGCTGAATATTGGTGCTTGTAAGCTGAAGATGTCAAATTGGCAGGGGGCAATTGACAGTTGCTTAGAGGCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS CAA 72 bp | AAGGGTCCATTTCAAGAGCCTCTAAGCAACTGTCAATaGCCCCCTGCCAATTTGACATCTTCAGCTTACAAG | + |
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Preference number: 6 (lower is better) Translates to: KGPFQEPLSNCQ*PPANLTSSAYK Trigger: CTTGTAAGCTGAAGATGTCAAATTGGCAGGGGGCAATTGACAGTTGCTTAGAGGCTCTTGAAATGGACCCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS CCA 72 bp | GCCTTTATCATTTGTTTGACTTTAAGCAATTCTGCCTaGATAGCTTTATCTCCTGGGGCTATCTCCTGTGCC | + |
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Preference number: 6 (lower is better) Translates to: AFIICLTLSNSA*IALSPGAISCA Trigger: GGCACAGGAGATAGCCCCAGGAGATAAAGCTATCCAGGCAGAATTGCTTAAAGTCAAACAAATGATAAAGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS CAA 90 bp | CCATTTCAAGAGCCTCTAAGCAACTGTCAATTGCCCCCTGCCAATTaGACATCTTCAGCTTACAAGCACCAATATTCAGCACACAACTTA | + |
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Preference number: 6 (lower is better) Translates to: PFQEPLSNCQLPPAN*TSSAYKHQYSAHNL Trigger: TAAGTTGTGTGCTGAATATTGGTGCTTGTAAGCTGAAGATGTCAAATTGGCAGGGGGCAATTGACAGTTGCTTAGAGGCTCTTGAAATGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS GCA 72 bp | GCACCAATATTCAGCACACAACTTAAGGCTATAGGTTaGAGTCTGGATCTATCTGCTTTCTCAATAACAGCC | + |
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Preference number: 6 (lower is better) Translates to: APIFSTQLKAIG*SLDLSAFSITA Trigger: GGCTGTTATTGAGAAAGCAGATAGATCCAGACTGCAACCTATAGCCTTAAGTTGTGTGCTGAATATTGGTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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| CDS GCA 72 bp | ATTTCAAGAGCCTCTAAGCAACTGTCAATTGCCCCCTaGCAATTTGACATCTTCAGCTTACAAGCACCAATA | + |
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Preference number: 6 (lower is better) Translates to: ISRASKQLSIAP*QFDIFSLQAPI Trigger: TATTGGTGCTTGTAAGCTGAAGATGTCAAATTGGCAGGGGGCAATTGACAGTTGCTTAGAGGCTCTTGAAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029382.13 |
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