RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PPFIBP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036528

Ensembl transcript IDs: ENSMUST00000040056.15, ENSMUST00000098134.5, ENSMUST00000208159.2, ENSMUST00000208956.2, ENSMUST00000239294.2

Found 338 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AAGGCACTTGAATTCTTCCCTCGACTGAAGAATAGGGGCAGCGTCTaGGAACTGAACCTTTTGCGATTACCCAGGGCCTGCCCTCTGCTC +
Preference number: 1 (lower is better)
Translates to: KALEFFPRLKNRGSV*ELNLLRLPRACPLL
Trigger: GAGCAGAGGGCAGGCCCTGGGTAATCGCAAAAGGTTCAGTTCTCAGACGCTGCCCCTATTCTTCAGTCGAGGGAAGAATTCAAGTGCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
3UTR TCA 90 bp TTGAGGCAGGTGAGGGGGAAATGTGTGTCTTGGAATGAGGGTAGATaGAAGCTGTTGGGGGATCAAGAGGAGAGTCCTGATTCACAGGCC +
Preference number: 1 (lower is better)
Translates to: LRQVRGKCVSWNEGR*KLLGDQEESPDSQA
Trigger: GGCCTGTGAATCAGGACTCTCCTCTTGATCCCCCAACAGCTTTCATCTACCCTCATTCCAAGACACACATTTCCCCCTCACCTGCCTCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR GCA 90 bp GACACAATTGTTTTCTGTAGATCATGCAAAAGGACGAGGGTGAAGTaGAGTTACGTGGTGACACACAGTGTTACTGTGAGCTCTCCGTGC +
Preference number: 1 (lower is better)
Translates to: DTIVFCRSCKRTRVK*SYVVTHSVTVSSPC
Trigger: GCACGGAGAGCTCACAGTAACACTGTGTGTCACCACGTAACTGCACTTCACCCTCGTCCTTTTGCATGATCTACAGAAAACAATTGTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
3UTR TCA 90 bp GAACAGCTTATACAACCTTTCCCCACCTCCAATCACAGGCTTTCATaGACTAACAGCTCATTGTCTTTGTTCTGCATTTACCACCTCACC +
Preference number: 1 (lower is better)
Translates to: EQLIQPFPTSNHRLS*TNSSLSLFCIYHLT
Trigger: GGTGAGGTGGTAAATGCAGAACAAAGACAATGAGCTGTTAGTTCATGAAAGCCTGTGATTGGAGGTGGGGAAAGGTTGTATAAGCTGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR TCA 90 bp CAGCTGGTTTGTGTATCGGGTACACATGTGCATATAACCTTAAAGTaGACTGTGAACATCTCAGAGGCATACAATGCTGAAGGGCAAAGT +
Preference number: 1 (lower is better)
Translates to: QLVCVSGTHVHITLK*TVNISEAYNAEGQS
Trigger: ACTTTGCCCTTCAGCATTGTATGCCTCTGAGATGTTCACAGTTCACTTTAAGGTTATATGCACATGTGTACCCGATACACAAACCAGCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR GCA 90 bp CAGCTCATTGTCTTTGTTCTGCATTTACCACCTCACCTTCACCTCTaGAGGATCAGCTGCAGTTGGCATATAAAAGTACAAAAGGTAGAA +
Preference number: 1 (lower is better)
Translates to: QLIVFVLHLPPHLHL*RISCSWHIKVQKVE
Trigger: TTCTACCTTTTGTACTTTTATATGCCAACTGCAGCTGATCCTGCAGAGGTGAAGGTGAGGTGGTAAATGCAGAACAAAGACAATGAGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR CCA 90 bp GGTACAATCAAATTACATTGTCACTATGGTCCAAACATCCGCTGTTaGCACTTTGATCTCAGCCAAGACTTTGTGGCTCACAAACCTAAG +
Preference number: 1 (lower is better)
Translates to: GTIKLHCHYGPNIRC*HFDLSQDFVAHKPK
Trigger: CTTAGGTTTGTGAGCCACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTGGACCATAGTGACAATGTAATTTGATTGTACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
3UTR CCA 90 bp AATAAAGGAAGTGAAGCAAACACAAATCGGTGGACTCACAAAGGTTaGCATGATGGTGGAAAGGTGGCATTCAAAGGAATTCAAAGCAGA +
Preference number: 1 (lower is better)
Translates to: NKGSEANTNRWTHKG*HDGGKVAFKGIQSR
Trigger: TCTGCTTTGAATTCCTTTGAATGCCACCTTTCCACCATCATGCCAACCTTTGTGAGTCCACCGATTTGTGTTTGCTTCACTTCCTTTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR-3UTR CCA 90 bp GCGCTGACAACACAGGGAAACGCGGGGACACGACTGGACACCTGTCCCACCCCTAGCTCCATCTCTTGGTaGCTCTGTGCCAACTCCCCA +
Preference number: 2 (lower is better)
Translates to: ALTTQGNAGTRLDTCPTPSSISW*LCANSP
Trigger: TGGGGAGTTGGCACAGAGCCACCAAGAGATGGAGCT...AGGGGTGGGACAGGTGTCCAGTCGTGTCCCCGCGTTTCCCTGTGTTGTCAGCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
3UTR CAA 90 bp GGAAACGCGGGGACACGACTGGACACCTGTCCCACCCCTCTGCTTTaGCTCCGGTCAACGCCTACATCCAAAGAGGCCCATAAGCTCCAT +
Preference number: 2 (lower is better)
Translates to: GNAGTRLDTCPTPLL*LRSTPTSKEAHKLH
Trigger: ATGGAGCTTATGGGCCTCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCCAGTCGTGTCCCCGCGTTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
3UTR-3UTR TCA 90 bp CACGACTGGACACCTGTCCCACCCCTCTGCTTTTGCTCCGGTCAACGCCTACATGTGCCAACTCCCCATTaGGGTGAACATTGGGGCTCC +
Preference number: 2 (lower is better)
Translates to: HDWTPVPPLCFCSGQRLHVPTPH*GEHWGS
Trigger: GGAGCCCCAATGTTCACCTCAATGGGGAGTTGGCAC...ATGTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCCAGTCGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
3UTR-3UTR GCA 90 bp TTGGGGGATCAAGAGGAGAGTCCTGATTCACAGGCCCAGGCTTCTGGAAGTGGACCTGTCCCACCCCTCTaGTTTTGCTCCGGTCAACGC +
Preference number: 2 (lower is better)
Translates to: LGDQEESPDSQAQASGSGPVPPL*FCSGQR
Trigger: GCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGG...TCCACTTCCAGAAGCCTGGGCCTGTGAATCAGGACTCTCCTCTTGATCCCCCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR-3UTR TCA 90 bp CCTCTGCTTTTGCTCCGGTCAACGCCTACATCCAAAGAGGCCCATAAGCTCCATGTGCCAACTCCCCATTaGGGTGAACATTGGGGCTCC +
Preference number: 2 (lower is better)
Translates to: PLLLLRSTPTSKEAHKLHVPTPH*GEHWGS
Trigger: GGAGCCCCAATGTTCACCTCAATGGGGAGTTGGCAC...ATGGAGCTTATGGGCCTCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
3UTR-3UTR TCA 90 bp GGACACCTGTCCCACCCCTCTGCTTTTGCTCCGGTCAACGCCTACATCCAAAGACTAGGCTCTCAGCCATaGAGAATGTCATCTGTAGTC +
Preference number: 2 (lower is better)
Translates to: GHLSHPSAFAPVNAYIQRLGSQP*RMSSVV
Trigger: GACTACAGATGACATTCTTCATGGCTGAGAGCCTAG...TCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
3UTR-3UTR CCA 90 bp TCAGCCACTGCAGGACACACAGAACAGCTTATACAACCTTTCCCCACCTCCAATAGCTCCATCTCTTGGTaGCTCTGTGCCAACTCCCCA +
Preference number: 2 (lower is better)
Translates to: SATAGHTEQLIQPFPTSNSSISW*LCANSP
Trigger: TGGGGAGTTGGCACAGAGCCACCAAGAGATGGAGCT...ATTGGAGGTGGGGAAAGGTTGTATAAGCTGTTCTGTGTGTCCTGCAGTGGCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR-3UTR TCA 90 bp AACCTTTTGCGATTACCCAGGGCCTGCCCTCTGCTCATGTGTTTCAAGCTGAAACACACAGTGTTACTGTaGGCTCTCCGTGCACAGAGA +
Preference number: 2 (lower is better)
Translates to: NLLRLPRACPLLMCFKLKHTVLL*ALRAQR
Trigger: TCTCTGTGCACGGAGAGCTCACAGTAACACTGTGTG...TTTCAGCTTGAAACACATGAGCAGAGGGCAGGCCCTGGGTAATCGCAAAAGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
3UTR-3UTR GCA 90 bp CACTATGGTCCAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTGCGATTACCCAGGGCCTaGCCTCTGCTCATGTGTTTC +
Preference number: 2 (lower is better)
Translates to: HYGPNIRCWHFDLSQDFVRLPRA*PLLMCF
Trigger: GAAACACATGAGCAGAGGGCAGGCCCTGGGTAATCG...CACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTGGACCATAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
3UTR-3UTR CCA 90 bp GAAAGTGAGGGACCAAGTAGAAAACCAGGAGCAGCGATCAGACAGCAAGGCTGGGTAGATGAAAGCTGTTaGGGGATCAAGAGGAGAGTC +
Preference number: 2 (lower is better)
Translates to: ESEGPSRKPGAAIRQQGWVDESC*GIKRRV
Trigger: GACTCTCCTCTTGATCCCCCAACAGCTTTCATCTAC...CCAGCCTTGCTGTCTGATCGCTGCTCCTGGTTTTCTACTTGGTCCCTCACTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR-3UTR CCA 90 bp TCTAGGAAAGTGAGGGACCAAGTAGAAAACCAGGAGCAGCGATCAGACAGCAAGGAACTAGAACAGTCATaGCCTGGGAGGGAACTGGCT +
Preference number: 2 (lower is better)
Translates to: SRKVRDQVENQEQRSDSKELEQS*PGRELA
Trigger: AGCCAGTTCCCTCCCAGGCCATGACTGTTCTAGTTC...CTTGCTGTCTGATCGCTGCTCCTGGTTTTCTACTTGGTCCCTCACTTTCCTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR-3UTR TCA 90 bp GCAGGACACACAGAACAGCTTATACAACCTTTCCCCACCTCCAATCACAGGCTTCTAGGCTCTCAGCCATaGAGAATGTCATCTGTAGTC +
Preference number: 2 (lower is better)
Translates to: AGHTEQLIQPFPTSNHRLLGSQP*RMSSVV
Trigger: GACTACAGATGACATTCTTCATGGCTGAGAGCCTAG...AAGCCTGTGATTGGAGGTGGGGAAAGGTTGTATAAGCTGTTCTGTGTGTCCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR-3UTR GCA 90 bp GAACCTTTTGCGATTACCCAGGGCCTGCCCTCTGCTCATGTGTTTCAAGCTGAAGTTTTCTGTAGATCATaGAAAAGGACGAGGGTGAAG +
Preference number: 2 (lower is better)
Translates to: EPFAITQGLPSAHVFQAEVFCRS*KRTRVK
Trigger: CTTCACCCTCGTCCTTTTGCATGATCTACAGAAAAC...TTCAGCTTGAAACACATGAGCAGAGGGCAGGCCCTGGGTAATCGCAAAAGGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
3UTR-3UTR GCA 90 bp CTGACCATCCTTAAAGTGTGTAGTGAGACCAGCCCAAAGACACAATTGTTTTCTAGGACGAGGGTGAAGTaGAGTTACGTGGTGACACAC +
Preference number: 2 (lower is better)
Translates to: LTILKVCSETSPKTQLFSRTRVK*SYVVTH
Trigger: GTGTGTCACCACGTAACTGCACTTCACCCTCGTCCT...AGAAAACAATTGTGTCTTTGGGCTGGTCTCACTACACACTTTAAGGATGGTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
3UTR-3UTR GCA 90 bp TCTAGGAAAGTGAGGGACCAAGTAGAAAACCAGGAGCAGCGATCAGACAGCAAGCTCTGCAGGATCAGCTaGAGTTGGCATATAAAAGTA +
Preference number: 2 (lower is better)
Translates to: SRKVRDQVENQEQRSDSKLCRIS*SWHIKV
Trigger: TACTTTTATATGCCAACTGCAGCTGATCCTGCAGAG...CTTGCTGTCTGATCGCTGCTCCTGGTTTTCTACTTGGTCCCTCACTTTCCTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR-3UTR TCA 90 bp TCAGAGGCATACAATGCTGAAGGGCAAAGTGGATTTGGAACCAAAAGAAAGAATACATGCATACTTCTATaGAGCTGCCCCAGAGGGTCC +
Preference number: 2 (lower is better)
Translates to: SEAYNAEGQSGFGTKRKNTCILL*SCPRGS
Trigger: GGACCCTCTGGGGCAGCTTCATAGAAGTATGCATGT...ATTCTTTCTTTTGGTTCCAAATCCACTTTGCCCTTCAGCATTGTATGCCTCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR-3UTR GCA 90 bp TCTAGGAAAGTGAGGGACCAAGTAGAAAACCAGGAGCAGCGATCAGACAGCAAGTCATTGTCTTTGTTCTaGATTTACCACCTCACCTTC +
Preference number: 2 (lower is better)
Translates to: SRKVRDQVENQEQRSDSKSLSLF*IYHLTF
Trigger: GAAGGTGAGGTGGTAAATGCAGAACAAAGACAATGA...CTTGCTGTCTGATCGCTGCTCCTGGTTTTCTACTTGGTCCCTCACTTTCCTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR-3UTR CCA 90 bp CAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTGGCTCACAAACAGTCTGTCCCCTTTGTaGCTGTATAACTGCATATTC +
Preference number: 2 (lower is better)
Translates to: QTSAVGTLISAKTLWLTNSLSPL*LYNCIF
Trigger: GAATATGCAGTTATACAGCCACAAAGGGGACAGACT...GTTTGTGAGCCACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
3UTR CAA 90 bp TCAAATTACATTGTCACTATGGTCCAAACATCCGCTGTTGGCACTTaGATCTCAGCCAAGACTTTGTGGCTCACAAACCTAAGGCACTTG +
Preference number: 2 (lower is better)
Translates to: SNYIVTMVQTSAVGT*ISAKTLWLTNLRHL
Trigger: CAAGTGCCTTAGGTTTGTGAGCCACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTGGACCATAGTGACAATGTAATTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
3UTR-3UTR CCA 90 bp TCAGAGGCATACAATGCTGAAGGGCAAAGTGGATTTGGAACCAAAAGAAAGAATATGATGGTGGAAAGGTaGCATTCAAAGGAATTCAAA +
Preference number: 2 (lower is better)
Translates to: SEAYNAEGQSGFGTKRKNMMVER*HSKEFK
Trigger: TTTGAATTCCTTTGAATGCCACCTTTCCACCATCAT...ATTCTTTCTTTTGGTTCCAAATCCACTTTGCCCTTCAGCATTGTATGCCTCTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR-3UTR CAA 90 bp GCGCTGACAACACAGGGAAACGCGGGGACACGACTGGACACCTGTCCCACCCCTCATAAGCTCCATCTCTaGGTGGCTCTGTGCCAACTC +
Preference number: 3 (lower is better)
Translates to: ALTTQGNAGTRLDTCPTPHKLHL*VALCQL
Trigger: GAGTTGGCACAGAGCCACCAAGAGATGGAGCTTATG...AGGGGTGGGACAGGTGTCCAGTCGTGTCCCCGCGTTTCCCTGTGTTGTCAGCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
3UTR GCA 72 bp GGACACGACTGGACACCTGTCCCACCCCTCTGCTTTTaGTCCGGTCAACGCCTACATCCAAAGAGGCCCATA +
Preference number: 3 (lower is better)
Translates to: GHDWTPVPPLCF*SGQRLHPKRPI
Trigger: TATGGGCCTCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCCAGTCGTGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
3UTR GCA 72 bp AAAGAGGCCCATAAGCTCCATCTCTTGGTGGCTCTGTaGCAACTCCCCATTGAGGTGAACATTGGGGCTCCA +
Preference number: 3 (lower is better)
Translates to: KEAHKLHLLVAL*QLPIEVNIGAP
Trigger: TGGAGCCCCAATGTTCACCTCAATGGGGAGTTGGCACAGAGCCACCAAGAGATGGAGCTTATGGGCCTCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
3UTR CCA 72 bp AGCGATCAGACAGCAAGGCTGGAACTAGAACAGTCATaGCCTGGGAGGGAACTGGCTTGTATGAGACACAAC +
Preference number: 3 (lower is better)
Translates to: SDQTARLELEQS*PGRELACMRHN
Trigger: GTTGTGTCTCATACAAGCCAGTTCCCTCCCAGGCCATGACTGTTCTAGTTCCAGCCTTGCTGTCTGATCGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR-3UTR CAA 90 bp CAAAAGGTAGAAAAGTTGCAGTGGAAAGCAAGCGCTGACAACACAGGGAAACGCCATAAGCTCCATCTCTaGGTGGCTCTGTGCCAACTC +
Preference number: 3 (lower is better)
Translates to: QKVEKLQWKASADNTGKRHKLHL*VALCQL
Trigger: GAGTTGGCACAGAGCCACCAAGAGATGGAGCTTATG...GCGTTTCCCTGTGTTGTCAGCGCTTGCTTTCCACTGCAACTTTTCTACCTTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
3UTR CCA 72 bp AATGTGTGTCTTGGAATGAGGGTAGATGAAAGCTGTTaGGGGATCAAGAGGAGAGTCCTGATTCACAGGCCC +
Preference number: 3 (lower is better)
Translates to: NVCLGMRVDESC*GIKRRVLIHRP
Trigger: GGGCCTGTGAATCAGGACTCTCCTCTTGATCCCCCAACAGCTTTCATCTACCCTCATTCCAAGACACACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR CCA 72 bp TCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTaGCTCACAAACCTAAGGCACTTGAATTCTTCCCTC +
Preference number: 3 (lower is better)
Translates to: SAVGTLISAKTL*LTNLRHLNSSL
Trigger: GAGGGAAGAATTCAAGTGCCTTAGGTTTGTGAGCCACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
3UTR-3UTR CAA 90 bp TCAGCCACTGCAGGACACACAGAACAGCTTATACAACCTTTCCCCACCTCCAATAACAGCTCATTGTCTTaGTTCTGCATTTACCACCTC +
Preference number: 3 (lower is better)
Translates to: SATAGHTEQLIQPFPTSNNSSLS*FCIYHL
Trigger: GAGGTGGTAAATGCAGAACAAAGACAATGAGCTGTT...ATTGGAGGTGGGGAAAGGTTGTATAAGCTGTTCTGTGTGTCCTGCAGTGGCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR GCA 72 bp GTTTTCTGTAGATCATGCAAAAGGACGAGGGTGAAGTaGAGTTACGTGGTGACACACAGTGTTACTGTGAGC +
Preference number: 3 (lower is better)
Translates to: VFCRSCKRTRVK*SYVVTHSVTVS
Trigger: GCTCACAGTAACACTGTGTGTCACCACGTAACTGCACTTCACCCTCGTCCTTTTGCATGATCTACAGAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
3UTR GCA 72 bp GACCAGCCCAAAGACACAATTGTTTTCTGTAGATCATaGAAAAGGACGAGGGTGAAGTGCAGTTACGTGGTG +
Preference number: 3 (lower is better)
Translates to: DQPKDTIVFCRS*KRTRVKCSYVV
Trigger: CACCACGTAACTGCACTTCACCCTCGTCCTTTTGCATGATCTACAGAAAACAATTGTGTCTTTGGGCTGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
3UTR-3UTR CAA 90 bp ATGAGGGTAGATGAAAGCTGTTGGGGGATCAAGAGGAGAGTCCTGATTCACAGGCAGGATCAGCTGCAGTaGGCATATAAAAGTACAAAA +
Preference number: 3 (lower is better)
Translates to: MRVDESCWGIKRRVLIHRQDQLQ*AYKSTK
Trigger: TTTTGTACTTTTATATGCCAACTGCAGCTGATCCTG...CCTGTGAATCAGGACTCTCCTCTTGATCCCCCAACAGCTTTCATCTACCCTCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR TCA 72 bp GAAAGGTGGCATTCAAAGGAATTCAAAGCAGAAATGTaGCTAGGTGACAGAAGTGGAGAATGGTTGGCAGGG +
Preference number: 3 (lower is better)
Translates to: ERWHSKEFKAEM*LGDRSGEWLAG
Trigger: CCCTGCCAACCATTCTCCACTTCTGTCACCTAGTCACATTTCTGCTTTGAATTCCTTTGAATGCCACCTTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR GCA 72 bp GTCTTTGTTCTGCATTTACCACCTCACCTTCACCTCTaGAGGATCAGCTGCAGTTGGCATATAAAAGTACAA +
Preference number: 3 (lower is better)
Translates to: VFVLHLPPHLHL*RISCSWHIKVQ
