RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PPFIA4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026458

Ensembl transcript IDs: ENSMUST00000168515.8, ENSMUST00000186730.7, ENSMUST00000189361.2

Found 467 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAAGGGTCAGGGCCGGCTGAGCCTGTGAAACCAGGACACCCGCCCTaGGGGCCGTGGCTAGTCCCGGAAGGCGGAGAGCATGTGTCCGTA +
Preference number: 1 (lower is better)
Translates to: EGSGPAEPVKPGHPP*GPWLVPEGGEHVSV
Trigger: TACGGACACATGCTCTCCGCCTTCCGGGACTAGCCACGGCCCCCAGGGCGGGTGTCCTGGTTTCACAGGCTCAGCCGGCCCTGACCCTTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
3UTR TCA 90 bp GGAGCCAAGGGAGAAAGGGAACGAGCAGGAAGGGTCAGGGCCGGCTaGGCCTGTGAAACCAGGACACCCGCCCTGGGGGCCGTGGCTAGT +
Preference number: 1 (lower is better)
Translates to: GAKGERERAGRVRAG*ACETRTPALGAVAS
Trigger: ACTAGCCACGGCCCCCAGGGCGGGTGTCCTGGTTTCACAGGCTCAGCCGGCCCTGACCCTTCCTGCTCGTTCCCTTTCTCCCTTGGCTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
3UTR CCA 90 bp GGGCCGGCTGAGCCTGTGAAACCAGGACACCCGCCCTGGGGGCCGTaGCTAGTCCCGGAAGGCGGAGAGCATGTGTCCGTAGAGATAGTG +
Preference number: 1 (lower is better)
Translates to: GPAEPVKPGHPPWGP*LVPEGGEHVSVEIV
Trigger: CACTATCTCTACGGACACATGCTCTCCGCCTTCCGGGACTAGCCACGGCCCCCAGGGCGGGTGTCCTGGTTTCACAGGCTCAGCCGGCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
3UTR GCA 90 bp GTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTaGCCGACAGACACTCACGGGAGACCTTGGTCACATCCTCCAGAG +
Preference number: 1 (lower is better)
Translates to: VLPSLLQNLKHLQPG*PTDTHGRPWSHPPE
Trigger: CTCTGGAGGATGTGACCAAGGTCTCCCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR GCA 90 bp AATGGCAAAGCAGCTACTCCAGTCACCTCCAGGATGGCACTGTACTaGCGGTCACAAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCAT +
Preference number: 1 (lower is better)
Translates to: NGKAATPVTSRMALY*RSQAQPRHFPVLFH
Trigger: ATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTTGTGACCGGCAGTACAGTGCCATCCTGGAGGTGACTGGAGTAGCTGCTTTGCCATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR CCA 90 bp GATGAGCCCATAGTCCAGACCAAAACAGATCCGGAAGAGGGAAGGTaGCCACAGGTGCTGTCCTTCCCTCCCTCCTACAGAATCTCAAAC +
Preference number: 1 (lower is better)
Translates to: DEPIVQTKTDPEEGR*PQVLSFPPSYRISN
Trigger: GTTTGAGATTCTGTAGGAGGGAGGGAAGGACAGCACCTGTGGCCACCTTCCCTCTTCCGGATCTGTTTTGGTCTGGACTATGGGCTCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR CCA 90 bp GCTTGGGCACAGAGTTTCTACCTTAGTCTTCCTCAGCTCCACTCCTaGCTTTGTCCTGGAAGAGGGTTCGGGGTATTCTACACCCCTCGT +
Preference number: 1 (lower is better)
Translates to: AWAQSFYLSLPQLHS*LCPGRGFGVFYTPR
Trigger: ACGAGGGGTGTAGAATACCCCGAACCCTCTTCCAGGACAAAGCCAGGAGTGGAGCTGAGGAAGACTAAGGTAGAAACTCTGTGCCCAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR CCA 90 bp CTCACCCTGGGCCCAAAGCTCTGGGGTCCATTCCTCCCACACATTTaGGGTTCTGTGTCAGCTTGGGCACAGAGTTTCTACCTTAGTCTT +
Preference number: 1 (lower is better)
Translates to: LTLGPKLWGPFLPHI*GSVSAWAQSFYLSL
Trigger: AAGACTAAGGTAGAAACTCTGTGCCCAAGCTGACACAGAACCCCAAATGTGTGGGAGGAATGGACCCCAGAGCTTTGGGCCCAGGGTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR TCA 90 bp CTCACTCACACACTCACTCCTGAAAGCACTGAGCCAATACAGTACTaGGAAGGGACCTGGTTTGACACAGGAGGCTGGCAGGGAGAGCTT +
Preference number: 1 (lower is better)
Translates to: LTHTLTPESTEPIQY*EGTWFDTGGWQGEL
Trigger: AAGCTCTCCCTGCCAGCCTCCTGTGTCAAACCAGGTCCCTTCTCAGTACTGTATTGGCTCAGTGCTTTCAGGAGTGAGTGTGTGAGTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR TCA 90 bp TCCTCTTCCATTTCGGGTTCTATCACCCACCCTGATACTAGGCCCTaGGCTTTCCCAAGGTTAAGGAATTGGTCCAGAAGAGAGGGGCAA +
Preference number: 1 (lower is better)
Translates to: SSSISGSITHPDTRP*AFPRLRNWSRREGQ
Trigger: TTGCCCCTCTCTTCTGGACCAATTCCTTAACCTTGGGAAAGCTCAGGGCCTAGTATCAGGGTGGGTGATAGAACCCGAAATGGAAGAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR-3UTR GCA 90 bp GCCCTCACCCTGGGCCCAAAGCTCTGGGGTCCATTCCTCCCACACATTTGGGGTGAAGGTGGCCACAGGTaGTGTCCTTCCCTCCCTCCT +
Preference number: 2 (lower is better)
Translates to: ALTLGPKLWGPFLPHIWGEGGHR*CPSLPP
Trigger: AGGAGGGAGGGAAGGACAGCACCTGTGGCCACCTTC...ACCCCAAATGTGTGGGAGGAATGGACCCCAGAGCTTTGGGCCCAGGGTGAGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR-3UTR GCA 90 bp CTAGGCAAGGGGCTGAAGAGTTCCCCTTGCCCTCACCCTGGGCCCAAAGCTCTGGAAGGTGGCCACAGGTaGTGTCCTTCCCTCCCTCCT +
Preference number: 2 (lower is better)
Translates to: LGKGLKSSPCPHPGPKALEGGHR*CPSLPP
Trigger: AGGAGGGAGGGAAGGACAGCACCTGTGGCCACCTTC...CAGAGCTTTGGGCCCAGGGTGAGGGCAAGGGGAACTCTTCAGCCCCTTGCCTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR-3UTR CCA 90 bp CTAGGCAAGGGGCTGAAGAGTTCCCCTTGCCCTCACCCTGGGCCCAAAGCTCTGCCGGAAGAGGGAAGGTaGCCACAGGTGCTGTCCTTC +
Preference number: 2 (lower is better)
Translates to: LGKGLKSSPCPHPGPKALPEEGR*PQVLSF
Trigger: GAAGGACAGCACCTGTGGCCACCTTCCCTCTTCCGG...CAGAGCTTTGGGCCCAGGGTGAGGGCAAGGGGAACTCTTCAGCCCCTTGCCTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR-3UTR CCA 90 bp GAAACAGCGGGCTTGAGGACGGGTAGTTGCCTGCCCCAGCCCATGTTAGCTCATCCCTTGCCCTCACCCTaGGCCCAAAGCTCTGGGGTC +
Preference number: 2 (lower is better)
Translates to: ETAGLRTGSCLPQPMLAHPLPSP*AQSSGV
Trigger: GACCCCAGAGCTTTGGGCCCAGGGTGAGGGCAAGGG...ATGAGCTAACATGGGCTGGGGCAGGCAACTACCCGTCCTCAAGCCCGCTGTTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR-3UTR CCA 90 bp GAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCCACCGTGCTGCCAGACCGCCCTGGGGGCCGTaGCTAGTCCCGGAAGGCGGA +
Preference number: 2 (lower is better)
Translates to: EGQLIFLINLPCPHRAARPPWGP*LVPEGG
Trigger: TCCGCCTTCCGGGACTAGCCACGGCCCCCAGGGCGG...TCTGGCAGCACGGTGGGGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
3UTR-3UTR CCA 90 bp GCATCCTTTTCAGACAGGGAGTTCTGGCTCATTTCTCCACCTGTTAGCTTGGCGCCAGGACACCCGCCCTaGGGGCCGTGGCTAGTCCCG +
Preference number: 2 (lower is better)
Translates to: ASFSDREFWLISPPVSLAPGHPP*GPWLVP
Trigger: CGGGACTAGCCACGGCCCCCAGGGCGGGTGTCCTGG...CGCCAAGCTAACAGGTGGAGAAATGAGCCAGAACTCCCTGTCTGAAAAGGATGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
3UTR-3UTR CCA 90 bp TCTGGTAGGGAGACAGAAACAGCGGGCTTGAGGACGGGTAGTTGCCTGCCCCAGCCGGAAGAGGGAAGGTaGCCACAGGTGCTGTCCTTC +
Preference number: 2 (lower is better)
Translates to: SGRETETAGLRTGSCLPQPEEGR*PQVLSF
Trigger: GAAGGACAGCACCTGTGGCCACCTTCCCTCTTCCGG...CTGGGGCAGGCAACTACCCGTCCTCAAGCCCGCTGTTTCTGTCTCCCTACCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR-3UTR CCA 90 bp CAAAGCAGCTACTCCAGTCACCTCCAGGATGGCACTGTACTGCCGGTCACAAGCAGCACCATTTGGGGCTaGGGCTGGAGGCATCCCCAC +
Preference number: 2 (lower is better)
Translates to: QSSYSSHLQDGTVLPVTSSTIWG*GWRHPH
Trigger: GTGGGGATGCCTCCAGCCCCAGCCCCAAATGGTGCT...GCTTGTGACCGGCAGTACAGTGCCATCCTGGAGGTGACTGGAGTAGCTGCTTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR CAA 90 bp TCCATTCCCAGAGGCCTGTCTGGTAGGGAGACAGAAACAGCGGGCTaGAGGACGGGTAGTTGCCTGCCCCAGCCCATGTTAGCTCATTCG +
Preference number: 2 (lower is better)
Translates to: SIPRGLSGRETETAG*RTGSCLPQPMLAHS
Trigger: CGAATGAGCTAACATGGGCTGGGGCAGGCAACTACCCGTCCTCAAGCCCGCTGTTTCTGTCTCCCTACCAGACAGGCCTCTGGGAATGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR-3UTR TCA 90 bp AGCCAATACAGTACTGAGAAGGGACCTGGTTTGACACAGGAGGCTGGCAGGGAGGAGGAGGGGCAGGGCTaGCTCTCCCACAAAGCTAGC +
Preference number: 2 (lower is better)
Translates to: SQYSTEKGPGLTQEAGREEEGQG*LSHKAS
Trigger: GCTAGCTTTGTGGGAGAGTCAGCCCTGCCCCTCCTC...CTCCCTGCCAGCCTCCTGTGTCAAACCAGGTCCCTTCTCAGTACTGTATTGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR-3UTR CCA 90 bp CTAGGCAAGGGGCTGAAGAGTTCCCCTTGCCCTCACCCTGGGCCCAAAGCTCTGCTCCTGGCTTTGTCCTaGAAGAGGGTTCGGGGTATT +
Preference number: 2 (lower is better)
Translates to: LGKGLKSSPCPHPGPKALLLALS*KRVRGI
Trigger: AATACCCCGAACCCTCTTCCAGGACAAAGCCAGGAG...CAGAGCTTTGGGCCCAGGGTGAGGGCAAGGGGAACTCTTCAGCCCCTTGCCTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR-3UTR GCA 90 bp TTTGTCCTCCCTACTGACCCTGAATGCACCTGGCTCCCCAAGTGCTACCTAGGAGAAGGTGGCCACAGGTaGTGTCCTTCCCTCCCTCCT +
Preference number: 2 (lower is better)
Translates to: FVLPTDPECTWLPKCYLGEGGHR*CPSLPP
Trigger: AGGAGGGAGGGAAGGACAGCACCTGTGGCCACCTTC...TCCTAGGTAGCACTTGGGGAGCCAGGTGCATTCAGGGTCAGTAGGGAGGACAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR-3UTR GCA 90 bp CTGCACGTAGAGCCCCCTATTTTGTCCTCCCTACTGACCCTGAATGCACCTGGCCTGAAGAGTTCCCCTTaGCCTCACCCTGGGCCCAAA +
Preference number: 2 (lower is better)
Translates to: LHVEPPILSSLLTLNAPGLKSSP*PHPGPK
Trigger: TTTGGGCCCAGGGTGAGGGCAAGGGGAACTCTTCAG...GCCAGGTGCATTCAGGGTCAGTAGGGAGGACAAAATAGGGGGCTCTACGTGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR CAA 90 bp CTCCTGAAAGCACTGAGCCAATACAGTACTGAGAAGGGACCTGGTTaGACACAGGAGGCTGGCAGGGAGAGCTTGGGTCACTGGTGGACT +
Preference number: 2 (lower is better)
Translates to: LLKALSQYSTEKGPG*TQEAGRESLGHWWT
Trigger: AGTCCACCAGTGACCCAAGCTCTCCCTGCCAGCCTCCTGTGTCAAACCAGGTCCCTTCTCAGTACTGTATTGGCTCAGTGCTTTCAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR-3UTR CCA 90 bp ATTTCTCCACCTGTTAGCTTGGCGCCTGTTCAGAATCCCAGTGATGAAATGGCACCCTTGCCCTCACCCTaGGCCCAAAGCTCTGGGGTC +
Preference number: 2 (lower is better)
Translates to: ISPPVSLAPVQNPSDEMAPLPSP*AQSSGV
Trigger: GACCCCAGAGCTTTGGGCCCAGGGTGAGGGCAAGGG...TGCCATTTCATCACTGGGATTCTGAACAGGCGCCAAGCTAACAGGTGGAGAAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR CAA 90 bp AGGGAGAGCTTGGGTCACTGGTGGACTCTCCAGAGAAAACAGATATaGACAGTGAGGCAGGGCCACACCATGACAGCAGCCTTTCCTCAC +
Preference number: 2 (lower is better)
Translates to: RESLGHWWTLQRKQI*TVRQGHTMTAAFPH
Trigger: GTGAGGAAAGGCTGCTGTCATGGTGTGGCCCTGCCTCACTGTCAATATCTGTTTTCTCTGGAGAGTCCACCAGTGACCCAAGCTCTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR-3UTR GCA 90 bp CTGCACGTAGAGCCCCCTATTTTGTCCTCCCTACTGACCCTGAATGCACCTGGCCCCACAAGCAAGACTTaGAGGCAAGAGCTACAGACA +
Preference number: 2 (lower is better)
Translates to: LHVEPPILSSLLTLNAPGPTSKT*RQELQT
Trigger: TGTCTGTAGCTCTTGCCTGCAAGTCTTGCTTGTGGG...GCCAGGTGCATTCAGGGTCAGTAGGGAGGACAAAATAGGGGGCTCTACGTGCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR-3UTR GCA 90 bp GAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCCACCGTGCTGCCAGACTGAAGAGTTCCCCTTaGCCTCACCCTGGGCCCAAA +
Preference number: 2 (lower is better)
Translates to: EGQLIFLINLPCPHRAARLKSSP*PHPGPK
Trigger: TTTGGGCCCAGGGTGAGGGCAAGGGGAACTCTTCAG...TCTGGCAGCACGGTGGGGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR-3UTR TCA 90 bp CTGGCCCTTCTCTATAACTCCACTATTCAGGACCAAGGGTTCTCTCGCTCTAACCAAACTTCCCTCTGCTaGGCACAAGGCTCGGCATCC +
Preference number: 2 (lower is better)
Translates to: LALLYNSTIQDQGFSRSNQTSLC*AQGSAS
Trigger: GGATGCCGAGCCTTGTGCTCAGCAGAGGGAAGTTTG...GTTAGAGCGAGAGAACCCTTGGTCCTGAATAGTGGAGTTATAGAGAAGGGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR-3UTR CCA 90 bp CTGAGCCAATACAGTACTGAGAAGGGACCTGGTTTGACACAGGAGGCTGGCAGGAAGAGCTACAGACACTaGAGATTGGGGTTTGGGGAG +
Preference number: 2 (lower is better)
Translates to: LSQYSTEKGPGLTQEAGRKSYRH*RLGFGE
Trigger: CTCCCCAAACCCCAATCTCCAGTGTCTGTAGCTCTT...CCTGCCAGCCTCCTGTGTCAAACCAGGTCCCTTCTCAGTACTGTATTGGCTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR-3UTR CCA 90 bp AGCCAATACAGTACTGAGAAGGGACCTGGTTTGACACAGGAGGCTGGCAGGGAGTTCCTCCCACACATTTaGGGTTCTGTGTCAGCTTGG +
Preference number: 2 (lower is better)
Translates to: SQYSTEKGPGLTQEAGREFLPHI*GSVSAW
Trigger: CCAAGCTGACACAGAACCCCAAATGTGTGGGAGGAA...CTCCCTGCCAGCCTCCTGTGTCAAACCAGGTCCCTTCTCAGTACTGTATTGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR-3UTR CCA 90 bp AGGGCTCCTTCCATCTTAGGACTGGCCCTTCTCTATAACTCCACTATTCAGGACAGTAGCAGCACCATTTaGGGCTGGGGCTGGAGGCAT +
Preference number: 2 (lower is better)
Translates to: RAPSILGLALLYNSTIQDSSSTI*GWGWRH
Trigger: ATGCCTCCAGCCCCAGCCCCAAATGGTGCTGCTACT...GTCCTGAATAGTGGAGTTATAGAGAAGGGCCAGTCCTAAGATGGAAGGAGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR CAA 90 bp GACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTCATCTCAGTCTTaGGTCCGGGATCCTGGGCCTGATGAGCCCATAGTCCAGACCAAA +
Preference number: 2 (lower is better)
Translates to: DRVRNGLLLEGSSQS*VRDPGPDEPIVQTK
Trigger: TTTGGTCTGGACTATGGGCTCATCAGGCCCAGGATCCCGGACCAAAGACTGAGATGACCCTTCCAATAAAAGGCCATTTCGGACTCTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR-3UTR CCA 90 bp GGTTCTCTCGCTCTAACTAGTTCATGTTCTACTCAGCTGCTTCTCTCTCCATTCCCGGAAGAGGGAAGGTaGCCACAGGTGCTGTCCTTC +
Preference number: 2 (lower is better)
Translates to: GSLALTSSCSTQLLLSPFPEEGR*PQVLSF
Trigger: GAAGGACAGCACCTGTGGCCACCTTCCCTCTTCCGG...GAATGGAGAGAGAAGCAGCTGAGTAGAACATGAACTAGTTAGAGCGAGAGAACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR-3UTR CCA 90 bp AGCCAATACAGTACTGAGAAGGGACCTGGTTTGACACAGGAGGCTGGCAGGGAGGGTTCTGTGTCAGCTTaGGCACAGAGTTTCTACCTT +
Preference number: 2 (lower is better)
Translates to: SQYSTEKGPGLTQEAGREGSVSA*AQSFYL
Trigger: AAGGTAGAAACTCTGTGCCCAAGCTGACACAGAACC...CTCCCTGCCAGCCTCCTGTGTCAAACCAGGTCCCTTCTCAGTACTGTATTGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR-3UTR CCA 90 bp TTTGTCCTCCCTACTGACCCTGAATGCACCTGGCTCCCCAAGTGCTACCTAGGAATCCCAGTGATGAAATaGCAAAGCAGCTACTCCAGT +
Preference number: 2 (lower is better)
Translates to: FVLPTDPECTWLPKCYLGIPVMK*QSSYSS
Trigger: ACTGGAGTAGCTGCTTTGCCATTTCATCACTGGGAT...TCCTAGGTAGCACTTGGGGAGCCAGGTGCATTCAGGGTCAGTAGGGAGGACAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR-3UTR CCA 90 bp CTCCACTCCTGGCTTTGTCCTGGAAGAGGGTTCGGGGTATTCTACACCCCTCGTGAAATGGCCTTTTATTaGAAGGGTCATCTCAGTCTT +
Preference number: 2 (lower is better)
Translates to: LHSWLCPGRGFGVFYTPREMAFY*KGHLSL
Trigger: AAGACTGAGATGACCCTTCCAATAAAAGGCCATTTC...ACGAGGGGTGTAGAATACCCCGAACCCTCTTCCAGGACAAAGCCAGGAGTGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR-3UTR CCA 90 bp GGGAGCCTGCCTCAGTCCACTTTAGATTTCTTAGACCTGGGACATGAGTCACTATTCCTCCCACACATTTaGGGTTCTGTGTCAGCTTGG +
Preference number: 2 (lower is better)
Translates to: GSLPQSTLDFLDLGHESLFLPHI*GSVSAW
Trigger: CCAAGCTGACACAGAACCCCAAATGTGTGGGAGGAA...TAGTGACTCATGTCCCAGGTCTAAGAAATCTAAAGTGGACTGAGGCAGGCTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR-3UTR CCA 90 bp AGGAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCTCAGCTCCACTCCTaGCTTTGTCCTGGAAGAGGG +
Preference number: 2 (lower is better)
Translates to: RNWSRREGQLIFLINLPCPQLHS*LCPGRG
Trigger: CCCTCTTCCAGGACAAAGCCAGGAGTGGAGCTGAGG...ACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR-3UTR GCA 90 bp GAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCCCACAAGCAAGACTTaGAGGCAAGAGCTACAGACA +
Preference number: 2 (lower is better)
Translates to: ELVQKRGAIDISHKSALSPTSKT*RQELQT
Trigger: TGTCTGTAGCTCTTGCCTGCAAGTCTTGCTTGTGGG...GGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR-3UTR CCA 90 bp AGGAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTGGTTCTGTGTCAGCTTaGGCACAGAGTTTCTACCTT +
Preference number: 2 (lower is better)
Translates to: RNWSRREGQLIFLINLPCGSVSA*AQSFYL
Trigger: AAGGTAGAAACTCTGTGCCCAAGCTGACACAGAACC...ACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR CCA 72 bp GAGCCTGTGAAACCAGGACACCCGCCCTGGGGGCCGTaGCTAGTCCCGGAAGGCGGAGAGCATGTGTCCGTA +
Preference number: 3 (lower is better)
Translates to: EPVKPGHPPWGP*LVPEGGEHVSV
Trigger: TACGGACACATGCTCTCCGCCTTCCGGGACTAGCCACGGCCCCCAGGGCGGGTGTCCTGGTTTCACAGGCTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
3UTR GCA 72 bp GCAGCTACTCCAGTCACCTCCAGGATGGCACTGTACTaGCGGTCACAAGCACAGCCCAGGCACTTTCCCGTC +
Preference number: 3 (lower is better)
Translates to: AATPVTSRMALY*RSQAQPRHFPV
Trigger: GACGGGAAAGTGCCTGGGCTGTGCTTGTGACCGGCAGTACAGTGCCATCCTGGAGGTGACTGGAGTAGCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR CCA 72 bp AGAGTTCCCCTTGCCCTCACCCTGGGCCCAAAGCTCTaGGGTCCATTCCTCCCACACATTTGGGGTTCTGTG +
