Pregenerated sensors for PPIC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024538Ensembl transcript IDs: ENSMUST00000025419.9
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCTGGCCTTGAACCCCTGATCCTCCTGCCTGCACTTCCCAAATACTaGGATGACAGGTGTTTGTTGAGACATCTGACTGTGTGGTTGATT | + |
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Preference number: 1 (lower is better) Translates to: AGLEPLILLPALPKY*DDRCLLRHLTVWLI Trigger: AATCAACCACACAGTCAGATGTCTCAACAAACACCTGTCATCCCAGTATTTGGGAAGTGCAGGCAGGAGGATCAGGGGTTCAAGGCCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| 3UTR TCA 90 bp | AAACAAACCCTCGGGTCACCCAAATGGAGATCACAAGGAACCGTGTaGAACTCAACCATGTTTGTAAAAACAAATAGCCAATGCAAAGTT | + |
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Preference number: 1 (lower is better) Translates to: KQTLGSPKWRSQGTV*NSTMFVKTNSQCKV Trigger: AACTTTGCATTGGCTATTTGTTTTTACAAACATGGTTGAGTTTCACACGGTTCCTTGTGATCTCCATTTGGGTGACCCGAGGGTTTGTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| 3UTR-3UTR TCA 90 bp | GAAAATGCTAACCTTCATTATAGTCACCTTCCTCAAACAAACCCTCGGGTCACCCTGGCCTTGAACCCCTaGTCCTCCTGCCTGCACTTC | + |
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Preference number: 2 (lower is better) Translates to: ENANLHYSHLPQTNPRVTLALNP*SSCLHF Trigger: GAAGTGCAGGCAGGAGGATCAGGGGTTCAAGGCCAG...GGTGACCCGAGGGTTTGTTTGAGGAAGGTGACTATAATGAAGGTTAGCATTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| 3UTR-3UTR GCA 90 bp | GAAAATGCTAACCTTCATTATAGTCACCTTCCTCAAACAAACCCTCGGGTCACCGGTGGATCACAGATGTaGACATGGGCCAGCCAGTGT | + |
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Preference number: 2 (lower is better) Translates to: ENANLHYSHLPQTNPRVTGGSQM*TWASQC Trigger: ACACTGGCTGGCCCATGTGCACATCTGTGATCCACC...GGTGACCCGAGGGTTTGTTTGAGGAAGGTGACTATAATGAAGGTTAGCATTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| 3UTR-3UTR CCA 90 bp | GAAAATGCTAACCTTCATTATAGTCACCTTCCTCAAACAAACCCTCGGGTCACCGCACTTCCCAAATACTaGGATGACAGGTGTTTGTTG | + |
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Preference number: 2 (lower is better) Translates to: ENANLHYSHLPQTNPRVTALPKY*DDRCLL Trigger: CAACAAACACCTGTCATCCCAGTATTTGGGAAGTGC...GGTGACCCGAGGGTTTGTTTGAGGAAGGTGACTATAATGAAGGTTAGCATTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| 3UTR CCA 72 bp | GAACCCCTGATCCTCCTGCCTGCACTTCCCAAATACTaGGATGACAGGTGTTTGTTGAGACATCTGACTGTG | + |
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Preference number: 3 (lower is better) Translates to: EPLILLPALPKY*DDRCLLRHLTV Trigger: CACAGTCAGATGTCTCAACAAACACCTGTCATCCCAGTATTTGGGAAGTGCAGGCAGGAGGATCAGGGGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| 3UTR TCA 72 bp | CTCGGGTCACCCAAATGGAGATCACAAGGAACCGTGTaGAACTCAACCATGTTTGTAAAAACAAATAGCCAA | + |
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Preference number: 3 (lower is better) Translates to: LGSPKWRSQGTV*NSTMFVKTNSQ Trigger: TTGGCTATTTGTTTTTACAAACATGGTTGAGTTTCACACGGTTCCTTGTGATCTCCATTTGGGTGACCCGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| 3UTR-3UTR CAA 90 bp | GAACAAGAACTATTTGAACAGAAAATGCTAACCTTCATTATAGTCACCTTCCTCCATCTGACTGTGTGGTaGATTTTGTTATTGCAATCG | + |