Trigger: TTGTACTTTTATATGCCAACTGCAGCTGATCCTGCAGAGGTGAAGGTGAGGTGGTAAATGCAGAACAAAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR CCA 72 bp AAATTACATTGTCACTATGGTCCAAACATCCGCTGTTaGCACTTTGATCTCAGCCAAGACTTTGTGGCTCAC +
Preference number: 3 (lower is better)
Translates to: KLHCHYGPNIRC*HFDLSQDFVAH
Trigger: GTGAGCCACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTGGACCATAGTGACAATGTAATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
3UTR CCA 72 bp AGTGAAGCAAACACAAATCGGTGGACTCACAAAGGTTaGCATGATGGTGGAAAGGTGGCATTCAAAGGAATT +
Preference number: 3 (lower is better)
Translates to: SEANTNRWTHKG*HDGGKVAFKGI
Trigger: AATTCCTTTGAATGCCACCTTTCCACCATCATGCCAACCTTTGTGAGTCCACCGATTTGTGTTTGCTTCACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR TCA 72 bp GCATTCAAAGGAATTCAAAGCAGAAATGTGACTAGGTaGCAGAAGTGGAGAATGGTTGGCAGGGATCATCTA +
Preference number: 3 (lower is better)
Translates to: AFKGIQSRNVTR*QKWRMVGRDHL
Trigger: TAGATGATCCCTGCCAACCATTCTCCACTTCTGTCACCTAGTCACATTTCTGCTTTGAATTCCTTTGAATGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR TCA 72 bp ATACAACCTTTCCCCACCTCCAATCACAGGCTTTCATaGACTAACAGCTCATTGTCTTTGTTCTGCATTTAC +
Preference number: 3 (lower is better)
Translates to: IQPFPTSNHRLS*TNSSLSLFCIY
Trigger: GTAAATGCAGAACAAAGACAATGAGCTGTTAGTTCATGAAAGCCTGTGATTGGAGGTGGGGAAAGGTTGTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR-3UTR CAA 90 bp TATAGTAAGGTACAATCAAATTACATTGTCACTATGGTCCAAACATCCGCTGTTTCCCAGAGTCCACATTaGGCTATAGTTCCCCAAAGT +
Preference number: 3 (lower is better)
Translates to: YSKVQSNYIVTMVQTSAVSQSPH*AIVPQS
Trigger: ACTTTGGGGAACTATAGCCAAATGTGGACTCTGGGA...AACAGCGGATGTTTGGACCATAGTGACAATGTAATTTGATTGTACCTTACTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
3UTR TCA 72 bp AAAGTGAACTGTGAACATCTCAGAGGCATACAATGCTaGAGGGCAAAGTGGATTTGGAACCAAAAGAAAGAA +
Preference number: 3 (lower is better)
Translates to: KVNCEHLRGIQC*RAKWIWNQKKE
Trigger: TTCTTTCTTTTGGTTCCAAATCCACTTTGCCCTTCAGCATTGTATGCCTCTGAGATGTTCACAGTTCACTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR GCA 90 bp GACAACACAGGGAAACGCGGGGACACGACTGGACACCTGTCCCACCCCTCTGCTGTCGCTGTGGAGAGCTaGACTCCGGGAGAGCTGGCT +
Preference number: 4 (lower is better)
Translates to: DNTGKRGDTTGHLSHPSAVAVES*TPGELA
Trigger: AGCCAGCTCTCCCGGAGTGCAGCTCTCCACAGCGAC...AGCAGAGGGGTGGGACAGGTGTCCAGTCGTGTCCCCGCGTTTCCCTGTGTTGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp GCGCTGACAACACAGGGAAACGCGGGGACACGACTGGACACCTGTCCCACCCCTTCTGCATGGTCGCTGTaGAGAGCTGCACTCCGGGAG +
Preference number: 4 (lower is better)
Translates to: ALTTQGNAGTRLDTCPTPSAWSL*RAALRE
Trigger: CTCCCGGAGTGCAGCTCTCCACAGCGACCATGCAGA...AGGGGTGGGACAGGTGTCCAGTCGTGTCCCCGCGTTTCCCTGTGTTGTCAGCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp GACAACACAGGGAAACGCGGGGACACGACTGGACACCTGTCCCACCCCTCTGCTGAACTTTGGCGGTGGTaGTCAGAGGTGTGTAGGCGG +
Preference number: 4 (lower is better)
Translates to: DNTGKRGDTTGHLSHPSAELWRW*SEVCRR
Trigger: CCGCCTACACACCTCTGACCACCACCGCCAAAGTTC...AGCAGAGGGGTGGGACAGGTGTCCAGTCGTGTCCCCGCGTTTCCCTGTGTTGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
CDS-3UTR CCA 90 bp GACAACACAGGGAAACGCGGGGACACGACTGGACACCTGTCCCACCCCTCTGCTCGTGTCACCCAAATGTaGTCCAGCAGCGCAGACGTT +
Preference number: 4 (lower is better)
Translates to: DNTGKRGDTTGHLSHPSARVTQM*SSSADV
Trigger: AACGTCTGCGCTGCTGGACCACATTTGGGTGACACG...AGCAGAGGGGTGGGACAGGTGTCCAGTCGTGTCCCCGCGTTTCCCTGTGTTGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp GCGCTGACAACACAGGGAAACGCGGGGACACGACTGGACACCTGTCCCACCCCTGGGTCATTCAGGAGTTaGTCCTGGCTCAGTAGAGTC +
Preference number: 4 (lower is better)
Translates to: ALTTQGNAGTRLDTCPTPGSFRS*SWLSRV
Trigger: GACTCTACTGAGCCAGGACCAACTCCTGAATGACCC...AGGGGTGGGACAGGTGTCCAGTCGTGTCCCCGCGTTTCCCTGTGTTGTCAGCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
3UTR CAA 72 bp GGGACACGACTGGACACCTGTCCCACCCCTCTGCTTTaGCTCCGGTCAACGCCTACATCCAAAGAGGCCCAT +
Preference number: 4 (lower is better)
Translates to: GTRLDTCPTPLL*LRSTPTSKEAH
Trigger: ATGGGCCTCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCCAGTCGTGTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
CDS-3UTR GCA 90 bp GACACGACTGGACACCTGTCCCACCCCTCTGCTTTTGCTCCGGTCAACGCCTACACCTCGTCGAAACTCTaGCATCCCCGGTGCATCAGT +
Preference number: 4 (lower is better)
Translates to: DTTGHLSHPSAFAPVNAYTSSKL*HPRCIS
Trigger: ACTGATGCACCGGGGATGGCAGAGTTTCGACGAGGT...GTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCCAGTCGTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp TTGGGGGATCAAGAGGAGAGTCCTGATTCACAGGCCCAGGCTTCTGGAAGTGGAGAGGTGGTCCTGGGGTaGGAGAGCTGCATCGTGGTG +
Preference number: 4 (lower is better)
Translates to: LGDQEESPDSQAQASGSGEVVLG*ESCIVV
Trigger: CACCACGATGCAGCTCTCCCACCCCAGGACCACCTC...TCCACTTCCAGAAGCCTGGGCCTGTGAATCAGGACTCTCCTCTTGATCCCCCAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp GGGCAGCGTCTGAGAACTGAACCTTTTGCGATTACCCAGGGCCTGCCCTCTGCTGCTCCGTTTGCCATCTaGTGTCACGGGAGACTGAGG +
Preference number: 4 (lower is better)
Translates to: GQRLRTEPFAITQGLPSAAPFAI*CHGRLR
Trigger: CCTCAGTCTCCCGTGACACCAGATGGCAAACGGAGC...AGCAGAGGGCAGGCCCTGGGTAATCGCAAAAGGTTCAGTTCTCAGACGCTGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp GACACGACTGGACACCTGTCCCACCCCTCTGCTTTTGCTCCGGTCAACGCCTACAACTTGGTGGTCAGATaGCGCCTGAGGAGCGTCTTC +
Preference number: 4 (lower is better)
Translates to: DTTGHLSHPSAFAPVNAYNLVVR*RLRSVF
Trigger: GAAGACGCTCCTCAGGCGCCATCTGACCACCAAGTT...GTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCCAGTCGTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
CDS-3UTR CCA 90 bp CAACACAGGGAAACGCGGGGACACGACTGGACACCTGTCCCACCCCTCTGCTTTAGGCGGTGGATGTCTTaGGAGAGGAGCCCTATCTGT +
Preference number: 4 (lower is better)
Translates to: QHRETRGHDWTPVPPLCFRRWMS*ERSPIC
Trigger: ACAGATAGGGCTCCTCTCCCAAGACATCCACCGCCT...AAAGCAGAGGGGTGGGACAGGTGTCCAGTCGTGTCCCCGCGTTTCCCTGTGTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR TCA 90 bp GACACGACTGGACACCTGTCCCACCCCTCTGCTTTTGCTCCGGTCAACGCCTACTCTCTTCTGCAGCATTaGGCTTCACCTGGTGGCCTT +
Preference number: 4 (lower is better)
Translates to: DTTGHLSHPSAFAPVNAYSLLQH*ASPGGL
Trigger: AAGGCCACCAGGTGAAGCTCAATGCTGCAGAAGAGA...GTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCCAGTCGTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR TCA 90 bp TTGGGGGATCAAGAGGAGAGTCCTGATTCACAGGCCCAGGCTTCTGGAAGTGGAGGGAGACTGAGGGCTTaGCTCAGTCCCAGACGAAGC +
Preference number: 4 (lower is better)
Translates to: LGDQEESPDSQAQASGSGGRLRA*LSPRRS
Trigger: GCTTCGTCTGGGACTGAGTCAAGCCCTCAGTCTCCC...TCCACTTCCAGAAGCCTGGGCCTGTGAATCAGGACTCTCCTCTTGATCCCCCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR TCA 90 bp GACACGACTGGACACCTGTCCCACCCCTCTGCTTTTGCTCCGGTCAACGCCTACGCAAAGATCACATACTaGCCCAGGCCGAAATCCTCC +
Preference number: 4 (lower is better)
Translates to: DTTGHLSHPSAFAPVNAYAKITY*PRPKSS
Trigger: GGAGGATTTCGGCCTGGGTCAGTATGTGATCTTTGC...GTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCCAGTCGTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR GCA 90 bp GGACACCTGTCCCACCCCTCTGCTTTTGCTCCGGTCAACGCCTACATCCAAAGACCCTCGAAGGTTGGGTaGATACTCTGCCAGGTCCAC +
Preference number: 4 (lower is better)
Translates to: GHLSHPSAFAPVNAYIQRPSKVG*ILCQVH
Trigger: GTGGACCTGGCAGAGTATGCACCCAACCTTCGAGGG...TCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp TTGGGGGATCAAGAGGAGAGTCCTGATTCACAGGCCCAGGCTTCTGGAAGTGGAGGGCTACCTCAGCCTTaGTGGCCTTCAGCTCCCACT +
Preference number: 4 (lower is better)
Translates to: LGDQEESPDSQAQASGSGGLPQP*WPSAPT
Trigger: AGTGGGAGCTGAAGGCCACCAAGGCTGAGGTAGCCC...TCCACTTCCAGAAGCCTGGGCCTGTGAATCAGGACTCTCCTCTTGATCCCCCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp GGACACCTGTCCCACCCCTCTGCTTTTGCTCCGGTCAACGCCTACATCCAAAGAGCTCCGTTTGCCATCTaGTGTCACGGGAGACTGAGG +
Preference number: 4 (lower is better)
Translates to: GHLSHPSAFAPVNAYIQRAPFAI*CHGRLR
Trigger: CCTCAGTCTCCCGTGACACCAGATGGCAAACGGAGC...TCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp GGACACCTGTCCCACCCCTCTGCTTTTGCTCCGGTCAACGCCTACATCCAAAGAATAATGAGGCCGCCATaGACGCCACTCCCTCGAAGG +
Preference number: 4 (lower is better)
Translates to: GHLSHPSAFAPVNAYIQRIMRPP*TPLPRR
Trigger: CCTTCGAGGGAGTGGCGTCCATGGCGGCCTCATTAT...TCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR TCA 90 bp CAACACAGGGAAACGCGGGGACACGACTGGACACCTGTCCCACCCCTCTGCTTTTCCTTTTCCATGTCCTaGGGGGTAGCTGTCAGTAGT +
Preference number: 4 (lower is better)
Translates to: QHRETRGHDWTPVPPLCFSFSMS*GVAVSS
Trigger: ACTACTGACAGCTACCCCTCAGGACATGGAAAAGGA...AAAGCAGAGGGGTGGGACAGGTGTCCAGTCGTGTCCCCGCGTTTCCCTGTGTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR TCA 90 bp GCGCTGACAACACAGGGAAACGCGGGGACACGACTGGACACCTGTCCCACCCCTCATTTGATGCTGAGATaGTGTAGTTGGCTGGTGACT +
Preference number: 4 (lower is better)
Translates to: ALTTQGNAGTRLDTCPTPHLMLR*CSWLVT
Trigger: AGTCACCAGCCAACTACATCATCTCAGCATCAAATG...AGGGGTGGGACAGGTGTCCAGTCGTGTCCCCGCGTTTCCCTGTGTTGTCAGCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR TCA 90 bp GGACACCTGTCCCACCCCTCTGCTTTTGCTCCGGTCAACGCCTACATCCAAAGAGACCAATCAGGGCGTTaGACTTGGTGGTCAGATGGC +
Preference number: 4 (lower is better)
Translates to: GHLSHPSAFAPVNAYIQRDQSGR*TWWSDG
Trigger: GCCATCTGACCACCAAGTTCAACGCCCTGATTGGTC...TCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
CDS-3UTR GCA 90 bp GCAGGACACACAGAACAGCTTATACAACCTTTCCCCACCTCCAATCACAGGCTTCCTTGGTCCCGCAGTTaGTCGGAGCCCACCTCGTCG +
Preference number: 4 (lower is better)
Translates to: AGHTEQLIQPFPTSNHRLPWSRS*SEPTSS
Trigger: CGACGAGGTGGGCTCCGAGCAACTGCGGGACCAAGG...AAGCCTGTGATTGGAGGTGGGGAAAGGTTGTATAAGCTGTTCTGTGTGTCCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR GCA 90 bp TTGGGGGATCAAGAGGAGAGTCCTGATTCACAGGCCCAGGCTTCTGGAAGTGGAGTTGGGTGCATACTCTaGCAGGTCCACGGATCGCAG +
Preference number: 4 (lower is better)
Translates to: LGDQEESPDSQAQASGSGVGCIL*QVHGSQ
Trigger: CTGCGATCCGTGGACCTGGCAGAGTATGCACCCAAC...TCCACTTCCAGAAGCCTGGGCCTGTGAATCAGGACTCTCCTCTTGATCCCCCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp GAAAGTGAGGGACCAAGTAGAAAACCAGGAGCAGCGATCAGACAGCAAGGCTGGCAAAGGAGGTGGTCCTaGGGTGGGAGAGCTGCATCG +
Preference number: 4 (lower is better)
Translates to: ESEGPSRKPGAAIRQQGWQRRWS*GGRAAS
Trigger: CGATGCAGCTCTCCCACCCCAGGACCACCTCCTTTG...CCAGCCTTGCTGTCTGATCGCTGCTCCTGGTTTTCTACTTGGTCCCTCACTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp CCTCTGCTTTTGCTCCGGTCAACGCCTACATCCAAAGAGGCCCATAAGCTCCATCTTGGGCTCTCCCACTaGGGACAGCTGGTTCCCATC +
Preference number: 4 (lower is better)
Translates to: PLLLLRSTPTSKEAHKLHLGLSH*GQLVPI
Trigger: GATGGGAACCAGCTGTCCCCAGTGGGAGAGCCCAAG...ATGGAGCTTATGGGCCTCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp CAACACAGGGAAACGCGGGGACACGACTGGACACCTGTCCCACCCCTCTGCTTTGCTTCCCAGGTAATGTaGGGTATTTCTGCTCCGCTA +
Preference number: 4 (lower is better)
Translates to: QHRETRGHDWTPVPPLCFASQVM*GISAPL
Trigger: TAGCGGAGCAGAAATACCCCACATTACCTGGGAAGC...AAAGCAGAGGGGTGGGACAGGTGTCCAGTCGTGTCCCCGCGTTTCCCTGTGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp CACGACTGGACACCTGTCCCACCCCTCTGCTTTTGCTCCGGTCAACGCCTACATCCATTACCCTGTGGTTaGACCACTGCACAACTTCGG +
Preference number: 4 (lower is better)
Translates to: HDWTPVPPLCFCSGQRLHPLPCG*TTAQLR
Trigger: CCGAAGTTGTGCAGTGGTCCAACCACAGGGTAATGG...ATGTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCCAGTCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp GACACGACTGGACACCTGTCCCACCCCTCTGCTTTTGCTCCGGTCAACGCCTACGAGGAGCGTCTTCTGTaGGGGGATGTTAAGAAGCAT +
Preference number: 4 (lower is better)
Translates to: DTTGHLSHPSAFAPVNAYEERLL*GDVKKH
Trigger: ATGCTTCTTAACATCCCCCCACAGAAGACGCTCCTC...GTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCCAGTCGTGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
CDS-3UTR TCA 90 bp GAAAGTGAGGGACCAAGTAGAAAACCAGGAGCAGCGATCAGACAGCAAGGCTGGCCTTGGGCTTCCACTTaGTCTGTGAGGACGCTCACC +
Preference number: 4 (lower is better)
Translates to: ESEGPSRKPGAAIRQQGWPWAST*SVRTLT
Trigger: GGTGAGCGTCCTCACAGATCAAGTGGAAGCCCAAGG...CCAGCCTTGCTGTCTGATCGCTGCTCCTGGTTTTCTACTTGGTCCCTCACTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR TCA 90 bp GGACACCTGTCCCACCCCTCTGCTTTTGCTCCGGTCAACGCCTACATCCAAAGAAGACGGTGGATTTCTTaGTCTCGCTCTGCATGGTCG +
Preference number: 4 (lower is better)
Translates to: GHLSHPSAFAPVNAYIQRRRWIS*SRSAWS
Trigger: CGACCATGCAGAGCGAGATCAAGAAATCCACCGTCT...TCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR TCA 90 bp TCTAGGAAAGTGAGGGACCAAGTAGAAAACCAGGAGCAGCGATCAGACAGCAAGTGGCTGGCTGCTCCCTaGAGAGTCAGGCTGGAGGGA +
Preference number: 4 (lower is better)
Translates to: SRKVRDQVENQEQRSDSKWLAAP*RVRLEG
Trigger: TCCCTCCAGCCTGACTCTTCAGGGAGCAGCCAGCCA...CTTGCTGTCTGATCGCTGCTCCTGGTTTTCTACTTGGTCCCTCACTTTCCTAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR GCA 90 bp ATGGTCCAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTGGCTCGTCGCTGTGGAGAGCTaGACTCCGGGAGAGCTGGCT +
Preference number: 4 (lower is better)
Translates to: MVQTSAVGTLISAKTLWLVAVES*TPGELA
Trigger: AGCCAGCTCTCCCGGAGTGCAGCTCTCCACAGCGAC...GAGCCACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTGGACCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR GCA 90 bp CAACACAGGGAAACGCGGGGACACGACTGGACACCTGTCCCACCCCTCTGCTTTGTTTCTTCTGAGCCCTaGTCTCCAGTGATTTCTGTG +
Preference number: 4 (lower is better)
Translates to: QHRETRGHDWTPVPPLCFVSSEP*SPVISV
Trigger: CACAGAAATCACTGGAGAGCAGGGCTCAGAAGAAAC...AAAGCAGAGGGGTGGGACAGGTGTCCAGTCGTGTCCCCGCGTTTCCCTGTGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR GCA 90 bp ACATTGGGGCTCCACGTGTGCCTCTCTAGGCTCTCAGCCATGAAGAATGTCATCCTTTGGGGCTCCGTTTaGCATCTGGTGTCACGGGAG +
Preference number: 4 (lower is better)
Translates to: TLGLHVCLSRLSAMKNVILWGSV*HLVSRE
Trigger: CTCCCGTGACACCAGATGGCAAACGGAGCCCCAAAG...GATGACATTCTTCATGGCTGAGAGCCTAGAGAGGCACACGTGGAGCCCCAATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR GCA 90 bp CCTCTGCTTTTGCTCCGGTCAACGCCTACATCCAAAGAGGCCCATAAGCTCCATTCAGCAGGCCTCCTGTaGAGGCAGTTGGGGTTGAAC +
Preference number: 4 (lower is better)
Translates to: PLLLLRSTPTSKEAHKLHSAGLL*RQLGLN
Trigger: GTTCAACCCCAACTGCCTGCACAGGAGGCCTGCTGA...ATGGAGCTTATGGGCCTCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp GAACCTTTTGCGATTACCCAGGGCCTGCCCTCTGCTCATGTGTTTCAAGCTGAATCTGCATGGTCGCTGTaGAGAGCTGCACTCCGGGAG +
Preference number: 4 (lower is better)
Translates to: EPFAITQGLPSAHVFQAESAWSL*RAALRE
Trigger: CTCCCGGAGTGCAGCTCTCCACAGCGACCATGCAGA...TTCAGCTTGAAACACATGAGCAGAGGGCAGGCCCTGGGTAATCGCAAAAGGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp GAACCTTTTGCGATTACCCAGGGCCTGCCCTCTGCTCATGTGTTTCAAGCTGAACTGTGGCAAAGGAGGTaGTCCTGGGGTGGGAGAGCT +
Preference number: 4 (lower is better)
Translates to: EPFAITQGLPSAHVFQAELWQRR*SWGGRA