Preference number: 3 (lower is better)
Translates to: RVPLALTLGPKL*GPFLPHIWGSV
Trigger: CACAGAACCCCAAATGTGTGGGAGGAATGGACCCCAGAGCTTTGGGCCCAGGGTGAGGGCAAGGGGAACTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR GCA 72 bp AGGGAGACAGAAACAGCGGGCTTGAGGACGGGTAGTTaGCTGCCCCAGCCCATGTTAGCTCATTCGATCAGC +
Preference number: 3 (lower is better)
Translates to: RETETAGLRTGS*LPQPMLAHSIS
Trigger: GCTGATCGAATGAGCTAACATGGGCTGGGGCAGGCAACTACCCGTCCTCAAGCCCGCTGTTTCTGTCTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR CCA 72 bp CAACCTGGGTGCCCGACAGACACTCACGGGAGACCTTaGTCACATCCTCCAGAGACTTACAAAGGGGGAACG +
Preference number: 3 (lower is better)
Translates to: QPGCPTDTHGRP*SHPPETYKGGT
Trigger: CGTTCCCCCTTTGTAAGTCTCTGGAGGATGTGACCAAGGTCTCCCGTGAGTGTCTGTCGGGCACCCAGGTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR-3UTR CAA 90 bp CTAGGCAAGGGGCTGAAGAGTTCCCCTTGCCCTCACCCTGGGCCCAAAGCTCTGCGAAATGGCCTTTTATaGGAAGGGTCATCTCAGTCT +
Preference number: 3 (lower is better)
Translates to: LGKGLKSSPCPHPGPKALRNGLL*EGSSQS
Trigger: AGACTGAGATGACCCTTCCAATAAAAGGCCATTTCG...CAGAGCTTTGGGCCCAGGGTGAGGGCAAGGGGAACTCTTCAGCCCCTTGCCTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR-3UTR CAA 90 bp TTTGTCCTCCCTACTGACCCTGAATGCACCTGGCTCCCCAAGTGCTACCTAGGACCCAAGGTTAAGGAATaGGTCCAGAAGAGAGGGGCA +
Preference number: 3 (lower is better)
Translates to: FVLPTDPECTWLPKCYLGPKVKE*VQKRGA
Trigger: TGCCCCTCTCTTCTGGACCAATTCCTTAACCTTGGG...TCCTAGGTAGCACTTGGGGAGCCAGGTGCATTCAGGGTCAGTAGGGAGGACAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR TCA 72 bp ACACTCACTCCTGAAAGCACTGAGCCAATACAGTACTaGGAAGGGACCTGGTTTGACACAGGAGGCTGGCAG +
Preference number: 3 (lower is better)
Translates to: TLTPESTEPIQY*EGTWFDTGGWQ
Trigger: CTGCCAGCCTCCTGTGTCAAACCAGGTCCCTTCTCAGTACTGTATTGGCTCAGTGCTTTCAGGAGTGAGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR CCA 72 bp CCCTATTTTGTCCTCCCTACTGACCCTGAATGCACCTaGCTCCCCAAGTGCTACCTAGGACACTGCAAACTA +
Preference number: 3 (lower is better)
Translates to: PYFVLPTDPECT*LPKCYLGHCKL
Trigger: TAGTTTGCAGTGTCCTAGGTAGCACTTGGGGAGCCAGGTGCATTCAGGGTCAGTAGGGAGGACAAAATAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR CCA 72 bp AGTCCAAGCAGGACAGAGTCCGAAATGGCCTTTTATTaGAAGGGTCATCTCAGTCTTTGGTCCGGGATCCTG +
Preference number: 3 (lower is better)
Translates to: SPSRTESEMAFY*KGHLSLWSGIL
Trigger: CAGGATCCCGGACCAAAGACTGAGATGACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCCTGCTTGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR CCA 72 bp ACAGGGAGTTCTGGCTCATTTCTCCACCTGTTAGCTTaGCGCCTGTTCAGAATCCCAGTGATGAAATGGCAA +
Preference number: 3 (lower is better)
Translates to: TGSSGSFLHLLA*RLFRIPVMKWQ
Trigger: TTGCCATTTCATCACTGGGATTCTGAACAGGCGCCAAGCTAACAGGTGGAGAAATGAGCCAGAACTCCCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR TCA 72 bp ATTTCGGGTTCTATCACCCACCCTGATACTAGGCCCTaGGCTTTCCCAAGGTTAAGGAATTGGTCCAGAAGA +
Preference number: 3 (lower is better)
Translates to: ISGSITHPDTRP*AFPRLRNWSRR
Trigger: TCTTCTGGACCAATTCCTTAACCTTGGGAAAGCTCAGGGCCTAGTATCAGGGTGGGTGATAGAACCCGAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR-3UTR CAA 90 bp ATTTCTCCACCTGTTAGCTTGGCGCCTGTTCAGAATCCCAGTGATGAAATGGCACGAAATGGCCTTTTATaGGAAGGGTCATCTCAGTCT +
Preference number: 3 (lower is better)
Translates to: ISPPVSLAPVQNPSDEMARNGLL*EGSSQS
Trigger: AGACTGAGATGACCCTTCCAATAAAAGGCCATTTCG...TGCCATTTCATCACTGGGATTCTGAACAGGCGCCAAGCTAACAGGTGGAGAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR-3UTR CAA 90 bp TCAGACAGGGAGTTCTGGCTCATTTCTCCACCTGTTAGCTTGGCGCCTGTTCAGAGAAGAGAGGGGCAATaGATATTTCTCATAAATCTG +
Preference number: 3 (lower is better)
Translates to: SDREFWLISPPVSLAPVQRREGQ*IFLINL
Trigger: CAGATTTATGAGAAATATCAATTGCCCCTCTCTTCT...CTGAACAGGCGCCAAGCTAACAGGTGGAGAAATGAGCCAGAACTCCCTGTCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp CTAGGCAAGGGGCTGAAGAGTTCCCCTTGCCCTCACCCTGGGCCCAAAGCTCTGGCAGCGGACCCAGCGTaGACACACGGAAGCCCGCCG +
Preference number: 4 (lower is better)
Translates to: LGKGLKSSPCPHPGPKALAADPA*THGSPP
Trigger: CGGCGGGCTTCCGTGTGTCCACGCTGGGTCCGCTGC...CAGAGCTTTGGGCCCAGGGTGAGGGCAAGGGGAACTCTTCAGCCCCTTGCCTAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp TCCGTAGAGATAGTGGGAGTGAGCCCGAGCCGGGGGCGCACCCCCGTCAGACCCACGTGTGACCTGGAGTaGATGCCATCCACAAACGGC +
Preference number: 4 (lower is better)
Translates to: SVEIVGVSPSRGRTPVRPTCDLE*MPSTNG
Trigger: GCCGTTTGTGGATGGCATCCACTCCAGGTCACACGT...GGGTCTGACGGGGGTGCGCCCCCGGCTCGGGCTCACTCCCACTATCTCTACGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
CDS-3UTR TCA 90 bp CTAGGCAAGGGGCTGAAGAGTTCCCCTTGCCCTCACCCTGGGCCCAAAGCTCTGCGCTGGGCAGGGTCATaGCCCCCATTCGGTCCAGAT +
Preference number: 4 (lower is better)
Translates to: LGKGLKSSPCPHPGPKALRWAGS*PPFGPD
Trigger: ATCTGGACCGAATGGGGGTCATGACCCTGCCCAGCG...CAGAGCTTTGGGCCCAGGGTGAGGGCAAGGGGAACTCTTCAGCCCCTTGCCTAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GCCCTGGGGGCCGTGGCTAGTCCCGGAAGGCGGAGAGCATGTGTCCGTAGAGATATTCCTGCACCCTGCTaGAGGGCAGATACCTGCTGG +
Preference number: 4 (lower is better)
Translates to: ALGAVASPGRRRACVRRDIPAPC*RADTCW
Trigger: CCAGCAGGTATCTGCCCTGCAGCAGGGTGCAGGAAT...ATCTCTACGGACACATGCTCTCCGCCTTCCGGGACTAGCCACGGCCCCCAGGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
CDS-3UTR GCA 90 bp GCCCTCACCCTGGGCCCAAAGCTCTGGGGTCCATTCCTCCCACACATTTGGGGTCCGCTGGCGCACCCTTaGCAGCTCCTGGTTCTTCTC +
Preference number: 4 (lower is better)
Translates to: ALTLGPKLWGPFLPHIWGPLAHP*QLLVLL
Trigger: GAGAAGAACCAGGAGCTGGCAAGGGTGCGCCAGCGG...ACCCCAAATGTGTGGGAGGAATGGACCCCAGAGCTTTGGGCCCAGGGTGAGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GCCCTCACCCTGGGCCCAAAGCTCTGGGGTCCATTCCTCCCACACATTTGGGGTCCTCGACCCTTCAGCTaGTCCACCTCTTGGCGCAGC +
Preference number: 4 (lower is better)
Translates to: ALTLGPKLWGPFLPHIWGPRPFS*STSWRS
Trigger: GCTGCGCCAAGAGGTGGACCAGCTGAAGGGTCGAGG...ACCCCAAATGTGTGGGAGGAATGGACCCCAGAGCTTTGGGCCCAGGGTGAGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp TCTGGTAGGGAGACAGAAACAGCGGGCTTGAGGACGGGTAGTTGCCTGCCCCAGGGCGCCCAACACCCCTaGCAGTGGCGATGGCTTCCA +
Preference number: 4 (lower is better)
Translates to: SGRETETAGLRTGSCLPQGAQHP*QWRWLP
Trigger: TGGAAGCCATCGCCACTGCCAGGGGTGTTGGGCGCC...CTGGGGCAGGCAACTACCCGTCCTCAAGCCCGCTGTTTCTGTCTCCCTACCAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR TCA 90 bp TCTGGTAGGGAGACAGAAACAGCGGGCTTGAGGACGGGTAGTTGCCTGCCCCAGCCGGTCCACGGTGTCTaGCAGCCGCTTGTTGTGGTC +
Preference number: 4 (lower is better)
Translates to: SGRETETAGLRTGSCLPQPVHGV*QPLVVV
Trigger: GACCACAACAAGCGGCTGTCAGACACCGTGGACCGG...CTGGGGCAGGCAACTACCCGTCCTCAAGCCCGCTGTTTCTGTCTCCCTACCAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR TCA 90 bp GCCCTCACCCTGGGCCCAAAGCTCTGGGGTCCATTCCTCCCACACATTTGGGGTGAGATGACATCGACCTaGGTGCCCACCAAGCCCCCA +
Preference number: 4 (lower is better)
Translates to: ALTLGPKLWGPFLPHIWGEMTST*VPTKPP
Trigger: TGGGGGCTTGGTGGGCACTCAGGTCGATGTCATCTC...ACCCCAAATGTGTGGGAGGAATGGACCCCAGAGCTTTGGGCCCAGGGTGAGGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp ACCTGGGTGCCCGACAGACACTCACGGGAGACCTTGGTCACATCCTCCAGAGACCCGCAGCGTCCTGGGTaGGGAAGGAGGAGAAGTCTC +
Preference number: 4 (lower is better)
Translates to: TWVPDRHSRETLVTSSRDPQRPG*GRRRSL
Trigger: GAGACTTCTCCTCCTTCCTCACCCAGGACGCTGCGG...GTCTCTGGAGGATGTGACCAAGGTCTCCCGTGAGTGTCTGTCGGGCACCCAGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp TCTACTCAGCTGCTTCTCTCTCCATTCCCAGAGGCCTGTCTGGTAGGGAGACAGGGTCTCGGCGGGCCGTaGCCAGGTCCTCCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: STQLLLSPFPEACLVGRQGLGGP*PGPPPA
Trigger: AGCTGGAGGAGGACCTGGGCACGGCCCGCCGAGACC...CTGTCTCCCTACCAGACAGGCCTCTGGGAATGGAGAGAGAAGCAGCTGAGTAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
CDS-3UTR GCA 90 bp TCCGTAGAGATAGTGGGAGTGAGCCCGAGCCGGGGGCGCACCCCCGTCAGACCCTTGCGCATGGTCTGCTaGAACTTCTGCTCTGCTACT +
Preference number: 4 (lower is better)
Translates to: SVEIVGVSPSRGRTPVRPLRMVC*NFCSAT
Trigger: AGTAGCAGAGCAGAAGTTGCAGCAGACCATGCGCAA...GGGTCTGACGGGGGTGCGCCCCCGGCTCGGGCTCACTCCCACTATCTCTACGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
CDS-3UTR GCA 90 bp CTAGGCAAGGGGCTGAAGAGTTCCCCTTGCCCTCACCCTGGGCCCAAAGCTCTGGGGTCTGGGCCCAGCTaGCCTCCTCACTGTCTGTTT +
Preference number: 4 (lower is better)
Translates to: LGKGLKSSPCPHPGPKALGSGPS*PPHCLF
Trigger: AAACAGACAGTGAGGAGGGCAGCTGGGCCCAGACCC...CAGAGCTTTGGGCCCAGGGTGAGGGCAAGGGGAACTCTTCAGCCCCTTGCCTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp TCTCTCTCCATTCCCAGAGGCCTGTCTGGTAGGGAGACAGAAACAGCGGGCTTGCTTAGGCGGGGCAGGTaGAGGCTGCAGCGGACCCAG +
Preference number: 4 (lower is better)
Translates to: SLSIPRGLSGRETETAGLLRRGR*RLQRTQ
Trigger: CTGGGTCCGCTGCAGCCTCCACCTGCCCCGCCTAAG...CAAGCCCGCTGTTTCTGTCTCCCTACCAGACAGGCCTCTGGGAATGGAGAGAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR TCA 90 bp GCCCTCACCCTGGGCCCAAAGCTCTGGGGTCCATTCCTCCCACACATTTGGGGTGTTCCTCAGCCTTGGTaGGGGCTGCGATTCTCTGAG +
Preference number: 4 (lower is better)
Translates to: ALTLGPKLWGPFLPHIWGVPQPW*GLRFSE
Trigger: CTCAGAGAATCGCAGCCCTCACCAAGGCTGAGGAAC...ACCCCAAATGTGTGGGAGGAATGGACCCCAGAGCTTTGGGCCCAGGGTGAGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GGAAGCACAAAAGGCCATCAGGCCATCTCTCTAGGCAAGGGGCTGAAGAGTTCCGCAGCTGGGTCAGGTTaGGGGCCTCCATGCTGCCGC +
Preference number: 4 (lower is better)
Translates to: GSTKGHQAISLGKGLKSSAAGSG*GPPCCR
Trigger: GCGGCAGCATGGAGGCCCTCAACCTGACCCAGCTGC...GGAACTCTTCAGCCCCTTGCCTAGAGAGATGGCCTGATGGCCTTTTGTGCTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GCTGTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGTGGCCAGGCGGAGCTTaGGCCTGTGCAGGGCATTGC +
Preference number: 4 (lower is better)
Translates to: AVLPSLLQNLKHLQPGCPWPGGA*ACAGHC
Trigger: GCAATGCCCTGCACAGGCTCAAGCTCCGCCTGGCCA...CGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp CTAGGCAAGGGGCTGAAGAGTTCCCCTTGCCCTCACCCTGGGCCCAAAGCTCTGCCTCCATGCTGCCGCTaGTCACACGGGTCTCAATCT +
Preference number: 4 (lower is better)
Translates to: LGKGLKSSPCPHPGPKALPPCCR*SHGSQS
Trigger: AGATTGAGACCCGTGTGACCAGCGGCAGCATGGAGG...CAGAGCTTTGGGCCCAGGGTGAGGGCAAGGGGAACTCTTCAGCCCCTTGCCTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp TCTCTCTCCATTCCCAGAGGCCTGTCTGGTAGGGAGACAGAAACAGCGGGCTTGCCACGCTTGCGCAGCTaGGTCAGGTTGAGGGCCTCC +
Preference number: 4 (lower is better)
Translates to: SLSIPRGLSGRETETAGLPRLRS*VRLRAS
Trigger: GGAGGCCCTCAACCTGACCCAGCTGCGCAAGCGTGG...CAAGCCCGCTGTTTCTGTCTCCCTACCAGACAGGCCTCTGGGAATGGAGAGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp CTCCACTCCTGGCTTTGTCCTGGAAGAGGGTTCGGGGTATTCTACACCCCTCGTCCACGCTTGCGCAGCTaGGTCAGGTTGAGGGCCTCC +
Preference number: 4 (lower is better)
Translates to: LHSWLCPGRGFGVFYTPRPRLRS*VRLRAS
Trigger: GGAGGCCCTCAACCTGACCCAGCTGCGCAAGCGTGG...ACGAGGGGTGTAGAATACCCCGAACCCTCTTCCAGGACAAAGCCAGGAGTGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp CCGGTCACAAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTACCACGCTTGCGCAGCTaGGTCAGGTTGAGGGCCTCC +
Preference number: 4 (lower is better)
Translates to: PVTSTAQALSRPLPFRVLPRLRS*VRLRAS
Trigger: GGAGGCCCTCAACCTGACCCAGCTGCGCAAGCGTGG...TAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTTGTGACCGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GCAAGACTTGCAGGCAAGAGCTACAGACACTGGAGATTGGGGTTTGGGGAGGAGCTTAGGCGGGGCAGGTaGAGGCTGCAGCGGACCCAG +
Preference number: 4 (lower is better)
Translates to: ARLAGKSYRHWRLGFGEELRRGR*RLQRTQ
Trigger: CTGGGTCCGCTGCAGCCTCCACCTGCCCCGCCTAAG...CTCCTCCCCAAACCCCAATCTCCAGTGTCTGTAGCTCTTGCCTGCAAGTCTTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp CCGGTCACAAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTACAGCACTTCGGGAAGTaGGCTTGGGTGTGGAGCGGC +
Preference number: 4 (lower is better)
Translates to: PVTSTAQALSRPLPFRVLQHFGK*AWVWSG
Trigger: GCCGCTCCACACCCAAGCTCACTTCCCGAAGTGCTG...TAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTTGTGACCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp CAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGGAGACCTTGGTCACACTCTTGCCCTCCTCTTaGCTCAGGCCAGGGTGGCCA +
Preference number: 4 (lower is better)
Translates to: QTPTTWVPDRHSRETLVTLLPSS*LRPGWP
Trigger: TGGCCACCCTGGCCTGAGTCAAGAGGAGGGCAAGAG...TGTGACCAAGGTCTCCCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp CCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGTGGCCAGGCGGAGCTTaGGCCTGTGCAGGGCATTGC +
Preference number: 4 (lower is better)
Translates to: PPTESQTPTTWVPDRHSRWPGGA*ACAGHC
Trigger: GCAATGCCCTGCACAGGCTCAAGCTCCGCCTGGCCA...CCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp ACCTGGGTGCCCGACAGACACTCACGGGAGACCTTGGTCACATCCTCCAGAGACTCCCGCTCCAGAAGCTaGTCCCGACACATGCTTAGC +
Preference number: 4 (lower is better)
Translates to: TWVPDRHSRETLVTSSRDSRSRS*SRHMLS
Trigger: GCTAAGCATGTGTCGGGAGCAGCTTCTGGAGCGGGA...GTCTCTGGAGGATGTGACCAAGGTCTCCCGTGAGTGTCTGTCGGGCACCCAGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GAGAAAGGGAACGAGCAGGAAGGGTCAGGGCCGGCTGAGCCTGTGAAACCAGGAATTCCTGCACCCTGCTaGAGGGCAGATACCTGCTGG +
Preference number: 4 (lower is better)
Translates to: EKGNEQEGSGPAEPVKPGIPAPC*RADTCW
Trigger: CCAGCAGGTATCTGCCCTGCAGCAGGGTGCAGGAAT...TCCTGGTTTCACAGGCTCAGCCGGCCCTGACCCTTCCTGCTCGTTCCCTTTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GAGAAAGGGAACGAGCAGGAAGGGTCAGGGCCGGCTGAGCCTGTGAAACCAGGACGAATTCCTGCACCCTaGTGCAGGGCAGATACCTGC +
Preference number: 4 (lower is better)
Translates to: EKGNEQEGSGPAEPVKPGRIPAP*CRADTC
Trigger: GCAGGTATCTGCCCTGCAGCAGGGTGCAGGAATTCG...TCCTGGTTTCACAGGCTCAGCCGGCCCTGACCCTTCCTGCTCGTTCCCTTTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GAGAAAGGGAACGAGCAGGAAGGGTCAGGGCCGGCTGAGCCTGTGAAACCAGGACCTCCAAGGCACTCTTaGCCTCCTCTTGACTCAGGC +
Preference number: 4 (lower is better)
Translates to: EKGNEQEGSGPAEPVKPGPPRHS*PPLDSG
Trigger: GCCTGAGTCAAGAGGAGGGCAAGAGTGCCTTGGAGG...TCCTGGTTTCACAGGCTCAGCCGGCCCTGACCCTTCCTGCTCGTTCCCTTTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCCACCGTGCTGCCAGAGGGGCAGGTGGAGGCTaGAGCGGACCCAGCGTGGAC +
Preference number: 4 (lower is better)
Translates to: EGQLIFLINLPCPHRAARGAGGG*SGPSVD
Trigger: GTCCACGCTGGGTCCGCTGCAGCCTCCACCTGCCCC...TCTGGCAGCACGGTGGGGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GCCCTCACCCTGGGCCCAAAGCTCTGGGGTCCATTCCTCCCACACATTTGGGGTGGTCATGGATGGATGTaGCTTCTCGCTGAGCAGCCA +
Preference number: 4 (lower is better)
Translates to: ALTLGPKLWGPFLPHIWGGHGWM*LLAEQP
Trigger: TGGCTGCTCAGCGAGAAGCCACATCCATCCATGACC...ACCCCAAATGTGTGGGAGGAATGGACCCCAGAGCTTTGGGCCCAGGGTGAGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GCCCTCACCCTGGGCCCAAAGCTCTGGGGTCCATTCCTCCCACACATTTGGGGTACCCTTGCCAGCTCCTaGTTCTTCTCTTCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: ALTLGPKLWGPFLPHIWGTLASS*FFSSSC
Trigger: GCAGCTGGAAGAGAAGAACCAGGAGCTGGCAAGGGT...ACCCCAAATGTGTGGGAGGAATGGACCCCAGAGCTTTGGGCCCAGGGTGAGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp CTAGGCAAGGGGCTGAAGAGTTCCCCTTGCCCTCACCCTGGGCCCAAAGCTCTGTGCCCACGTGTGACCTaGAGTGGATGCCATCCACAA +
Preference number: 4 (lower is better)
Translates to: LGKGLKSSPCPHPGPKALCPRVT*SGCHPQ
Trigger: TTGTGGATGGCATCCACTCCAGGTCACACGTGGGCA...CAGAGCTTTGGGCCCAGGGTGAGGGCAAGGGGAACTCTTCAGCCCCTTGCCTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp CCTGATGAGCCCATAGTCCAGACCAAAACAGATCCGGAAGAGGGAAGGTGGCCAGGCGCCCAACACCCCTaGCAGTGGCGATGGCTTCCA +
Preference number: 4 (lower is better)