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Preference number: 3 (lower is better) Translates to: EQELFEQKMLTFIIVTFLHLTVW*ILLLQS Trigger: CGATTGCAATAACAAAATCAACCACACAGTCAGATG...GAGGAAGGTGACTATAATGAAGGTTAGCATTTTCTGTTCAAATAGTTCTTGTTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS-3UTR GCA 90 bp | ATCACAGATGTGCACATGGGCCAGCCAGTGTGTTTCCTGTCTTCCGCCATTTCTATGTCTCACCATAGATaGTCATCCCTCCAGTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: ITDVHMGQPVCFLSSAISMSHHR*SSLQCH Trigger: ATGGCACTGGAGGGATGAGCATCTATGGTGAGACAT...AGAAATGGCGGAAGACAGGAAACACACTGGCTGGCCCATGTGCACATCTGTGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS-3UTR CCA 90 bp | GACTGCTGGTGGATCACAGATGTGCACATGGGCCAGCCAGTGTGTTTCCTGTCTTTGCTTGAAGTTCAATaGAATGTACCACAGTCATCC | + |
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Preference number: 4 (lower is better) Translates to: DCWWITDVHMGQPVCFLSLLEVQ*NVPQSS Trigger: GGATGACTGTGGTACATTCCATTGAACTTCAAGCAA...AGACAGGAAACACACTGGCTGGCCCATGTGCACATCTGTGATCCACCAGCAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS-3UTR TCA 90 bp | ACTAAAAGACTGCTGGTGGATCACAGATGTGCACATGGGCCAGCCAGTGTGTTTTGGCCATCTGTTGCTTaGAGTTCAATGGAATGTACC | + |
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Preference number: 4 (lower is better) Translates to: TKRLLVDHRCAHGPASVFWPSVA*SSMECT Trigger: GGTACATTCCATTGAACTTCAAGCAACAGATGGCCA...AAACACACTGGCTGGCCCATGTGCACATCTGTGATCCACCAGCAGTCTTTTAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS-3UTR CAA 90 bp | GACTGCTGGTGGATCACAGATGTGCACATGGGCCAGCCAGTGTGTTTCCTGTCTGTGTCTGGTCCAGCATaGGCCATGCTGACCCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: DCWWITDVHMGQPVCFLSVSGPA*AMLTQP Trigger: TGGCTGGGTCAGCATGGCCAATGCTGGACCAGACAC...AGACAGGAAACACACTGGCTGGCCCATGTGCACATCTGTGATCCACCAGCAGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS-3UTR CAA 90 bp | GACTGCTGGTGGATCACAGATGTGCACATGGGCCAGCCAGTGTGTTTCCTGTCTACATCAAAGAAGACCTaGTCCGTCACCGAGGGACCT | + |
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Preference number: 5 (lower is better) Translates to: DCWWITDVHMGQPVCFLSTSKKT*SVTEGP Trigger: AGGTCCCTCGGTGACGGACAAGGTCTTCTTTGATGT...AGACAGGAAACACACTGGCTGGCCCATGTGCACATCTGTGATCCACCAGCAGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS-3UTR CAA 90 bp | ACTAAAAGACTGCTGGTGGATCACAGATGTGCACATGGGCCAGCCAGTGTGTTTTCCAACCAGGTGGGCTaGGTCAAGGTGATGAAGAAC | + |
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Preference number: 5 (lower is better) Translates to: TKRLLVDHRCAHGPASVFSNQVG*VKVMKN Trigger: GTTCTTCATCACCTTGACCAAGCCCACCTGGTTGGA...AAACACACTGGCTGGCCCATGTGCACATCTGTGATCCACCAGCAGTCTTTTAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS-3UTR CAA 90 bp | GACTGCTGGTGGATCACAGATGTGCACATGGGCCAGCCAGTGTGTTTCCTGTCTGGTCATGGCCATCTGTaGCTTGAAGTTCAATGGAAT | + |
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Preference number: 5 (lower is better) Translates to: DCWWITDVHMGQPVCFLSGHGHL*LEVQWN Trigger: ATTCCATTGAACTTCAAGCAACAGATGGCCATGACC...AGACAGGAAACACACTGGCTGGCCCATGTGCACATCTGTGATCCACCAGCAGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS-3UTR CAA 90 bp | ACTAAAAGACTGCTGGTGGATCACAGATGTGCACATGGGCCAGCCAGTGTGTTTTCTATCTTGCCACTGTaGACGATGGTGCAGTCGGTG | + |