Trigger: AGCTCTCCCACCCCAGGACCACCTCCTTTGCCACAG...TTCAGCTTGAAACACATGAGCAGAGGGCAGGCCCTGGGTAATCGCAAAAGGTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp TCACTCAGCCACTGCAGGACACACAGAACAGCTTATACAACCTTTCCCCACCTCCTGTGGCAAAGGAGGTaGTCCTGGGGTGGGAGAGCT +
Preference number: 4 (lower is better)
Translates to: SLSHCRTHRTAYTTFPHLLWQRR*SWGGRA
Trigger: AGCTCTCCCACCCCAGGACCACCTCCTTTGCCACAG...GAGGTGGGGAAAGGTTGTATAAGCTGTTCTGTGTGTCCTGCAGTGGCTGAGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp GGGCTCCACGTGTGCCTCTCTAGGCTCTCAGCCATGAAGAATGTCATCTGTAGTGCTGGAGGGAGGCAGTaGGAGGAGATTTGGCAGCTT +
Preference number: 4 (lower is better)
Translates to: GLHVCLSRLSAMKNVICSAGGRQ*EEIWQL
Trigger: AAGCTGCCAAATCTCCTCCCACTGCCTCCCTCCAGC...ACTACAGATGACATTCTTCATGGCTGAGAGCCTAGAGAGGCACACGTGGAGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp CCTCTGCTTTTGCTCCGGTCAACGCCTACATCCAAAGAGGCCCATAAGCTCCATCGTTCTGTGCTCCACTaGGCAAAGGGGGCATTGGCA +
Preference number: 4 (lower is better)
Translates to: PLLLLRSTPTSKEAHKLHRSVLH*AKGALA
Trigger: TGCCAATGCCCCCTTTGCCCAGTGGAGCACAGAACG...ATGGAGCTTATGGGCCTCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAGAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp CACGACTGGACACCTGTCCCACCCCTCTGCTTTTGCTCCGGTCAACGCCTACATACCAGCTTCTTCCTGTaGAGGGGGTGTTTAATCCCT +
Preference number: 4 (lower is better)
Translates to: HDWTPVPPLCFCSGQRLHTSFFL*RGCLIP
Trigger: AGGGATTAAACACCCCCTCCACAGGAAGAAGCTGGT...ATGTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCCAGTCGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR TCA 90 bp GGGCTCCACGTGTGCCTCTCTAGGCTCTCAGCCATGAAGAATGTCATCTGTAGTGTCTCAGGTCCTCAATaGGATGGAGCACAGGCATGG +
Preference number: 4 (lower is better)
Translates to: GLHVCLSRLSAMKNVICSVSGPQ*DGAQAW
Trigger: CCATGCCTGTGCTCCATCTCATTGAGGACCTGAGAC...ACTACAGATGACATTCTTCATGGCTGAGAGCCTAGAGAGGCACACGTGGAGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR TCA 90 bp CACTACCCCTCCCCCAAATCATTTCACTCAGCCACTGCAGGACACACAGAACAGGGAGAGGGTTCTTTCTaGAGGCCCCTGAGTTGCCAT +
Preference number: 4 (lower is better)
Translates to: HYPSPKSFHSATAGHTEQGEGSF*RPLSCH
Trigger: ATGGCAACTCAGGGGCCTTCAGAAAGAACCCTCTCC...CTGTTCTGTGTGTCCTGCAGTGGCTGAGTGAAATGATTTGGGGGAGGGGTAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR TCA 90 bp TCATGCAAAAGGACGAGGGTGAAGTGCAGTTACGTGGTGACACACAGTGTTACTTGGCTGGCTGCTCCCTaGAGAGTCAGGCTGGAGGGA +
Preference number: 4 (lower is better)
Translates to: SCKRTRVKCSYVVTHSVTWLAAP*RVRLEG
Trigger: TCCCTCCAGCCTGACTCTTCAGGGAGCAGCCAGCCA...AGTAACACTGTGTGTCACCACGTAACTGCACTTCACCCTCGTCCTTTTGCATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp CCTCTGCTTTTGCTCCGGTCAACGCCTACATCCAAAGAGGCCCATAAGCTCCATGACCAATCAGGGCGTTaGACTTGGTGGTCAGATGGC +
Preference number: 4 (lower is better)
Translates to: PLLLLRSTPTSKEAHKLHDQSGR*TWWSDG
Trigger: GCCATCTGACCACCAAGTTCAACGCCCTGATTGGTC...ATGGAGCTTATGGGCCTCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
CDS-3UTR GCA 90 bp GGGCAGCGTCTGAGAACTGAACCTTTTGCGATTACCCAGGGCCTGCCCTCTGCTAGCTGTTTTAGTGCCTaGAATGATCCCGTCCATCTG +
Preference number: 4 (lower is better)
Translates to: GQRLRTEPFAITQGLPSASCFSA*NDPVHL
Trigger: CAGATGGACGGGATCATTGCAGGCACTAAAACAGCT...AGCAGAGGGCAGGCCCTGGGTAATCGCAAAAGGTTCAGTTCTCAGACGCTGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR GCA 90 bp ACATTGGGGCTCCACGTGTGCCTCTCTAGGCTCTCAGCCATGAAGAATGTCATCTACATACGCGTTCTGTaGTCCACTGGGCAAAGGGGG +
Preference number: 4 (lower is better)
Translates to: TLGLHVCLSRLSAMKNVIYIRVL*STGQRG
Trigger: CCCCCTTTGCCCAGTGGAGCACAGAACGCGTATGTA...GATGACATTCTTCATGGCTGAGAGCCTAGAGAGGCACACGTGGAGCCCCAATGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp AAGGACGAGGGTGAAGTGCAGTTACGTGGTGACACACAGTGTTACTGTGAGCTCTGGAGTTCAAGCAGGTaGATGGGGGAGACAGCCCAG +
Preference number: 4 (lower is better)
Translates to: KDEGEVQLRGDTQCYCELWSSSR*MGETAQ
Trigger: CTGGGCTGTCTCCCCCATCCACCTGCTTGAACTCCA...GAGCTCACAGTAACACTGTGTGTCACCACGTAACTGCACTTCACCCTCGTCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp AAAAGGACGAGGGTGAAGTGCAGTTACGTGGTGACACACAGTGTTACTGTGAGCGGGCTACCTCAGCCTTaGTGGCCTTCAGCTCCCACT +
Preference number: 4 (lower is better)
Translates to: KRTRVKCSYVVTHSVTVSGLPQP*WPSAPT
Trigger: AGTGGGAGCTGAAGGCCACCAAGGCTGAGGTAGCCC...GCTCACAGTAACACTGTGTGTCACCACGTAACTGCACTTCACCCTCGTCCTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp CACTACCCCTCCCCCAAATCATTTCACTCAGCCACTGCAGGACACACAGAACAGACCTGTTCTTGCAGCTaGGCTACCTCAGCCTTGGTG +
Preference number: 4 (lower is better)
Translates to: HYPSPKSFHSATAGHTEQTCSCS*ATSALV
Trigger: CACCAAGGCTGAGGTAGCCCAGCTGCAAGAACAGGT...CTGTTCTGTGTGTCCTGCAGTGGCTGAGTGAAATGATTTGGGGGAGGGGTAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp GAAAGTGAGGGACCAAGTAGAAAACCAGGAGCAGCGATCAGACAGCAAGGCTGGCGGGAGAGCTGGCTGTaGAGACGCTCAATTTCTGCA +
Preference number: 4 (lower is better)
Translates to: ESEGPSRKPGAAIRQQGWRESWL*RRSISA
Trigger: TGCAGAAATTGAGCGTCTCCACAGCCAGCTCTCCCG...CCAGCCTTGCTGTCTGATCGCTGCTCCTGGTTTTCTACTTGGTCCCTCACTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp AAAAGGACGAGGGTGAAGTGCAGTTACGTGGTGACACACAGTGTTACTGTGAGCCAAAGGAGGTGGTCCTaGGGTGGGAGAGCTGCATCG +
Preference number: 4 (lower is better)
Translates to: KRTRVKCSYVVTHSVTVSQRRWS*GGRAAS
Trigger: CGATGCAGCTCTCCCACCCCAGGACCACCTCCTTTG...GCTCACAGTAACACTGTGTGTCACCACGTAACTGCACTTCACCCTCGTCCTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp TTGGGGGATCAAGAGGAGAGTCCTGATTCACAGGCCCAGGCTTCTGGAAGTGGAGGGCAAAGGGGGCATTaGCATCACATTTCTGTCCCT +
Preference number: 4 (lower is better)
Translates to: LGDQEESPDSQAQASGSGGQRGH*HHISVP
Trigger: AGGGACAGAAATGTGATGCCAATGCCCCCTTTGCCC...TCCACTTCCAGAAGCCTGGGCCTGTGAATCAGGACTCTCCTCTTGATCCCCCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp GGACACCTGTCCCACCCCTCTGCTTTTGCTCCGGTCAACGCCTACATCCAAAGACACTCCATTACCCTGTaGTTGGACCACTGCACAACT +
Preference number: 4 (lower is better)
Translates to: GHLSHPSAFAPVNAYIQRHSITL*LDHCTT
Trigger: AGTTGTGCAGTGGTCCAACCACAGGGTAATGGAGTG...TCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp CCTCTGCTTTTGCTCCGGTCAACGCCTACATCCAAAGAGGCCCATAAGCTCCATCACTCCCTCGAAGGTTaGGTGCATACTCTGCCAGGT +
Preference number: 4 (lower is better)
Translates to: PLLLLRSTPTSKEAHKLHHSLEG*VHTLPG
Trigger: ACCTGGCAGAGTATGCACCCAACCTTCGAGGGAGTG...ATGGAGCTTATGGGCCTCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp GAACCTTTTGCGATTACCCAGGGCCTGCCCTCTGCTCATGTGTTTCAAGCTGAAATAATGAGGCCGCCATaGACGCCACTCCCTCGAAGG +
Preference number: 4 (lower is better)
Translates to: EPFAITQGLPSAHVFQAEIMRPP*TPLPRR
Trigger: CCTTCGAGGGAGTGGCGTCCATGGCGGCCTCATTAT...TTCAGCTTGAAACACATGAGCAGAGGGCAGGCCCTGGGTAATCGCAAAAGGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp ACATTGGGGCTCCACGTGTGCCTCTCTAGGCTCTCAGCCATGAAGAATGTCATCAACTTGGTGGTCAGATaGCGCCTGAGGAGCGTCTTC +
Preference number: 4 (lower is better)
Translates to: TLGLHVCLSRLSAMKNVINLVVR*RLRSVF
Trigger: GAAGACGCTCCTCAGGCGCCATCTGACCACCAAGTT...GATGACATTCTTCATGGCTGAGAGCCTAGAGAGGCACACGTGGAGCCCCAATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
3UTR CAA 72 bp ACGCCTACATCCAAAGAGGCCCATAAGCTCCATCTCTaGGTGGCTCTGTGCCAACTCCCCATTGAGGTGAAC +
Preference number: 4 (lower is better)
Translates to: TPTSKEAHKLHL*VALCQLPIEVN
Trigger: GTTCACCTCAATGGGGAGTTGGCACAGAGCCACCAAGAGATGGAGCTTATGGGCCTCTTTGGATGTAGGCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
CDS-3UTR TCA 90 bp GAAAGTGAGGGACCAAGTAGAAAACCAGGAGCAGCGATCAGACAGCAAGGCTGGAGGGCTTCTCTTTCCTaGGGAAGTGCCAACATCTCC +
Preference number: 4 (lower is better)
Translates to: ESEGPSRKPGAAIRQQGWRASLS*GSANIS
Trigger: GGAGATGTTGGCACTTCCTCAGGAAAGAGAAGCCCT...CCAGCCTTGCTGTCTGATCGCTGCTCCTGGTTTTCTACTTGGTCCCTCACTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR TCA 90 bp ACATTGGGGCTCCACGTGTGCCTCTCTAGGCTCTCAGCCATGAAGAATGTCATCCAGGAGAGTTTCTTCTaGGCCCTGCTCTCCAGTGAT +
Preference number: 4 (lower is better)
Translates to: TLGLHVCLSRLSAMKNVIQESFF*ALLSSD
Trigger: ATCACTGGAGAGCAGGGCTCAGAAGAAACTCTCCTG...GATGACATTCTTCATGGCTGAGAGCCTAGAGAGGCACACGTGGAGCCCCAATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR TCA 90 bp CAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTGGCTCACAAACGGGAGACTGAGGGCTTaGCTCAGTCCCAGACGAAGC +
Preference number: 4 (lower is better)
Translates to: QTSAVGTLISAKTLWLTNGRLRA*LSPRRS
Trigger: GCTTCGTCTGGGACTGAGTCAAGCCCTCAGTCTCCC...GTTTGTGAGCCACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR GCA 90 bp AGAACTGAACCTTTTGCGATTACCCAGGGCCTGCCCTCTGCTCATGTGTTTCAAATGATCCCGTCCATCTaGTCCAGGGCAGCTTCCAGC +
Preference number: 4 (lower is better)
Translates to: RTEPFAITQGLPSAHVFQMIPSI*SRAASS
Trigger: GCTGGAAGCTGCCCTGGAGCAGATGGACGGGATCAT...TTGAAACACATGAGCAGAGGGCAGGCCCTGGGTAATCGCAAAAGGTTCAGTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR GCA 90 bp ACTGAACCTTTTGCGATTACCCAGGGCCTGCCCTCTGCTCATGTGTTTCAAGCTTCAGCTTTGGCTGGCTaGTCCCTGAAGAGTCAGGCT +
Preference number: 4 (lower is better)
Translates to: TEPFAITQGLPSAHVFQASALAG*SLKSQA
Trigger: AGCCTGACTCTTCAGGGAGCAGCCAGCCAAAGCTGA...AGCTTGAAACACATGAGCAGAGGGCAGGCCCTGGGTAATCGCAAAAGGTTCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR GCA 90 bp AAAAGGACGAGGGTGAAGTGCAGTTACGTGGTGACACACAGTGTTACTGTGAGCCTTTGGGGCTCCGTTTaGCATCTGGTGTCACGGGAG +
Preference number: 4 (lower is better)
Translates to: KRTRVKCSYVVTHSVTVSLWGSV*HLVSRE
Trigger: CTCCCGTGACACCAGATGGCAAACGGAGCCCCAAAG...GCTCACAGTAACACTGTGTGTCACCACGTAACTGCACTTCACCCTCGTCCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR GCA 90 bp AAGGACGAGGGTGAAGTGCAGTTACGTGGTGACACACAGTGTTACTGTGAGCTCACCTCGTCGAAACTCTaGCATCCCCGGTGCATCAGT +
Preference number: 4 (lower is better)
Translates to: KDEGEVQLRGDTQCYCELTSSKL*HPRCIS
Trigger: ACTGATGCACCGGGGATGGCAGAGTTTCGACGAGGT...GAGCTCACAGTAACACTGTGTGTCACCACGTAACTGCACTTCACCCTCGTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR GCA 90 bp AGAACTGAACCTTTTGCGATTACCCAGGGCCTGCCCTCTGCTCATGTGTTTCAATCAGCAGGCCTCCTGTaGAGGCAGTTGGGGTTGAAC +
Preference number: 4 (lower is better)
Translates to: RTEPFAITQGLPSAHVFQSAGLL*RQLGLN
Trigger: GTTCAACCCCAACTGCCTGCACAGGAGGCCTGCTGA...TTGAAACACATGAGCAGAGGGCAGGCCCTGGGTAATCGCAAAAGGTTCAGTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR GCA 90 bp AACCTTTTGCGATTACCCAGGGCCTGCCCTCTGCTCATGTGTTTCAAGCTGAAAGTTGGGTGCATACTCTaGCAGGTCCACGGATCGCAG +
Preference number: 4 (lower is better)
Translates to: NLLRLPRACPLLMCFKLKVGCIL*QVHGSQ
Trigger: CTGCGATCCGTGGACCTGGCAGAGTATGCACCCAAC...TTTCAGCTTGAAACACATGAGCAGAGGGCAGGCCCTGGGTAATCGCAAAAGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp GCAGGACACACAGAACAGCTTATACAACCTTTCCCCACCTCCAATCACAGGCTTTGGAGTTCAAGCAGGTaGATGGGGGAGACAGCCCAG +
Preference number: 4 (lower is better)
Translates to: AGHTEQLIQPFPTSNHRLWSSSR*MGETAQ
Trigger: CTGGGCTGTCTCCCCCATCCACCTGCTTGAACTCCA...AAGCCTGTGATTGGAGGTGGGGAAAGGTTGTATAAGCTGTTCTGTGTGTCCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp GGGCTCCACGTGTGCCTCTCTAGGCTCTCAGCCATGAAGAATGTCATCTGTAGTTGGCAGCTTCTCCATTaGGTGTGGCTCCTGAAAGCT +
Preference number: 4 (lower is better)
Translates to: GLHVCLSRLSAMKNVICSWQLLH*VWLLKA
Trigger: AGCTTTCAGGAGCCACACCCAATGGAGAAGCTGCCA...ACTACAGATGACATTCTTCATGGCTGAGAGCCTAGAGAGGCACACGTGGAGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp GAACCTTTTGCGATTACCCAGGGCCTGCCCTCTGCTCATGTGTTTCAAGCTGAAAACTTGGTGGTCAGATaGCGCCTGAGGAGCGTCTTC +
Preference number: 4 (lower is better)
Translates to: EPFAITQGLPSAHVFQAENLVVR*RLRSVF
Trigger: GAAGACGCTCCTCAGGCGCCATCTGACCACCAAGTT...TTCAGCTTGAAACACATGAGCAGAGGGCAGGCCCTGGGTAATCGCAAAAGGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp GGGCTCCACGTGTGCCTCTCTAGGCTCTCAGCCATGAAGAATGTCATCTGTAGTGGGTCATTCAGGAGTTaGTCCTGGCTCAGTAGAGTC +
Preference number: 4 (lower is better)
Translates to: GLHVCLSRLSAMKNVICSGSFRS*SWLSRV
Trigger: GACTCTACTGAGCCAGGACCAACTCCTGAATGACCC...ACTACAGATGACATTCTTCATGGCTGAGAGCCTAGAGAGGCACACGTGGAGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
CDS-3UTR CCA 90 bp GGGCTCCACGTGTGCCTCTCTAGGCTCTCAGCCATGAAGAATGTCATCTGTAGTTTCAGGAGTTGGTCCTaGCTCAGTAGAGTCTGGTCC +
Preference number: 4 (lower is better)
Translates to: GLHVCLSRLSAMKNVICSFRSWS*LSRVWS
Trigger: GGACCAGACTCTACTGAGCCAGGACCAACTCCTGAA...ACTACAGATGACATTCTTCATGGCTGAGAGCCTAGAGAGGCACACGTGGAGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208159.2
CDS-3UTR TCA 90 bp CACTATGGTCCAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTGCCTTGGGCTTCCACTTaGTCTGTGAGGACGCTCACC +
Preference number: 4 (lower is better)
Translates to: HYGPNIRCWHFDLSQDFVPWAST*SVRTLT
Trigger: GGTGAGCGTCCTCACAGATCAAGTGGAAGCCCAAGG...CACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTGGACCATAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp GAAGTGCAGTTACGTGGTGACACACAGTGTTACTGTGAGCTCTCCGTGCACAGATCTCTTCTGCAGCATTaGGCTTCACCTGGTGGCCTT +
Preference number: 4 (lower is better)
Translates to: EVQLRGDTQCYCELSVHRSLLQH*ASPGGL
Trigger: AAGGCCACCAGGTGAAGCTCAATGCTGCAGAAGAGA...TCTGTGCACGGAGAGCTCACAGTAACACTGTGTGTCACCACGTAACTGCACTTC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp GACACGACTGGACACCTGTCCCACCCCTCTGCTTTTGCTCCGGTCAACGCCTACGATGTAGTTGGCTGGTaGCTTTTAAGAAGAGTAGAT +
Preference number: 4 (lower is better)
Translates to: DTTGHLSHPSAFAPVNAYDVVGW*LLRRVD
Trigger: ATCTACTCTTCTTAAAAGTCACCAGCCAACTACATC...GTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCCAGTCGTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR GCA 90 bp TTTCACTCAGCCACTGCAGGACACACAGAACAGCTTATACAACCTTTCCCCACCTCAGCTTTGGCTGGCTaGTCCCTGAAGAGTCAGGCT +
Preference number: 4 (lower is better)
Translates to: FHSATAGHTEQLIQPFPTSALAG*SLKSQA
Trigger: AGCCTGACTCTTCAGGGAGCAGCCAGCCAAAGCTGA...GGTGGGGAAAGGTTGTATAAGCTGTTCTGTGTGTCCTGCAGTGGCTGAGTGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR GCA 90 bp ATGGTCCAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTGGCTCTACATACGCGTTCTGTaGTCCACTGGGCAAAGGGGG +
Preference number: 4 (lower is better)
Translates to: MVQTSAVGTLISAKTLWLYIRVL*STGQRG
Trigger: CCCCCTTTGCCCAGTGGAGCACAGAACGCGTATGTA...GAGCCACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTGGACCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp ATGAGGGTAGATGAAAGCTGTTGGGGGATCAAGAGGAGAGTCCTGATTCACAGGTATGTAGGTAGCTGTTaGGCCAGGGACCTGGCTCAG +
Preference number: 4 (lower is better)
Translates to: MRVDESCWGIKRRVLIHRYVGSC*ARDLAQ
Trigger: CTGAGCCAGGTCCCTGGCCCAACAGCTACCTACATA...CCTGTGAATCAGGACTCTCCTCTTGATCCCCCAACAGCTTTCATCTACCCTCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp GTCACTATGGTCCAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGGCACTCCGGGAGAGCTaGCTGTGGAGACGCTCAATT +
Preference number: 4 (lower is better)