Translates to: PDEPIVQTKTDPEEGRWPGAQHP*QWRWLP
Trigger: TGGAAGCCATCGCCACTGCCAGGGGTGTTGGGCGCC...TGGCCACCTTCCCTCTTCCGGATCTGTTTTGGTCTGGACTATGGGCTCATCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GGGTTTGGGGAGGAGGGAGTGATACTGAGAGAGGAGGTGGCAAAACCACTCAGAGCGGCCACTGAGCGGTaGAGATGCACTGGCCAGGGA +
Preference number: 4 (lower is better)
Translates to: GFGEEGVILREEVAKPLRAATER*RCTGQG
Trigger: TCCCTGGCCAGTGCATCTCCACCGCTCAGTGGCCGC...TCTGAGTGGTTTTGCCACCTCCTCTCTCAGTATCACTCCCTCCTCCCCAAACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GAGAAAGGGAACGAGCAGGAAGGGTCAGGGCCGGCTGAGCCTGTGAAACCAGGATGCTGTTGCTGCTGCTaGGGTTGCTGTCCTGACCCT +
Preference number: 4 (lower is better)
Translates to: EKGNEQEGSGPAEPVKPGCCCCC*GCCPDP
Trigger: AGGGTCAGGACAGCAACCCCAGCAGCAGCAACAGCA...TCCTGGTTTCACAGGCTCAGCCGGCCCTGACCCTTCCTGCTCGTTCCCTTTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp ACCTGGGTGCCCGACAGACACTCACGGGAGACCTTGGTCACATCCTCCAGAGACTTGTGCAGGGAGTCCTaGCTGCTGTTGCTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: TWVPDRHSRETLVTSSRDLCRES*LLLLLL
Trigger: CAGCAGCAGCAACAGCAGCCAGGACTCCCTGCACAA...GTCTCTGGAGGATGTGACCAAGGTCTCCCGTGAGTGTCTGTCGGGCACCCAGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR CAA 72 bp AGAGGCCTGTCTGGTAGGGAGACAGAAACAGCGGGCTaGAGGACGGGTAGTTGCCTGCCCCAGCCCATGTTA +
Preference number: 4 (lower is better)
Translates to: RGLSGRETETAG*RTGSCLPQPML
Trigger: TAACATGGGCTGGGGCAGGCAACTACCCGTCCTCAAGCCCGCTGTTTCTGTCTCCCTACCAGACAGGCCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR TCA 90 bp CTGAGCCAATACAGTACTGAGAAGGGACCTGGTTTGACACAGGAGGCTGGCAGGTCTCGGAGGTCCCGCTaGTGCTTGCTGCTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LSQYSTEKGPGLTQEAGRSRRSR*CLLLSS
Trigger: GGAGCTGAGCAGCAAGCATCAGCGGGACCTCCGAGA...CCTGCCAGCCTCCTGTGTCAAACCAGGTCCCTTCTCAGTACTGTATTGGCTCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
CDS-3UTR TCA 90 bp CTCCACTCCTGGCTTTGTCCTGGAAGAGGGTTCGGGGTATTCTACACCCCTCGTTCCATGTCCTCCTTCTaGGCCAGAGCCTCTCGGAGG +
Preference number: 4 (lower is better)
Translates to: LHSWLCPGRGFGVFYTPRSMSSF*ARASRR
Trigger: CCTCCGAGAGGCTCTGGCTCAGAAGGAGGACATGGA...ACGAGGGGTGTAGAATACCCCGAACCCTCTTCCAGGACAAAGCCAGGAGTGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp AAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATCACCCACCCGGTCCACGGTGTCTaGCAGCCGCTTGTTGTGGTC +
Preference number: 4 (lower is better)
Translates to: KHSPGTFPSSSISGSITHPVHGV*QPLVVV
Trigger: GACCACAACAAGCGGCTGTCAGACACCGTGGACCGG...GTGGGTGATAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GCTGTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGCAGCCATTCGCTCCTTaGGGTGGAGCTGCAGGCGTT +
Preference number: 4 (lower is better)
Translates to: AVLPSLLQNLKHLQPGCPQPFAP*GGAAGV
Trigger: AACGCCTGCAGCTCCACCTCAAGGAGCGAATGGCTG...CGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GCAAGACTTGCAGGCAAGAGCTACAGACACTGGAGATTGGGGTTTGGGGAGGAGCAGCACTTCGGGAAGTaGGCTTGGGTGTGGAGCGGC +
Preference number: 4 (lower is better)
Translates to: ARLAGKSYRHWRLGFGEEQHFGK*AWVWSG
Trigger: GCCGCTCCACACCCAAGCTCACTTCCCGAAGTGCTG...CTCCTCCCCAAACCCCAATCTCCAGTGTCTGTAGCTCTTGCCTGCAAGTCTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GGGTTTGGGGAGGAGGGAGTGATACTGAGAGAGGAGGTGGCAAAACCACTCAGACAGCACTTCGGGAAGTaGGCTTGGGTGTGGAGCGGC +
Preference number: 4 (lower is better)
Translates to: GFGEEGVILREEVAKPLRQHFGK*AWVWSG
Trigger: GCCGCTCCACACCCAAGCTCACTTCCCGAAGTGCTG...TCTGAGTGGTTTTGCCACCTCCTCTCTCAGTATCACTCCCTCCTCCCCAAACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp CCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGCCGCAGCGTCCTGGGTaGGGAAGGAGGAGAAGTCTC +
Preference number: 4 (lower is better)
Translates to: PPTESQTPTTWVPDRHSRPQRPG*GRRRSL
Trigger: GAGACTTCTCCTCCTTCCTCACCCAGGACGCTGCGG...CCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp TGTACTGCCGGTCACAAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGCTGGGGTTGCTGTCCTaGCCCTCCAAGGCACTCTTG +
Preference number: 4 (lower is better)
Translates to: CTAGHKHSPGTFPSSSISLGLLS*PSKALL
Trigger: CAAGAGTGCCTTGGAGGGTCAGGACAGCAACCCCAG...CGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTTGTGACCGGCAGTACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp TTAGCCAAACTTCCCTCTGCTGAGCACAAGGCTCGGCATCCTTTTCAGACAGGGTGGCCAGGCGGAGCTTaGGCCTGTGCAGGGCATTGC +
Preference number: 4 (lower is better)
Translates to: LAKLPSAEHKARHPFQTGWPGGA*ACAGHC
Trigger: GCAATGCCCTGCACAGGCTCAAGCTCCGCCTGGCCA...CCCTGTCTGAAAAGGATGCCGAGCCTTGTGCTCAGCAGAGGGAAGTTTGGCTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR TCA 90 bp TCTCTCTCCATTCCCAGAGGCCTGTCTGGTAGGGAGACAGAAACAGCGGGCTTGGCAGGTCCTTCTTGGTaGGGTGATCCAGCATGCGGG +
Preference number: 4 (lower is better)
Translates to: SLSIPRGLSGRETETAGLAGPSW*GDPACG
Trigger: CCCGCATGCTGGATCACCTCACCAAGAAGGACCTGC...CAAGCCCGCTGTTTCTGTCTCCCTACCAGACAGGCCTCTGGGAATGGAGAGAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR GCA 90 bp TCTGGTAGGGAGACAGAAACAGCGGGCTTGAGGACGGGTAGTTGCCTGCCCCAGGCCTTGCGCATGGTCTaGTGCAACTTCTGCTCTGCT +
Preference number: 4 (lower is better)
Translates to: SGRETETAGLRTGSCLPQALRMV*CNFCSA
Trigger: AGCAGAGCAGAAGTTGCAGCAGACCATGCGCAAGGC...CTGGGGCAGGCAACTACCCGTCCTCAAGCCCGCTGTTTCTGTCTCCCTACCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR GCA 90 bp TGTACTGCCGGTCACAAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGCTGCTGTTGCTGCTaGTGGGGTTGCTGTCCTGAC +
Preference number: 4 (lower is better)
Translates to: CTAGHKHSPGTFPSSSISGCCCC*WGCCPD
Trigger: GTCAGGACAGCAACCCCAGCAGCAGCAACAGCAGCC...CGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTTGTGACCGGCAGTACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GGGTTTGGGGAGGAGGGAGTGATACTGAGAGAGGAGGTGGCAAAACCACTCAGACTTGGCGGGCCTGGGTaGTCTGTGTGGGGATCTGCA +
Preference number: 4 (lower is better)
Translates to: GFGEEGVILREEVAKPLRLGGPG*SVWGSA
Trigger: TGCAGATCCCCACACAGAGCACCCAGGCCCGCCAAG...TCTGAGTGGTTTTGCCACCTCCTCTCTCAGTATCACTCCCTCCTCCCCAAACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp AGGGCTCCTTCCATCTTAGGACTGGCCCTTCTCTATAACTCCACTATTCAGGACGGGGCAGGTGGAGGCTaGAGCGGACCCAGCGTGGAC +
Preference number: 4 (lower is better)
Translates to: RAPSILGLALLYNSTIQDGAGGG*SGPSVD
Trigger: GTCCACGCTGGGTCCGCTGCAGCCTCCACCTGCCCC...GTCCTGAATAGTGGAGTTATAGAGAAGGGCCAGTCCTAAGATGGAAGGAGCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp GCCCTCACCCTGGGCCCAAAGCTCTGGGGTCCATTCCTCCCACACATTTGGGGTTTTCCACAGGCGTTTTaGTCCCAGATCCACAGTCCC +
Preference number: 4 (lower is better)
Translates to: ALTLGPKLWGPFLPHIWGFPQAF*SQIHSP
Trigger: GGGACTGTGGATCTGGGACCAAAACGCCTGTGGAAA...ACCCCAAATGTGTGGGAGGAATGGACCCCAGAGCTTTGGGCCCAGGGTGAGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp TCTGGTAGGGAGACAGAAACAGCGGGCTTGAGGACGGGTAGTTGCCTGCCCCAGGCTTTCTCCTCACACTaGCGGTGCAGGGATTCCTTG +
Preference number: 4 (lower is better)
Translates to: SGRETETAGLRTGSCLPQAFSSH*RCRDSL
Trigger: CAAGGAATCCCTGCACCGCCAGTGTGAGGAGAAAGC...CTGGGGCAGGCAACTACCCGTCCTCAAGCCCGCTGTTTCTGTCTCCCTACCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp AGCCAATACAGTACTGAGAAGGGACCTGGTTTGACACAGGAGGCTGGCAGGGAGCCTCGACCCTTCAGCTaGTCCACCTCTTGGCGCAGC +
Preference number: 4 (lower is better)
Translates to: SQYSTEKGPGLTQEAGREPRPFS*STSWRS
Trigger: GCTGCGCCAAGAGGTGGACCAGCTGAAGGGTCGAGG...CTCCCTGCCAGCCTCCTGTGTCAAACCAGGTCCCTTCTCAGTACTGTATTGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp TGTACTGCCGGTCACAAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGCCCTGGCAGTGGCGATaGCTTCCAGTCCTTGGCAGA +
Preference number: 4 (lower is better)
Translates to: CTAGHKHSPGTFPSSSISPWQWR*LPVLGR
Trigger: TCTGCCAAGGACTGGAAGCCATCGCCACTGCCAGGG...CGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTTGTGACCGGCAGTACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp CTCCACTCCTGGCTTTGTCCTGGAAGAGGGTTCGGGGTATTCTACACCCCTCGTGCATCCCGACTCAGCTaGATCAGCCTGCCCTTCTCC +
Preference number: 4 (lower is better)
Translates to: LHSWLCPGRGFGVFYTPRASRLS*ISLPFS
Trigger: GGAGAAGGGCAGGCTGATCCAGCTGAGTCGGGATGC...ACGAGGGGTGTAGAATACCCCGAACCCTCTTCCAGGACAAAGCCAGGAGTGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp CCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGGCCAGGAGACCACCGTaGGGCCATCCCATTGGGCAA +
Preference number: 4 (lower is better)
Translates to: PPTESQTPTTWVPDRHSRARRPP*GHPIGQ
Trigger: TTGCCCAATGGGATGGCCCCACGGTGGTCTCCTGGC...CCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp TGTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACGCCAGGAGACCACCGTaGGGCCATCCCATTGGGCAA +
Preference number: 4 (lower is better)
Translates to: CPSLPPTESQTPTTWVPDARRPP*GHPIGQ
Trigger: TTGCCCAATGGGATGGCCCCACGGTGGTCTCCTGGC...GTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp CTGGCCCTTCTCTATAACTCCACTATTCAGGACCAAGGGTTCTCTCGCTCTAACGCAGCGGACCCAGCGTaGACACACGGAAGCCCGCCG +
Preference number: 4 (lower is better)
Translates to: LALLYNSTIQDQGFSRSNAADPA*THGSPP
Trigger: CGGCGGGCTTCCGTGTGTCCACGCTGGGTCCGCTGC...GTTAGAGCGAGAGAACCCTTGGTCCTGAATAGTGGAGTTATAGAGAAGGGCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp GGACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTCATCTCAGTCTTTGGTCCGGCAGCGGACCCAGCGTaGACACACGGAAGCCCGCCG +
Preference number: 4 (lower is better)
Translates to: GQSPKWPFIGRVISVFGPAADPA*THGSPP
Trigger: CGGCGGGCTTCCGTGTGTCCACGCTGGGTCCGCTGC...CGGACCAAAGACTGAGATGACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp CCTGATGAGCCCATAGTCCAGACCAAAACAGATCCGGAAGAGGGAAGGTGGCCACACTGTCATCCGCAATaGCCGCTCATGGCGGGACAC +
Preference number: 4 (lower is better)
Translates to: PDEPIVQTKTDPEEGRWPHCHPQ*PLMAGH
Trigger: GTGTCCCGCCATGAGCGGTCATTGCGGATGACAGTG...TGGCCACCTTCCCTCTTCCGGATCTGTTTTGGTCTGGACTATGGGCTCATCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp TGTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACGCAGATACCTGCTGGTaGGCTCCTGCCAACTGCTCC +
Preference number: 4 (lower is better)
Translates to: CPSLPPTESQTPTTWVPDADTCW*APANCS
Trigger: GGAGCAGTTGGCAGGAGCTCACCAGCAGGTATCTGC...GTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp CCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGTCCATGTCCTCCTTCTaGGCCAGAGCCTCTCGGAGG +
Preference number: 4 (lower is better)
Translates to: PPTESQTPTTWVPDRHSRSMSSF*ARASRR
Trigger: CCTCCGAGAGGCTCTGGCTCAGAAGGAGGACATGGA...CCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp CCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGAGGGCTGCGATTCTCTaGGACAGCTCAGCCTCCACC +
Preference number: 4 (lower is better)
Translates to: PPTESQTPTTWVPDRHSRRAAIL*DSSAST
Trigger: GGTGGAGGCTGAGCTGTCTCAGAGAATCGCAGCCCT...CCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GCAAGACTTGCAGGCAAGAGCTACAGACACTGGAGATTGGGGTTTGGGGAGGAGAGGGCTGCGATTCTCTaGGACAGCTCAGCCTCCACC +
Preference number: 4 (lower is better)
Translates to: ARLAGKSYRHWRLGFGEERAAIL*DSSAST
Trigger: GGTGGAGGCTGAGCTGTCTCAGAGAATCGCAGCCCT...CTCCTCCCCAAACCCCAATCTCCAGTGTCTGTAGCTCTTGCCTGCAAGTCTTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp CTGCACGTAGAGCCCCCTATTTTGTCCTCCCTACTGACCCTGAATGCACCTGGCGTTCCTCAGCCTTGGTaGGGGCTGCGATTCTCTGAG +
Preference number: 4 (lower is better)
Translates to: LHVEPPILSSLLTLNAPGVPQPW*GLRFSE
Trigger: CTCAGAGAATCGCAGCCCTCACCAAGGCTGAGGAAC...GCCAGGTGCATTCAGGGTCAGTAGGGAGGACAAAATAGGGGGCTCTACGTGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR TCA 90 bp CACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATCACCCACCCTGTTCCTCAGCCTTGGTaGGGGCTGCGATTCTCTGAG +
Preference number: 4 (lower is better)
Translates to: HSPGTFPSSSISGSITHPVPQPW*GLRFSE
Trigger: CTCAGAGAATCGCAGCCCTCACCAAGGCTGAGGAAC...AGGGTGGGTGATAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp TGTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACCAGCCATTCGCTCCTTaGGGTGGAGCTGCAGGCGTT +
Preference number: 4 (lower is better)
Translates to: CPSLPPTESQTPTTWVPDQPFAP*GGAAGV
Trigger: AACGCCTGCAGCTCCACCTCAAGGAGCGAATGGCTG...GTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp CCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGCTGGGGTTGCTGTCCTaGCCCTCCAAGGCACTCTTG +
Preference number: 4 (lower is better)
Translates to: PPTESQTPTTWVPDRHSRLGLLS*PSKALL
Trigger: CAAGAGTGCCTTGGAGGGTCAGGACAGCAACCCCAG...CCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp TCTCTCTCCATTCCCAGAGGCCTGTCTGGTAGGGAGACAGAAACAGCGGGCTTGCAGGCGGCCAATGGATaGCTTGATGCCCTTGCGCTT +
Preference number: 4 (lower is better)
Translates to: SLSIPRGLSGRETETAGLQAANG*LDALAL
Trigger: AAGCGCAAGGGCATCAAGTCATCCATTGGCCGCCTG...CAAGCCCGCTGTTTCTGTCTCCCTACCAGACAGGCCTCTGGGAATGGAGAGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR TCA 90 bp CAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGGAGACCTTGGTCACACAGGCGGCCAATGGATaGCTTGATGCCCTTGCGCTT +
Preference number: 4 (lower is better)
Translates to: QTPTTWVPDRHSRETLVTQAANG*LDALAL
Trigger: AAGCGCAAGGGCATCAAGTCATCCATTGGCCGCCTG...TGTGACCAAGGTCTCCCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GCTGTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGCAGGCGGCCAATGGATaGCTTGATGCCCTTGCGCTT +
Preference number: 4 (lower is better)
Translates to: AVLPSLLQNLKHLQPGCPQAANG*LDALAL
Trigger: AAGCGCAAGGGCATCAAGTCATCCATTGGCCGCCTG...CGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GGGTTTGGGGAGGAGGGAGTGATACTGAGAGAGGAGGTGGCAAAACCACTCAGATGTGCAGGGCATTGCTaGTGCCGATCTCCCGCTGGA +
Preference number: 4 (lower is better)
Translates to: GFGEEGVILREEVAKPLRCAGHC*CRSPAG
Trigger: TCCAGCGGGAGATCGGCATCAGCAATGCCCTGCACA...TCTGAGTGGTTTTGCCACCTCCTCTCTCAGTATCACTCCCTCCTCCCCAAACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GCTGTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGTCCTTCTTGGTGAGGTaGTCCAGCATGCGGGCATCC +
Preference number: 4 (lower is better)
Translates to: AVLPSLLQNLKHLQPGCPSFLVR*SSMRAS
Trigger: GGATGCCCGCATGCTGGATCACCTCACCAAGAAGGA...CGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp ATCTCAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGGAGACCTTGGTGCAGGTCCTTCTTGGTaGGGTGATCCAGCATGCGGG +
Preference number: 4 (lower is better)
Translates to: ISNTYNLGARQTLTGDLGAGPSW*GDPACG
Trigger: CCCGCATGCTGGATCACCTCACCAAGAAGGACCTGC...ACCAAGGTCTCCCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTGAGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp CACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATCACCCACCCTTCCATCCCGAATTCCTaGACCCTGCTGCAGGGCAGA +
Preference number: 4 (lower is better)
Translates to: HSPGTFPSSSISGSITHPSIPNS*TLLQGR
Trigger: TCTGCCCTGCAGCAGGGTGCAGGAATTCGGGATGGA...AGGGTGGGTGATAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp TCCAGAAGGCCAATTAGTCCAAGCAGGACAGAGTCCGAAATGGCCTTTTATTGGGGTCTCGGCGGGCCGTaGCCAGGTCCTCCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: SRRPISPSRTESEMAFYWGLGGP*PGPPPA
Trigger: AGCTGGAGGAGGACCTGGGCACGGCCCGCCGAGACC...CCAATAAAAGGCCATTTCGGACTCTGTCCTGCTTGGACTAATTGGCCTTCTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp TCTCTCTCCATTCCCAGAGGCCTGTCTGGTAGGGAGACAGAAACAGCGGGCTTGGGTCCCGCTGATGCTTaGTGCTCAGCTCCTCTGACT +
Preference number: 4 (lower is better)
Translates to: SLSIPRGLSGRETETAGLGPADA*CSAPLT
Trigger: AGTCAGAGGAGCTGAGCAGCAAGCATCAGCGGGACC...CAAGCCCGCTGTTTCTGTCTCCCTACCAGACAGGCCTCTGGGAATGGAGAGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
CDS-3UTR GCA 90 bp CCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGGTGACCTGGAGTGGATaGCATCCACAAACGGCCCCC +
Preference number: 4 (lower is better)