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Preference number: 5 (lower is better) Translates to: TKRLLVDHRCAHGPASVFSILPL*TMVQSV Trigger: CACCGACTGCACCATCGTCAACAGTGGCAAGATAGA...AAACACACTGGCTGGCCCATGTGCACATCTGTGATCCACCAGCAGTCTTTTAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS CCA 90 bp | TTTCACATCTATCTTGCCACTGTTGACGATGGTGCAGTCGGTGAGTaGGCGGTCATGGCCATCTGTTGCTTGAAGTTCAATGGAATGTAC | + |
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Preference number: 5 (lower is better) Translates to: FHIYLATVDDGAVGE*AVMAICCLKFNGMY Trigger: GTACATTCCATTGAACTTCAAGCAACAGATGGCCATGACCGCCCACTCACCGACTGCACCATCGTCAACAGTGGCAAGATAGATGTGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS-3UTR CAA 90 bp | GAAAATGCTAACCTTCATTATAGTCACCTTCCTCAAACAAACCCTCGGGTCACCGTTTTCACATCTATCTaGCCACTGTTGACGATGGTG | + |
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Preference number: 5 (lower is better) Translates to: ENANLHYSHLPQTNPRVTVFTSI*PLLTMV Trigger: CACCATCGTCAACAGTGGCAAGATAGATGTGAAAAC...GGTGACCCGAGGGTTTGTTTGAGGAAGGTGACTATAATGAAGGTTAGCATTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS-3UTR CAA 90 bp | GAACAAGAACTATTTGAACAGAAAATGCTAACCTTCATTATAGTCACCTTCCTCATTCTACCCACATCTTaGTCTCCGATCCTCACATCA | + |
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Preference number: 5 (lower is better) Translates to: EQELFEQKMLTFIIVTFLILPTS*SPILTS Trigger: TGATGTGAGGATCGGAGACAAAGATGTGGGTAGAAT...GAGGAAGGTGACTATAATGAAGGTTAGCATTTTCTGTTCAAATAGTTCTTGTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS TCA 72 bp | CTTGTCCGTCACCGAGGGACCTCGTTTTCGGACGCCTaGGGACCCCGAAGAAGACACCAGGGCTCCAAGCCC | + |
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Preference number: 6 (lower is better) Translates to: LVRHRGTSFSDA*GPRRRHQGSKP Trigger: GGGCTTGGAGCCCTGGTGTCTTCTTCGGGGTCCTCAGGCGTCCGAAAACGAGGTCCCTCGGTGACGGACAAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS CAA 90 bp | GGGACCTCAACCACAAAGGGTGTTTTCACATCTATCTTGCCACTGTaGACGATGGTGCAGTCGGTGAGTGGGCGGTCATGGCCATCTGTT | + |
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Preference number: 6 (lower is better) Translates to: GTSTTKGVFTSILPL*TMVQSVSGRSWPSV Trigger: AACAGATGGCCATGACCGCCCACTCACCGACTGCACCATCGTCAACAGTGGCAAGATAGATGTGAAAACACCCTTTGTGGTTGAGGTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS CAA 90 bp | CACCAATCAGGGACCTCAACCACAAAGGGTGTTTTCACATCTATCTaGCCACTGTTGACGATGGTGCAGTCGGTGAGTGGGCGGTCATGG | + |
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Preference number: 6 (lower is better) Translates to: HQSGTSTTKGVFTSI*PLLTMVQSVSGRSW Trigger: CCATGACCGCCCACTCACCGACTGCACCATCGTCAACAGTGGCAAGATAGATGTGAAAACACCCTTTGTGGTTGAGGTCCCTGATTGGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS CAA 72 bp | GCAGTCGGTGAGTGGGCGGTCATGGCCATCTGTTGCTaGAAGTTCAATGGAATGTACCACAGTCATCCCATC | + |
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Preference number: 6 (lower is better) Translates to: AVGEWAVMAICC*KFNGMYHSHPI Trigger: GATGGGATGACTGTGGTACATTCCATTGAACTTCAAGCAACAGATGGCCATGACCGCCCACTCACCGACTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS CAA 72 bp | ACCACAAAGGGTGTTTTCACATCTATCTTGCCACTGTaGACGATGGTGCAGTCGGTGAGTGGGCGGTCATGG | + |