Translates to: VTMVQTSAVGTLISAKTLALRES*LWRRSI
Trigger: AATTGAGCGTCTCCACAGCCAGCTCTCCCGGAGTGC...CAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTGGACCATAGTGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp CAAAAGGTAGAAAAGTTGCAGTGGAAAGCAAGCGCTGACAACACAGGGAAACGCGCACTCCGGGAGAGCTaGCTGTGGAGACGCTCAATT +
Preference number: 4 (lower is better)
Translates to: QKVEKLQWKASADNTGKRALRES*LWRRSI
Trigger: AATTGAGCGTCTCCACAGCCAGCTCTCCCGGAGTGC...GCGTTTCCCTGTGTTGTCAGCGCTTGCTTTCCACTGCAACTTTTCTACCTTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp CAACACAGGGAAACGCGGGGACACGACTGGACACCTGTCCCACCCCTCTGCTTTCTGGGCTTTTATTTGTaGTATTCCATTTTCGGAAGC +
Preference number: 4 (lower is better)
Translates to: QHRETRGHDWTPVPPLCFLGFYL*YSIFGS
Trigger: GCTTCCGAAAATGGAATACCACAAATAAAAGCCCAG...AAAGCAGAGGGGTGGGACAGGTGTCCAGTCGTGTCCCCGCGTTTCCCTGTGTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp CACGACTGGACACCTGTCCCACCCCTCTGCTTTTGCTCCGGTCAACGCCTACATCTTCGGGACTTCCTCTaGGCTTTTATTTGTGGTATT +
Preference number: 4 (lower is better)
Translates to: HDWTPVPPLCFCSGQRLHLRDFL*AFICGI
Trigger: AATACCACAAATAAAAGCCCAGAGGAAGTCCCGAAG...ATGTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCCAGTCGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp TCATGCAAAAGGACGAGGGTGAAGTGCAGTTACGTGGTGACACACAGTGTTACTGCTGGAGGGAGGCAGTaGGAGGAGATTTGGCAGCTT +
Preference number: 4 (lower is better)
Translates to: SCKRTRVKCSYVVTHSVTAGGRQ*EEIWQL
Trigger: AAGCTGCCAAATCTCCTCCCACTGCCTCCCTCCAGC...AGTAACACTGTGTGTCACCACGTAACTGCACTTCACCCTCGTCCTTTTGCATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp CAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTGGCTCACAAACCGTTCTGTGCTCCACTaGGCAAAGGGGGCATTGGCA +
Preference number: 4 (lower is better)
Translates to: QTSAVGTLISAKTLWLTNRSVLH*AKGALA
Trigger: TGCCAATGCCCCCTTTGCCCAGTGGAGCACAGAACG...GTTTGTGAGCCACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp AACCTTTTGCGATTACCCAGGGCCTGCCCTCTGCTCATGTGTTTCAAGCTGAAACACTCCCTCGAAGGTTaGGTGCATACTCTGCCAGGT +
Preference number: 4 (lower is better)
Translates to: NLLRLPRACPLLMCFKLKHSLEG*VHTLPG
Trigger: ACCTGGCAGAGTATGCACCCAACCTTCGAGGGAGTG...TTTCAGCTTGAAACACATGAGCAGAGGGCAGGCCCTGGGTAATCGCAAAAGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp CAAAAGGTAGAAAAGTTGCAGTGGAAAGCAAGCGCTGACAACACAGGGAAACGCAGAGTCGTGAGGCGGTaGATGTCTTGGGAGAGGAGC +
Preference number: 4 (lower is better)
Translates to: QKVEKLQWKASADNTGKRRVVRR*MSWERS
Trigger: GCTCCTCTCCCAAGACATCCACCGCCTCACGACTCT...GCGTTTCCCTGTGTTGTCAGCGCTTGCTTTCCACTGCAACTTTTCTACCTTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR TCA 90 bp TCATGCAAAAGGACGAGGGTGAAGTGCAGTTACGTGGTGACACACAGTGTTACTGTCTCAGGTCCTCAATaGGATGGAGCACAGGCATGG +
Preference number: 4 (lower is better)
Translates to: SCKRTRVKCSYVVTHSVTVSGPQ*DGAQAW
Trigger: CCATGCCTGTGCTCCATCTCATTGAGGACCTGAGAC...AGTAACACTGTGTGTCACCACGTAACTGCACTTCACCCTCGTCCTTTTGCATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp ATGAGGGTAGATGAAAGCTGTTGGGGGATCAAGAGGAGAGTCCTGATTCACAGGCTTAGCAGCTCCTGCTaGAGCATCTCTTCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: MRVDESCWGIKRRVLIHRLSSSC*SISSAA
Trigger: TGCTGCAGAAGAGATGCTTCAGCAGGAGCTGCTAAG...CCTGTGAATCAGGACTCTCCTCTTGATCCCCCAACAGCTTTCATCTACCCTCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR TCA 90 bp ATGGTCCAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTGGCTCCCATACCAACCAGCTTaGGCTTCAGCTCAGACACCT +
Preference number: 4 (lower is better)
Translates to: MVQTSAVGTLISAKTLWLPYQPA*ASAQTP
Trigger: AGGTGTCTGAGCTGAAGCTCAAGCTGGTTGGTATGG...GAGCCACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTGGACCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp TCTAGGAAAGTGAGGGACCAAGTAGAAAACCAGGAGCAGCGATCAGACAGCAAGCCATACCAACCAGCTTaGGCTTCAGCTCAGACACCT +
Preference number: 4 (lower is better)
Translates to: SRKVRDQVENQEQRSDSKPYQPA*ASAQTP
Trigger: AGGTGTCTGAGCTGAAGCTCAAGCTGGTTGGTATGG...CTTGCTGTCTGATCGCTGCTCCTGGTTTTCTACTTGGTCCCTCACTTTCCTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR TCA 90 bp CACTATGGTCCAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTGGGAGAGGGTTCTTTCTaGAGGCCCCTGAGTTGCCAT +
Preference number: 4 (lower is better)
Translates to: HYGPNIRCWHFDLSQDFVGEGSF*RPLSCH
Trigger: ATGGCAACTCAGGGGCCTTCAGAAAGAACCCTCTCC...CACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTGGACCATAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp ATGGTCCAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTGGCTCCAGGAGAGTTTCTTCTaGGCCCTGCTCTCCAGTGAT +
Preference number: 4 (lower is better)
Translates to: MVQTSAVGTLISAKTLWLQESFF*ALLSSD
Trigger: ATCACTGGAGAGCAGGGCTCAGAAGAAACTCTCCTG...GAGCCACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTGGACCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR GCA 90 bp AAAGTGTGTAGTGAGACCAGCCCAAAGACACAATTGTTTTCTGTAGATCATGCACCTTGGTCCCGCAGTTaGTCGGAGCCCACCTCGTCG +
Preference number: 4 (lower is better)
Translates to: KVCSETSPKTQLFSVDHAPWSRS*SEPTSS
Trigger: CGACGAGGTGGGCTCCGAGCAACTGCGGGACCAAGG...TGCATGATCTACAGAAAACAATTGTGTCTTTGGGCTGGTCTCACTACACACTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR GCA 90 bp TTTCACTCAGCCACTGCAGGACACACAGAACAGCTTATACAACCTTTCCCCACCAGTGCCTTCGGAAGGTaGCATCTGGTCCAAACCATC +
Preference number: 4 (lower is better)
Translates to: FHSATAGHTEQLIQPFPTSAFGR*HLVQTI
Trigger: GATGGTTTGGACCAGATGGCACCTTCCGAAGGCACT...GGTGGGGAAAGGTTGTATAAGCTGTTCTGTGTGTCCTGCAGTGGCTGAGTGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp CCTCTGCTTTTGCTCCGGTCAACGCCTACATCCAAAGAGGCCCATAAGCTCCATGGTCCTTATCCTCATTaGCAACCAGCAGTGTTTCCA +
Preference number: 4 (lower is better)
Translates to: PLLLLRSTPTSKEAHKLHGPYPH*QPAVFP
Trigger: TGGAAACACTGCTGGTTGCCAATGAGGATAAGGACC...ATGGAGCTTATGGGCCTCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp CATATTCTGACCATCCTTAAAGTGTGTAGTGAGACCAGCCCAAAGACACAATTGGAGGTGGTCCTGGGGTaGGAGAGCTGCATCGTGGTG +
Preference number: 4 (lower is better)
Translates to: HILTILKVCSETSPKTQLEVVLG*ESCIVV
Trigger: CACCACGATGCAGCTCTCCCACCCCAGGACCACCTC...CAATTGTGTCTTTGGGCTGGTCTCACTACACACTTTAAGGATGGTCAGAATATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp CAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTGGCTCACAAACCTTAGCAGCTCCTGCTaGAGCATCTCTTCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: QTSAVGTLISAKTLWLTNLSSSC*SISSAA
Trigger: TGCTGCAGAAGAGATGCTTCAGCAGGAGCTGCTAAG...GTTTGTGAGCCACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp CACTATGGTCCAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTGAGACGGTGGATTTCTTaGTCTCGCTCTGCATGGTCG +
Preference number: 4 (lower is better)
Translates to: HYGPNIRCWHFDLSQDFVRRWIS*SRSAWS
Trigger: CGACCATGCAGAGCGAGATCAAGAAATCCACCGTCT...CACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTGGACCATAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR GCA 90 bp TACAACCTTTCCCCACCTCCAATCACAGGCTTTCATGAACTAACAGCTCATTGTATGATCCCGTCCATCTaGTCCAGGGCAGCTTCCAGC +
Preference number: 4 (lower is better)
Translates to: YNLSPPPITGFHELTAHCMIPSI*SRAASS
Trigger: GCTGGAAGCTGCCCTGGAGCAGATGGACGGGATCAT...ACAATGAGCTGTTAGTTCATGAAAGCCTGTGATTGGAGGTGGGGAAAGGTTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR GCA 90 bp TTGGGGGATCAAGAGGAGAGTCCTGATTCACAGGCCCAGGCTTCTGGAAGTGGATTCACAGTTAGGTATTaGAGCATTCGCCCATCAACT +
Preference number: 4 (lower is better)
Translates to: LGDQEESPDSQAQASGSGFTVRY*SIRPST
Trigger: AGTTGATGGGCGAATGCTGCAATACCTAACTGTGAA...TCCACTTCCAGAAGCCTGGGCCTGTGAATCAGGACTCTCCTCTTGATCCCCCAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp CACTATGGTCCAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTGGCATTGAGCTTCACCTaGTGGCCTTCCAGACACACT +
Preference number: 4 (lower is better)
Translates to: HYGPNIRCWHFDLSQDFVALSFT*WPSRHT
Trigger: AGTGTGTCTGGAAGGCCACCAGGTGAAGCTCAATGC...CACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTGGACCATAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp AAGGACGAGGGTGAAGTGCAGTTACGTGGTGACACACAGTGTTACTGTGAGCTCATCAGATCCAACTTCTaGGTCTCCAGAGATGTGCGA +
Preference number: 4 (lower is better)
Translates to: KDEGEVQLRGDTQCYCELIRSNF*VSRDVR
Trigger: TCGCACATCTCTGGAGACCCAGAAGTTGGATCTGAT...GAGCTCACAGTAACACTGTGTGTCACCACGTAACTGCACTTCACCCTCGTCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp CATATTCTGACCATCCTTAAAGTGTGTAGTGAGACCAGCCCAAAGACACAATTGCTTGGGCTCTCCCACTaGGGACAGCTGGTTCCCATC +
Preference number: 4 (lower is better)
Translates to: HILTILKVCSETSPKTQLLGLSH*GQLVPI
Trigger: GATGGGAACCAGCTGTCCCCAGTGGGAGAGCCCAAG...CAATTGTGTCTTTGGGCTGGTCTCACTACACACTTTAAGGATGGTCAGAATATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp AGAACTGAACCTTTTGCGATTACCCAGGGCCTGCCCTCTGCTCATGTGTTTCAAACCAGCTTCTTCCTGTaGAGGGGGTGTTTAATCCCT +
Preference number: 4 (lower is better)
Translates to: RTEPFAITQGLPSAHVFQTSFFL*RGCLIP
Trigger: AGGGATTAAACACCCCCTCCACAGGAAGAAGCTGGT...TTGAAACACATGAGCAGAGGGCAGGCCCTGGGTAATCGCAAAAGGTTCAGTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp ATGAGGGTAGATGAAAGCTGTTGGGGGATCAAGAGGAGAGTCCTGATTCACAGGGAGGAGCGTCTTCTGTaGGGGGATGTTAAGAAGCAT +
Preference number: 4 (lower is better)
Translates to: MRVDESCWGIKRRVLIHREERLL*GDVKKH
Trigger: ATGCTTCTTAACATCCCCCCACAGAAGACGCTCCTC...CCTGTGAATCAGGACTCTCCTCTTGATCCCCCAACAGCTTTCATCTACCCTCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp GAAAGTGAGGGACCAAGTAGAAAACCAGGAGCAGCGATCAGACAGCAAGGCTGGAAACCATCTAGTTCATaGTTGTCAAGGGGACTGAGG +
Preference number: 4 (lower is better)
Translates to: ESEGPSRKPGAAIRQQGWKPSSS*LSRGLR
Trigger: CCTCAGTCCCCTTGACAACCATGAACTAGATGGTTT...CCAGCCTTGCTGTCTGATCGCTGCTCCTGGTTTTCTACTTGGTCCCTCACTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp GGGCTCCACGTGTGCCTCTCTAGGCTCTCAGCCATGAAGAATGTCATCTGTAGTAAACCATCTAGTTCATaGTTGTCAAGGGGACTGAGG +
Preference number: 4 (lower is better)
Translates to: GLHVCLSRLSAMKNVICSKPSSS*LSRGLR
Trigger: CCTCAGTCCCCTTGACAACCATGAACTAGATGGTTT...ACTACAGATGACATTCTTCATGGCTGAGAGCCTAGAGAGGCACACGTGGAGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
CDS-3UTR TCA 90 bp TCACTCAGCCACTGCAGGACACACAGAACAGCTTATACAACCTTTCCCCACCTCTTGAAGTTTCCAGACTaGGTTCTTCGGATCTTTCCC +
Preference number: 4 (lower is better)
Translates to: SLSHCRTHRTAYTTFPHLLKFPD*VLRIFP
Trigger: GGGAAAGATCCGAAGAACTCAGTCTGGAAACTTCAA...GAGGTGGGGAAAGGTTGTATAAGCTGTTCTGTGTGTCCTGCAGTGGCTGAGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR TCA 90 bp AAGGACGAGGGTGAAGTGCAGTTACGTGGTGACACACAGTGTTACTGTGAGCTCCATTTGATGCTGAGATaGTGTAGTTGGCTGGTGACT +
Preference number: 4 (lower is better)
Translates to: KDEGEVQLRGDTQCYCELHLMLR*CSWLVT
Trigger: AGTCACCAGCCAACTACATCATCTCAGCATCAAATG...GAGCTCACAGTAACACTGTGTGTCACCACGTAACTGCACTTCACCCTCGTCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp ACATTGGGGCTCCACGTGTGCCTCTCTAGGCTCTCAGCCATGAAGAATGTCATCTTGACATGTAGCACGTaGATAGCACATTTGATGCTG +
Preference number: 4 (lower is better)
Translates to: TLGLHVCLSRLSAMKNVILTCST*IAHLML
Trigger: CAGCATCAAATGTGCTATTCACGTGCTACATGTCAA...GATGACATTCTTCATGGCTGAGAGCCTAGAGAGGCACACGTGGAGCCCCAATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR GCA 90 bp CCTCTGCTTTTGCTCCGGTCAACGCCTACATCCAAAGAGGCCCATAAGCTCCATTCAAGTCTTCTAGACTaGAGGAGAGTTTCTTCTGAG +
Preference number: 4 (lower is better)
Translates to: PLLLLRSTPTSKEAHKLHSSLLD*RRVSSE
Trigger: CTCAGAAGAAACTCTCCTGCAGTCTAGAAGACTTGA...ATGGAGCTTATGGGCCTCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp TCAGCCACTGCAGGACACACAGAACAGCTTATACAACCTTTCCCCACCTCCAATATCAGATCCAACTTCTaGGTCTCCAGAGATGTGCGA +
Preference number: 4 (lower is better)
Translates to: SATAGHTEQLIQPFPTSNIRSNF*VSRDVR
Trigger: TCGCACATCTCTGGAGACCCAGAAGTTGGATCTGAT...ATTGGAGGTGGGGAAAGGTTGTATAAGCTGTTCTGTGTGTCCTGCAGTGGCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp TACAACCTTTCCCCACCTCCAATCACAGGCTTTCATGAACTAACAGCTCATTGTCTACCTCAGCCTTGGTaGCCTTCAGCTCCCACTCAT +
Preference number: 4 (lower is better)
Translates to: YNLSPPPITGFHELTAHCLPQPW*PSAPTH
Trigger: ATGAGTGGGAGCTGAAGGCCACCAAGGCTGAGGTAG...ACAATGAGCTGTTAGTTCATGAAAGCCTGTGATTGGAGGTGGGGAAAGGTTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp GTCACTATGGTCCAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGCACTCCATTACCCTGTaGTTGGACCACTGCACAACT +
Preference number: 4 (lower is better)
Translates to: VTMVQTSAVGTLISAKTLHSITL*LDHCTT
Trigger: AGTTGTGCAGTGGTCCAACCACAGGGTAATGGAGTG...CAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTGGACCATAGTGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR GCA 90 bp CAAAAGGTAGAAAAGTTGCAGTGGAAAGCAAGCGCTGACAACACAGGGAAACGCAGCTGTTTTAGTGCCTaGAATGATCCCGTCCATCTG +
Preference number: 4 (lower is better)
Translates to: QKVEKLQWKASADNTGKRSCFSA*NDPVHL
Trigger: CAGATGGACGGGATCATTGCAGGCACTAAAACAGCT...GCGTTTCCCTGTGTTGTCAGCGCTTGCTTTCCACTGCAACTTTTCTACCTTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR GCA 90 bp TACAACCTTTCCCCACCTCCAATCACAGGCTTTCATGAACTAACAGCTCATTGTCTGTGGTTGGACCACTaGACAACTTCGGAAGGGGAA +
Preference number: 4 (lower is better)
Translates to: YNLSPPPITGFHELTAHCLWLDH*TTSEGE
Trigger: TTCCCCTTCCGAAGTTGTGCAGTGGTCCAACCACAG...ACAATGAGCTGTTAGTTCATGAAAGCCTGTGATTGGAGGTGGGGAAAGGTTGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR GCA 90 bp AAAGTGTGTAGTGAGACCAGCCCAAAGACACAATTGTTTTCTGTAGATCATGCACCCTCGAAGGTTGGGTaGATACTCTGCCAGGTCCAC +
Preference number: 4 (lower is better)
Translates to: KVCSETSPKTQLFSVDHAPSKVG*ILCQVH
Trigger: GTGGACCTGGCAGAGTATGCACCCAACCTTCGAGGG...TGCATGATCTACAGAAAACAATTGTGTCTTTGGGCTGGTCTCACTACACACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp CATATTCTGACCATCCTTAAAGTGTGTAGTGAGACCAGCCCAAAGACACAATTGCGGGAGAGCTGGCTGTaGAGACGCTCAATTTCTGCA +
Preference number: 4 (lower is better)
Translates to: HILTILKVCSETSPKTQLRESWL*RRSISA
Trigger: TGCAGAAATTGAGCGTCTCCACAGCCAGCTCTCCCG...CAATTGTGTCTTTGGGCTGGTCTCACTACACACTTTAAGGATGGTCAGAATATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp GAAGTGCAGTTACGTGGTGACACACAGTGTTACTGTGAGCTCTCCGTGCACAGACTTCGGGACTTCCTCTaGGCTTTTATTTGTGGTATT +
Preference number: 4 (lower is better)
Translates to: EVQLRGDTQCYCELSVHRLRDFL*AFICGI
Trigger: AATACCACAAATAAAAGCCCAGAGGAAGTCCCGAAG...TCTGTGCACGGAGAGCTCACAGTAACACTGTGTGTCACCACGTAACTGCACTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp AGGGCCTGCCCTCTGCTCATGTGTTTCAAGCTGAAACATGGATACTATGAATTACCATTACCCTGTGGTTaGACCACTGCACAACTTCGG +
Preference number: 4 (lower is better)
Translates to: RACPLLMCFKLKHGYYELPLPCG*TTAQLR
Trigger: CCGAAGTTGTGCAGTGGTCCAACCACAGGGTAATGG...TAATTCATAGTATCCATGTTTCAGCTTGAAACACATGAGCAGAGGGCAGGCCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp CATATTCTGACCATCCTTAAAGTGTGTAGTGAGACCAGCCCAAAGACACAATTGGCAAAGATCACATACTaGCCCAGGCCGAAATCCTCC +