Translates to: PPTESQTPTTWVPDRHSRVTWSG*HPQTAP
Trigger: GGGGGCCGTTTGTGGATGGCATCCACTCCAGGTCAC...CCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp ATCTCAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGGAGACCTTGGTGGCTGCTGTTGCTGCTaGTGGGGTTGCTGTCCTGAC +
Preference number: 4 (lower is better)
Translates to: ISNTYNLGARQTLTGDLGGCCCC*WGCCPD
Trigger: GTCAGGACAGCAACCCCAGCAGCAGCAACAGCAGCC...ACCAAGGTCTCCCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTGAGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp AAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATCACCCACTCGCCGGTCCTTCTCTaGCTGGGTCCCCAACTTAGC +
Preference number: 4 (lower is better)
Translates to: KHSPGTFPSSSISGSITHSPVLL*LGPQLS
Trigger: GCTAAGTTGGGGACCCAGGCAGAGAAGGACCGGCGA...GTGGGTGATAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp TCTGGTAGGGAGACAGAAACAGCGGGCTTGAGGACGGGTAGTTGCCTGCCCCAGGCACCTCCACCTCACTaGAGACACCTGAAGGTGATT +
Preference number: 4 (lower is better)
Translates to: SGRETETAGLRTGSCLPQAPPPH*RHLKVI
Trigger: AATCACCTTCAGGTGTCTCCAGTGAGGTGGAGGTGC...CTGGGGCAGGCAACTACCCGTCCTCAAGCCCGCTGTTTCTGTCTCCCTACCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
CDS-3UTR CCA 90 bp CACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATCACCCACCCTCCTCCATGCTGCCGCTaGTCACACGGGTCTCAATCT +
Preference number: 4 (lower is better)
Translates to: HSPGTFPSSSISGSITHPPPCCR*SHGSQS
Trigger: AGATTGAGACCCGTGTGACCAGCGGCAGCATGGAGG...AGGGTGGGTGATAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp CTCCACTCCTGGCTTTGTCCTGGAAGAGGGTTCGGGGTATTCTACACCCCTCGTCTCTTCCCGAGACACTaGCGACAGCAGCTTCCTCCT +
Preference number: 4 (lower is better)
Translates to: LHSWLCPGRGFGVFYTPRLFPRH*RQQLPP
Trigger: AGGAGGAAGCTGCTGTCGCCAGTGTCTCGGGAAGAG...ACGAGGGGTGTAGAATACCCCGAACCCTCTTCCAGGACAAAGCCAGGAGTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp TTTGTCCTCCCTACTGACCCTGAATGCACCTGGCTCCCCAAGTGCTACCTAGGACTAGCCGCAGCGTCCTaGGTGAGGAAGGAGGAGAAG +
Preference number: 4 (lower is better)
Translates to: FVLPTDPECTWLPKCYLGLAAAS*VRKEEK
Trigger: CTTCTCCTCCTTCCTCACCCAGGACGCTGCGGCTAG...TCCTAGGTAGCACTTGGGGAGCCAGGTGCATTCAGGGTCAGTAGGGAGGACAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp GCAAGACTTGCAGGCAAGAGCTACAGACACTGGAGATTGGGGTTTGGGGAGGAGCTAGCCGCAGCGTCCTaGGTGAGGAAGGAGGAGAAG +
Preference number: 4 (lower is better)
Translates to: ARLAGKSYRHWRLGFGEELAAAS*VRKEEK
Trigger: CTTCTCCTCCTTCCTCACCCAGGACGCTGCGGCTAG...CTCCTCCCCAAACCCCAATCTCCAGTGTCTGTAGCTCTTGCCTGCAAGTCTTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp CAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGGAGACCTTGGTCACATGCTGTTGCTGCTGCTaGGGTTGCTGTCCTGACCCT +
Preference number: 4 (lower is better)
Translates to: QTPTTWVPDRHSRETLVTCCCCC*GCCPDP
Trigger: AGGGTCAGGACAGCAACCCCAGCAGCAGCAACAGCA...TGTGACCAAGGTCTCCCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp CCTGATGAGCCCATAGTCCAGACCAAAACAGATCCGGAAGAGGGAAGGTGGCCAGCATCCCGACTCAGCTaGATCAGCCTGCCCTTCTCC +
Preference number: 4 (lower is better)
Translates to: PDEPIVQTKTDPEEGRWPASRLS*ISLPFS
Trigger: GGAGAAGGGCAGGCTGATCCAGCTGAGTCGGGATGC...TGGCCACCTTCCCTCTTCCGGATCTGTTTTGGTCTGGACTATGGGCTCATCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp CCGGTCACAAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTAAGTGACACCATCTCCTaGATGGCCAGGCGGAGCTTG +
Preference number: 4 (lower is better)
Translates to: PVTSTAQALSRPLPFRVLSDTIS*MARRSL
Trigger: CAAGCTCCGCCTGGCCATCCAGGAGATGGTGTCACT...TAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTTGTGACCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp CAAAGCAGCTACTCCAGTCACCTCCAGGATGGCACTGTACTGCCGGTCACAAGCGCTACCAAAGTTTCCTaGCTCTCCCGAAGGGACTCC +
Preference number: 4 (lower is better)
Translates to: QSSYSSHLQDGTVLPVTSATKVS*LSRRDS
Trigger: GGAGTCCCTTCGGGAGAGTCAGGAAACTTTGGTAGC...GCTTGTGACCGGCAGTACAGTGCCATCCTGGAGGTGACTGGAGTAGCTGCTTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp TTAGCCAAACTTCCCTCTGCTGAGCACAAGGCTCGGCATCCTTTTCAGACAGGGGCAGATACCTGCTGGTaGGCTCCTGCCAACTGCTCC +
Preference number: 4 (lower is better)
Translates to: LAKLPSAEHKARHPFQTGADTCW*APANCS
Trigger: GGAGCAGTTGGCAGGAGCTCACCAGCAGGTATCTGC...CCCTGTCTGAAAAGGATGCCGAGCCTTGTGCTCAGCAGAGGGAAGTTTGGCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
CDS-3UTR TCA 90 bp GCACAGAGTTTCTACCTTAGTCTTCCTCAGCTCCACTCCTGGCTTTGTCCTGGATCTCGGAGGTCCCGCTaGTGCTTGCTGCTCAGCTCC +
Preference number: 4 (lower is better)
Translates to: AQSFYLSLPQLHSWLCPGSRRSR*CLLLSS
Trigger: GGAGCTGAGCAGCAAGCATCAGCGGGACCTCCGAGA...TCCAGGACAAAGCCAGGAGTGGAGCTGAGGAAGACTAAGGTAGAAACTCTGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GGCAGGGAGAGCTTGGGTCACTGGTGGACTCTCCAGAGAAAACAGATATTGACACGCTGGGCAGGGTCATaGCCCCCATTCGGTCCAGAT +
Preference number: 4 (lower is better)
Translates to: GRESLGHWWTLQRKQILTRWAGS*PPFGPD
Trigger: ATCTGGACCGAATGGGGGTCATGACCCTGCCCAGCG...TGTCAATATCTGTTTTCTCTGGAGAGTCCACCAGTGACCCAAGCTCTCCCTGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR GCA 90 bp CTGAGCCAATACAGTACTGAGAAGGGACCTGGTTTGACACAGGAGGCTGGCAGGCTGCTGGTGAGCTCCTaGCAACTGCTCCTCCAAGGT +
Preference number: 4 (lower is better)
Translates to: LSQYSTEKGPGLTQEAGRLLVSS*QLLLQG
Trigger: ACCTTGGAGGAGCAGTTGGCAGGAGCTCACCAGCAG...CCTGCCAGCCTCCTGTGTCAAACCAGGTCCCTTCTCAGTACTGTATTGGCTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
CDS-3UTR GCA 90 bp ATCTCAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGGAGACCTTGGTGGTCCCGCTGATGCTTaGTGCTCAGCTCCTCTGACT +
Preference number: 4 (lower is better)
Translates to: ISNTYNLGARQTLTGDLGGPADA*CSAPLT
Trigger: AGTCAGAGGAGCTGAGCAGCAAGCATCAGCGGGACC...ACCAAGGTCTCCCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTGAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp CTGAGCCAATACAGTACTGAGAAGGGACCTGGTTTGACACAGGAGGCTGGCAGGAGCAGCTCCTGCAGATaGCGGGCTTTCTCCTCACAC +
Preference number: 4 (lower is better)
Translates to: LSQYSTEKGPGLTQEAGRSSSCR*RAFSSH
Trigger: GTGTGAGGAGAAAGCCCGGCATCTGCAGGAGCTGCT...CCTGCCAGCCTCCTGTGTCAAACCAGGTCCCTTCTCAGTACTGTATTGGCTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR GCA 90 bp GCTGTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGGCAGAGTCTCTGCCTTaGGCATGGTCTGCTGCAACT +
Preference number: 4 (lower is better)
Translates to: AVLPSLLQNLKHLQPGCPAESLP*AWSAAT
Trigger: AGTTGCAGCAGACCATGCGCAAGGCAGAGACTCTGC...CGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp TGTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACAGTCCTGGCTGCTGTTaGTGCTGCTGGGGTTGCTGT +
Preference number: 4 (lower is better)
Translates to: CPSLPPTESQTPTTWVPDSPGCC*CCWGCC
Trigger: ACAGCAACCCCAGCAGCAGCAACAGCAGCCAGGACT...GTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp CAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGGAGACCTTGGTCACACTCTGTGTGGGGATCTaGAGAACCAAGGCCAGTGTG +
Preference number: 4 (lower is better)
Translates to: QTPTTWVPDRHSRETLVTLCVGI*RTKASV
Trigger: CACACTGGCCTTGGTTCTGCAGATCCCCACACAGAG...TGTGACCAAGGTCTCCCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GGTTCTCTCGCTCTAACTAGTTCATGTTCTACTCAGCTGCTTCTCTCTCCATTCGGGGCAGGTGGAGGCTaGAGCGGACCCAGCGTGGAC +
Preference number: 4 (lower is better)
Translates to: GSLALTSSCSTQLLLSPFGAGGG*SGPSVD
Trigger: GTCCACGCTGGGTCCGCTGCAGCCTCCACCTGCCCC...GAATGGAGAGAGAAGCAGCTGAGTAGAACATGAACTAGTTAGAGCGAGAGAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp CCGGTCACAAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATCAGCTGCTCAAAGTTaGCCTCAGCATCGGCACCGT +
Preference number: 4 (lower is better)
Translates to: PVTSTAQALSRPLPFRVLSAAQS*PQHRHR
Trigger: ACGGTGCCGATGCTGAGGCCAACTTTGAGCAGCTGA...TAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTTGTGACCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp TGTACTGCCGGTCACAAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGAGCCGGCTCTGTGTaGCTACCAAAGTTTCCTGAC +
Preference number: 4 (lower is better)
Translates to: CTAGHKHSPGTFPSSSISGAGSV*LPKFPD
Trigger: GTCAGGAAACTTTGGTAGCCACACAGAGCCGGCTCC...CGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTTGTGACCGGCAGTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GCTGTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGCAGCTCGAAGCTCAGTaGACTCCTTCTCCTCCTGGA +
Preference number: 4 (lower is better)
Translates to: AVLPSLLQNLKHLQPGCPQLEAQ*TPSPPG
Trigger: TCCAGGAGGAGAAGGAGTCCACTGAGCTTCGAGCTG...CGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp AGGGCTCCTTCCATCTTAGGACTGGCCCTTCTCTATAACTCCACTATTCAGGACGCGGCCACTGAGCGGTaGAGATGCACTGGCCAGGGA +
Preference number: 4 (lower is better)
Translates to: RAPSILGLALLYNSTIQDAATER*RCTGQG
Trigger: TCCCTGGCCAGTGCATCTCCACCGCTCAGTGGCCGC...GTCCTGAATAGTGGAGTTATAGAGAAGGGCCAGTCCTAAGATGGAAGGAGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp CACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATCACCCACCCTATTCGGTCCAGATCCTaGGCAGCACTTCGGGAAGTG +
Preference number: 4 (lower is better)
Translates to: HSPGTFPSSSISGSITHPIRSRS*AALREV
Trigger: CACTTCCCGAAGTGCTGCCCAGGATCTGGACCGAAT...AGGGTGGGTGATAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GGAAGCACAAAAGGCCATCAGGCCATCTCTCTAGGCAAGGGGCTGAAGAGTTCCCTCTTCCCGAGACACTaGCGACAGCAGCTTCCTCCT +
Preference number: 4 (lower is better)
Translates to: GSTKGHQAISLGKGLKSSLFPRH*RQQLPP
Trigger: AGGAGGAAGCTGCTGTCGCCAGTGTCTCGGGAAGAG...GGAACTCTTCAGCCCCTTGCCTAGAGAGATGGCCTGATGGCCTTTTGTGCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp CTGAGCCAATACAGTACTGAGAAGGGACCTGGTTTGACACAGGAGGCTGGCAGGCGGTCCTTCTCTGCCTaGGTCCCCAACTTAGCAGGT +
Preference number: 4 (lower is better)
Translates to: LSQYSTEKGPGLTQEAGRRSFSA*VPNLAG
Trigger: ACCTGCTAAGTTGGGGACCCAGGCAGAGAAGGACCG...CCTGCCAGCCTCCTGTGTCAAACCAGGTCCCTTCTCAGTACTGTATTGGCTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp ATCTCAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGGAGACCTTGGTAGTGACACCATCTCCTaGATGGCCAGGCGGAGCTTG +
Preference number: 4 (lower is better)
Translates to: ISNTYNLGARQTLTGDLGSDTIS*MARRSL
Trigger: CAAGCTCCGCCTGGCCATCCAGGAGATGGTGTCACT...ACCAAGGTCTCCCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTGAGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp TCTGGTAGGGAGACAGAAACAGCGGGCTTGAGGACGGGTAGTTGCCTGCCCCAGTCCTTGATCTCATGCTaGCTCTCTTCCCGCCTCTTT +
Preference number: 4 (lower is better)
Translates to: SGRETETAGLRTGSCLPQSLISC*LSSRLF
Trigger: AAAGAGGCGGGAAGAGAGCCAGCATGAGATCAAGGA...CTGGGGCAGGCAACTACCCGTCCTCAAGCCCGCTGTTTCTGTCTCCCTACCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp GGGTTTGGGGAGGAGGGAGTGATACTGAGAGAGGAGGTGGCAAAACCACTCAGACCTGGGTGCTCTGTGTaGGGATCTGCAGAACCAAGG +
Preference number: 4 (lower is better)
Translates to: GFGEEGVILREEVAKPLRPGCSV*GSAEPR
Trigger: CCTTGGTTCTGCAGATCCCCACACAGAGCACCCAGG...TCTGAGTGGTTTTGCCACCTCCTCTCTCAGTATCACTCCCTCCTCCCCAAACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp TGTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACCCTGGGTGCTCTGTGTaGGGATCTGCAGAACCAAGG +
Preference number: 4 (lower is better)
Translates to: CPSLPPTESQTPTTWVPDPGCSV*GSAEPR
Trigger: CCTTGGTTCTGCAGATCCCCACACAGAGCACCCAGG...GTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR CAA 72 bp ACAACCTGGGTGCCCGACAGACACTCACGGGAGACCTaGGTCACATCCTCCAGAGACTTACAAAGGGGGAAC +
Preference number: 4 (lower is better)
Translates to: TTWVPDRHSRET*VTSSRDLQRGN
Trigger: GTTCCCCCTTTGTAAGTCTCTGGAGGATGTGACCAAGGTCTCCCGTGAGTGTCTGTCGGGCACCCAGGTTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp TCCTTTTCAGACAGGGAGTTCTGGCTCATTTCTCCACCTGTTAGCTTGGCGCCTGGGGGTCCCCCTCATTaGTTGTGGGCATCACCTCAC +
Preference number: 4 (lower is better)
Translates to: SFSDREFWLISPPVSLAPGGPPH*LWASPH
Trigger: GTGAGGTGATGCCCACAATCAATGAGGGGGACCCCC...AGGCGCCAAGCTAACAGGTGGAGAAATGAGCCAGAACTCCCTGTCTGAAAAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
CDS-3UTR TCA 90 bp TCTCTCTCCATTCCCAGAGGCCTGTCTGGTAGGGAGACAGAAACAGCGGGCTTGTCCTCAATGTTGCCATaGCGTTCCTCAGCCTTGGTG +
Preference number: 4 (lower is better)
Translates to: SLSIPRGLSGRETETAGLSSMLP*RSSALV
Trigger: CACCAAGGCTGAGGAACGTCATGGCAACATTGAGGA...CAAGCCCGCTGTTTCTGTCTCCCTACCAGACAGGCCTCTGGGAATGGAGAGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR TCA 90 bp CAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGGAGACCTTGGTCACATCCTCAATGTTGCCATaGCGTTCCTCAGCCTTGGTG +
Preference number: 4 (lower is better)
Translates to: QTPTTWVPDRHSRETLVTSSMLP*RSSALV
Trigger: CACCAAGGCTGAGGAACGTCATGGCAACATTGAGGA...TGTGACCAAGGTCTCCCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GGAGGGTATAGGGACACACAAGGGAGCCTGCCTCAGTCCACTTTAGATTTCTTACCGGTCCACGGTGTCTaGCAGCCGCTTGTTGTGGTC +
Preference number: 4 (lower is better)
Translates to: GGYRDTQGSLPQSTLDFLPVHGV*QPLVVV
Trigger: GACCACAACAAGCGGCTGTCAGACACCGTGGACCGG...TAAGAAATCTAAAGTGGACTGAGGCAGGCTCCCTTGTGTGTCCCTATACCCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GATGATGAAGGAGTGGATGAGCATATTCTGAGATCCCGGGCAACTGGAAAATCAGCAGCTGGGTCAGGTTaGGGGCCTCCATGCTGCCGC +
Preference number: 4 (lower is better)
Translates to: DDEGVDEHILRSRATGKSAAGSG*GPPCCR
Trigger: GCGGCAGCATGGAGGCCCTCAACCTGACCCAGCTGC...TGATTTTCCAGTTGCCCGGGATCTCAGAATATGCTCATCCACTCCTTCATCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp AAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCCACCGTGCTGCCCGCAGCGTCCTGGGTaGGGAAGGAGGAGAAGTCTC +
Preference number: 4 (lower is better)
Translates to: KRGAIDISHKSALSPPCCPQRPG*GRRRSL
Trigger: GAGACTTCTCCTCCTTCCTCACCCAGGACGCTGCGG...GCAGCACGGTGGGGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GGGAGCCTGCCTCAGTCCACTTTAGATTTCTTAGACCTGGGACATGAGTCACTACTCTTGCCCTCCTCTTaGCTCAGGCCAGGGTGGCCA +
Preference number: 4 (lower is better)
Translates to: GSLPQSTLDFLDLGHESLLLPSS*LRPGWP
Trigger: TGGCCACCCTGGCCTGAGTCAAGAGGAGGGCAAGAG...TAGTGACTCATGTCCCAGGTCTAAGAAATCTAAAGTGGACTGAGGCAGGCTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GCATCCTTTTCAGACAGGGAGTTCTGGCTCATTTCTCCACCTGTTAGCTTGGCGGGCCAATGGATGACTTaGTGCCCTTGCGCTTGGCGC +
Preference number: 4 (lower is better)
Translates to: ASFSDREFWLISPPVSLAGQWMT*CPCAWR
Trigger: GCGCCAAGCGCAAGGGCATCAAGTCATCCATTGGCC...CGCCAAGCTAACAGGTGGAGAAATGAGCCAGAACTCCCTGTCTGAAAAGGATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR TCA 90 bp CCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGCACCCAGACATTCCCTaGAGAAGTCCTGGAGGTAGG +
Preference number: 4 (lower is better)
Translates to: PPTESQTPTTWVPDRHSRHPDIP*RSPGGR
Trigger: CCTACCTCCAGGACTTCTTCAGGGAATGTCTGGGTG...CCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp TGTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACGCCTTGCGCATGGTCTaGTGCAACTTCTGCTCTGCT +
Preference number: 4 (lower is better)
Translates to: CPSLPPTESQTPTTWVPDALRMV*CNFCSA
Trigger: AGCAGAGCAGAAGTTGCAGCAGACCATGCGCAAGGC...GTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp CTGAGCCAATACAGTACTGAGAAGGGACCTGGTTTGACACAGGAGGCTGGCAGGAGCCTTGGTGAGGGCTaGGATTCTCTGAGACAGCTC +
Preference number: 4 (lower is better)
Translates to: LSQYSTEKGPGLTQEAGRSLGEG*DSLRQL
Trigger: GAGCTGTCTCAGAGAATCGCAGCCCTCACCAAGGCT...CCTGCCAGCCTCCTGTGTCAAACCAGGTCCCTTCTCAGTACTGTATTGGCTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR GCA 90 bp TTTGTCCTCCCTACTGACCCTGAATGCACCTGGCTCCCCAAGTGCTACCTAGGAAGCCTTGGTGAGGGCTaGGATTCTCTGAGACAGCTC +
Preference number: 4 (lower is better)
Translates to: FVLPTDPECTWLPKCYLGSLGEG*DSLRQL