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Preference number: 6 (lower is better) Translates to: TTKGVFTSILPL*TMVQSVSGRSW Trigger: CCATGACCGCCCACTCACCGACTGCACCATCGTCAACAGTGGCAAGATAGATGTGAAAACACCCTTTGTGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS CAA 72 bp | GGGACCTCAACCACAAAGGGTGTTTTCACATCTATCTaGCCACTGTTGACGATGGTGCAGTCGGTGAGTGGG | + |
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Preference number: 6 (lower is better) Translates to: GTSTTKGVFTSI*PLLTMVQSVSG Trigger: CCCACTCACCGACTGCACCATCGTCAACAGTGGCAAGATAGATGTGAAAACACCCTTTGTGGTTGAGGTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS TCA 72 bp | CAGTCGGTGAGTGGGCGGTCATGGCCATCTGTTGCTTaGAGTTCAATGGAATGTACCACAGTCATCCCATCT | + |
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Preference number: 6 (lower is better) Translates to: QSVSGRSWPSVA*SSMECTTVIPS Trigger: AGATGGGATGACTGTGGTACATTCCATTGAACTTCAAGCAACAGATGGCCATGACCGCCCACTCACCGACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS CCA 72 bp | TATCTTGCCACTGTTGACGATGGTGCAGTCGGTGAGTaGGCGGTCATGGCCATCTGTTGCTTGAAGTTCAAT | + |
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Preference number: 6 (lower is better) Translates to: YLATVDDGAVGE*AVMAICCLKFN Trigger: ATTGAACTTCAAGCAACAGATGGCCATGACCGCCCACTCACCGACTGCACCATCGTCAACAGTGGCAAGATA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS CCA 72 bp | CTCCTGTTGCCAGAGCCACGAAGTTTTCCACCGTCTTaGGTACAACGTTTCCAAAGAGGCCAATCACAATTC | + |
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Preference number: 6 (lower is better) Translates to: LLLPEPRSFPPS*VQRFQRGQSQF Trigger: GAATTGTGATTGGCCTCTTTGGAAACGTTGTACCCAAGACGGTGGAAAACTTCGTGGCTCTGGCAACAGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS CCA 72 bp | GTGGGCGGTCATGGCCATCTGTTGCTTGAAGTTCAATaGAATGTACCACAGTCATCCCATCTAGGACTTTTC | + |
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Preference number: 6 (lower is better) Translates to: VGGHGHLLLEVQ*NVPQSSHLGLF Trigger: GAAAAGTCCTAGATGGGATGACTGTGGTACATTCCATTGAACTTCAAGCAACAGATGGCCATGACCGCCCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS CAA 72 bp | TCTCCTGTTGCCAGAGCCACGAAGTTTTCCACCGTCTaGGGTACAACGTTTCCAAAGAGGCCAATCACAATT | + |
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Preference number: 6 (lower is better) Translates to: SPVARATKFSTV*GTTFPKRPITI Trigger: AATTGTGATTGGCCTCTTTGGAAACGTTGTACCCAAGACGGTGGAAAACTTCGTGGCTCTGGCAACAGGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS CAA 90 bp | GGTACAACGTTTCCAAAGAGGCCAATCACAATTCTACCCACATCTTaGTCTCCGATCCTCACATCAAAGAAGACCTTGTCCGTCACCGAG | + |
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Preference number: 6 (lower is better) Translates to: GTTFPKRPITILPTS*SPILTSKKTLSVTE Trigger: CTCGGTGACGGACAAGGTCTTCTTTGATGTGAGGATCGGAGACAAAGATGTGGGTAGAATTGTGATTGGCCTCTTTGGAAACGTTGTACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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| CDS CAA 72 bp | TTTCCAAAGAGGCCAATCACAATTCTACCCACATCTTaGTCTCCGATCCTCACATCAAAGAAGACCTTGTCC | + |
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Preference number: 6 (lower is better) Translates to: FPKRPITILPTS*SPILTSKKTLS Trigger: GGACAAGGTCTTCTTTGATGTGAGGATCGGAGACAAAGATGTGGGTAGAATTGTGATTGGCCTCTTTGGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025419.9 |
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