Preference number: 4 (lower is better)
Translates to: HILTILKVCSETSPKTQLAKITY*PRPKSS
Trigger: GGAGGATTTCGGCCTGGGTCAGTATGTGATCTTTGC...CAATTGTGTCTTTGGGCTGGTCTCACTACACACTTTAAGGATGGTCAGAATATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR GCA 90 bp AACCTTTTGCGATTACCCAGGGCCTGCCCTCTGCTCATGTGTTTCAAGCTGAAATCAAGTCTTCTAGACTaGAGGAGAGTTTCTTCTGAG +
Preference number: 4 (lower is better)
Translates to: NLLRLPRACPLLMCFKLKSSLLD*RRVSSE
Trigger: CTCAGAAGAAACTCTCCTGCAGTCTAGAAGACTTGA...TTTCAGCTTGAAACACATGAGCAGAGGGCAGGCCCTGGGTAATCGCAAAAGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR GCA 90 bp ATGGTCCAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTGGCTCTTCACAGTTAGGTATTaGAGCATTCGCCCATCAACT +
Preference number: 4 (lower is better)
Translates to: MVQTSAVGTLISAKTLWLFTVRY*SIRPST
Trigger: AGTTGATGGGCGAATGCTGCAATACCTAACTGTGAA...GAGCCACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTGGACCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR GCA 90 bp CTGACCATCCTTAAAGTGTGTAGTGAGACCAGCCCAAAGACACAATTGTTTTCTCTGTGGTTGGACCACTaGACAACTTCGGAAGGGGAA +
Preference number: 4 (lower is better)
Translates to: LTILKVCSETSPKTQLFSLWLDH*TTSEGE
Trigger: TTCCCCTTCCGAAGTTGTGCAGTGGTCCAACCACAG...AGAAAACAATTGTGTCTTTGGGCTGGTCTCACTACACACTTTAAGGATGGTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR GCA 90 bp CCTTCACCTCTGCAGGATCAGCTGCAGTTGGCATATAAAAGTACAAAAGGTAGACTATCTGTGTCACAGTaGCTTCGGAAGGTGCCATCT +
Preference number: 4 (lower is better)
Translates to: PSPLQDQLQLAYKSTKGRLSVSQ*LRKVPS
Trigger: AGATGGCACCTTCCGAAGGCACTGTGACACAGATAG...TCTACCTTTTGTACTTTTATATGCCAACTGCAGCTGATCCTGCAGAGGTGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp ATTCTGACCATCCTTAAAGTGTGTAGTGAGACCAGCCCAAAGACACAATTGTTTTATGTAGGTAGCTGTTaGGCCAGGGACCTGGCTCAG +
Preference number: 4 (lower is better)
Translates to: ILTILKVCSETSPKTQLFYVGSC*ARDLAQ
Trigger: CTGAGCCAGGTCCCTGGCCCAACAGCTACCTACATA...AAACAATTGTGTCTTTGGGCTGGTCTCACTACACACTTTAAGGATGGTCAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp CAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTGGCTCACAAACATGTCACCCACTGTCTaGCAAAGATCACATACTGAC +
Preference number: 4 (lower is better)
Translates to: QTSAVGTLISAKTLWLTNMSPTV*QRSHTD
Trigger: GTCAGTATGTGATCTTTGCCAGACAGTGGGTGACAT...GTTTGTGAGCCACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp CTGCTTTTGCTCCGGTCAACGCCTACATCCAAAGAGGCCCATAAGCTCCATCTCAACTGGTCTTTGTATTaGGGTAAGCCAATATCATCA +
Preference number: 4 (lower is better)
Translates to: LLLLRSTPTSKEAHKLHLNWSLY*GKPISS
Trigger: TGATGATATTGGCTTACCCCAATACAAAGACCAGTT...GAGATGGAGCTTATGGGCCTCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp CACTATGGTCCAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTGAAACCATCTAGTTCATaGTTGTCAAGGGGACTGAGG +
Preference number: 4 (lower is better)
Translates to: HYGPNIRCWHFDLSQDFVKPSSS*LSRGLR
Trigger: CCTCAGTCCCCTTGACAACCATGAACTAGATGGTTT...CACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTGGACCATAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp GTCACTATGGTCCAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGCTTATCTGTCCCACCTaGTCCAAACCATCTAGTTCA +
Preference number: 4 (lower is better)
Translates to: VTMVQTSAVGTLISAKTLLICPT*SKPSSS
Trigger: TGAACTAGATGGTTTGGACCAGGTGGGACAGATAAG...CAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTGGACCATAGTGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
3UTR CAA 72 bp ACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTaGTGGCTCACAAACCTAAGGCACTTGAATTCTTCC +
Preference number: 4 (lower is better)
Translates to: TSAVGTLISAKT*WLTNLRHLNSS
Trigger: GGAAGAATTCAAGTGCCTTAGGTTTGTGAGCCACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp ATTCTGACCATCCTTAAAGTGTGTAGTGAGACCAGCCCAAAGACACAATTGTTTAGGGCTTCTCTTTCCTaGGGAAGTGCCAACATCTCC +
Preference number: 4 (lower is better)
Translates to: ILTILKVCSETSPKTQLFRASLS*GSANIS
Trigger: GGAGATGTTGGCACTTCCTCAGGAAAGAGAAGCCCT...AAACAATTGTGTCTTTGGGCTGGTCTCACTACACACTTTAAGGATGGTCAGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp ATGGTCCAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTGGCTCCTATTTCATCTTCATTaGTGGAGAGGGTTCTTTCTG +
Preference number: 4 (lower is better)
Translates to: MVQTSAVGTLISAKTLWLLFHLH*WRGFFL
Trigger: CAGAAAGAACCCTCTCCATCAATGAAGATGAAATAG...GAGCCACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTGGACCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp TCAGCCACTGCAGGACACACAGAACAGCTTATACAACCTTTCCCCACCTCCAATCTATTTCATCTTCATTaGTGGAGAGGGTTCTTTCTG +
Preference number: 4 (lower is better)
Translates to: SATAGHTEQLIQPFPTSNLFHLH*WRGFFL
Trigger: CAGAAAGAACCCTCTCCATCAATGAAGATGAAATAG...ATTGGAGGTGGGGAAAGGTTGTATAAGCTGTTCTGTGTGTCCTGCAGTGGCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR GCA 90 bp TCATGCAAAAGGACGAGGGTGAAGTGCAGTTACGTGGTGACACACAGTGTTACTAGGTGCTTAAGCTCTTaGAGTAACTCCTCTGCTTTT +
Preference number: 4 (lower is better)
Translates to: SCKRTRVKCSYVVTHSVTRCLSS*SNSSAF
Trigger: AAAAGCAGAGGAGTTACTGCAAGAGCTTAAGCACCT...AGTAACACTGTGTGTCACCACGTAACTGCACTTCACCCTCGTCCTTTTGCATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR GCA 90 bp GCAGGACACACAGAACAGCTTATACAACCTTTCCCCACCTCCAATCACAGGCTTACCTTGATTTTGAGGTaGTTAAGCTCTTGCAGTAAC +
Preference number: 4 (lower is better)
Translates to: AGHTEQLIQPFPTSNHRLTLILR*LSSCSN
Trigger: GTTACTGCAAGAGCTTAAGCACCTCAAAATCAAGGT...AAGCCTGTGATTGGAGGTGGGGAAAGGTTGTATAAGCTGTTCTGTGTGTCCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp AACCTTTTGCGATTACCCAGGGCCTGCCCTCTGCTCATGTGTTTCAAGCTGAAACTGGGCTTTTATTTGTaGTATTCCATTTTCGGAAGC +
Preference number: 4 (lower is better)
Translates to: NLLRLPRACPLLMCFKLKLGFYL*YSIFGS
Trigger: GCTTCCGAAAATGGAATACCACAAATAAAAGCCCAG...TTTCAGCTTGAAACACATGAGCAGAGGGCAGGCCCTGGGTAATCGCAAAAGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp CTGACCATCCTTAAAGTGTGTAGTGAGACCAGCCCAAAGACACAATTGTTTTCTGCTTCCCAGGTAATGTaGGGTATTTCTGCTCCGCTA +
Preference number: 4 (lower is better)
Translates to: LTILKVCSETSPKTQLFSASQVM*GISAPL
Trigger: TAGCGGAGCAGAAATACCCCACATTACCTGGGAAGC...AGAAAACAATTGTGTCTTTGGGCTGGTCTCACTACACACTTTAAGGATGGTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp ACTGAACCTTTTGCGATTACCCAGGGCCTGCCCTCTGCTCATGTGTTTCAAGCTAACTGGTCTTTGTATTaGGGTAAGCCAATATCATCA +
Preference number: 4 (lower is better)
Translates to: TEPFAITQGLPSAHVFQANWSLY*GKPISS
Trigger: TGATGATATTGGCTTACCCCAATACAAAGACCAGTT...AGCTTGAAACACATGAGCAGAGGGCAGGCCCTGGGTAATCGCAAAAGGTTCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp CATATTCTGACCATCCTTAAAGTGTGTAGTGAGACCAGCCCAAAGACACAATTGGAGGAGCGTCTTCTGTaGGGGGATGTTAAGAAGCAT +
Preference number: 4 (lower is better)
Translates to: HILTILKVCSETSPKTQLEERLL*GDVKKH
Trigger: ATGCTTCTTAACATCCCCCCACAGAAGACGCTCCTC...CAATTGTGTCTTTGGGCTGGTCTCACTACACACTTTAAGGATGGTCAGAATATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp TGGCCACTCTATAGTAAGGTACAATCAAATTACATTGTCACTATGGTCCAAACAGAACTTTGGCGGTGGTaGTCAGAGGTGTGTAGGCGG +
Preference number: 4 (lower is better)
Translates to: WPLYSKVQSNYIVTMVQTELWRW*SEVCRR
Trigger: CCGCCTACACACCTCTGACCACCACCGCCAAAGTTC...TGTTTGGACCATAGTGACAATGTAATTTGATTGTACCTTACTATAGAGTGGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp GAAACAAGTGGCCACTCTATAGTAAGGTACAATCAAATTACATTGTCACTATGGCTAGCAGCACCGTGGTaGTTTACCTGGGACAAGCTG +
Preference number: 4 (lower is better)
Translates to: ETSGHSIVRYNQITLSLWLAAPW*FTWDKL
Trigger: CAGCTTGTCCCAGGTAAATCACCACGGTGCTGCTAG...CCATAGTGACAATGTAATTTGATTGTACCTTACTATAGAGTGGCCACTTGTTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp AAAGTGTGTAGTGAGACCAGCCCAAAGACACAATTGTTTTCTGTAGATCATGCATCCTTTTCCATGTCCTaGGGGGTAGCTGTCAGTAGT +
Preference number: 4 (lower is better)
Translates to: KVCSETSPKTQLFSVDHASFSMS*GVAVSS
Trigger: ACTACTGACAGCTACCCCTCAGGACATGGAAAAGGA...TGCATGATCTACAGAAAACAATTGTGTCTTTGGGCTGGTCTCACTACACACTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp TCATGCAAAAGGACGAGGGTGAAGTGCAGTTACGTGGTGACACACAGTGTTACTGATGTAGTTGGCTGGTaGCTTTTAAGAAGAGTAGAT +
Preference number: 4 (lower is better)
Translates to: SCKRTRVKCSYVVTHSVTDVVGW*LLRRVD
Trigger: ATCTACTCTTCTTAAAAGTCACCAGCCAACTACATC...AGTAACACTGTGTGTCACCACGTAACTGCACTTCACCCTCGTCCTTTTGCATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp GAAACAAGTGGCCACTCTATAGTAAGGTACAATCAAATTACATTGTCACTATGGGACCAATCAGGGCGTTaGACTTGGTGGTCAGATGGC +
Preference number: 4 (lower is better)
Translates to: ETSGHSIVRYNQITLSLWDQSGR*TWWSDG
Trigger: GCCATCTGACCACCAAGTTCAACGCCCTGATTGGTC...CCATAGTGACAATGTAATTTGATTGTACCTTACTATAGAGTGGCCACTTGTTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp AGAACTGAACCTTTTGCGATTACCCAGGGCCTGCCCTCTGCTCATGTGTTTCAACATGTTTCCAAAATGTaGAAATCCAAGTTTCCTAGG +
Preference number: 4 (lower is better)
Translates to: RTEPFAITQGLPSAHVFQHVSKM*KSKFPR
Trigger: CCTAGGAAACTTGGATTTTCACATTTTGGAAACATG...TTGAAACACATGAGCAGAGGGCAGGCCCTGGGTAATCGCAAAAGGTTCAGTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp TTTCACTCAGCCACTGCAGGACACACAGAACAGCTTATACAACCTTTCCCCACCCATGTTTCCAAAATGTaGAAATCCAAGTTTCCTAGG +
Preference number: 4 (lower is better)
Translates to: FHSATAGHTEQLIQPFPTHVSKM*KSKFPR
Trigger: CCTAGGAAACTTGGATTTTCACATTTTGGAAACATG...GGTGGGGAAAGGTTGTATAAGCTGTTCTGTGTGTCCTGCAGTGGCTGAGTGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp GAAACAAGTGGCCACTCTATAGTAAGGTACAATCAAATTACATTGTCACTATGGCTACCTCAGCCTTGGTaGCCTTCAGCTCCCACTCAT +
Preference number: 4 (lower is better)
Translates to: ETSGHSIVRYNQITLSLWLPQPW*PSAPTH
Trigger: ATGAGTGGGAGCTGAAGGCCACCAAGGCTGAGGTAG...CCATAGTGACAATGTAATTTGATTGTACCTTACTATAGAGTGGCCACTTGTTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp TGGCCACTCTATAGTAAGGTACAATCAAATTACATTGTCACTATGGTCCAAACAACCTGTTCTTGCAGCTaGGCTACCTCAGCCTTGGTG +
Preference number: 4 (lower is better)
Translates to: WPLYSKVQSNYIVTMVQTTCSCS*ATSALV
Trigger: CACCAAGGCTGAGGTAGCCCAGCTGCAAGAACAGGT...TGTTTGGACCATAGTGACAATGTAATTTGATTGTACCTTACTATAGAGTGGCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp GAAACAAGTGGCCACTCTATAGTAAGGTACAATCAAATTACATTGTCACTATGGCGTGTCACCCAAATGTaGTCCAGCAGCGCAGACGTT +
Preference number: 4 (lower is better)
Translates to: ETSGHSIVRYNQITLSLWRVTQM*SSSADV
Trigger: AACGTCTGCGCTGCTGGACCACATTTGGGTGACACG...CCATAGTGACAATGTAATTTGATTGTACCTTACTATAGAGTGGCCACTTGTTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp CTGACCATCCTTAAAGTGTGTAGTGAGACCAGCCCAAAGACACAATTGTTTTCTTTGAAGTTTCCAGACTaGGTTCTTCGGATCTTTCCC +
Preference number: 4 (lower is better)
Translates to: LTILKVCSETSPKTQLFSLKFPD*VLRIFP
Trigger: GGGAAAGATCCGAAGAACTCAGTCTGGAAACTTCAA...AGAAAACAATTGTGTCTTTGGGCTGGTCTCACTACACACTTTAAGGATGGTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp CAAAAGGTAGAAAAGTTGCAGTGGAAAGCAAGCGCTGACAACACAGGGAAACGCCATGTTTCCAAAATGTaGAAATCCAAGTTTCCTAGG +
Preference number: 4 (lower is better)
Translates to: QKVEKLQWKASADNTGKRHVSKM*KSKFPR
Trigger: CCTAGGAAACTTGGATTTTCACATTTTGGAAACATG...GCGTTTCCCTGTGTTGTCAGCGCTTGCTTTCCACTGCAACTTTTCTACCTTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
CDS-3UTR GCA 90 bp CCTTCACCTCTGCAGGATCAGCTGCAGTTGGCATATAAAAGTACAAAAGGTAGAAGGTGCTTAAGCTCTTaGAGTAACTCCTCTGCTTTT +
Preference number: 4 (lower is better)
Translates to: PSPLQDQLQLAYKSTKGRRCLSS*SNSSAF
Trigger: AAAAGCAGAGGAGTTACTGCAAGAGCTTAAGCACCT...TCTACCTTTTGTACTTTTATATGCCAACTGCAGCTGATCCTGCAGAGGTGAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CCA 90 bp AAAGTGTGTAGTGAGACCAGCCCAAAGACACAATTGTTTTCTGTAGATCATGCAGGTCCTTATCCTCATTaGCAACCAGCAGTGTTTCCA +
Preference number: 4 (lower is better)
Translates to: KVCSETSPKTQLFSVDHAGPYPH*QPAVFP
Trigger: TGGAAACACTGCTGGTTGCCAATGAGGATAAGGACC...TGCATGATCTACAGAAAACAATTGTGTCTTTGGGCTGGTCTCACTACACACTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR TCA 90 bp CATATTCTGACCATCCTTAAAGTGTGTAGTGAGACCAGCCCAAAGACACAATTGTTGACATGTAGCACGTaGATAGCACATTTGATGCTG +
Preference number: 4 (lower is better)
Translates to: HILTILKVCSETSPKTQLLTCST*IAHLML
Trigger: CAGCATCAAATGTGCTATTCACGTGCTACATGTCAA...CAATTGTGTCTTTGGGCTGGTCTCACTACACACTTTAAGGATGGTCAGAATATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp TATAGTAAGGTACAATCAAATTACATTGTCACTATGGTCCAAACATCCGCTGTTTGGCAGCTTCTCCATTaGGTGTGGCTCCTGAAAGCT +
Preference number: 4 (lower is better)
Translates to: YSKVQSNYIVTMVQTSAVWQLLH*VWLLKA
Trigger: AGCTTTCAGGAGCCACACCCAATGGAGAAGCTGCCA...AACAGCGGATGTTTGGACCATAGTGACAATGTAATTTGATTGTACCTTACTATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp TATAGTAAGGTACAATCAAATTACATTGTCACTATGGTCCAAACATCCGCTGTTGGGCAAAGGGGGCATTaGCATCACATTTCTGTCCCT +
Preference number: 4 (lower is better)
Translates to: YSKVQSNYIVTMVQTSAVGQRGH*HHISVP
Trigger: AGGGACAGAAATGTGATGCCAATGCCCCCTTTGCCC...AACAGCGGATGTTTGGACCATAGTGACAATGTAATTTGATTGTACCTTACTATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CCA 90 bp TCAGAGGCATACAATGCTGAAGGGCAAAGTGGATTTGGAACCAAAAGAAAGAATATGTCACCCACTGTCTaGCAAAGATCACATACTGAC +
Preference number: 4 (lower is better)
Translates to: SEAYNAEGQSGFGTKRKNMSPTV*QRSHTD
Trigger: GTCAGTATGTGATCTTTGCCAGACAGTGGGTGACAT...ATTCTTTCTTTTGGTTCCAAATCCACTTTGCCCTTCAGCATTGTATGCCTCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
3UTR CAA 72 bp AGTGGCCACTCTATAGTAAGGTACAATCAAATTACATaGTCACTATGGTCCAAACATCCGCTGTTGGCACTT +
Preference number: 4 (lower is better)
Translates to: SGHSIVRYNQIT*SLWSKHPLLAL
Trigger: AAGTGCCAACAGCGGATGTTTGGACCATAGTGACAATGTAATTTGATTGTACCTTACTATAGAGTGGCCACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR GCA 90 bp AAAGTGTGTAGTGAGACCAGCCCAAAGACACAATTGTTTTCTGTAGATCATGCAACCATCACTAAAATCTaGAGCTGTTTTAGTGCCTGC +
Preference number: 4 (lower is better)
Translates to: KVCSETSPKTQLFSVDHATITKI*SCFSAC
Trigger: GCAGGCACTAAAACAGCTGCAGATTTTAGTGATGGT...TGCATGATCTACAGAAAACAATTGTGTCTTTGGGCTGGTCTCACTACACACTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR GCA 90 bp TATAGTAAGGTACAATCAAATTACATTGTCACTATGGTCCAAACATCCGCTGTTGTTTCTTCTGAGCCCTaGTCTCCAGTGATTTCTGTG +
Preference number: 4 (lower is better)
Translates to: YSKVQSNYIVTMVQTSAVVSSEP*SPVISV
Trigger: CACAGAAATCACTGGAGAGCAGGGCTCAGAAGAAAC...AACAGCGGATGTTTGGACCATAGTGACAATGTAATTTGATTGTACCTTACTATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR GCA 90 bp GAAACAAGTGGCCACTCTATAGTAAGGTACAATCAAATTACATTGTCACTATGGACCTTGATTTTGAGGTaGTTAAGCTCTTGCAGTAAC +
Preference number: 4 (lower is better)
Translates to: ETSGHSIVRYNQITLSLWTLILR*LSSCSN
Trigger: GTTACTGCAAGAGCTTAAGCACCTCAAAATCAAGGT...CCATAGTGACAATGTAATTTGATTGTACCTTACTATAGAGTGGCCACTTGTTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS CCA 90 bp AACTCAGGTGACCCCTCCCAAGGGGCACAGTCCTGGCTGCAGGGCTaGGGCTTGGCCTCGTGGTCACCGGCCACCAGCTCCTCAGGGTGG +