Trigger: GAGCTGTCTCAGAGAATCGCAGCCCTCACCAAGGCT...TCCTAGGTAGCACTTGGGGAGCCAGGTGCATTCAGGGTCAGTAGGGAGGACAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR GCA 90 bp GCAAGACTTGCAGGCAAGAGCTACAGACACTGGAGATTGGGGTTTGGGGAGGAGAGCCTTGGTGAGGGCTaGGATTCTCTGAGACAGCTC +
Preference number: 4 (lower is better)
Translates to: ARLAGKSYRHWRLGFGEESLGEG*DSLRQL
Trigger: GAGCTGTCTCAGAGAATCGCAGCCCTCACCAAGGCT...CTCCTCCCCAAACCCCAATCTCCAGTGTCTGTAGCTCTTGCCTGCAAGTCTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GGCAGGGAGAGCTTGGGTCACTGGTGGACTCTCCAGAGAAAACAGATATTGACAGGCTGCTGTTGCTGCTaGTGGGGTTGCTGTCCTGAC +
Preference number: 4 (lower is better)
Translates to: GRESLGHWWTLQRKQILTGCCCC*WGCCPD
Trigger: GTCAGGACAGCAACCCCAGCAGCAGCAACAGCAGCC...TGTCAATATCTGTTTTCTCTGGAGAGTCCACCAGTGACCCAAGCTCTCCCTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR GCA 90 bp CCACCTGTTAGCTTGGCGCCTGTTCAGAATCCCAGTGATGAAATGGCAAAGCAGGGGTCTGGGCCCAGCTaGCCTCCTCACTGTCTGTTT +
Preference number: 4 (lower is better)
Translates to: PPVSLAPVQNPSDEMAKQGSGPS*PPHCLF
Trigger: AAACAGACAGTGAGGAGGGCAGCTGGGCCCAGACCC...CTGCTTTGCCATTTCATCACTGGGATTCTGAACAGGCGCCAAGCTAACAGGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
CDS-3UTR GCA 90 bp GTGGATGAGCATATTCTGAGATCCCGGGCAACTGGAAAATCACAGAGGAGAGACCTTGGCGGGCCTGGGTaGTCTGTGTGGGGATCTGCA +
Preference number: 4 (lower is better)
Translates to: VDEHILRSRATGKSQRRDLGGPG*SVWGSA
Trigger: TGCAGATCCCCACACAGAGCACCCAGGCCCGCCAAG...GTCTCTCCTCTGTGATTTTCCAGTTGCCCGGGATCTCAGAATATGCTCATCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp AAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATCACCCACTCAGCTGCTCAAAGTTaGCCTCAGCATCGGCACCGT +
Preference number: 4 (lower is better)
Translates to: KHSPGTFPSSSISGSITHSAAQS*PQHRHR
Trigger: ACGGTGCCGATGCTGAGGCCAACTTTGAGCAGCTGA...GTGGGTGATAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GCAAGACTTGCAGGCAAGAGCTACAGACACTGGAGATTGGGGTTTGGGGAGGAGGGAGCCGGCTCTGTGTaGCTACCAAAGTTTCCTGAC +
Preference number: 4 (lower is better)
Translates to: ARLAGKSYRHWRLGFGEEGAGSV*LPKFPD
Trigger: GTCAGGAAACTTTGGTAGCCACACAGAGCCGGCTCC...CTCCTCCCCAAACCCCAATCTCCAGTGTCTGTAGCTCTTGCCTGCAAGTCTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp TGTACTGCCGGTCACAAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGCACCTCCACCTCACTaGAGACACCTGAAGGTGATT +
Preference number: 4 (lower is better)
Translates to: CTAGHKHSPGTFPSSSISAPPPH*RHLKVI
Trigger: AATCACCTTCAGGTGTCTCCAGTGAGGTGGAGGTGC...CGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTTGTGACCGGCAGTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp TGTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACGCTTTCTCCTCACACTaGCGGTGCAGGGATTCCTTG +
Preference number: 4 (lower is better)
Translates to: CPSLPPTESQTPTTWVPDAFSSH*RCRDSL
Trigger: CAAGGAATCCCTGCACCGCCAGTGTGAGGAGAAAGC...GTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp CCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGACCCTTGCCAGCTCCTaGTTCTTCTCTTCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: PPTESQTPTTWVPDRHSRTLASS*FFSSSC
Trigger: GCAGCTGGAAGAGAAGAACCAGGAGCTGGCAAGGGT...CCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GCAAGACTTGCAGGCAAGAGCTACAGACACTGGAGATTGGGGTTTGGGGAGGAGACCCTTGCCAGCTCCTaGTTCTTCTCTTCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: ARLAGKSYRHWRLGFGEETLASS*FFSSSC
Trigger: GCAGCTGGAAGAGAAGAACCAGGAGCTGGCAAGGGT...CTCCTCCCCAAACCCCAATCTCCAGTGTCTGTAGCTCTTGCCTGCAAGTCTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GTGGATGAGCATATTCTGAGATCCCGGGCAACTGGAAAATCACAGAGGAGAGACCCTCGACCCTTCAGCTaGTCCACCTCTTGGCGCAGC +
Preference number: 4 (lower is better)
Translates to: VDEHILRSRATGKSQRRDPRPFS*STSWRS
Trigger: GCTGCGCCAAGAGGTGGACCAGCTGAAGGGTCGAGG...GTCTCTCCTCTGTGATTTTCCAGTTGCCCGGGATCTCAGAATATGCTCATCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp CTCCACTCCTGGCTTTGTCCTGGAAGAGGGTTCGGGGTATTCTACACCCCTCGTGACTCCTTCTCCTCCTaGATCATCCTGATCTCCTGG +
Preference number: 4 (lower is better)
Translates to: LHSWLCPGRGFGVFYTPRDSFSS*IILISW
Trigger: CCAGGAGATCAGGATGATCCAGGAGGAGAAGGAGTC...ACGAGGGGTGTAGAATACCCCGAACCCTCTTCCAGGACAAAGCCAGGAGTGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GGGTTTGGGGAGGAGGGAGTGATACTGAGAGAGGAGGTGGCAAAACCACTCAGACAGCTCGAAGCTCAGTaGACTCCTTCTCCTCCTGGA +
Preference number: 4 (lower is better)
Translates to: GFGEEGVILREEVAKPLRQLEAQ*TPSPPG
Trigger: TCCAGGAGGAGAAGGAGTCCACTGAGCTTCGAGCTG...TCTGAGTGGTTTTGCCACCTCCTCTCTCAGTATCACTCCCTCCTCCCCAAACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp ATTTCTCCACCTGTTAGCTTGGCGCCTGTTCAGAATCCCAGTGATGAAATGGCAGCGGCCACTGAGCGGTaGAGATGCACTGGCCAGGGA +
Preference number: 4 (lower is better)
Translates to: ISPPVSLAPVQNPSDEMAAATER*RCTGQG
Trigger: TCCCTGGCCAGTGCATCTCCACCGCTCAGTGGCCGC...TGCCATTTCATCACTGGGATTCTGAACAGGCGCCAAGCTAACAGGTGGAGAAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp CACTGGTGGACTCTCCAGAGAAAACAGATATTGACAGTGAGGCAGGGCCACACCTTGTGCAGGGAGTCCTaGCTGCTGTTGCTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: HWWTLQRKQILTVRQGHTLCRES*LLLLLL
Trigger: CAGCAGCAGCAACAGCAGCCAGGACTCCCTGCACAA...GGTGTGGCCCTGCCTCACTGTCAATATCTGTTTTCTCTGGAGAGTCCACCAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp GCTGTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGGAACCACCTGGTCATTaGTCCAGACCAGCACATCCT +
Preference number: 4 (lower is better)
Translates to: AVLPSLLQNLKHLQPGCPEPPGH*SRPAHP
Trigger: AGGATGTGCTGGTCTGGACCAATGACCAGGTGGTTC...CGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR CAA 72 bp GGGCCCAAAGCTCTGGGGTCCATTCCTCCCACACATTaGGGGTTCTGTGTCAGCTTGGGCACAGAGTTTCTA +
Preference number: 4 (lower is better)
Translates to: GPKALGSIPPTH*GFCVSLGTEFL
Trigger: TAGAAACTCTGTGCCCAAGCTGACACAGAACCCCAAATGTGTGGGAGGAATGGACCCCAGAGCTTTGGGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp CTGAGCCAATACAGTACTGAGAAGGGACCTGGTTTGACACAGGAGGCTGGCAGGGCTCAAATAGTGACTTaGGGGCCTTCAGCACCTCCA +
Preference number: 4 (lower is better)
Translates to: LSQYSTEKGPGLTQEAGRAQIVT*GPSAPP
Trigger: TGGAGGTGCTGAAGGCCCTCAAGTCACTATTTGAGC...CCTGCCAGCCTCCTGTGTCAAACCAGGTCCCTTCTCAGTACTGTATTGGCTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
CDS-3UTR TCA 90 bp TGTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACGCTCAAATAGTGACTTaGGGGCCTTCAGCACCTCCA +
Preference number: 4 (lower is better)
Translates to: CPSLPPTESQTPTTWVPDAQIVT*GPSAPP
Trigger: TGGAGGTGCTGAAGGCCCTCAAGTCACTATTTGAGC...GTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GGAAGCACAAAAGGCCATCAGGCCATCTCTCTAGGCAAGGGGCTGAAGAGTTCCTCCTCAATGTTGCCATaGCGTTCCTCAGCCTTGGTG +
Preference number: 4 (lower is better)
Translates to: GSTKGHQAISLGKGLKSSSSMLP*RSSALV
Trigger: CACCAAGGCTGAGGAACGTCATGGCAACATTGAGGA...GGAACTCTTCAGCCCCTTGCCTAGAGAGATGGCCTGATGGCCTTTTGTGCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp AGGGCTCCTTCCATCTTAGGACTGGCCCTTCTCTATAACTCCACTATTCAGGACGAGATGACATCGACCTaGGTGCCCACCAAGCCCCCA +
Preference number: 4 (lower is better)
Translates to: RAPSILGLALLYNSTIQDEMTST*VPTKPP
Trigger: TGGGGGCTTGGTGGGCACTCAGGTCGATGTCATCTC...GTCCTGAATAGTGGAGTTATAGAGAAGGGCCAGTCCTAAGATGGAAGGAGCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR TCA 90 bp ATTTCTCCACCTGTTAGCTTGGCGCCTGTTCAGAATCCCAGTGATGAAATGGCACGCTGGGCAGGGTCATaGCCCCCATTCGGTCCAGAT +
Preference number: 4 (lower is better)
Translates to: ISPPVSLAPVQNPSDEMARWAGS*PPFGPD
Trigger: ATCTGGACCGAATGGGGGTCATGACCCTGCCCAGCG...TGCCATTTCATCACTGGGATTCTGAACAGGCGCCAAGCTAACAGGTGGAGAAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR TCA 90 bp GGGAGCCTGCCTCAGTCCACTTTAGATTTCTTAGACCTGGGACATGAGTCACTAGGCCAATGGATGACTTaGTGCCCTTGCGCTTGGCGC +
Preference number: 4 (lower is better)
Translates to: GSLPQSTLDFLDLGHESLGQWMT*CPCAWR
Trigger: GCGCCAAGCGCAAGGGCATCAAGTCATCCATTGGCC...TAGTGACTCATGTCCCAGGTCTAAGAAATCTAAAGTGGACTGAGGCAGGCTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp AAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCCACCGTGCTGCTGTGCAGGGCATTGCTaGTGCCGATCTCCCGCTGGA +
Preference number: 4 (lower is better)
Translates to: KRGAIDISHKSALSPPCCCAGHC*CRSPAG
Trigger: TCCAGCGGGAGATCGGCATCAGCAATGCCCTGCACA...GCAGCACGGTGGGGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp TTAGCCAAACTTCCCTCTGCTGAGCACAAGGCTCGGCATCCTTTTCAGACAGGGCACCCAGACATTCCCTaGAGAAGTCCTGGAGGTAGG +
Preference number: 4 (lower is better)
Translates to: LAKLPSAEHKARHPFQTGHPDIP*RSPGGR
Trigger: CCTACCTCCAGGACTTCTTCAGGGAATGTCTGGGTG...CCCTGTCTGAAAAGGATGCCGAGCCTTGTGCTCAGCAGAGGGAAGTTTGGCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR TCA 90 bp AAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATCACCCACAACTGTCCACCATCTTaGGATGGACACGCAGGTCCT +
Preference number: 4 (lower is better)
Translates to: KHSPGTFPSSSISGSITHNCPPS*DGHAGP
Trigger: AGGACCTGCGTGTCCATCTCAAGATGGTGGACAGTT...GTGGGTGATAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp CCGGTCACAAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTAGCCTCTTCAGACACATaGTGCCATACTGAAGACTGG +
Preference number: 4 (lower is better)
Translates to: PVTSTAQALSRPLPFRVLASSDT*CHTEDW
Trigger: CCAGTCTTCAGTATGGCATCATGTGTCTGAAGAGGC...TAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTTGTGACCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp ATCTCAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGGAGACCTTGGTATAGACTGGACCCAGTaGACCACCTGGTCATTGGTC +
Preference number: 4 (lower is better)
Translates to: ISNTYNLGARQTLTGDLGIDWTQ*TTWSLV
Trigger: GACCAATGACCAGGTGGTTCACTGGGTCCAGTCTAT...ACCAAGGTCTCCCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTGAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp CCTGATGAGCCCATAGTCCAGACCAAAACAGATCCGGAAGAGGGAAGGTGGCCAATAGACTGGACCCAGTaGACCACCTGGTCATTGGTC +
Preference number: 4 (lower is better)
Translates to: PDEPIVQTKTDPEEGRWPIDWTQ*TTWSLV
Trigger: GACCAATGACCAGGTGGTTCACTGGGTCCAGTCTAT...TGGCCACCTTCCCTCTTCCGGATCTGTTTTGGTCTGGACTATGGGCTCATCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp TCTACTCAGCTGCTTCTCTCTCCATTCCCAGAGGCCTGTCTGGTAGGGAGACAGGCTGCTCCCGACACATaGTTAGCTCCCGAGTTAAAG +
Preference number: 4 (lower is better)
Translates to: STQLLLSPFPEACLVGRQAAPDT*LAPELK
Trigger: CTTTAACTCGGGAGCTAAGCATGTGTCGGGAGCAGC...CTGTCTCCCTACCAGACAGGCCTCTGGGAATGGAGAGAGAAGCAGCTGAGTAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
CDS-3UTR GCA 90 bp TGTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACGCTGCTCCCGACACATaGTTAGCTCCCGAGTTAAAG +
Preference number: 4 (lower is better)
Translates to: CPSLPPTESQTPTTWVPDAAPDT*LAPELK
Trigger: CTTTAACTCGGGAGCTAAGCATGTGTCGGGAGCAGC...GTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp CCGGTCACAAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTAGAAGGTGATTGGGCCTaGCGTTTTACCACTGTCATC +
Preference number: 4 (lower is better)
Translates to: PVTSTAQALSRPLPFRVLEGDWA*RFTTVI
Trigger: GATGACAGTGGTAAAACGGCAGGCCCAATCACCTTC...TAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTTGTGACCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GCACAGAGTTTCTACCTTAGTCTTCCTCAGCTCCACTCCTGGCTTTGTCCTGGACTGCTGGTGAGCTCCTaGCAACTGCTCCTCCAAGGT +
Preference number: 4 (lower is better)
Translates to: AQSFYLSLPQLHSWLCPGLLVSS*QLLLQG
Trigger: ACCTTGGAGGAGCAGTTGGCAGGAGCTCACCAGCAG...TCCAGGACAAAGCCAGGAGTGGAGCTGAGGAAGACTAAGGTAGAAACTCTGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp TGTACTGCCGGTCACAAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGAGTCCCTTCCTCTTCTaGTACTCCATCCCGAATTCC +
Preference number: 4 (lower is better)
Translates to: CTAGHKHSPGTFPSSSISSPFLF*YSIPNS
Trigger: GGAATTCGGGATGGAGTAGCAGAAGAGGAAGGGACT...CGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTTGTGACCGGCAGTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GCATCCTTTTCAGACAGGGAGTTCTGGCTCATTTCTCCACCTGTTAGCTTGGCGTCCTCACACTGGCGGTaGAGGGATTCCTTGTTGGCC +
Preference number: 4 (lower is better)
Translates to: ASFSDREFWLISPPVSLASSHWR*RDSLLA
Trigger: GGCCAACAAGGAATCCCTGCACCGCCAGTGTGAGGA...CGCCAAGCTAACAGGTGGAGAAATGAGCCAGAACTCCCTGTCTGAAAAGGATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR GCA 90 bp TCCTTTTCAGACAGGGAGTTCTGGCTCATTTCTCCACCTGTTAGCTTGGCGCCTTCCTCACACTGGCGGTaGAGGGATTCCTTGTTGGCC +
Preference number: 4 (lower is better)
Translates to: SFSDREFWLISPPVSLAPSSHWR*RDSLLA
Trigger: GGCCAACAAGGAATCCCTGCACCGCCAGTGTGAGGA...AGGCGCCAAGCTAACAGGTGGAGAAATGAGCCAGAACTCCCTGTCTGAAAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR GCA 90 bp GCACAGAGTTTCTACCTTAGTCTTCCTCAGCTCCACTCCTGGCTTTGTCCTGGATCCTCACACTGGCGGTaGAGGGATTCCTTGTTGGCC +
Preference number: 4 (lower is better)
Translates to: AQSFYLSLPQLHSWLCPGSSHWR*RDSLLA
Trigger: GGCCAACAAGGAATCCCTGCACCGCCAGTGTGAGGA...TCCAGGACAAAGCCAGGAGTGGAGCTGAGGAAGACTAAGGTAGAAACTCTGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp CAAAGCAGCTACTCCAGTCACCTCCAGGATGGCACTGTACTGCCGGTCACAAGCGTCTGCTGCAACTTCTaGTCTGCTACTTCTAGCAGC +
Preference number: 4 (lower is better)
Translates to: QSSYSSHLQDGTVLPVTSVCCNF*SATSSS
Trigger: GCTGCTAGAAGTAGCAGAGCAGAAGTTGCAGCAGAC...GCTTGTGACCGGCAGTACAGTGCCATCCTGGAGGTGACTGGAGTAGCTGCTTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp TCAGACAGGGAGTTCTGGCTCATTTCTCCACCTGTTAGCTTGGCGCCTGTTCAGGCCTTGCGCATGGTCTaGTGCAACTTCTGCTCTGCT +
Preference number: 4 (lower is better)
Translates to: SDREFWLISPPVSLAPVQALRMV*CNFCSA
Trigger: AGCAGAGCAGAAGTTGCAGCAGACCATGCGCAAGGC...CTGAACAGGCGCCAAGCTAACAGGTGGAGAAATGAGCCAGAACTCCCTGTCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR GCA 90 bp TCAGACAGGGAGTTCTGGCTCATTTCTCCACCTGTTAGCTTGGCGCCTGTTCAGGCAGAGTCTCTGCCTTaGGCATGGTCTGCTGCAACT +
Preference number: 4 (lower is better)
Translates to: SDREFWLISPPVSLAPVQAESLP*AWSAAT
Trigger: AGTTGCAGCAGACCATGCGCAAGGCAGAGACTCTGC...CTGAACAGGCGCCAAGCTAACAGGTGGAGAAATGAGCCAGAACTCCCTGTCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR GCA 90 bp GCATCCTTTTCAGACAGGGAGTTCTGGCTCATTTCTCCACCTGTTAGCTTGGCGAGTCCTGGCTGCTGTTaGTGCTGCTGGGGTTGCTGT +
Preference number: 4 (lower is better)
Translates to: ASFSDREFWLISPPVSLASPGCC*CCWGCC
Trigger: ACAGCAACCCCAGCAGCAGCAACAGCAGCCAGGACT...CGCCAAGCTAACAGGTGGAGAAATGAGCCAGAACTCCCTGTCTGAAAAGGATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR GCA 90 bp AAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCCACCGTGCTGCTCGCCGGTCCTTCTCTaGCTGGGTCCCCAACTTAGC +
Preference number: 4 (lower is better)
Translates to: KRGAIDISHKSALSPPCCSPVLL*LGPQLS
Trigger: GCTAAGTTGGGGACCCAGGCAGAGAAGGACCGGCGA...GCAGCACGGTGGGGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GGAGGGTATAGGGACACACAAGGGAGCCTGCCTCAGTCCACTTTAGATTTCTTATCGCCGGTCCTTCTCTaGCTGGGTCCCCAACTTAGC +
Preference number: 4 (lower is better)
Translates to: GGYRDTQGSLPQSTLDFLSPVLL*LGPQLS
Trigger: GCTAAGTTGGGGACCCAGGCAGAGAAGGACCGGCGA...TAAGAAATCTAAAGTGGACTGAGGCAGGCTCCCTTGTGTGTCCCTATACCCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp TCCAGAAGGCCAATTAGTCCAAGCAGGACAGAGTCCGAAATGGCCTTTTATTGGCTTGGCGGGCCTGGGTaGTCTGTGTGGGGATCTGCA +
Preference number: 4 (lower is better)
Translates to: SRRPISPSRTESEMAFYWLGGPG*SVWGSA
Trigger: TGCAGATCCCCACACAGAGCACCCAGGCCCGCCAAG...CCAATAAAAGGCCATTTCGGACTCTGTCCTGCTTGGACTAATTGGCCTTCTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp CACTGGTGGACTCTCCAGAGAAAACAGATATTGACAGTGAGGCAGGGCCACACCGGTCATGGATGGATGTaGCTTCTCGCTGAGCAGCCA +
Preference number: 4 (lower is better)
Translates to: HWWTLQRKQILTVRQGHTGHGWM*LLAEQP
Trigger: TGGCTGCTCAGCGAGAAGCCACATCCATCCATGACC...GGTGTGGCCCTGCCTCACTGTCAATATCTGTTTTCTCTGGAGAGTCCACCAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp CAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGGAGACCTTGGTCACAGCAGGGATTCCTTGTTaGCCAGCTCATTCTCCAGTT +
Preference number: 4 (lower is better)
Translates to: QTPTTWVPDRHSRETLVTAGIPC*PAHSPV
Trigger: AACTGGAGAATGAGCTGGCCAACAAGGAATCCCTGC...TGTGACCAAGGTCTCCCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp TTTGTCCTCCCTACTGACCCTGAATGCACCTGGCTCCCCAAGTGCTACCTAGGAATGGCTTCCAGTCCTTaGCAGATTCATCCCTCAGCG +
Preference number: 4 (lower is better)
Translates to: FVLPTDPECTWLPKCYLGMASSP*QIHPSA
Trigger: CGCTGAGGGATGAATCTGCCAAGGACTGGAAGCCAT...TCCTAGGTAGCACTTGGGGAGCCAGGTGCATTCAGGGTCAGTAGGGAGGACAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp GGGAGCCTGCCTCAGTCCACTTTAGATTTCTTAGACCTGGGACATGAGTCACTACCCTGGCAGTGGCGATaGCTTCCAGTCCTTGGCAGA +
Preference number: 4 (lower is better)
Translates to: GSLPQSTLDFLDLGHESLPWQWR*LPVLGR
Trigger: TCTGCCAAGGACTGGAAGCCATCGCCACTGCCAGGG...TAGTGACTCATGTCCCAGGTCTAAGAAATCTAAAGTGGACTGAGGCAGGCTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp AGCCAATACAGTACTGAGAAGGGACCTGGTTTGACACAGGAGGCTGGCAGGGAGGACTCCTTCTCCTCCTaGATCATCCTGATCTCCTGG +
Preference number: 4 (lower is better)
Translates to: SQYSTEKGPGLTQEAGREDSFSS*IILISW
Trigger: CCAGGAGATCAGGATGATCCAGGAGGAGAAGGAGTC...CTCCCTGCCAGCCTCCTGTGTCAAACCAGGTCCCTTCTCAGTACTGTATTGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp TCCTTTTCAGACAGGGAGTTCTGGCTCATTTCTCCACCTGTTAGCTTGGCGCCTCCTCCATGCTGCCGCTaGTCACACGGGTCTCAATCT +
Preference number: 4 (lower is better)
Translates to: SFSDREFWLISPPVSLAPPPCCR*SHGSQS
Trigger: AGATTGAGACCCGTGTGACCAGCGGCAGCATGGAGG...AGGCGCCAAGCTAACAGGTGGAGAAATGAGCCAGAACTCCCTGTCTGAAAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp TCCTTTTCAGACAGGGAGTTCTGGCTCATTTCTCCACCTGTTAGCTTGGCGCCTTGCTGTTGCTGCTGCTaGGGTTGCTGTCCTGACCCT +
Preference number: 4 (lower is better)
Translates to: SFSDREFWLISPPVSLAPCCCCC*GCCPDP
Trigger: AGGGTCAGGACAGCAACCCCAGCAGCAGCAACAGCA...AGGCGCCAAGCTAACAGGTGGAGAAATGAGCCAGAACTCCCTGTCTGAAAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp CTGGCCCTTCTCTATAACTCCACTATTCAGGACCAAGGGTTCTCTCGCTCTAACGCATCCCGACTCAGCTaGATCAGCCTGCCCTTCTCC +
Preference number: 4 (lower is better)
Translates to: LALLYNSTIQDQGFSRSNASRLS*ISLPFS
Trigger: GGAGAAGGGCAGGCTGATCCAGCTGAGTCGGGATGC...GTTAGAGCGAGAGAACCCTTGGTCCTGAATAGTGGAGTTATAGAGAAGGGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp TCTCTCTCCATTCCCAGAGGCCTGTCTGGTAGGGAGACAGAAACAGCGGGCTTGCTTAGCAGGTACCATTaGTTCCTGCAGACTGAGCTC +
Preference number: 4 (lower is better)
Translates to: SLSIPRGLSGRETETAGLLSRYH*FLQTEL
Trigger: GAGCTCAGTCTGCAGGAACCAATGGTACCTGCTAAG...CAAGCCCGCTGTTTCTGTCTCCCTACCAGACAGGCCTCTGGGAATGGAGAGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp TGTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACGTGGGGCCATCCCATTaGGCAAAGGGCATTCCTTTT +
Preference number: 4 (lower is better)
Translates to: CPSLPPTESQTPTTWVPDVGPSH*AKGIPF
Trigger: AAAAGGAATGCCCTTTGCCCAATGGGATGGCCCCAC...GTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp CCACCTGTTAGCTTGGCGCCTGTTCAGAATCCCAGTGATGAAATGGCAAAGCAGAGTGACACCATCTCCTaGATGGCCAGGCGGAGCTTG +
Preference number: 4 (lower is better)
Translates to: PPVSLAPVQNPSDEMAKQSDTIS*MARRSL
Trigger: CAAGCTCCGCCTGGCCATCCAGGAGATGGTGTCACT...CTGCTTTGCCATTTCATCACTGGGATTCTGAACAGGCGCCAAGCTAACAGGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
3UTR CAA 72 bp TTGGGTCACTGGTGGACTCTCCAGAGAAAACAGATATaGACAGTGAGGCAGGGCCACACCATGACAGCAGCC +
Preference number: 4 (lower is better)
Translates to: LGHWWTLQRKQI*TVRQGHTMTAA
Trigger: GGCTGCTGTCATGGTGTGGCCCTGCCTCACTGTCAATATCTGTTTTCTCTGGAGAGTCCACCAGTGACCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR TCA 90 bp AGGCCAATTAGTCCAAGCAGGACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTAGGGCTGCGATTCTCTaGGACAGCTCAGCCTCCACC +
Preference number: 4 (lower is better)
Translates to: RPISPSRTESEMAFYWKGRAAIL*DSSAST
Trigger: GGTGGAGGCTGAGCTGTCTCAGAGAATCGCAGCCCT...ACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCCTGCTTGGACTAATTGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp AGGCCAATTAGTCCAAGCAGGACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTCAGCCATTCGCTCCTTaGGGTGGAGCTGCAGGCGTT +
Preference number: 4 (lower is better)
Translates to: RPISPSRTESEMAFYWKGQPFAP*GGAAGV
Trigger: AACGCCTGCAGCTCCACCTCAAGGAGCGAATGGCTG...ACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCCTGCTTGGACTAATTGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp TCCAGAAGGCCAATTAGTCCAAGCAGGACAGAGTCCGAAATGGCCTTTTATTGGGAGATGACATCGACCTaGGTGCCCACCAAGCCCCCA +
Preference number: 4 (lower is better)
Translates to: SRRPISPSRTESEMAFYWEMTST*VPTKPP
Trigger: TGGGGGCTTGGTGGGCACTCAGGTCGATGTCATCTC...CCAATAAAAGGCCATTTCGGACTCTGTCCTGCTTGGACTAATTGGCCTTCTGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp AGGCCAATTAGTCCAAGCAGGACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTTGTGCAGGGCATTGCTaGTGCCGATCTCCCGCTGGA +
Preference number: 4 (lower is better)
Translates to: RPISPSRTESEMAFYWKGCAGHC*CRSPAG
Trigger: TCCAGCGGGAGATCGGCATCAGCAATGCCCTGCACA...ACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCCTGCTTGGACTAATTGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp CCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGAGACCAGCACATCCTTaGTCTCATGCTGGCTCTCTT +
Preference number: 4 (lower is better)
Translates to: PPTESQTPTTWVPDRHSRRPAHP*SHAGSL
Trigger: AAGAGAGCCAGCATGAGATCAAGGATGTGCTGGTCT...CCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp TCAGACAGGGAGTTCTGGCTCATTTCTCCACCTGTTAGCTTGGCGCCTGTTCAGATAGACTGGACCCAGTaGACCACCTGGTCATTGGTC +
Preference number: 4 (lower is better)
Translates to: SDREFWLISPPVSLAPVQIDWTQ*TTWSLV
Trigger: GACCAATGACCAGGTGGTTCACTGGGTCCAGTCTAT...CTGAACAGGCGCCAAGCTAACAGGTGGAGAAATGAGCCAGAACTCCCTGTCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR GCA 90 bp AAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATCACCCACGAAGGTGATTGGGCCTaGCGTTTTACCACTGTCATC +
Preference number: 4 (lower is better)
Translates to: KHSPGTFPSSSISGSITHEGDWA*RFTTVI
Trigger: GATGACAGTGGTAAAACGGCAGGCCCAATCACCTTC...GTGGGTGATAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GGAGGGTATAGGGACACACAAGGGAGCCTGCCTCAGTCCACTTTAGATTTCTTAAGCAGCTCCTGCAGATaGCGGGCTTTCTCCTCACAC +
Preference number: 4 (lower is better)
Translates to: GGYRDTQGSLPQSTLDFLSSSCR*RAFSSH
Trigger: GTGTGAGGAGAAAGCCCGGCATCTGCAGGAGCTGCT...TAAGAAATCTAAAGTGGACTGAGGCAGGCTCCCTTGTGTGTCCCTATACCCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp CCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGGTCTGCTGCAACTTCTaGTCTGCTACTTCTAGCAGC +
Preference number: 4 (lower is better)
Translates to: PPTESQTPTTWVPDRHSRVCCNF*SATSSS
Trigger: GCTGCTAGAAGTAGCAGAGCAGAAGTTGCAGCAGAC...CCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GGGTTTGGGGAGGAGGGAGTGATACTGAGAGAGGAGGTGGCAAAACCACTCAGAGTCTGCTGCAACTTCTaGTCTGCTACTTCTAGCAGC +
Preference number: 4 (lower is better)
Translates to: GFGEEGVILREEVAKPLRVCCNF*SATSSS
Trigger: GCTGCTAGAAGTAGCAGAGCAGAAGTTGCAGCAGAC...TCTGAGTGGTTTTGCCACCTCCTCTCTCAGTATCACTCCCTCCTCCCCAAACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp CCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGTTGCGCATGGTCTGCTaGAACTTCTGCTCTGCTACT +
Preference number: 4 (lower is better)
Translates to: PPTESQTPTTWVPDRHSRLRMVC*NFCSAT
Trigger: AGTAGCAGAGCAGAAGTTGCAGCAGACCATGCGCAA...CCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp CTCCACTCCTGGCTTTGTCCTGGAAGAGGGTTCGGGGTATTCTACACCCCTCGTGATGTTCCTCAATGTTaGCATGACGTTCCTCAGCCT +
Preference number: 4 (lower is better)
Translates to: LHSWLCPGRGFGVFYTPRDVPQC*HDVPQP
Trigger: AGGCTGAGGAACGTCATGGCAACATTGAGGAACATC...ACGAGGGGTGTAGAATACCCCGAACCCTCTTCCAGGACAAAGCCAGGAGTGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp CACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATCACCCACCCTGATGTTCCTCAATGTTaGCATGACGTTCCTCAGCCT +
Preference number: 4 (lower is better)
Translates to: HSPGTFPSSSISGSITHPDVPQC*HDVPQP
Trigger: AGGCTGAGGAACGTCATGGCAACATTGAGGAACATC...AGGGTGGGTGATAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp TCTACTCAGCTGCTTCTCTCTCCATTCCCAGAGGCCTGTCTGGTAGGGAGACAGAGCAGCTTCCTCCTATaGTTTCTTAAGTCGCTGGGC +
Preference number: 4 (lower is better)
Translates to: STQLLLSPFPEACLVGRQSSFLL*FLKSLG
Trigger: GCCCAGCGACTTAAGAAAGCATAGGAGGAAGCTGCT...CTGTCTCCCTACCAGACAGGCCTCTGGGAATGGAGAGAGAAGCAGCTGAGTAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR GCA 90 bp GCAAGACTTGCAGGCAAGAGCTACAGACACTGGAGATTGGGGTTTGGGGAGGAGAGCAGCTTCCTCCTATaGTTTCTTAAGTCGCTGGGC +
Preference number: 4 (lower is better)
Translates to: ARLAGKSYRHWRLGFGEESSFLL*FLKSLG
Trigger: GCCCAGCGACTTAAGAAAGCATAGGAGGAAGCTGCT...CTCCTCCCCAAACCCCAATCTCCAGTGTCTGTAGCTCTTGCCTGCAAGTCTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCCACCGTGCTGCCAGACTCTGTGTGGGGATCTaGAGAACCAAGGCCAGTGTG +
Preference number: 4 (lower is better)
Translates to: EGQLIFLINLPCPHRAARLCVGI*RTKASV
Trigger: CACACTGGCCTTGGTTCTGCAGATCCCCACACAGAG...TCTGGCAGCACGGTGGGGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp CCGGTCACAAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTACCAATTTCCTGTCTGTaGCCAAGGCCAACAGGTTAT +
Preference number: 4 (lower is better)
Translates to: PVTSTAQALSRPLPFRVLPISCL*PRPTGY
Trigger: ATAACCTGTTGGCCTTGGGCACAGACAGGAAATTGG...TAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTTGTGACCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp CAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGGAGACCTTGGTCACACCAATTTCCTGTCTGTaGCCAAGGCCAACAGGTTAT +
Preference number: 4 (lower is better)
Translates to: QTPTTWVPDRHSRETLVTPISCL*PRPTGY
Trigger: ATAACCTGTTGGCCTTGGGCACAGACAGGAAATTGG...TGTGACCAAGGTCTCCCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp TGTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACACACCTGAAGGTGATTaGGCCTGCCGTTTTACCACT +
Preference number: 4 (lower is better)
Translates to: CPSLPPTESQTPTTWVPDTPEGD*ACRFTT
Trigger: AGTGGTAAAACGGCAGGCCCAATCACCTTCAGGTGT...GTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp CCTGATGAGCCCATAGTCCAGACCAAAACAGATCCGGAAGAGGGAAGGTGGCCAGCAGGGATTCCTTGTTaGCCAGCTCATTCTCCAGTT +
Preference number: 4 (lower is better)
Translates to: PDEPIVQTKTDPEEGRWPAGIPC*PAHSPV
Trigger: AACTGGAGAATGAGCTGGCCAACAAGGAATCCCTGC...TGGCCACCTTCCCTCTTCCGGATCTGTTTTGGTCTGGACTATGGGCTCATCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCCACCGTGCTGCCAGATGCCCACGTGTGACCTaGAGTGGATGCCATCCACAA +
Preference number: 4 (lower is better)
Translates to: EGQLIFLINLPCPHRAARCPRVT*SGCHPQ
Trigger: TTGTGGATGGCATCCACTCCAGGTCACACGTGGGCA...TCTGGCAGCACGGTGGGGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCGGCGCCCAACACCCCTaGCAGTGGCGATGGCTTCCA +
Preference number: 4 (lower is better)
Translates to: ELVQKRGAIDISHKSALSGAQHP*QWRWLP
Trigger: TGGAAGCCATCGCCACTGCCAGGGGTGTTGGGCGCC...GGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp CTGAGCCAATACAGTACTGAGAAGGGACCTGGTTTGACACAGGAGGCTGGCAGGATCATCCTGATCTCCTaGTTGATGGCATCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: LSQYSTEKGPGLTQEAGRIILIS*LMASSC
Trigger: GCAGCTGGATGCCATCAACCAGGAGATCAGGATGAT...CCTGCCAGCCTCCTGTGTCAAACCAGGTCCCTTCTCAGTACTGTATTGGCTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp GGCAGGGAGAGCTTGGGTCACTGGTGGACTCTCCAGAGAAAACAGATATTGACAATTCGGTCCAGATCCTaGGCAGCACTTCGGGAAGTG +
Preference number: 4 (lower is better)
Translates to: GRESLGHWWTLQRKQILTIRSRS*AALREV
Trigger: CACTTCCCGAAGTGCTGCCCAGGATCTGGACCGAAT...TGTCAATATCTGTTTTCTCTGGAGAGTCCACCAGTGACCCAAGCTCTCCCTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp GGACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTCATCTCAGTCTTTGGTCCGCTCTTCCCGAGACACTaGCGACAGCAGCTTCCTCCT +
Preference number: 4 (lower is better)
Translates to: GQSPKWPFIGRVISVFGPLFPRH*RQQLPP
Trigger: AGGAGGAAGCTGCTGTCGCCAGTGTCTCGGGAAGAG...CGGACCAAAGACTGAGATGACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp TCCAGAAGGCCAATTAGTCCAAGCAGGACAGAGTCCGAAATGGCCTTTTATTGGCTAGCCGCAGCGTCCTaGGTGAGGAAGGAGGAGAAG +
Preference number: 4 (lower is better)
Translates to: SRRPISPSRTESEMAFYWLAAAS*VRKEEK
Trigger: CTTCTCCTCCTTCCTCACCCAGGACGCTGCGGCTAG...CCAATAAAAGGCCATTTCGGACTCTGTCCTGCTTGGACTAATTGGCCTTCTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GGGAGCCTGCCTCAGTCCACTTTAGATTTCTTAGACCTGGGACATGAGTCACTATTGTGCAGGGAGTCCTaGCTGCTGTTGCTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: GSLPQSTLDFLDLGHESLLCRES*LLLLLL
Trigger: CAGCAGCAGCAACAGCAGCCAGGACTCCCTGCACAA...TAGTGACTCATGTCCCAGGTCTAAGAAATCTAAAGTGGACTGAGGCAGGCTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GGACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTCATCTCAGTCTTTGGTCCGCGGTCCTTCTCTGCCTaGGTCCCCAACTTAGCAGGT +
Preference number: 4 (lower is better)
Translates to: GQSPKWPFIGRVISVFGPRSFSA*VPNLAG
Trigger: ACCTGCTAAGTTGGGGACCCAGGCAGAGAAGGACCG...CGGACCAAAGACTGAGATGACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GATGATGAAGGAGTGGATGAGCATATTCTGAGATCCCGGGCAACTGGAAAATCAGCCAGGAGACCACCGTaGGGCCATCCCATTGGGCAA +
Preference number: 4 (lower is better)
Translates to: DDEGVDEHILRSRATGKSARRPP*GHPIGQ
Trigger: TTGCCCAATGGGATGGCCCCACGGTGGTCTCCTGGC...TGATTTTCCAGTTGCCCGGGATCTCAGAATATGCTCATCCACTCCTTCATCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp CAAAGCAGCTACTCCAGTCACCTCCAGGATGGCACTGTACTGCCGGTCACAAGCAAGGCCAGTGTGTTGTaGTCGAAGTTTTCATCCAGG +
Preference number: 4 (lower is better)
Translates to: QSSYSSHLQDGTVLPVTSKASVL*SKFSSR
Trigger: CCTGGATGAAAACTTCGACCACAACACACTGGCCTT...GCTTGTGACCGGCAGTACAGTGCCATCCTGGAGGTGACTGGAGTAGCTGCTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp AGGAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCTTAGGCGGGGCAGGTaGAGGCTGCAGCGGACCCAG +
Preference number: 4 (lower is better)
Translates to: RNWSRREGQLIFLINLPCLRRGR*RLQRTQ
Trigger: CTGGGTCCGCTGCAGCCTCCACCTGCCCCGCCTAAG...ACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GATGATGAAGGAGTGGATGAGCATATTCTGAGATCCCGGGCAACTGGAAAATCAGGGGGTCCCCCTCATTaGTTGTGGGCATCACCTCAC +
Preference number: 4 (lower is better)
Translates to: DDEGVDEHILRSRATGKSGGPPH*LWASPH
Trigger: GTGAGGTGATGCCCACAATCAATGAGGGGGACCCCC...TGATTTTCCAGTTGCCCGGGATCTCAGAATATGCTCATCCACTCCTTCATCATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp AAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCCACCGTGCTGCGCTACCAAAGTTTCCTaGCTCTCCCGAAGGGACTCC +
Preference number: 4 (lower is better)
Translates to: KRGAIDISHKSALSPPCCATKVS*LSRRDS
Trigger: GGAGTCCCTTCGGGAGAGTCAGGAAACTTTGGTAGC...GCAGCACGGTGGGGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCTCTTGCCCTCCTCTTaGCTCAGGCCAGGGTGGCCA +
Preference number: 4 (lower is better)
Translates to: ELVQKRGAIDISHKSALSLLPSS*LRPGWP
Trigger: TGGCCACCCTGGCCTGAGTCAAGAGGAGGGCAAGAG...GGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GATGATGAAGGAGTGGATGAGCATATTCTGAGATCCCGGGCAACTGGAAAATCACTGGGGTTGCTGTCCTaGCCCTCCAAGGCACTCTTG +
Preference number: 4 (lower is better)
Translates to: DDEGVDEHILRSRATGKSLGLLS*PSKALL
Trigger: CAAGAGTGCCTTGGAGGGTCAGGACAGCAACCCCAG...TGATTTTCCAGTTGCCCGGGATCTCAGAATATGCTCATCCACTCCTTCATCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GATGATGAAGGAGTGGATGAGCATATTCTGAGATCCCGGGCAACTGGAAAATCAGGCCAATGGATGACTTaGTGCCCTTGCGCTTGGCGC +
Preference number: 4 (lower is better)