Preference number: 5 (lower is better)
Translates to: NSGDPSQGAQSWLQG*GLASWSPATSSSGW
Trigger: CCACCCTGAGGAGCTGGTGGCCGGTGACCACGAGGCCAAGCCCCAGCCCTGCAGCCAGGACTGTGCCCCTTGGGAGGGGTCACCTGAGTT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000239294.2
CDS-3UTR CAA 90 bp GCGCTGACAACACAGGGAAACGCGGGGACACGACTGGACACCTGTCCCACCCCTCCTTTGGGGCTCCGTTaGCCATCTGGTGTCACGGGA +
Preference number: 5 (lower is better)
Translates to: ALTTQGNAGTRLDTCPTPPLGLR*PSGVTG
Trigger: TCCCGTGACACCAGATGGCAAACGGAGCCCCAAAGG...AGGGGTGGGACAGGTGTCCAGTCGTGTCCCCGCGTTTCCCTGTGTTGTCAGCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CAA 90 bp GGGCAGCGTCTGAGAACTGAACCTTTTGCGATTACCCAGGGCCTGCCCTCTGCTGCCTTGGTCCCGCAGTaGCTCGGAGCCCACCTCGTC +
Preference number: 5 (lower is better)
Translates to: GQRLRTEPFAITQGLPSAALVPQ*LGAHLV
Trigger: GACGAGGTGGGCTCCGAGCAACTGCGGGACCAAGGC...AGCAGAGGGCAGGCCCTGGGTAATCGCAAAAGGTTCAGTTCTCAGACGCTGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS GCA 90 bp CTGTCCCTTGGTGTCCCTGGTCCTAGAAAGCCTTGGTCCCGCAGTTaGTCGGAGCCCACCTCGTCGAAACTCTGCCATCCCCGGTGCATC +
Preference number: 5 (lower is better)
Translates to: LSLGVPGPRKPWSRS*SEPTSSKLCHPRCI
Trigger: GATGCACCGGGGATGGCAGAGTTTCGACGAGGTGGGCTCCGAGCAACTGCGGGACCAAGGCTTTCTAGGACCAGGGACACCAAGGGACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS-3UTR CAA 90 bp GACAACACAGGGAAACGCGGGGACACGACTGGACACCTGTCCCACCCCTCTGCTGGACCAATCAGGGCGTaGAACTTGGTGGTCAGATGG +
Preference number: 5 (lower is better)
Translates to: DNTGKRGDTTGHLSHPSAGPIRA*NLVVRW
Trigger: CCATCTGACCACCAAGTTCAACGCCCTGATTGGTCC...AGCAGAGGGGTGGGACAGGTGTCCAGTCGTGTCCCCGCGTTTCCCTGTGTTGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
CDS CCA 90 bp AGGAGTTGGTCCTGGCTCAGTAGAGTCGTGAGGCGGTGGATGTCTTaGGAGAGGAGCCCTATCTGTGTCACAGTGCCTTCGGAAGGTGCC +
Preference number: 5 (lower is better)
Translates to: RSWSWLSRVVRRWMS*ERSPICVTVPSEGA
Trigger: GGCACCTTCCGAAGGCACTGTGACACAGATAGGGCTCCTCTCCCAAGACATCCACCGCCTCACGACTCTACTGAGCCAGGACCAACTCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS TCA 90 bp GCCACCAGCTCCTCAGGGTGGTCCCTAGCAAGTAACAGGCGCTCTTaGATCTGCCTGTGGATGTCCAGCTGCAGCCTACACATCTGTTCC +
Preference number: 5 (lower is better)
Translates to: ATSSSGWSLASNRRS*ICLWMSSCSLHICS
Trigger: GGAACAGATGTGTAGGCTGCAGCTGGACATCCACAGGCAGATTCAAGAGCGCCTGTTACTTGCTAGGGACCACCCTGAGGAGCTGGTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239294.2
CDS CCA 90 bp TCTCGCTCTGCATGGTCGCTGTGGAGAGCTGCACTCCGGGAGAGCTaGCTGTGGAGACGCTCAATTTCTGCATCTTTTAGGGCCACCTGT +
Preference number: 5 (lower is better)
Translates to: SRSAWSLWRAALRES*LWRRSISASFRATC
Trigger: ACAGGTGGCCCTAAAAGATGCAGAAATTGAGCGTCTCCACAGCCAGCTCTCCCGGAGTGCAGCTCTCCACAGCGACCATGCAGAGCGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CCA 90 bp GGCATCACATTTCTGTCCCTTGGTGTCCCTGGTCCTAGAAAGCCTTaGTCCCGCAGTTGCTCGGAGCCCACCTCGTCGAAACTCTGCCAT +
Preference number: 5 (lower is better)
Translates to: GITFLSLGVPGPRKP*SRSCSEPTSSKLCH
Trigger: ATGGCAGAGTTTCGACGAGGTGGGCTCCGAGCAACTGCGGGACCAAGGCTTTCTAGGACCAGGGACACCAAGGGACAGAAATGTGATGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CCA 90 bp GGCGTTGAACTTGGTGGTCAGATGGCGCCTGAGGAGCGTCTTCTGTaGGGGGATGTTAAGAAGCATAGCCAGGGTGTCCCCAGTAAAGCG +
Preference number: 5 (lower is better)
Translates to: GVELGGQMAPEERLL*GDVKKHSQGVPSKA
Trigger: CGCTTTACTGGGGACACCCTGGCTATGCTTCTTAACATCCCCCCACAGAAGACGCTCCTCAGGCGCCATCTGACCACCAAGTTCAACGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
ENSMUST00000208159.2
CDS CCA 90 bp GAGACTATATCTTCCCAGCCTCCTTCTGTGTCTCTCAGCTTTGGCTaGCTGCTCCCTGAAGAGTCAGGCTGGAGGGAGGCAGTGGGAGGA +
Preference number: 5 (lower is better)
Translates to: ETISSQPPSVSLSFG*LLPEESGWREAVGG
Trigger: TCCTCCCACTGCCTCCCTCCAGCCTGACTCTTCAGGGAGCAGCCAGCCAAAGCTGAGAGACACAGAAGGAGGCTGGGAAGATATAGTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS GCA 90 bp ACGGTGGATTTCTTGATCTCGCTCTGCATGGTCGCTGTGGAGAGCTaGACTCCGGGAGAGCTGGCTGTGGAGACGCTCAATTTCTGCATC +
Preference number: 5 (lower is better)
Translates to: TVDFLISLCMVAVES*TPGELAVETLNFCI
Trigger: GATGCAGAAATTGAGCGTCTCCACAGCCAGCTCTCCCGGAGTGCAGCTCTCCACAGCGACCATGCAGAGCGAGATCAAGAAATCCACCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS GCA 90 bp TTGGGTGTGGCTCCTGAAAGCTTCCCAGGTAATGTGGGGTATTTCTaGTCCGCTAGGAAAGAGCTGTCCTTGGGCTCTCCCACTGGGGAC +
Preference number: 5 (lower is better)
Translates to: LGVAPESFPGNVGYF*SARKELSLGSPTGD
Trigger: GTCCCCAGTGGGAGAGCCCAAGGACAGCTCTTTCCTAGCGGAGCAGAAATACCCCACATTACCTGGGAAGCTTTCAGGAGCCACACCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CCA 90 bp TCTGCATGGTCGCTGTGGAGAGCTGCACTCCGGGAGAGCTGGCTGTaGAGACGCTCAATTTCTGCATCTTTTAGGGCCACCTGTTCTTGC +
Preference number: 5 (lower is better)
Translates to: SAWSLWRAALRESWL*RRSISASFRATCSC
Trigger: GCAAGAACAGGTGGCCCTAAAAGATGCAGAAATTGAGCGTCTCCACAGCCAGCTCTCCCGGAGTGCAGCTCTCCACAGCGACCATGCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CCA 90 bp CCCTGCTCTCCAGTGATTTCTGTGGCAAAGGAGGTGGTCCTGGGGTaGGAGAGCTGCATCGTGGTGATATCTCTTGCTTCGGGACTTCCT +
Preference number: 5 (lower is better)
Translates to: PCSPVISVAKEVVLG*ESCIVVISLASGLP
Trigger: AGGAAGTCCCGAAGCAAGAGATATCACCACGATGCAGCTCTCCCACCCCAGGACCACCTCCTTTGCCACAGAAATCACTGGAGAGCAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CCA 90 bp CAGCCAGGCGGGTCATTCAGGAGTTGGTCCTGGCTCAGTAGAGTCTaGTCCAAACCATCTAGTTCATGGTTGTCAAGGGGACTGAGGCCC +
Preference number: 5 (lower is better)
Translates to: QPGGSFRSWSWLSRV*SKPSSSWLSRGLRP
Trigger: GGGCCTCAGTCCCCTTGACAACCATGAACTAGATGGTTTGGACCAGACTCTACTGAGCCAGGACCAACTCCTGAATGACCCGCCTGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208159.2
CDS TCA 90 bp GCAACCAGCAGTGTTTCCATCCCCATTTTCAGACGGTGGATTTCTTaGTCTCGCTCTGCATGGTCGCTGTGGAGAGCTGCACTCCGGGAG +
Preference number: 5 (lower is better)
Translates to: ATSSVSIPIFRRWIS*SRSAWSLWRAALRE
Trigger: CTCCCGGAGTGCAGCTCTCCACAGCGACCATGCAGAGCGAGATCAAGAAATCCACCGTCTGAAAATGGGGATGGAAACACTGCTGGTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS TCA 90 bp CTATATCTTCCCAGCCTCCTTCTGTGTCTCCTAATACGGGAGCACTaGCACTCCAGCCGCGATTCAGCTTTGGCTGGCTGCTCCCTGAAG +
Preference number: 5 (lower is better)
Translates to: LYLPSLLLCLLIREH*HSSRDSALAGCSLK
Trigger: CTTCAGGGAGCAGCCAGCCAAAGCTGAATCGCGGCTGGAGTGTCAGTGCTCCCGTATTAGGAGACACAGAAGGAGGCTGGGAAGATATAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS GCA 90 bp AAGCCTTGGTCCCGCAGTTGCTCGGAGCCCACCTCGTCGAAACTCTaGCATCCCCGGTGCATCAGTATTGAAGTTTCCAGACTGAGTTCT +
Preference number: 5 (lower is better)
Translates to: KPWSRSCSEPTSSKL*HPRCISIEVSRLSS
Trigger: AGAACTCAGTCTGGAAACTTCAATACTGATGCACCGGGGATGGCAGAGTTTCGACGAGGTGGGCTCCGAGCAACTGCGGGACCAAGGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CCA 90 bp CTGGGACAAGCTGTCCTCAAACCACTCCTTTATGTAGGTAGCTGTTaGGCCAGGGACCTGGCTCAGGAGGGCTTCTCTTTCCTGAGGAAG +
Preference number: 5 (lower is better)
Translates to: LGQAVLKPLLYVGSC*ARDLAQEGFSFLRK
Trigger: CTTCCTCAGGAAAGAGAAGCCCTCCTGAGCCAGGTCCCTGGCCCAACAGCTACCTACATAAAGGAGTGGTTTGAGGACAGCTTGTCCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
ENSMUST00000208956.2
CDS CCA 90 bp CAGGCTGGAGGGAGGCAGTGGGAGGAGATTTGGCAGCTTCTCCATTaGGTGTGGCTCCTGAAAGCTTCCCAGGTAATGTGGGGTATTTCT +
Preference number: 5 (lower is better)
Translates to: QAGGRQWEEIWQLLH*VWLLKASQVMWGIS
Trigger: AGAAATACCCCACATTACCTGGGAAGCTTTCAGGAGCCACACCCAATGGAGAAGCTGCCAAATCTCCTCCCACTGCCTCCCTCCAGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CCA 90 bp GAGAGGAGCCCTATCTGTGTCACAGTGCCTTCGGAAGGTGCCATCTaGTCCAAACCATCTAGTTCATGGTTGTCAAGGGGACTGAGGCCC +
Preference number: 5 (lower is better)
Translates to: ERSPICVTVPSEGAI*SKPSSSWLSRGLRP
Trigger: GGGCCTCAGTCCCCTTGACAACCATGAACTAGATGGTTTGGACCAGATGGCACCTTCCGAAGGCACTGTGACACAGATAGGGCTCCTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CAA 90 bp TCACTCAGCCACTGCAGGACACACAGAACAGCTTATACAACCTTTCCCCACCTCCGGGAGACTGAGGGCTaGACTCAGTCCCAGACGAAG +
Preference number: 5 (lower is better)
Translates to: SLSHCRTHRTAYTTFPHLRETEG*TQSQTK
Trigger: CTTCGTCTGGGACTGAGTCAAGCCCTCAGTCTCCCG...GAGGTGGGGAAAGGTTGTATAAGCTGTTCTGTGTGTCCTGCAGTGGCTGAGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CAA 90 bp GGACACCTGTCCCACCCCTCTGCTTTTGCTCCGGTCAACGCCTACATCCAAAGACTCCTGTGCAGGCAGTaGGGGTTGAACTTGTTGACA +
Preference number: 5 (lower is better)
Translates to: GHLSHPSAFAPVNAYIQRLLCRQ*GLNLLT
Trigger: TGTCAACAAGTTCAACCCCAACTGCCTGCACAGGAG...TCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS TCA 90 bp CTGTGGCAAAGGAGGTGGTCCTGGGGTGGGAGAGCTGCATCGTGGTaGTATCTCTTGCTTCGGGACTTCCTCTGGGCTTTTATTTGTGGT +
Preference number: 5 (lower is better)
Translates to: LWQRRWSWGGRAASW*YLLLRDFLWAFICG
Trigger: ACCACAAATAAAAGCCCAGAGGAAGTCCCGAAGCAAGAGATATCACCACGATGCAGCTCTCCCACCCCAGGACCACCTCCTTTGCCACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS GCA 90 bp CGCAGTTGCTCGGAGCCCACCTCGTCGAAACTCTGCCATCCCCGGTaGATCAGTATTGAAGTTTCCAGACTGAGTTCTTCGGATCTTTCC +
Preference number: 5 (lower is better)
Translates to: RSCSEPTSSKLCHPR*ISIEVSRLSSSDLS
Trigger: GGAAAGATCCGAAGAACTCAGTCTGGAAACTTCAATACTGATGCACCGGGGATGGCAGAGTTTCGACGAGGTGGGCTCCGAGCAACTGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS GCA 90 bp ACTGACCCAGGCCGAAATCCTCCATCCATGTACATACGCGTTCTGTaGTCCACTGGGCAAAGGGGGCATTGGCATCACATTTCTGTCCCT +
Preference number: 5 (lower is better)
Translates to: TDPGRNPPSMYIRVL*STGQRGHWHHISVP
Trigger: AGGGACAGAAATGTGATGCCAATGCCCCCTTTGCCCAGTGGAGCACAGAACGCGTATGTACATGGATGGAGGATTTCGGCCTGGGTCAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CCA 90 bp AGGCCGAAATCCTCCATCCATGTACATACGCGTTCTGTGCTCCACTaGGCAAAGGGGGCATTGGCATCACATTTCTGTCCCTTGGTGTCC +
Preference number: 5 (lower is better)
Translates to: RPKSSIHVHTRSVLH*AKGALASHFCPLVS
Trigger: GGACACCAAGGGACAGAAATGTGATGCCAATGCCCCCTTTGCCCAGTGGAGCACAGAACGCGTATGTACATGGATGGAGGATTTCGGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS-3UTR CAA 90 bp ACATTGGGGCTCCACGTGTGCCTCTCTAGGCTCTCAGCCATGAAGAATGTCATCGCAGTGGGAGGAGATTaGGCAGCTTCTCCATTGGGT +
Preference number: 5 (lower is better)
Translates to: TLGLHVCLSRLSAMKNVIAVGGD*AASPLG
Trigger: ACCCAATGGAGAAGCTGCCAAATCTCCTCCCACTGC...GATGACATTCTTCATGGCTGAGAGCCTAGAGAGGCACACGTGGAGCCCCAATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CAA 90 bp AACCTTTTGCGATTACCCAGGGCCTGCCCTCTGCTCATGTGTTTCAAGCTGAAACCTTTGGGGCTCCGTTaGCCATCTGGTGTCACGGGA +
Preference number: 5 (lower is better)
Translates to: NLLRLPRACPLLMCFKLKPLGLR*PSGVTG
Trigger: TCCCGTGACACCAGATGGCAAACGGAGCCCCAAAGG...TTTCAGCTTGAAACACATGAGCAGAGGGCAGGCCCTGGGTAATCGCAAAAGGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CAA 90 bp CCTTCACCTCTGCAGGATCAGCTGCAGTTGGCATATAAAAGTACAAAAGGTAGAGCCTTGGTCCCGCAGTaGCTCGGAGCCCACCTCGTC +
Preference number: 5 (lower is better)
Translates to: PSPLQDQLQLAYKSTKGRALVPQ*LGAHLV
Trigger: GACGAGGTGGGCTCCGAGCAACTGCGGGACCAAGGC...TCTACCTTTTGTACTTTTATATGCCAACTGCAGCTGATCCTGCAGAGGTGAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CAA 90 bp CAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTGGCTCACAAACAGGAAAGAGCTGTCCTaGGGCTCTCCCACTGGGGAC +
Preference number: 5 (lower is better)
Translates to: QTSAVGTLISAKTLWLTNRKELS*GSPTGD
Trigger: GTCCCCAGTGGGAGAGCCCAAGGACAGCTCTTTCCT...GTTTGTGAGCCACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CAA 90 bp CAAAAGGTAGAAAAGTTGCAGTGGAAAGCAAGCGCTGACAACACAGGGAAACGCCCACTCCCTCGAAGGTaGGGTGCATACTCTGCCAGG +
Preference number: 5 (lower is better)
Translates to: QKVEKLQWKASADNTGKRPLPRR*GAYSAR
Trigger: CCTGGCAGAGTATGCACCCAACCTTCGAGGGAGTGG...GCGTTTCCCTGTGTTGTCAGCGCTTGCTTTCCACTGCAACTTTTCTACCTTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS TCA 90 bp TTAATGCCTTTGGGGCTCCGTTTGCCATCTGGTGTCACGGGAGACTaGGGGCTTGACTCAGTCCCAGACGAAGCAGATGAGACTATATCT +
Preference number: 5 (lower is better)
Translates to: LMPLGLRLPSGVTGD*GLDSVPDEADETIS
Trigger: AGATATAGTCTCATCTGCTTCGTCTGGGACTGAGTCAAGCCCTCAGTCTCCCGTGACACCAGATGGCAAACGGAGCCCCAAAGGCATTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS TCA 90 bp GGAGCCCACCTCGTCGAAACTCTGCCATCCCCGGTGCATCAGTATTaGAGTTTCCAGACTGAGTTCTTCGGATCTTTCCCCAGAACTTCT +
Preference number: 5 (lower is better)
Translates to: GAHLVETLPSPVHQY*SFQTEFFGSFPRTS
Trigger: AGAAGTTCTGGGGAAAGATCCGAAGAACTCAGTCTGGAAACTTCAATACTGATGCACCGGGGATGGCAGAGTTTCGACGAGGTGGGCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS-3UTR CAA 90 bp TCACTCAGCCACTGCAGGACACACAGAACAGCTTATACAACCTTTCCCCACCTCCGGTCCTTATCCTCATaGGCAACCAGCAGTGTTTCC +
Preference number: 5 (lower is better)
Translates to: SLSHCRTHRTAYTTFPHLRSLSS*ATSSVS
Trigger: GGAAACACTGCTGGTTGCCAATGAGGATAAGGACCG...GAGGTGGGGAAAGGTTGTATAAGCTGTTCTGTGTGTCCTGCAGTGGCTGAGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CAA 90 bp CCTCTGCTTTTGCTCCGGTCAACGCCTACATCCAAAGAGGCCCATAAGCTCCATTCACATTTCTGTCCCTaGGTGTCCCTGGTCCTAGAA +
Preference number: 5 (lower is better)
Translates to: PLLLLRSTPTSKEAHKLHSHFCP*VSLVLE
Trigger: TTCTAGGACCAGGGACACCAAGGGACAGAAATGTGA...ATGGAGCTTATGGGCCTCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS GCA 90 bp CACCGTGTCACCCAAATGTGGTCCAGCAGCGCAGACGTTTCTTCTTaGTTGGCGTTGATAGCTTTCACTGCTAAAACCAGCTTCTTCCTG +
Preference number: 5 (lower is better)
Translates to: HRVTQMWSSSADVSS*LALIAFTAKTSFFL
Trigger: CAGGAAGAAGCTGGTTTTAGCAGTGAAAGCTATCAACGCCAAGCAAGAAGAAACGTCTGCGCTGCTGGACCACATTTGGGTGACACGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS-3UTR CAA 90 bp TTTCACTCAGCCACTGCAGGACACACAGAACAGCTTATACAACCTTTCCCCACCTCCATACCAACCAGCTaGAGCTTCAGCTCAGACACC +
Preference number: 5 (lower is better)
Translates to: FHSATAGHTEQLIQPFPTSIPTS*SFSSDT
Trigger: GGTGTCTGAGCTGAAGCTCAAGCTGGTTGGTATGGA...GGTGGGGAAAGGTTGTATAAGCTGTTCTGTGTGTCCTGCAGTGGCTGAGTGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CAA 90 bp CCTTCACCTCTGCAGGATCAGCTGCAGTTGGCATATAAAAGTACAAAAGGTAGAAGGAAAGAGCTGTCCTaGGGCTCTCCCACTGGGGAC +
Preference number: 5 (lower is better)
Translates to: PSPLQDQLQLAYKSTKGRRKELS*GSPTGD
Trigger: GTCCCCAGTGGGAGAGCCCAAGGACAGCTCTTTCCT...TCTACCTTTTGTACTTTTATATGCCAACTGCAGCTGATCCTGCAGAGGTGAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CAA 90 bp CAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTGGCTCACAAACTGGGCAAAGGGGGCATaGGCATCACATTTCTGTCCC +
Preference number: 5 (lower is better)
Translates to: QTSAVGTLISAKTLWLTNWAKGA*ASHFCP
Trigger: GGGACAGAAATGTGATGCCAATGCCCCCTTTGCCCA...GTTTGTGAGCCACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CAA 90 bp CAAAAGGTAGAAAAGTTGCAGTGGAAAGCAAGCGCTGACAACACAGGGAAACGCTGGGCAAAGGGGGCATaGGCATCACATTTCTGTCCC +
Preference number: 5 (lower is better)