Translates to: DDEGVDEHILRSRATGKSGQWMT*CPCAWR
Trigger: GCGCCAAGCGCAAGGGCATCAAGTCATCCATTGGCC...TGATTTTCCAGTTGCCCGGGATCTCAGAATATGCTCATCCACTCCTTCATCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GGGAGCCTGCCTCAGTCCACTTTAGATTTCTTAGACCTGGGACATGAGTCACTACACCCAGACATTCCCTaGAGAAGTCCTGGAGGTAGG +
Preference number: 4 (lower is better)
Translates to: GSLPQSTLDFLDLGHESLHPDIP*RSPGGR
Trigger: CCTACCTCCAGGACTTCTTCAGGGAATGTCTGGGTG...TAGTGACTCATGTCCCAGGTCTAAGAAATCTAAAGTGGACTGAGGCAGGCTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp AGGCCAATTAGTCCAAGCAGGACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTTCCTTCTTGGTGAGGTaGTCCAGCATGCGGGCATCC +
Preference number: 4 (lower is better)
Translates to: RPISPSRTESEMAFYWKGSFLVR*SSMRAS
Trigger: GGATGCCCGCATGCTGGATCACCTCACCAAGAAGGA...ACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCCTGCTTGGACTAATTGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp CCACCTGTTAGCTTGGCGCCTGTTCAGAATCCCAGTGATGAAATGGCAAAGCAGAACTGTCCACCATCTTaGGATGGACACGCAGGTCCT +
Preference number: 4 (lower is better)
Translates to: PPVSLAPVQNPSDEMAKQNCPPS*DGHAGP
Trigger: AGGACCTGCGTGTCCATCTCAAGATGGTGGACAGTT...CTGCTTTGCCATTTCATCACTGGGATTCTGAACAGGCGCCAAGCTAACAGGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR TCA 90 bp GAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCCACCGTGCTGCCAGAAACTGTCCACCATCTTaGGATGGACACGCAGGTCCT +
Preference number: 4 (lower is better)
Translates to: EGQLIFLINLPCPHRAARNCPPS*DGHAGP
Trigger: AGGACCTGCGTGTCCATCTCAAGATGGTGGACAGTT...TCTGGCAGCACGGTGGGGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp CACTGGTGGACTCTCCAGAGAAAACAGATATTGACAGTGAGGCAGGGCCACACCAGACCAGCACATCCTTaGTCTCATGCTGGCTCTCTT +
Preference number: 4 (lower is better)
Translates to: HWWTLQRKQILTVRQGHTRPAHP*SHAGSL
Trigger: AAGAGAGCCAGCATGAGATCAAGGATGTGCTGGTCT...GGTGTGGCCCTGCCTCACTGTCAATATCTGTTTTCTCTGGAGAGTCCACCAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR TCA 90 bp CTCCACTCCTGGCTTTGTCCTGGAAGAGGGTTCGGGGTATTCTACACCCCTCGTAGGCCAACAGGTTATTaGACTCTCTCTCCATCACTT +
Preference number: 4 (lower is better)
Translates to: LHSWLCPGRGFGVFYTPRRPTGY*TLSPSL
Trigger: AAGTGATGGAGAGAGAGTTCAATAACCTGTTGGCCT...ACGAGGGGTGTAGAATACCCCGAACCCTCTTCCAGGACAAAGCCAGGAGTGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GGAGGGTATAGGGACACACAAGGGAGCCTGCCTCAGTCCACTTTAGATTTCTTAGCAGAGTCTCTGCCTTaGGCATGGTCTGCTGCAACT +
Preference number: 4 (lower is better)
Translates to: GGYRDTQGSLPQSTLDFLAESLP*AWSAAT
Trigger: AGTTGCAGCAGACCATGCGCAAGGCAGAGACTCTGC...TAAGAAATCTAAAGTGGACTGAGGCAGGCTCCCTTGTGTGTCCCTATACCCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GATGATGAAGGAGTGGATGAGCATATTCTGAGATCCCGGGCAACTGGAAAATCAGTGACCTGGAGTGGATaGCATCCACAAACGGCCCCC +
Preference number: 4 (lower is better)
Translates to: DDEGVDEHILRSRATGKSVTWSG*HPQTAP
Trigger: GGGGGCCGTTTGTGGATGGCATCCACTCCAGGTCAC...TGATTTTCCAGTTGCCCGGGATCTCAGAATATGCTCATCCACTCCTTCATCATC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GGAGGGTATAGGGACACACAAGGGAGCCTGCCTCAGTCCACTTTAGATTTCTTAGGTCATGGATGGATGTaGCTTCTCGCTGAGCAGCCA +
Preference number: 4 (lower is better)
Translates to: GGYRDTQGSLPQSTLDFLGHGWM*LLAEQP
Trigger: TGGCTGCTCAGCGAGAAGCCACATCCATCCATGACC...TAAGAAATCTAAAGTGGACTGAGGCAGGCTCCCTTGTGTGTCCCTATACCCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GGGAGCCTGCCTCAGTCCACTTTAGATTTCTTAGACCTGGGACATGAGTCACTAGCTTTCTCCTCACACTaGCGGTGCAGGGATTCCTTG +
Preference number: 4 (lower is better)
Translates to: GSLPQSTLDFLDLGHESLAFSSH*RCRDSL
Trigger: CAAGGAATCCCTGCACCGCCAGTGTGAGGAGAAAGC...TAGTGACTCATGTCCCAGGTCTAAGAAATCTAAAGTGGACTGAGGCAGGCTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp AGGGCTCCTTCCATCTTAGGACTGGCCCTTCTCTATAACTCCACTATTCAGGACACGTGTGACCTGGAGTaGATGCCATCCACAAACGGC +
Preference number: 4 (lower is better)
Translates to: RAPSILGLALLYNSTIQDTCDLE*MPSTNG
Trigger: GCCGTTTGTGGATGGCATCCACTCCAGGTCACACGT...GTCCTGAATAGTGGAGTTATAGAGAAGGGCCAGTCCTAAGATGGAAGGAGCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp GGGAGCCTGCCTCAGTCCACTTTAGATTTCTTAGACCTGGGACATGAGTCACTATGCCCACGTGTGACCTaGAGTGGATGCCATCCACAA +
Preference number: 4 (lower is better)
Translates to: GSLPQSTLDFLDLGHESLCPRVT*SGCHPQ
Trigger: TTGTGGATGGCATCCACTCCAGGTCACACGTGGGCA...TAGTGACTCATGTCCCAGGTCTAAGAAATCTAAAGTGGACTGAGGCAGGCTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCCACCGTGCTGCCAGAATGGCTTCCAGTCCTTaGCAGATTCATCCCTCAGCG +
Preference number: 4 (lower is better)
Translates to: EGQLIFLINLPCPHRAARMASSP*QIHPSA
Trigger: CGCTGAGGGATGAATCTGCCAAGGACTGGAAGCCAT...TCTGGCAGCACGGTGGGGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GTGGATGAGCATATTCTGAGATCCCGGGCAACTGGAAAATCACAGAGGAGAGACCAGCTCGAAGCTCAGTaGACTCCTTCTCCTCCTGGA +
Preference number: 4 (lower is better)
Translates to: VDEHILRSRATGKSQRRDQLEAQ*TPSPPG
Trigger: TCCAGGAGGAGAAGGAGTCCACTGAGCTTCGAGCTG...GTCTCTCCTCTGTGATTTTCCAGTTGCCCGGGATCTCAGAATATGCTCATCCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GATGATGAAGGAGTGGATGAGCATATTCTGAGATCCCGGGCAACTGGAAAATCATCCTTCTTGGTGAGGTaGTCCAGCATGCGGGCATCC +
Preference number: 4 (lower is better)
Translates to: DDEGVDEHILRSRATGKSSFLVR*SSMRAS
Trigger: GGATGCCCGCATGCTGGATCACCTCACCAAGAAGGA...TGATTTTCCAGTTGCCCGGGATCTCAGAATATGCTCATCCACTCCTTCATCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp CAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGGAGACCTTGGTCACACACATGATGCCATACTaGAGACTGGTTCTATGGAAA +
Preference number: 4 (lower is better)
Translates to: QTPTTWVPDRHSRETLVTHMMPY*RLVLWK
Trigger: TTTCCATAGAACCAGTCTTCAGTATGGCATCATGTG...TGTGACCAAGGTCTCCCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp CACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATCACCCACCCTCACATGATGCCATACTaGAGACTGGTTCTATGGAAA +
Preference number: 4 (lower is better)
Translates to: HSPGTFPSSSISGSITHPHMMPY*RLVLWK
Trigger: TTTCCATAGAACCAGTCTTCAGTATGGCATCATGTG...AGGGTGGGTGATAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp CCGGTCACAAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTACACATGATGCCATACTaGAGACTGGTTCTATGGAAA +
Preference number: 4 (lower is better)
Translates to: PVTSTAQALSRPLPFRVLHMMPY*RLVLWK
Trigger: TTTCCATAGAACCAGTCTTCAGTATGGCATCATGTG...TAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTTGTGACCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GGGTTTGGGGAGGAGGGAGTGATACTGAGAGAGGAGGTGGCAAAACCACTCAGAAGGCCAACAGGTTATTaGACTCTCTCTCCATCACTT +
Preference number: 4 (lower is better)
Translates to: GFGEEGVILREEVAKPLRRPTGY*TLSPSL
Trigger: AAGTGATGGAGAGAGAGTTCAATAACCTGTTGGCCT...TCTGAGTGGTTTTGCCACCTCCTCTCTCAGTATCACTCCCTCCTCCCCAAACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp CTCCACTCCTGGCTTTGTCCTGGAAGAGGGTTCGGGGTATTCTACACCCCTCGTTGTGTTATTCCGCTCTaGTTTCAGCTCAGATATCTC +
Preference number: 4 (lower is better)
Translates to: LHSWLCPGRGFGVFYTPRCVIPL*FQLRYL
Trigger: GAGATATCTGAGCTGAAAGCAGAGCGGAATAACACA...ACGAGGGGTGTAGAATACCCCGAACCCTCTTCCAGGACAAAGCCAGGAGTGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GATGATGAAGGAGTGGATGAGCATATTCTGAGATCCCGGGCAACTGGAAAATCACGAATTCCTGCACCCTaGTGCAGGGCAGATACCTGC +
Preference number: 4 (lower is better)
Translates to: DDEGVDEHILRSRATGKSRIPAP*CRADTC
Trigger: GCAGGTATCTGCCCTGCAGCAGGGTGCAGGAATTCG...TGATTTTCCAGTTGCCCGGGATCTCAGAATATGCTCATCCACTCCTTCATCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GATGATGAAGGAGTGGATGAGCATATTCTGAGATCCCGGGCAACTGGAAAATCATCCATCCCGAATTCCTaGACCCTGCTGCAGGGCAGA +
Preference number: 4 (lower is better)
Translates to: DDEGVDEHILRSRATGKSSIPNS*TLLQGR
Trigger: TCTGCCCTGCAGCAGGGTGCAGGAATTCGGGATGGA...TGATTTTCCAGTTGCCCGGGATCTCAGAATATGCTCATCCACTCCTTCATCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GATGATGAAGGAGTGGATGAGCATATTCTGAGATCCCGGGCAACTGGAAAATCAAGCAGCTCCTGCAGATaGCGGGCTTTCTCCTCACAC +
Preference number: 4 (lower is better)
Translates to: DDEGVDEHILRSRATGKSSSSCR*RAFSSH
Trigger: GTGTGAGGAGAAAGCCCGGCATCTGCAGGAGCTGCT...TGATTTTCCAGTTGCCCGGGATCTCAGAATATGCTCATCCACTCCTTCATCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCCACCGTGCTGCCAGATTGCGCATGGTCTGCTaGAACTTCTGCTCTGCTACT +
Preference number: 4 (lower is better)
Translates to: EGQLIFLINLPCPHRAARLRMVC*NFCSAT
Trigger: AGTAGCAGAGCAGAAGTTGCAGCAGACCATGCGCAA...TCTGGCAGCACGGTGGGGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp AGGAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCGCTGGCGCACCCTTaGCAGCTCCTGGTTCTTCTC +
Preference number: 4 (lower is better)
Translates to: RNWSRREGQLIFLINLPCPLAHP*QLLVLL
Trigger: GAGAAGAACCAGGAGCTGGCAAGGGTGCGCCAGCGG...ACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GATGATGAAGGAGTGGATGAGCATATTCTGAGATCCCGGGCAACTGGAAAATCAAGTCCTGGCTGCTGTTaGTGCTGCTGGGGTTGCTGT +
Preference number: 4 (lower is better)
Translates to: DDEGVDEHILRSRATGKSSPGCC*CCWGCC
Trigger: ACAGCAACCCCAGCAGCAGCAACAGCAGCCAGGACT...TGATTTTCCAGTTGCCCGGGATCTCAGAATATGCTCATCCACTCCTTCATCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp ATTTCTCCACCTGTTAGCTTGGCGCCTGTTCAGAATCCCAGTGATGAAATGGCACTCTGTGTGGGGATCTaGAGAACCAAGGCCAGTGTG +
Preference number: 4 (lower is better)
Translates to: ISPPVSLAPVQNPSDEMALCVGI*RTKASV
Trigger: CACACTGGCCTTGGTTCTGCAGATCCCCACACAGAG...TGCCATTTCATCACTGGGATTCTGAACAGGCGCCAAGCTAACAGGTGGAGAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp GCACAGAGTTTCTACCTTAGTCTTCCTCAGCTCCACTCCTGGCTTTGTCCTGGAGCAGGGATTCCTTGTTaGCCAGCTCATTCTCCAGTT +
Preference number: 4 (lower is better)
Translates to: AQSFYLSLPQLHSWLCPGAGIPC*PAHSPV
Trigger: AACTGGAGAATGAGCTGGCCAACAAGGAATCCCTGC...TCCAGGACAAAGCCAGGAGTGGAGCTGAGGAAGACTAAGGTAGAAACTCTGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp AGGGCTCCTTCCATCTTAGGACTGGCCCTTCTCTATAACTCCACTATTCAGGACATGGCTTCCAGTCCTTaGCAGATTCATCCCTCAGCG +
Preference number: 4 (lower is better)
Translates to: RAPSILGLALLYNSTIQDMASSP*QIHPSA
Trigger: CGCTGAGGGATGAATCTGCCAAGGACTGGAAGCCAT...GTCCTGAATAGTGGAGTTATAGAGAAGGGCCAGTCCTAAGATGGAAGGAGCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp GGACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTCATCTCAGTCTTTGGTCCGGACTCCTTCTCCTCCTaGATCATCCTGATCTCCTGG +
Preference number: 4 (lower is better)
Translates to: GQSPKWPFIGRVISVFGPDSFSS*IILISW
Trigger: CCAGGAGATCAGGATGATCCAGGAGGAGAAGGAGTC...CGGACCAAAGACTGAGATGACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp ATTTCTCCACCTGTTAGCTTGGCGCCTGTTCAGAATCCCAGTGATGAAATGGCAATTCGGTCCAGATCCTaGGCAGCACTTCGGGAAGTG +
Preference number: 4 (lower is better)
Translates to: ISPPVSLAPVQNPSDEMAIRSRS*AALREV
Trigger: CACTTCCCGAAGTGCTGCCCAGGATCTGGACCGAAT...TGCCATTTCATCACTGGGATTCTGAACAGGCGCCAAGCTAACAGGTGGAGAAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp GAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCCACCGTGCTGCCAGACTTAGCAGGTACCATTaGTTCCTGCAGACTGAGCTC +
Preference number: 4 (lower is better)
Translates to: EGQLIFLINLPCPHRAARLSRYH*FLQTEL
Trigger: GAGCTCAGTCTGCAGGAACCAATGGTACCTGCTAAG...TCTGGCAGCACGGTGGGGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GCTGTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGTGCCATACTGAAGACTaGTTCTATGGAAACTGTCCA +
Preference number: 4 (lower is better)
Translates to: AVLPSLLQNLKHLQPGCPCHTED*FYGNCP
Trigger: TGGACAGTTTCCATAGAACCAGTCTTCAGTATGGCA...CGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GGACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTCATCTCAGTCTTTGGTCCGGAACCACCTGGTCATTaGTCCAGACCAGCACATCCT +
Preference number: 4 (lower is better)
Translates to: GQSPKWPFIGRVISVFGPEPPGH*SRPAHP
Trigger: AGGATGTGCTGGTCTGGACCAATGACCAGGTGGTTC...CGGACCAAAGACTGAGATGACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR CAA 72 bp GACAGGGAGTTCTGGCTCATTTCTCCACCTGTTAGCTaGGCGCCTGTTCAGAATCCCAGTGATGAAATGGCA +
Preference number: 4 (lower is better)
Translates to: DREFWLISPPVS*APVQNPSDEMA
Trigger: TGCCATTTCATCACTGGGATTCTGAACAGGCGCCAAGCTAACAGGTGGAGAAATGAGCCAGAACTCCCTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR TCA 90 bp GGAGGGTATAGGGACACACAAGGGAGCCTGCCTCAGTCCACTTTAGATTTCTTAGCCTCTTCAGACACATaGTGCCATACTGAAGACTGG +
Preference number: 4 (lower is better)
Translates to: GGYRDTQGSLPQSTLDFLASSDT*CHTEDW
Trigger: CCAGTCTTCAGTATGGCATCATGTGTCTGAAGAGGC...TAAGAAATCTAAAGTGGACTGAGGCAGGCTCCCTTGTGTGTCCCTATACCCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GCATCCTTTTCAGACAGGGAGTTCTGGCTCATTTCTCCACCTGTTAGCTTGGCGATGTTCACCATCAGCTaGTCAAAGTTGGCCTCAGCA +
Preference number: 4 (lower is better)
Translates to: ASFSDREFWLISPPVSLAMFTIS*SKLASA
Trigger: TGCTGAGGCCAACTTTGAGCAGCTGATGGTGAACAT...CGCCAAGCTAACAGGTGGAGAAATGAGCCAGAACTCCCTGTCTGAAAAGGATGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
CDS-3UTR GCA 90 bp GTGGATGAGCATATTCTGAGATCCCGGGCAACTGGAAAATCACAGAGGAGAGACAGTCCCTTCCTCTTCTaGTACTCCATCCCGAATTCC +
Preference number: 4 (lower is better)
Translates to: VDEHILRSRATGKSQRRDSPFLF*YSIPNS
Trigger: GGAATTCGGGATGGAGTAGCAGAAGAGGAAGGGACT...GTCTCTCCTCTGTGATTTTCCAGTTGCCCGGGATCTCAGAATATGCTCATCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GTTAAGGAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCCGCTGGCGCACCCTTaGCAGCTCCTGGTTCTTCTC +
Preference number: 4 (lower is better)
Translates to: VKELVQKRGAIDISHKSAPLAHP*QLLVLL
Trigger: GAGAAGAACCAGGAGCTGGCAAGGGTGCGCCAGCGG...GGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTCCTTAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp AGGAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTGTGACCTGGAGTGGATaGCATCCACAAACGGCCCCC +
Preference number: 4 (lower is better)
Translates to: RNWSRREGQLIFLINLPCVTWSG*HPQTAP
Trigger: GGGGGCCGTTTGTGGATGGCATCCACTCCAGGTCAC...ACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCCTCCAAGGCACTCTTaGCCTCCTCTTGACTCAGGC +
Preference number: 4 (lower is better)
Translates to: ELVQKRGAIDISHKSALSPPRHS*PPLDSG
Trigger: GCCTGAGTCAAGAGGAGGGCAAGAGTGCCTTGGAGG...GGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp AGGAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCTGGCAGTGGCGATaGCTTCCAGTCCTTGGCAGA +
Preference number: 4 (lower is better)
Translates to: RNWSRREGQLIFLINLPCPWQWR*LPVLGR
Trigger: TCTGCCAAGGACTGGAAGCCATCGCCACTGCCAGGG...ACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp AGGGCTCCTTCCATCTTAGGACTGGCCCTTCTCTATAACTCCACTATTCAGGACCTTAGCAGGTACCATTaGTTCCTGCAGACTGAGCTC +
Preference number: 4 (lower is better)
Translates to: RAPSILGLALLYNSTIQDLSRYH*FLQTEL
Trigger: GAGCTCAGTCTGCAGGAACCAATGGTACCTGCTAAG...GTCCTGAATAGTGGAGTTATAGAGAAGGGCCAGTCCTAAGATGGAAGGAGCCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp GAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCGGTCCTTCTCTGCCTaGGTCCCCAACTTAGCAGGT +
Preference number: 4 (lower is better)
Translates to: ELVQKRGAIDISHKSALSRSFSA*VPNLAG
Trigger: ACCTGCTAAGTTGGGGACCCAGGCAGAGAAGGACCG...GGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp TCCAGAAGGCCAATTAGTCCAAGCAGGACAGAGTCCGAAATGGCCTTTTATTGGGTGGGGCCATCCCATTaGGCAAAGGGCATTCCTTTT +
Preference number: 4 (lower is better)
Translates to: SRRPISPSRTESEMAFYWVGPSH*AKGIPF
Trigger: AAAAGGAATGCCCTTTGCCCAATGGGATGGCCCCAC...CCAATAAAAGGCCATTTCGGACTCTGTCCTGCTTGGACTAATTGGCCTTCTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp AGGCCAATTAGTCCAAGCAGGACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTGTGGGGCCATCCCATTaGGCAAAGGGCATTCCTTTT +
Preference number: 4 (lower is better)
Translates to: RPISPSRTESEMAFYWKGVGPSH*AKGIPF