Translates to: QKVEKLQWKASADNTGKRWAKGA*ASHFCP
Trigger: GGGACAGAAATGTGATGCCAATGCCCCCTTTGCCCA...GCGTTTCCCTGTGTTGTCAGCGCTTGCTTTCCACTGCAACTTTTCTACCTTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CAA 90 bp GGACACCTGTCCCACCCCTCTGCTTTTGCTCCGGTCAACGCCTACATCCAAAGATTCGCCCATCAACTCTaGATTCATGAAACTGGTCTT +
Preference number: 5 (lower is better)
Translates to: GHLSHPSAFAPVNAYIQRFAHQL*IHETGL
Trigger: AAGACCAGTTTCATGAATCAAGAGTTGATGGGCGAA...TCTTTGGATGTAGGCGTTGACCGGAGCAAAAGCAGAGGGGTGGGACAGGTGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CAA 90 bp CAAAAGGTAGAAAAGTTGCAGTGGAAAGCAAGCGCTGACAACACAGGGAAACGCGGACCAATCAGGGCGTaGAACTTGGTGGTCAGATGG +
Preference number: 5 (lower is better)
Translates to: QKVEKLQWKASADNTGKRGPIRA*NLVVRW
Trigger: CCATCTGACCACCAAGTTCAACGCCCTGATTGGTCC...GCGTTTCCCTGTGTTGTCAGCGCTTGCTTTCCACTGCAACTTTTCTACCTTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
CDS-3UTR CAA 90 bp TCTAGGAAAGTGAGGGACCAAGTAGAAAACCAGGAGCAGCGATCAGACAGCAAGGCGGGTGAGGCCATTTaGTCTCGCTTTTCCTGTTCA +
Preference number: 5 (lower is better)
Translates to: SRKVRDQVENQEQRSDSKAGEAI*SRFSCS
Trigger: TGAACAGGAAAAGCGAGACAAAATGGCCTCACCCGC...CTTGCTGTCTGATCGCTGCTCCTGGTTTTCTACTTGGTCCCTCACTTTCCTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS TCA 90 bp AGTGTATGTCCAGATGTCACCCACTGTCTGGCAAAGATCACATACTaGCCCAGGCCGAAATCCTCCATCCATGTACATACGCGTTCTGTG +
Preference number: 5 (lower is better)
Translates to: SVCPDVTHCLAKITY*PRPKSSIHVHTRSV
Trigger: CACAGAACGCGTATGTACATGGATGGAGGATTTCGGCCTGGGTCAGTATGTGATCTTTGCCAGACAGTGGGTGACATCTGGACATACACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS-3UTR CAA 90 bp TCATGCAAAAGGACGAGGGTGAAGTGCAGTTACGTGGTGACACACAGTGTTACTTCCATACCAACCAGCTaGAGCTTCAGCTCAGACACC +
Preference number: 5 (lower is better)
Translates to: SCKRTRVKCSYVVTHSVTSIPTS*SFSSDT
Trigger: GGTGTCTGAGCTGAAGCTCAAGCTGGTTGGTATGGA...AGTAACACTGTGTGTCACCACGTAACTGCACTTCACCCTCGTCCTTTTGCATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CAA 90 bp TCATGCAAAAGGACGAGGGTGAAGTGCAGTTACGTGGTGACACACAGTGTTACTCGGTCCTTATCCTCATaGGCAACCAGCAGTGTTTCC +
Preference number: 5 (lower is better)
Translates to: SCKRTRVKCSYVVTHSVTRSLSS*ATSSVS
Trigger: GGAAACACTGCTGGTTGCCAATGAGGATAAGGACCG...AGTAACACTGTGTGTCACCACGTAACTGCACTTCACCCTCGTCCTTTTGCATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CAA 90 bp GTCACTATGGTCCAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGCTCCTGTGCAGGCAGTaGGGGTTGAACTTGTTGACA +
Preference number: 5 (lower is better)
Translates to: VTMVQTSAVGTLISAKTLLLCRQ*GLNLLT
Trigger: TGTCAACAAGTTCAACCCCAACTGCCTGCACAGGAG...CAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTGGACCATAGTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS GCA 90 bp CATCGACACACTTATCCCCAGATTCACGTCTCAAGTCTTCTAGACTaGAGGAGAGTTTCTTCTGAGCCCTGCTCTCCAGTGATTTCTGTG +
Preference number: 5 (lower is better)
Translates to: HRHTYPQIHVSSLLD*RRVSSEPCSPVISV
Trigger: CACAGAAATCACTGGAGAGCAGGGCTCAGAAGAAACTCTCCTGCAGTCTAGAAGACTTGAGACGTGAATCTGGGGATAAGTGTGTCGATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS-3UTR CAA 90 bp CAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTGGCTCACAAACTCCAGCTCCTCCACCTaGATTTTGAGGTGCTTAAGC +
Preference number: 5 (lower is better)
Translates to: QTSAVGTLISAKTLWLTNSSSST*ILRCLS
Trigger: GCTTAAGCACCTCAAAATCAAGGTGGAGGAGCTGGA...GTTTGTGAGCCACAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CAA 90 bp GTCACTATGGTCCAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGCTGAAGGCCCCTGAGTaGCCATCACAATCTCCTTTA +
Preference number: 5 (lower is better)
Translates to: VTMVQTSAVGTLISAKTLLKAPE*PSQSPL
Trigger: TAAAGGAGATTGTGATGGCAACTCAGGGGCCTTCAG...CAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTGGACCATAGTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CAA 90 bp CACTACCCCTCCCCCAAATCATTTCACTCAGCCACTGCAGGACACACAGAACAGTCTTCTTGCTTGGCGTaGATAGCTTTCACTGCTAAA +
Preference number: 5 (lower is better)
Translates to: HYPSPKSFHSATAGHTEQSSCLA*IAFTAK
Trigger: TTTAGCAGTGAAAGCTATCAACGCCAAGCAAGAAGA...CTGTTCTGTGTGTCCTGCAGTGGCTGAGTGAAATGATTTGGGGGAGGGGTAGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CAA 90 bp GAAACAAGTGGCCACTCTATAGTAAGGTACAATCAAATTACATTGTCACTATGGTGGGCTACCTCAGCCTaGGTGGCCTTCAGCTCCCAC +
Preference number: 5 (lower is better)
Translates to: ETSGHSIVRYNQITLSLWWATSA*VAFSSH
Trigger: GTGGGAGCTGAAGGCCACCAAGGCTGAGGTAGCCCA...CCATAGTGACAATGTAATTTGATTGTACCTTACTATAGAGTGGCCACTTGTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CAA 90 bp CCTCACCTTCACCTCTGCAGGATCAGCTGCAGTTGGCATATAAAAGTACAAAAGCTGAAGGCCCCTGAGTaGCCATCACAATCTCCTTTA +
Preference number: 5 (lower is better)
Translates to: PHLHLCRISCSWHIKVQKLKAPE*PSQSPL
Trigger: TAAAGGAGATTGTGATGGCAACTCAGGGGCCTTCAG...CTTTTGTACTTTTATATGCCAACTGCAGCTGATCCTGCAGAGGTGAAGGTGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CAA 90 bp CTGACCATCCTTAAAGTGTGTAGTGAGACCAGCCCAAAGACACAATTGTTTTCTGGACCAATCAGGGCGTaGAACTTGGTGGTCAGATGG +
Preference number: 5 (lower is better)
Translates to: LTILKVCSETSPKTQLFSGPIRA*NLVVRW
Trigger: CCATCTGACCACCAAGTTCAACGCCCTGATTGGTCC...AGAAAACAATTGTGTCTTTGGGCTGGTCTCACTACACACTTTAAGGATGGTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CAA 90 bp CCTTCACCTCTGCAGGATCAGCTGCAGTTGGCATATAAAAGTACAAAAGGTAGAGCGGGTGAGGCCATTTaGTCTCGCTTTTCCTGTTCA +
Preference number: 5 (lower is better)
Translates to: PSPLQDQLQLAYKSTKGRAGEAI*SRFSCS
Trigger: TGAACAGGAAAAGCGAGACAAAATGGCCTCACCCGC...TCTACCTTTTGTACTTTTATATGCCAACTGCAGCTGATCCTGCAGAGGTGAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000098134.5
ENSMUST00000208159.2
CDS-3UTR CAA 90 bp CCTTCACCTCTGCAGGATCAGCTGCAGTTGGCATATAAAAGTACAAAAGGTAGATCCAGCTCCTCCACCTaGATTTTGAGGTGCTTAAGC +
Preference number: 5 (lower is better)
Translates to: PSPLQDQLQLAYKSTKGRSSSST*ILRCLS
Trigger: GCTTAAGCACCTCAAAATCAAGGTGGAGGAGCTGGA...TCTACCTTTTGTACTTTTATATGCCAACTGCAGCTGATCCTGCAGAGGTGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CAA 90 bp AAAGTGTGTAGTGAGACCAGCCCAAAGACACAATTGTTTTCTGTAGATCATGCAGCAGTGGGAGGAGATTaGGCAGCTTCTCCATTGGGT +
Preference number: 5 (lower is better)
Translates to: KVCSETSPKTQLFSVDHAAVGGD*AASPLG
Trigger: ACCCAATGGAGAAGCTGCCAAATCTCCTCCCACTGC...TGCATGATCTACAGAAAACAATTGTGTCTTTGGGCTGGTCTCACTACACACTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CAA 90 bp GAAACAAGTGGCCACTCTATAGTAAGGTACAATCAAATTACATTGTCACTATGGCGGGAGACTGAGGGCTaGACTCAGTCCCAGACGAAG +
Preference number: 5 (lower is better)
Translates to: ETSGHSIVRYNQITLSLWRETEG*TQSQTK
Trigger: CTTCGTCTGGGACTGAGTCAAGCCCTCAGTCTCCCG...CCATAGTGACAATGTAATTTGATTGTACCTTACTATAGAGTGGCCACTTGTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CAA 90 bp TGGCCACTCTATAGTAAGGTACAATCAAATTACATTGTCACTATGGTCCAAACACCACTCCCTCGAAGGTaGGGTGCATACTCTGCCAGG +
Preference number: 5 (lower is better)
Translates to: WPLYSKVQSNYIVTMVQTPLPRR*GAYSAR
Trigger: CCTGGCAGAGTATGCACCCAACCTTCGAGGGAGTGG...TGTTTGGACCATAGTGACAATGTAATTTGATTGTACCTTACTATAGAGTGGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CAA 90 bp TACAACCTTTCCCCACCTCCAATCACAGGCTTTCATGAACTAACAGCTCATTGTAACTTCTTAATGCCTTaGGGGCTCCGTTTGCCATCT +
Preference number: 5 (lower is better)
Translates to: YNLSPPPITGFHELTAHCNFLMP*GLRLPS
Trigger: AGATGGCAAACGGAGCCCCAAAGGCATTAAGAAGTT...ACAATGAGCTGTTAGTTCATGAAAGCCTGTGATTGGAGGTGGGGAAAGGTTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS-3UTR CAA 90 bp GTCACTATGGTCCAAACATCCGCTGTTGGCACTTTGATCTCAGCCAAGACTTTGTCTTCTTGCTTGGCGTaGATAGCTTTCACTGCTAAA +
Preference number: 5 (lower is better)
Translates to: VTMVQTSAVGTLISAKTLSSCLA*IAFTAK
Trigger: TTTAGCAGTGAAAGCTATCAACGCCAAGCAAGAAGA...CAAAGTCTTGGCTGAGATCAAAGTGCCAACAGCGGATGTTTGGACCATAGTGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CAA 90 bp ATTCTGACCATCCTTAAAGTGTGTAGTGAGACCAGCCCAAAGACACAATTGTTTGCGGGTGAGGCCATTTaGTCTCGCTTTTCCTGTTCA +
Preference number: 5 (lower is better)
Translates to: ILTILKVCSETSPKTQLFAGEAI*SRFSCS
Trigger: TGAACAGGAAAAGCGAGACAAAATGGCCTCACCCGC...AAACAATTGTGTCTTTGGGCTGGTCTCACTACACACTTTAAGGATGGTCAGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS TCA 90 bp TTGTGGTATTCCATTTTCGGAAGCTTCCCTCTATTTCATCTTCATTaGTGGAGAGGGTTCTTTCTGAAGGCCCCTGAGTTGCCATCACAA +
Preference number: 5 (lower is better)
Translates to: LWYSIFGSFPLFHLH*WRGFFLKAPELPSQ
Trigger: TTGTGATGGCAACTCAGGGGCCTTCAGAAAGAACCCTCTCCATCAATGAAGATGAAATAGAGGGAAGCTTCCGAAAATGGAATACCACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS TCA 90 bp TTCACAGTTAGGTATTGCAGCATTCGCCCATCAACTCTTGATTCATaGAACTGGTCTTTGTATTGGGGTAAGCCAATATCATCAAGCCAC +
Preference number: 5 (lower is better)
Translates to: FTVRYCSIRPSTLDS*NWSLYWGKPISSSH
Trigger: GTGGCTTGATGATATTGGCTTACCCCAATACAAAGACCAGTTTCATGAATCAAGAGTTGATGGGCGAATGCTGCAATACCTAACTGTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS-3UTR CAA 90 bp TGGCCACTCTATAGTAAGGTACAATCAAATTACATTGTCACTATGGTCCAAACATCACATTTCTGTCCCTaGGTGTCCCTGGTCCTAGAA +
Preference number: 5 (lower is better)
Translates to: WPLYSKVQSNYIVTMVQTSHFCP*VSLVLE
Trigger: TTCTAGGACCAGGGACACCAAGGGACAGAAATGTGA...TGTTTGGACCATAGTGACAATGTAATTTGATTGTACCTTACTATAGAGTGGCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS TCA 90 bp CAGCCTACACATCTGTTCCTGCAGCTCACTGATCACATTCAGAACTaGCTCTGCTTTTCTCTGTTTTTCTTCTTGTTCTTTCTGTTCTTT +
Preference number: 5 (lower is better)
Translates to: QPTHLFLQLTDHIQN*LCFSLFFFLFFLFF
Trigger: AAAGAACAGAAAGAACAAGAAGAAAAACAGAGAAAAGCAGAGTCAGTTCTGAATGTGATCAGTGAGCTGCAGGAACAGATGTGTAGGCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000239294.2
CDS-3UTR CAA 90 bp AAAGACACAATTGTTTTCTGTAGATCATGCAAAAGGACGAGGGTGAAGTGCAGTTTCGCCCATCAACTCTaGATTCATGAAACTGGTCTT +
Preference number: 5 (lower is better)
Translates to: KDTIVFCRSCKRTRVKCSFAHQL*IHETGL
Trigger: AAGACCAGTTTCATGAATCAAGAGTTGATGGGCGAA...ACTGCACTTCACCCTCGTCCTTTTGCATGATCTACAGAAAACAATTGTGTCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS-3UTR CAA 90 bp TATAGTAAGGTACAATCAAATTACATTGTCACTATGGTCCAAACATCCGCTGTTAACTTCTTAATGCCTTaGGGGCTCCGTTTGCCATCT +
Preference number: 5 (lower is better)
Translates to: YSKVQSNYIVTMVQTSAVNFLMP*GLRLPS
Trigger: AGATGGCAAACGGAGCCCCAAAGGCATTAAGAAGTT...AACAGCGGATGTTTGGACCATAGTGACAATGTAATTTGATTGTACCTTACTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS GCA 72 bp GGTGTCCCTGGTCCTAGAAAGCCTTGGTCCCGCAGTTaGTCGGAGCCCACCTCGTCGAAACTCTGCCATCCC +
Preference number: 6 (lower is better)
Translates to: GVPGPRKPWSRS*SEPTSSKLCHP
Trigger: GGGATGGCAGAGTTTCGACGAGGTGGGCTCCGAGCAACTGCGGGACCAAGGCTTTCTAGGACCAGGGACACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CAA 72 bp ATAATGAGGCCGCCATGGACGCCACTCCCTCGAAGGTaGGGTGCATACTCTGCCAGGTCCACGGATCGCAGC +
Preference number: 6 (lower is better)
Translates to: IMRPPWTPLPRR*GAYSARSTDRS
Trigger: GCTGCGATCCGTGGACCTGGCAGAGTATGCACCCAACCTTCGAGGGAGTGGCGTCCATGGCGGCCTCATTAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS TCA 72 bp CCCAGCCTCCTTCTGTGTCTCCTAATACGGGAGCACTaGCACTCCAGCCGCGATTCAGCTTTGGCTGGCTGC +
Preference number: 6 (lower is better)
Translates to: PSLLLCLLIREH*HSSRDSALAGC
Trigger: GCAGCCAGCCAAAGCTGAATCGCGGCTGGAGTGTCAGTGCTCCCGTATTAGGAGACACAGAAGGAGGCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040056.15
CDS CCA 72 bp CTTGGTGGTCAGATGGCGCCTGAGGAGCGTCTTCTGTaGGGGGATGTTAAGAAGCATAGCCAGGGTGTCCCC +
Preference number: 6 (lower is better)
Translates to: LGGQMAPEERLL*GDVKKHSQGVP
Trigger: GGGGACACCCTGGCTATGCTTCTTAACATCCCCCCACAGAAGACGCTCCTCAGGCGCCATCTGACCACCAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
ENSMUST00000208159.2
CDS CAA 72 bp GTGGGGTATTTCTGCTCCGCTAGGAAAGAGCTGTCCTaGGGCTCTCCCACTGGGGACAGCTGGTTCCCATCG +
Preference number: 6 (lower is better)
Translates to: VGYFCSARKELS*GSPTGDSWFPS
Trigger: CGATGGGAACCAGCTGTCCCCAGTGGGAGAGCCCAAGGACAGCTCTTTCCTAGCGGAGCAGAAATACCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CAA 90 bp GCATCTTTTAGGGCCACCTGTTCTTGCAGCTGGGCTACCTCAGCCTaGGTGGCCTTCAGCTCCCACTCATACTGGTTCCGCTCGTTCTCC +
Preference number: 6 (lower is better)
Translates to: ASFRATCSCSWATSA*VAFSSHSYWFRSFS
Trigger: GGAGAACGAGCGGAACCAGTATGAGTGGGAGCTGAAGGCCACCAAGGCTGAGGTAGCCCAGCTGCAAGAACAGGTGGCCCTAAAAGATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
ENSMUST00000239294.2
CDS GCA 72 bp TTCTTGATCTCGCTCTGCATGGTCGCTGTGGAGAGCTaGACTCCGGGAGAGCTGGCTGTGGAGACGCTCAAT +
Preference number: 6 (lower is better)
Translates to: FLISLCMVAVES*TPGELAVETLN
Trigger: ATTGAGCGTCTCCACAGCCAGCTCTCCCGGAGTGCAGCTCTCCACAGCGACCATGCAGAGCGAGATCAAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CCA 72 bp TCGCTGTGGAGAGCTGCACTCCGGGAGAGCTGGCTGTaGAGACGCTCAATTTCTGCATCTTTTAGGGCCACC +
Preference number: 6 (lower is better)
Translates to: SLWRAALRESWL*RRSISASFRAT
Trigger: GGTGGCCCTAAAAGATGCAGAAATTGAGCGTCTCCACAGCCAGCTCTCCCGGAGTGCAGCTCTCCACAGCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CCA 72 bp TGGGGTATTTCTGCTCCGCTAGGAAAGAGCTGTCCTTaGGCTCTCCCACTGGGGACAGCTGGTTCCCATCGA +
Preference number: 6 (lower is better)
Translates to: WGISAPLGKSCP*ALPLGTAGSHR
Trigger: TCGATGGGAACCAGCTGTCCCCAGTGGGAGAGCCCAAGGACAGCTCTTTCCTAGCGGAGCAGAAATACCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CCA 72 bp TTTCTGTCCCTTGGTGTCCCTGGTCCTAGAAAGCCTTaGTCCCGCAGTTGCTCGGAGCCCACCTCGTCGAAA +
Preference number: 6 (lower is better)
Translates to: FLSLGVPGPRKP*SRSCSEPTSSK
Trigger: TTTCGACGAGGTGGGCTCCGAGCAACTGCGGGACCAAGGCTTTCTAGGACCAGGGACACCAAGGGACAGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CCA 72 bp CCAGTAAAGCGAGGCTCCAGGATAATGAGGCCGCCATaGACGCCACTCCCTCGAAGGTTGGGTGCATACTCT +
Preference number: 6 (lower is better)
Translates to: PVKRGSRIMRPP*TPLPRRLGAYS
Trigger: AGAGTATGCACCCAACCTTCGAGGGAGTGGCGTCCATGGCGGCCTCATTATCCTGGAGCCTCGCTTTACTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CCA 72 bp TCCTGGCTCAGTAGAGTCGTGAGGCGGTGGATGTCTTaGGAGAGGAGCCCTATCTGTGTCACAGTGCCTTCG +
Preference number: 6 (lower is better)
Translates to: SWLSRVVRRWMS*ERSPICVTVPS
Trigger: CGAAGGCACTGTGACACAGATAGGGCTCCTCTCCCAAGACATCCACCGCCTCACGACTCTACTGAGCCAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS CAA 72 bp CGCTTTTCCTGTTCAGCCTCAGGACCAATCAGGGCGTaGAACTTGGTGGTCAGATGGCGCCTGAGGAGCGTC +
Preference number: 6 (lower is better)
Translates to: RFSCSASGPIRA*NLVVRWRLRSV
Trigger: GACGCTCCTCAGGCGCCATCTGACCACCAAGTTCAACGCCCTGATTGGTCCTGAGGCTGAACAGGAAAAGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
ENSMUST00000208159.2
CDS CAA 90 bp CAGATGAGACTATATCTTCCCAGCCTCCTTCTGTGTCTCTCAGCTTaGGCTGGCTGCTCCCTGAAGAGTCAGGCTGGAGGGAGGCAGTGG +
Preference number: 6 (lower is better)
Translates to: QMRLYLPSLLLCLSA*AGCSLKSQAGGRQW
Trigger: CCACTGCCTCCCTCCAGCCTGACTCTTCAGGGAGCAGCCAGCCAAAGCTGAGAGACACAGAAGGAGGCTGGGAAGATATAGTCTCATCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS TCA 72 bp GGTCCAAACCATCTAGTTCATGGTTGTCAAGGGGACTaGGGCCCCGGTAGACTCCGTAGACCCTGTGGCTGT +
Preference number: 6 (lower is better)
Translates to: GPNHLVHGCQGD*GPGRLRRPCGC
Trigger: ACAGCCACAGGGTCTACGGAGTCTACCGGGGCCTCAGTCCCCTTGACAACCATGAACTAGATGGTTTGGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
ENSMUST00000208159.2
CDS CCA 72 bp ACCTCAGCCTTGGTGGCCTTCAGCTCCCACTCATACTaGTTCCGCTCGTTCTCCAGCTCCTCCACCTTGATT +
Preference number: 6 (lower is better)
Translates to: TSALVAFSSHSY*FRSFSSSSTLI
Trigger: AATCAAGGTGGAGGAGCTGGAGAACGAGCGGAACCAGTATGAGTGGGAGCTGAAGGCCACCAAGGCTGAGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
ENSMUST00000239294.2
CDS CCA 72 bp GCATGGTCGCTGTGGAGAGCTGCACTCCGGGAGAGCTaGCTGTGGAGACGCTCAATTTCTGCATCTTTTAGG +
Preference number: 6 (lower is better)
Translates to: AWSLWRAALRES*LWRRSISASFR
Trigger: CCTAAAAGATGCAGAAATTGAGCGTCTCCACAGCCAGCTCTCCCGGAGTGCAGCTCTCCACAGCGACCATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CCA 72 bp GGGAGGCAGTGGGAGGAGATTTGGCAGCTTCTCCATTaGGTGTGGCTCCTGAAAGCTTCCCAGGTAATGTGG +
Preference number: 6 (lower is better)
Translates to: GRQWEEIWQLLH*VWLLKASQVMW
Trigger: CCACATTACCTGGGAAGCTTTCAGGAGCCACACCCAATGGAGAAGCTGCCAAATCTCCTCCCACTGCCTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CCA 72 bp AGGAGTTGGTCCTGGCTCAGTAGAGTCGTGAGGCGGTaGATGTCTTGGGAGAGGAGCCCTATCTGTGTCACA +
Preference number: 6 (lower is better)
Translates to: RSWSWLSRVVRR*MSWERSPICVT
Trigger: TGTGACACAGATAGGGCTCCTCTCCCAAGACATCCACCGCCTCACGACTCTACTGAGCCAGGACCAACTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS CAA 72 bp CATACGCGTTCTGTGCTCCACTGGGCAAAGGGGGCATaGGCATCACATTTCTGTCCCTTGGTGTCCCTGGTC +
Preference number: 6 (lower is better)
Translates to: HTRSVLHWAKGA*ASHFCPLVSLV
Trigger: GACCAGGGACACCAAGGGACAGAAATGTGATGCCAATGCCCCCTTTGCCCAGTGGAGCACAGAACGCGTATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CAA 72 bp TCCTGTTCAGCCTCAGGACCAATCAGGGCGTTGAACTaGGTGGTCAGATGGCGCCTGAGGAGCGTCTTCTGT +
Preference number: 6 (lower is better)
Translates to: SCSASGPIRALN*VVRWRLRSVFC
Trigger: ACAGAAGACGCTCCTCAGGCGCCATCTGACCACCAAGTTCAACGCCCTGATTGGTCCTGAGGCTGAACAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
ENSMUST00000208159.2
CDS CAA 90 bp GGCAACCAGCAGTGTTTCCATCCCCATTTTCAGACGGTGGATTTCTaGATCTCGCTCTGCATGGTCGCTGTGGAGAGCTGCACTCCGGGA +
Preference number: 6 (lower is better)
Translates to: GNQQCFHPHFQTVDF*ISLCMVAVESCTPG
Trigger: TCCCGGAGTGCAGCTCTCCACAGCGACCATGCAGAGCGAGATCAAGAAATCCACCGTCTGAAAATGGGGATGGAAACACTGCTGGTTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CAA 90 bp CTTTGGGGCTCCGTTTGCCATCTGGTGTCACGGGAGACTGAGGGCTaGACTCAGTCCCAGACGAAGCAGATGAGACTATATCTTCCCAGC +
Preference number: 6 (lower is better)
Translates to: LWGSVCHLVSRETEG*TQSQTKQMRLYLPS
Trigger: GCTGGGAAGATATAGTCTCATCTGCTTCGTCTGGGACTGAGTCAAGCCCTCAGTCTCCCGTGACACCAGATGGCAAACGGAGCCCCAAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS GCA 72 bp GCTCCTGAAAGCTTCCCAGGTAATGTGGGGTATTTCTaGTCCGCTAGGAAAGAGCTGTCCTTGGGCTCTCCC +
Preference number: 6 (lower is better)
Translates to: APESFPGNVGYF*SARKELSLGSP
Trigger: GGGAGAGCCCAAGGACAGCTCTTTCCTAGCGGAGCAGAAATACCCCACATTACCTGGGAAGCTTTCAGGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CCA 72 bp GCTGTCCTCAAACCACTCCTTTATGTAGGTAGCTGTTaGGCCAGGGACCTGGCTCAGGAGGGCTTCTCTTTC +
Preference number: 6 (lower is better)
Translates to: AVLKPLLYVGSC*ARDLAQEGFSF
Trigger: GAAAGAGAAGCCCTCCTGAGCCAGGTCCCTGGCCCAACAGCTACCTACATAAAGGAGTGGTTTGAGGACAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
ENSMUST00000208956.2
CDS CCA 72 bp CAGGGACAGCCAGGCGGGTCATTCAGGAGTTGGTCCTaGCTCAGTAGAGTCTGGTCCAAACCATCTAGTTCA +
Preference number: 6 (lower is better)
Translates to: QGQPGGSFRSWS*LSRVWSKPSSS
Trigger: TGAACTAGATGGTTTGGACCAGACTCTACTGAGCCAGGACCAACTCCTGAATGACCCGCCTGGCTGTCCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000208159.2
CDS CAA 72 bp AGGTCCACGGATCGCAGCCACTCCATTACCCTGTGGTaGGACCACTGCACAACTTCGGAAGGGGAAAGGTTA +
Preference number: 6 (lower is better)
Translates to: RSTDRSHSITLW*DHCTTSEGERL
Trigger: TAACCTTTCCCCTTCCGAAGTTGTGCAGTGGTCCAACCACAGGGTAATGGAGTGGCTGCGATCCGTGGACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CAA 90 bp ATTTTGTCTCGCTTTTCCTGTTCAGCCTCAGGACCAATCAGGGCGTaGAACTTGGTGGTCAGATGGCGCCTGAGGAGCGTCTTCTGTGGG +
Preference number: 6 (lower is better)
Translates to: ILSRFSCSASGPIRA*NLVVRWRLRSVFCG
Trigger: CCCACAGAAGACGCTCCTCAGGCGCCATCTGACCACCAAGTTCAACGCCCTGATTGGTCCTGAGGCTGAACAGGAAAAGCGAGACAAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
ENSMUST00000208159.2
CDS GCA 72 bp TCGGAGCCCACCTCGTCGAAACTCTGCCATCCCCGGTaGATCAGTATTGAAGTTTCCAGACTGAGTTCTTCG +
Preference number: 6 (lower is better)
Translates to: SEPTSSKLCHPR*ISIEVSRLSSS
Trigger: CGAAGAACTCAGTCTGGAAACTTCAATACTGATGCACCGGGGATGGCAGAGTTTCGACGAGGTGGGCTCCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS GCA 72 bp GGCCGAAATCCTCCATCCATGTACATACGCGTTCTGTaGTCCACTGGGCAAAGGGGGCATTGGCATCACATT +
Preference number: 6 (lower is better)
Translates to: GRNPPSMYIRVL*STGQRGHWHHI
Trigger: AATGTGATGCCAATGCCCCCTTTGCCCAGTGGAGCACAGAACGCGTATGTACATGGATGGAGGATTTCGGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS GCA 72 bp GGATGTCTTGGGAGAGGAGCCCTATCTGTGTCACAGTaGCTTCGGAAGGTGCCATCTGGTCCAAACCATCTA +
Preference number: 6 (lower is better)
Translates to: GCLGRGALSVSQ*LRKVPSGPNHL
Trigger: TAGATGGTTTGGACCAGATGGCACCTTCCGAAGGCACTGTGACACAGATAGGGCTCCTCTCCCAAGACATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS GCA 72 bp CGCTCGTTCTCCAGCTCCTCCACCTTGATTTTGAGGTaGTTAAGCTCTTGCAGTAACTCAGGTGACCCCTCC +
Preference number: 6 (lower is better)
Translates to: RSFSSSSTLILR*LSSCSNSGDPS
Trigger: GGAGGGGTCACCTGAGTTACTGCAAGAGCTTAAGCACCTCAAAATCAAGGTGGAGGAGCTGGAGAACGAGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000239294.2
CDS CCA 72 bp TCCTCCATCCATGTACATACGCGTTCTGTGCTCCACTaGGCAAAGGGGGCATTGGCATCACATTTCTGTCCC +
Preference number: 6 (lower is better)
Translates to: SSIHVHTRSVLH*AKGALASHFCP
Trigger: GGGACAGAAATGTGATGCCAATGCCCCCTTTGCCCAGTGGAGCACAGAACGCGTATGTACATGGATGGAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS GCA 72 bp CCTGGGGTGGGAGAGCTGCATCGTGGTGATATCTCTTaGTTCGGGACTTCCTCTGGGCTTTTATTTGTGGTA +
Preference number: 6 (lower is better)
Translates to: PGVGELHRGDIS*FGTSSGLLFVV
Trigger: TACCACAAATAAAAGCCCAGAGGAAGTCCCGAAGCAAGAGATATCACCACGATGCAGCTCTCCCACCCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CCA 72 bp AAGCCAATATCATCAAGCCACCGTGTCACCCAAATGTaGTCCAGCAGCGCAGACGTTTCTTCTTGCTTGGCG +
Preference number: 6 (lower is better)
Translates to: KPISSSHRVTQM*SSSADVSSCLA
Trigger: CGCCAAGCAAGAAGAAACGTCTGCGCTGCTGGACCACATTTGGGTGACACGGTGGCTTGATGATATTGGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CAA 72 bp CAGTGTTTCCATCCCCATTTTCAGACGGTGGATTTCTaGATCTCGCTCTGCATGGTCGCTGTGGAGAGCTGC +
Preference number: 6 (lower is better)
Translates to: QCFHPHFQTVDF*ISLCMVAVESC
Trigger: GCAGCTCTCCACAGCGACCATGCAGAGCGAGATCAAGAAATCCACCGTCTGAAAATGGGGATGGAAACACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CAA 72 bp TCCGTTTGCCATCTGGTGTCACGGGAGACTGAGGGCTaGACTCAGTCCCAGACGAAGCAGATGAGACTATAT +
Preference number: 6 (lower is better)
Translates to: SVCHLVSRETEG*TQSQTKQMRLY
Trigger: ATATAGTCTCATCTGCTTCGTCTGGGACTGAGTCAAGCCCTCAGTCTCCCGTGACACCAGATGGCAAACGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CAA 72 bp GTTCTTCGGATCTTTCCCCAGAACTTCTTAATGCCTTaGGGGCTCCGTTTGCCATCTGGTGTCACGGGAGAC +
Preference number: 6 (lower is better)
Translates to: VLRIFPQNFLMP*GLRLPSGVTGD
Trigger: GTCTCCCGTGACACCAGATGGCAAACGGAGCCCCAAAGGCATTAAGAAGTTCTGGGGAAAGATCCGAAGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CAA 90 bp ACCCAAATGTGGTCCAGCAGCGCAGACGTTTCTTCTTGCTTGGCGTaGATAGCTTTCACTGCTAAAACCAGCTTCTTCCTGTGGAGGGGG +
Preference number: 6 (lower is better)
Translates to: TQMWSSSADVSSCLA*IAFTAKTSFFLWRG
Trigger: CCCCCTCCACAGGAAGAAGCTGGTTTTAGCAGTGAAAGCTATCAACGCCAAGCAAGAAGAAACGTCTGCGCTGCTGGACCACATTTGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CAA 90 bp CGTGTCACCCAAATGTGGTCCAGCAGCGCAGACGTTTCTTCTTGCTaGGCGTTGATAGCTTTCACTGCTAAAACCAGCTTCTTCCTGTGG +
Preference number: 6 (lower is better)
Translates to: RVTQMWSSSADVSSC*ALIAFTAKTSFFLW
Trigger: CCACAGGAAGAAGCTGGTTTTAGCAGTGAAAGCTATCAACGCCAAGCAAGAAGAAACGTCTGCGCTGCTGGACCACATTTGGGTGACACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS TCA 72 bp CTCGTCGAAACTCTGCCATCCCCGGTGCATCAGTATTaGAGTTTCCAGACTGAGTTCTTCGGATCTTTCCCC +
Preference number: 6 (lower is better)
Translates to: LVETLPSPVHQY*SFQTEFFGSFP
Trigger: GGGGAAAGATCCGAAGAACTCAGTCTGGAAACTTCAATACTGATGCACCGGGGATGGCAGAGTTTCGACGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS TCA 72 bp CCAGATGTCACCCACTGTCTGGCAAAGATCACATACTaGCCCAGGCCGAAATCCTCCATCCATGTACATACG +
Preference number: 6 (lower is better)
Translates to: PDVTHCLAKITY*PRPKSSIHVHT
Trigger: CGTATGTACATGGATGGAGGATTTCGGCCTGGGTCAGTATGTGATCTTTGCCAGACAGTGGGTGACATCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS GCA 72 bp CTGTGGATGTCCAGCTGCAGCCTACACATCTGTTCCTaGAGCTCACTGATCACATTCAGAACTGACTCTGCT +
Preference number: 6 (lower is better)
Translates to: LWMSSCSLHICS*SSLITFRTDSA
Trigger: AGCAGAGTCAGTTCTGAATGTGATCAGTGAGCTGCAGGAACAGATGTGTAGGCTGCAGCTGGACATCCACAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000239294.2
CDS CCA 72 bp CCTATCTGTGTCACAGTGCCTTCGGAAGGTGCCATCTaGTCCAAACCATCTAGTTCATGGTTGTCAAGGGGA +
Preference number: 6 (lower is better)
Translates to: PICVTVPSEGAI*SKPSSSWLSRG
Trigger: TCCCCTTGACAACCATGAACTAGATGGTTTGGACCAGATGGCACCTTCCGAAGGCACTGTGACACAGATAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098134.5
CDS CCA 72 bp GGGTCATTCAGGAGTTGGTCCTGGCTCAGTAGAGTCTaGTCCAAACCATCTAGTTCATGGTTGTCAAGGGGA +
Preference number: 6 (lower is better)
Translates to: GSFRSWSWLSRV*SKPSSSWLSRG
Trigger: TCCCCTTGACAACCATGAACTAGATGGTTTGGACCAGACTCTACTGAGCCAGGACCAACTCCTGAATGACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208159.2
CDS CAA 90 bp AGCTCCCACTCATACTGGTTCCGCTCGTTCTCCAGCTCCTCCACCTaGATTTTGAGGTGCTTAAGCTCTTGCAGTAACTCCTCTGCTTTT +
Preference number: 6 (lower is better)
Translates to: SSHSYWFRSFSSSST*ILRCLSSCSNSSAF
Trigger: AAAAGCAGAGGAGTTACTGCAAGAGCTTAAGCACCTCAAAATCAAGGTGGAGGAGCTGGAGAACGAGCGGAACCAGTATGAGTGGGAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS GCA 72 bp AGACAGCCCAGGCTCACAGGTACCATCACTAAAATCTaGAGCTGTTTTAGTGCCTGCAATGATCCCGTCCAT +
Preference number: 6 (lower is better)
Translates to: RQPRLTGTITKI*SCFSACNDPVH
Trigger: ATGGACGGGATCATTGCAGGCACTAAAACAGCTGCAGATTTTAGTGATGGTACCTGTGAGCCTGGGCTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
ENSMUST00000208956.2
CDS GCA 72 bp CGCTCGTTCTCCAGCTCCTCCACCTTGATTTTGAGGTaGTTAAGCTCTTGCAGTAACTCCTCTGCTTTTCTC +
Preference number: 6 (lower is better)
Translates to: RSFSSSSTLILR*LSSCSNSSAFL
Trigger: GAGAAAAGCAGAGGAGTTACTGCAAGAGCTTAAGCACCTCAAAATCAAGGTGGAGGAGCTGGAGAACGAGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS GCA 72 bp ACCCAAATGTGGTCCAGCAGCGCAGACGTTTCTTCTTaGTTGGCGTTGATAGCTTTCACTGCTAAAACCAGC +
Preference number: 6 (lower is better)
Translates to: TQMWSSSADVSS*LALIAFTAKTS
Trigger: GCTGGTTTTAGCAGTGAAAGCTATCAACGCCAAGCAAGAAGAAACGTCTGCGCTGCTGGACCACATTTGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CCA 72 bp CTGTCAGTAGTGTATGTCCAGATGTCACCCACTGTCTaGCAAAGATCACATACTGACCCAGGCCGAAATCCT +
Preference number: 6 (lower is better)
Translates to: LSVVYVQMSPTV*QRSHTDPGRNP
Trigger: AGGATTTCGGCCTGGGTCAGTATGTGATCTTTGCCAGACAGTGGGTGACATCTGGACATACACTACTGACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CAA 72 bp TCATACTGGTTCCGCTCGTTCTCCAGCTCCTCCACCTaGATTTTGAGGTGCTTAAGCTCTTGCAGTAACTCC +
Preference number: 6 (lower is better)
Translates to: SYWFRSFSSSST*ILRCLSSCSNS
Trigger: GGAGTTACTGCAAGAGCTTAAGCACCTCAAAATCAAGGTGGAGGAGCTGGAGAACGAGCGGAACCAGTATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CAA 72 bp CAAATGTGGTCCAGCAGCGCAGACGTTTCTTCTTGCTaGGCGTTGATAGCTTTCACTGCTAAAACCAGCTTC +
Preference number: 6 (lower is better)
Translates to: QMWSSSADVSSC*ALIAFTAKTSF
Trigger: GAAGCTGGTTTTAGCAGTGAAAGCTATCAACGCCAAGCAAGAAGAAACGTCTGCGCTGCTGGACCACATTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CAA 72 bp TCATACTGGTTCCGCTCGTTCTCCAGCTCCTCCACCTaGATTTTGAGGTGCTTAAGCTCTTGCAGTAACTCA +
Preference number: 6 (lower is better)
Translates to: SYWFRSFSSSST*ILRCLSSCSNS
Trigger: TGAGTTACTGCAAGAGCTTAAGCACCTCAAAATCAAGGTGGAGGAGCTGGAGAACGAGCGGAACCAGTATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000239294.2
CDS TCA 72 bp GCCATCCCCGGTGCATCAGTATTGAAGTTTCCAGACTaGGTTCTTCGGATCTTTCCCCAGAACTTCTTAATG +
Preference number: 6 (lower is better)
Translates to: AIPGASVLKFPD*VLRIFPQNFLM
Trigger: CATTAAGAAGTTCTGGGGAAAGATCCGAAGAACTCAGTCTGGAAACTTCAATACTGATGCACCGGGGATGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS TCA 72 bp TCCATTTTCGGAAGCTTCCCTCTATTTCATCTTCATTaGTGGAGAGGGTTCTTTCTGAAGGCCCCTGAGTTG +
Preference number: 6 (lower is better)
Translates to: SIFGSFPLFHLH*WRGFFLKAPEL
Trigger: CAACTCAGGGGCCTTCAGAAAGAACCCTCTCCATCAATGAAGATGAAATAGAGGGAAGCTTCCGAAAATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CAA 72 bp TCACAGTTAGGTATTGCAGCATTCGCCCATCAACTCTaGATTCATGAAACTGGTCTTTGTATTGGGGTAAGC +
Preference number: 6 (lower is better)
Translates to: SQLGIAAFAHQL*IHETGLCIGVS
Trigger: GCTTACCCCAATACAAAGACCAGTTTCATGAATCAAGAGTTGATGGGCGAATGCTGCAATACCTAACTGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS TCA 72 bp AGGTATTGCAGCATTCGCCCATCAACTCTTGATTCATaGAACTGGTCTTTGTATTGGGGTAAGCCAATATCA +
Preference number: 6 (lower is better)
Translates to: RYCSIRPSTLDS*NWSLYWGKPIS
Trigger: TGATATTGGCTTACCCCAATACAAAGACCAGTTTCATGAATCAAGAGTTGATGGGCGAATGCTGCAATACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CAA 72 bp ATATCTCTTGCTTCGGGACTTCCTCTGGGCTTTTATTaGTGGTATTCCATTTTCGGAAGCTTCCCTCTATTT +
Preference number: 6 (lower is better)
Translates to: ISLASGLPLGFY*WYSIFGSFPLF
Trigger: AAATAGAGGGAAGCTTCCGAAAATGGAATACCACAAATAAAAGCCCAGAGGAAGTCCCGAAGCAAGAGATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5
CDS CAA 90 bp GTAGATCATTCACAGTTAGGTATTGCAGCATTCGCCCATCAACTCTaGATTCATGAAACTGGTCTTTGTATTGGGGTAAGCCAATATCAT +
Preference number: 6 (lower is better)
Translates to: VDHSQLGIAAFAHQL*IHETGLCIGVSQYH
Trigger: ATGATATTGGCTTACCCCAATACAAAGACCAGTTTCATGAATCAAGAGTTGATGGGCGAATGCTGCAATACCTAACTGTGAATGATCTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000040056.15
ENSMUST00000098134.5