Trigger: AAAAGGAATGCCCTTTGCCCAATGGGATGGCCCCAC...ACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCCTGCTTGGACTAATTGGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp AGGCCAATTAGTCCAAGCAGGACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTGAACCACCTGGTCATTaGTCCAGACCAGCACATCCT +
Preference number: 4 (lower is better)
Translates to: RPISPSRTESEMAFYWKGEPPGH*SRPAHP
Trigger: AGGATGTGCTGGTCTGGACCAATGACCAGGTGGTTC...ACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCCTGCTTGGACTAATTGGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GTTAAGGAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCGCAGGTCCTTCTTGGTaGGGTGATCCAGCATGCGGG +
Preference number: 4 (lower is better)
Translates to: VKELVQKRGAIDISHKSAAGPSW*GDPACG
Trigger: CCCGCATGCTGGATCACCTCACCAAGAAGGACCTGC...GGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTCCTTAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp AGCAGGACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTCATCTCAGTCTTTGGGCCTCTTCAGACACATaGTGCCATACTGAAGACTGG +
Preference number: 4 (lower is better)
Translates to: SRTESEMAFYWKGHLSLWASSDT*CHTEDW
Trigger: CCAGTCTTCAGTATGGCATCATGTGTCTGAAGAGGC...CCAAAGACTGAGATGACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp TCCAGAAGGCCAATTAGTCCAAGCAGGACAGAGTCCGAAATGGCCTTTTATTGGAGACCAGCACATCCTTaGTCTCATGCTGGCTCTCTT +
Preference number: 4 (lower is better)
Translates to: SRRPISPSRTESEMAFYWRPAHP*SHAGSL
Trigger: AAGAGAGCCAGCATGAGATCAAGGATGTGCTGGTCT...CCAATAAAAGGCCATTTCGGACTCTGTCCTGCTTGGACTAATTGGCCTTCTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GGACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTCATCTCAGTCTTTGGTCCGGATGTTCCTCAATGTTaGCATGACGTTCCTCAGCCT +
Preference number: 4 (lower is better)
Translates to: GQSPKWPFIGRVISVFGPDVPQC*HDVPQP
Trigger: AGGCTGAGGAACGTCATGGCAACATTGAGGAACATC...CGGACCAAAGACTGAGATGACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp AGGAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCTCCAAGGCACTCTTaGCCTCCTCTTGACTCAGGC +
Preference number: 4 (lower is better)
Translates to: RNWSRREGQLIFLINLPCPPRHS*PPLDSG
Trigger: GCCTGAGTCAAGAGGAGGGCAAGAGTGCCTTGGAGG...ACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GATGATGAAGGAGTGGATGAGCATATTCTGAGATCCCGGGCAACTGGAAAATCATTTCCACAGGCGTTTTaGTCCCAGATCCACAGTCCC +
Preference number: 4 (lower is better)
Translates to: DDEGVDEHILRSRATGKSFPQAF*SQIHSP
Trigger: GGGACTGTGGATCTGGGACCAAAACGCCTGTGGAAA...TGATTTTCCAGTTGCCCGGGATCTCAGAATATGCTCATCCACTCCTTCATCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp ATTTCTCCACCTGTTAGCTTGGCGCCTGTTCAGAATCCCAGTGATGAAATGGCAATCATCCTGATCTCCTaGTTGATGGCATCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: ISPPVSLAPVQNPSDEMAIILIS*LMASSC
Trigger: GCAGCTGGATGCCATCAACCAGGAGATCAGGATGAT...TGCCATTTCATCACTGGGATTCTGAACAGGCGCCAAGCTAACAGGTGGAGAAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp TCCAGAAGGCCAATTAGTCCAAGCAGGACAGAGTCCGAAATGGCCTTTTATTGGTCCTTGATCTCATGCTaGCTCTCTTCCCGCCTCTTT +
Preference number: 4 (lower is better)
Translates to: SRRPISPSRTESEMAFYWSLISC*LSSRLF
Trigger: AAAGAGGCGGGAAGAGAGCCAGCATGAGATCAAGGA...CCAATAAAAGGCCATTTCGGACTCTGTCCTGCTTGGACTAATTGGCCTTCTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp AAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCCACCGTGCTGCAAGGCCAGTGTGTTGTaGTCGAAGTTTTCATCCAGG +
Preference number: 4 (lower is better)
Translates to: KRGAIDISHKSALSPPCCKASVL*SKFSSR
Trigger: CCTGGATGAAAACTTCGACCACAACACACTGGCCTT...GCAGCACGGTGGGGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp AGGAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCTGGGTGCTCTGTGTaGGGATCTGCAGAACCAAGG +
Preference number: 4 (lower is better)
Translates to: RNWSRREGQLIFLINLPCPGCSV*GSAEPR
Trigger: CCTTGGTTCTGCAGATCCCCACACAGAGCACCCAGG...ACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR TCA 90 bp GGACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTCATCTCAGTCTTTGGTCCGAGGCCAACAGGTTATTaGACTCTCTCTCCATCACTT +
Preference number: 4 (lower is better)
Translates to: GQSPKWPFIGRVISVFGPRPTGY*TLSPSL
Trigger: AAGTGATGGAGAGAGAGTTCAATAACCTGTTGGCCT...CGGACCAAAGACTGAGATGACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp TCCAGAAGGCCAATTAGTCCAAGCAGGACAGAGTCCGAAATGGCCTTTTATTGGATGTTCACCATCAGCTaGTCAAAGTTGGCCTCAGCA +
Preference number: 4 (lower is better)
Translates to: SRRPISPSRTESEMAFYWMFTIS*SKLASA
Trigger: TGCTGAGGCCAACTTTGAGCAGCTGATGGTGAACAT...CCAATAAAAGGCCATTTCGGACTCTGTCCTGCTTGGACTAATTGGCCTTCTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp AGCAGGACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTCATCTCAGTCTTTGGCCAATTTCCTGTCTGTaGCCAAGGCCAACAGGTTAT +
Preference number: 4 (lower is better)
Translates to: SRTESEMAFYWKGHLSLWPISCL*PRPTGY
Trigger: ATAACCTGTTGGCCTTGGGCACAGACAGGAAATTGG...CCAAAGACTGAGATGACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCCTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp AGGAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTACGTGTGACCTGGAGTaGATGCCATCCACAAACGGC +
Preference number: 4 (lower is better)
Translates to: RNWSRREGQLIFLINLPCTCDLE*MPSTNG
Trigger: GCCGTTTGTGGATGGCATCCACTCCAGGTCACACGT...ACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR GCA 90 bp GGAGGGTATAGGGACACACAAGGGAGCCTGCCTCAGTCCACTTTAGATTTCTTATGTGTTATTCCGCTCTaGTTTCAGCTCAGATATCTC +
Preference number: 4 (lower is better)
Translates to: GGYRDTQGSLPQSTLDFLCVIPL*FQLRYL
Trigger: GAGATATCTGAGCTGAAAGCAGAGCGGAATAACACA...TAAGAAATCTAAAGTGGACTGAGGCAGGCTCCCTTGTGTGTCCCTATACCCTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCCACCGTGCTGCCAGATCTCACATTTTATGGTaGCTTTATCCTCTCGGTTCT +
Preference number: 4 (lower is better)
Translates to: EGQLIFLINLPCPHRAARSHILW*LYPLGS
Trigger: AGAACCGAGAGGATAAAGCCACCATAAAATGTGAGA...TCTGGCAGCACGGTGGGGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCTCCTTGATCTCATGCTaGCTCTCTTCCCGCCTCTTT +
Preference number: 4 (lower is better)
Translates to: ELVQKRGAIDISHKSALSSLISC*LSSRLF
Trigger: AAAGAGGCGGGAAGAGAGCCAGCATGAGATCAAGGA...GGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
3UTR CAA 72 bp CCAAGGTTAAGGAATTGGTCCAGAAGAGAGGGGCAATaGATATTTCTCATAAATCTGCCCTGTCCCCACCGT +
Preference number: 4 (lower is better)
Translates to: PRLRNWSRREGQ*IFLINLPCPHR
Trigger: ACGGTGGGGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTCCTTAACCTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GGGAGCCTGCCTCAGTCCACTTTAGATTTCTTAGACCTGGGACATGAGTCACTATCTCACATTTTATGGTaGCTTTATCCTCTCGGTTCT +
Preference number: 4 (lower is better)
Translates to: GSLPQSTLDFLDLGHESLSHILW*LYPLGS
Trigger: AGAACCGAGAGGATAAAGCCACCATAAAATGTGAGA...TAGTGACTCATGTCCCAGGTCTAAGAAATCTAAAGTGGACTGAGGCAGGCTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GGACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTCATCTCAGTCTTTGGTCCGTCTCACATTTTATGGTaGCTTTATCCTCTCGGTTCT +
Preference number: 4 (lower is better)
Translates to: GQSPKWPFIGRVISVFGPSHILW*LYPLGS
Trigger: AGAACCGAGAGGATAAAGCCACCATAAAATGTGAGA...CGGACCAAAGACTGAGATGACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp AGGGCTCCTTCCATCTTAGGACTGGCCCTTCTCTATAACTCCACTATTCAGGACAAGTCTCACATTTTATaGTGGCTTTATCCTCTCGGT +
Preference number: 4 (lower is better)
Translates to: RAPSILGLALLYNSTIQDKSHIL*WLYPLG
Trigger: ACCGAGAGGATAAAGCCACCATAAAATGTGAGACTT...GTCCTGAATAGTGGAGTTATAGAGAAGGGCCAGTCCTAAGATGGAAGGAGCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp GAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCAAGGCCAGTGTGTTGTaGTCGAAGTTTTCATCCAGG +
Preference number: 4 (lower is better)
Translates to: ELVQKRGAIDISHKSALSKASVL*SKFSSR
Trigger: CCTGGATGAAAACTTCGACCACAACACACTGGCCTT...GGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GTTAAGGAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCATCATCCTGATCTCCTaGTTGATGGCATCCAGCTGC +
Preference number: 4 (lower is better)
Translates to: VKELVQKRGAIDISHKSAIILIS*LMASSC
Trigger: GCAGCTGGATGCCATCAACCAGGAGATCAGGATGAT...GGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTCCTTAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp ATTTCTCCACCTGTTAGCTTGGCGCCTGTTCAGAATCCCAGTGATGAAATGGCAAAGTCTCACATTTTATaGTGGCTTTATCCTCTCGGT +
Preference number: 4 (lower is better)
Translates to: ISPPVSLAPVQNPSDEMAKSHIL*WLYPLG
Trigger: ACCGAGAGGATAAAGCCACCATAAAATGTGAGACTT...TGCCATTTCATCACTGGGATTCTGAACAGGCGCCAAGCTAACAGGTGGAGAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CCA 90 bp GATGATGAAGGAGTGGATGAGCATATTCTGAGATCCCGGGCAACTGGAAAATCATGCCATACTGAAGACTaGTTCTATGGAAACTGTCCA +
Preference number: 4 (lower is better)
Translates to: DDEGVDEHILRSRATGKSCHTED*FYGNCP
Trigger: TGGACAGTTTCCATAGAACCAGTCTTCAGTATGGCA...TGATTTTCCAGTTGCCCGGGATCTCAGAATATGCTCATCCACTCCTTCATCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp GAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCTGCCATACTGAAGACTaGTTCTATGGAAACTGTCCA +
Preference number: 4 (lower is better)
Translates to: ELVQKRGAIDISHKSALSCHTED*FYGNCP
Trigger: TGGACAGTTTCCATAGAACCAGTCTTCAGTATGGCA...GGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CCA 90 bp AGGAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTAAGTCTCACATTTTATaGTGGCTTTATCCTCTCGGT +
Preference number: 4 (lower is better)
Translates to: RNWSRREGQLIFLINLPCKSHIL*WLYPLG
Trigger: ACCGAGAGGATAAAGCCACCATAAAATGTGAGACTT...ACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 90 bp CCCCGCCGTCCCGGCTTCCGGCATGATCTTCTTAGGCGGGGCAGGTaGAGGCTGCAGCGGACCCAGCGTGGACACACGGAAGCCCGCCGG +
Preference number: 5 (lower is better)
Translates to: PRRPGFRHDLLRRGR*RLQRTQRGHTEARR
Trigger: CCGGCGGGCTTCCGTGTGTCCACGCTGGGTCCGCTGCAGCCTCCACCTGCCCCGCCTAAGAAGATCATGCCGGAAGCCGGGACGGCGGGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
CDS GCA 90 bp GTCCCGGCTTCCGGCATGATCTTCTTAGGCGGGGCAGGTGGAGGCTaGAGCGGACCCAGCGTGGACACACGGAAGCCCGCCGGGAGGGTC +
Preference number: 5 (lower is better)
Translates to: VPASGMIFLGGAGGG*SGPSVDTRKPAGRV
Trigger: GACCCTCCCGGCGGGCTTCCGTGTGTCCACGCTGGGTCCGCTGCAGCCTCCACCTGCCCCGCCTAAGAAGATCATGCCGGAAGCCGGGAC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
CDS TCA 90 bp GCCGGGAGGGTCTCCGCTGAGGTGCCCAACATGCCACCGCTATGGTaGTCCCGAGGCCGGAAGCGTTTCCTCCAGGAGGGTGCTCGGCGG +
Preference number: 5 (lower is better)
Translates to: AGRVSAEVPNMPPLW*SRGRKRFLQEGARR
Trigger: CCGCCGAGCACCCTCCTGGAGGAAACGCTTCCGGCCTCGGGATCACCATAGCGGTGGCATGTTGGGCACCTCAGCGGAGACCCTCCCGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS TCA 90 bp CGGACCCAGCGTGGACACACGGAAGCCCGCCGGGAGGGTCTCCGCTaGGGTGCCCAACATGCCACCGCTATGGTGATCCCGAGGCCGGAA +
Preference number: 5 (lower is better)
Translates to: RTQRGHTEARREGLR*GAQHATAMVIPRPE
Trigger: TTCCGGCCTCGGGATCACCATAGCGGTGGCATGTTGGGCACCTCAGCGGAGACCCTCCCGGCGGGCTTCCGTGTGTCCACGCTGGGTCCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS GCA 90 bp CCAGCGTGGACACACGGAAGCCCGCCGGGAGGGTCTCCGCTGAGGTaGCCAACATGCCACCGCTATGGTGATCCCGAGGCCGGAAGCGTT +
Preference number: 5 (lower is better)
Translates to: PAWTHGSPPGGSPLR*PTCHRYGDPEAGSV
Trigger: AACGCTTCCGGCCTCGGGATCACCATAGCGGTGGCATGTTGGGCACCTCAGCGGAGACCCTCCCGGCGGGCTTCCGTGTGTCCACGCTGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS GCA 90 bp ACACACGGAAGCCCGCCGGGAGGGTCTCCGCTGAGGTGCCCAACATaGCACCGCTATGGTGATCCCGAGGCCGGAAGCGTTTCCTCCAGG +
Preference number: 5 (lower is better)
Translates to: THGSPPGGSPLRCPT*HRYGDPEAGSVSSR
Trigger: CCTGGAGGAAACGCTTCCGGCCTCGGGATCACCATAGCGGTGGCATGTTGGGCACCTCAGCGGAGACCCTCCCGGCGGGCTTCCGTGTGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 90 bp GAAAGGGCGGTCAGAGAGGTGGGGATAGAGCCACGCTTGCGCAGCTaGGTCAGGTTGAGGGCCTCCATGCTGCCGCTGGTCACACGGGTC +
Preference number: 5 (lower is better)
Translates to: ERAVREVGIEPRLRS*VRLRASMLPLVTRV
Trigger: GACCCGTGTGACCAGCGGCAGCATGGAGGCCCTCAACCTGACCCAGCTGCGCAAGCGTGGCTCTATCCCCACCTCTCTGACCGCCCTTTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 90 bp ATAGTGGGAGTGAGCTTCCGGCATGATCTTCTTAGGCGGGGCAGGTaGAGGCTGCAGCGGACCCAGCGTGGACACACGGAAGCCCGCCGG +
Preference number: 5 (lower is better)
Translates to: IVGVSFRHDLLRRGR*RLQRTQRGHTEARR
Trigger: CCGGCGGGCTTCCGTGTGTCCACGCTGGGTCCGCTGCAGCCTCCACCTGCCCCGCCTAAGAAGATCATGCCGGAAGCTCACTCCCACTAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS GCA 90 bp TCGGGAAGTGAGCTTGGGTGTGGAGCGGCCACTGAGCGGTGGAGATaGACTGGCCAGGGAAAGGGCGGTCAGAGAGGTGGGGATAGAGCC +
Preference number: 5 (lower is better)
Translates to: SGSELGCGAATERWR*TGQGKGGQRGGDRA
Trigger: GGCTCTATCCCCACCTCTCTGACCGCCCTTTCCCTGGCCAGTGCATCTCCACCGCTCAGTGGCCGCTCCACACCCAAGCTCACTTCCCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 90 bp GTCACTGTCAAAGGCAGGCGTGGTGGCGCCCAACACCCCTGGCAGTaGCGATGGCTTCCAGTCCTTGGCAGATTCATCCCTCAGCGCCGA +
Preference number: 5 (lower is better)
Translates to: VTVKGRRGGAQHPWQ*RWLPVLGRFIPQRR
Trigger: TCGGCGCTGAGGGATGAATCTGCCAAGGACTGGAAGCCATCGCCACTGCCAGGGGTGTTGGGCGCCACCACGCCTGCCTTTGACAGTGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 90 bp AGCACTTCGGGAAGTGAGCTTGGGTGTGGAGCGGCCACTGAGCGGTaGAGATGCACTGGCCAGGGAAAGGGCGGTCAGAGAGGTGGGGAT +
Preference number: 5 (lower is better)
Translates to: STSGSELGCGAATER*RCTGQGKGGQRGGD
Trigger: ATCCCCACCTCTCTGACCGCCCTTTCCCTGGCCAGTGCATCTCCACCGCTCAGTGGCCGCTCCACACCCAAGCTCACTTCCCGAAGTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp CTAGGCAAGGGGCTGAAGAGTTCCCCTTGCCCTCACCCTGGGCCCAAAGCTCTGCTCAGCTCCTCTGACTaGATGAGGTCTCGGCGGGCC +
Preference number: 5 (lower is better)
Translates to: LGKGLKSSPCPHPGPKALLSSSD*MRSRRA
Trigger: GGCCCGCCGAGACCTCATCAAGTCAGAGGAGCTGAG...CAGAGCTTTGGGCCCAGGGTGAGGGCAAGGGGAACTCTTCAGCCCCTTGCCTAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp CTAGGCAAGGGGCTGAAGAGTTCCCCTTGCCCTCACCCTGGGCCCAAAGCTCTGACTCTTGCCCTCCTCTaGACTCAGGCCAGGGTGGCC +
Preference number: 5 (lower is better)
Translates to: LGKGLKSSPCPHPGPKALTLALL*TQARVA
Trigger: GGCCACCCTGGCCTGAGTCAAGAGGAGGGCAAGAGT...CAGAGCTTTGGGCCCAGGGTGAGGGCAAGGGGAACTCTTCAGCCCCTTGCCTAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS GCA 90 bp GCGCGTGTGTGGCTGTACTCAGTGAGAACCTCACATCTGCTGCGCTaGCCACGTGTGACCTGGAGTGGATGCCATCCACAAACGGCCCCC +
Preference number: 5 (lower is better)
Translates to: ARVWLYSVRTSHLLR*PRVTWSGCHPQTAP
Trigger: GGGGGCCGTTTGTGGATGGCATCCACTCCAGGTCACACGTGGGCAGCGCAGCAGATGTGAGGTTCTCACTGAGTACAGCCACACACGCGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 90 bp TGGTGGCGCCCAACACCCCTGGCAGTGGCGATGGCTTCCAGTCCTTaGCAGATTCATCCCTCAGCGCCGAATAGCGTCGATGCAGACCTG +
Preference number: 5 (lower is better)
Translates to: WWRPTPLAVAMASSP*QIHPSAPNSVDADL
Trigger: CAGGTCTGCATCGACGCTATTCGGCGCTGAGGGATGAATCTGCCAAGGACTGGAAGCCATCGCCACTGCCAGGGGTGTTGGGCGCCACCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 90 bp CTCAGGGTCACTGTCAAAGGCAGGCGTGGTGGCGCCCAACACCCCTaGCAGTGGCGATGGCTTCCAGTCCTTGGCAGATTCATCCCTCAG +
Preference number: 5 (lower is better)
Translates to: LRVTVKGRRGGAQHP*QWRWLPVLGRFIPQ
Trigger: CTGAGGGATGAATCTGCCAAGGACTGGAAGCCATCGCCACTGCCAGGGGTGTTGGGCGCCACCACGCCTGCCTTTGACAGTGACCCTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp CTAGGCAAGGGGCTGAAGAGTTCCCCTTGCCCTCACCCTGGGCCCAAAGCTCTGCTTCTCCAAGAGTCCTaGCAGCTCTTCCACGCGGCC +
Preference number: 5 (lower is better)
Translates to: LGKGLKSSPCPHPGPKALLLQES*QLFHAA
Trigger: GGCCGCGTGGAAGAGCTGCAAGGACTCTTGGAGAAG...CAGAGCTTTGGGCCCAGGGTGAGGGCAAGGGGAACTCTTCAGCCCCTTGCCTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp GCCCTCACCCTGGGCCCAAAGCTCTGGGGTCCATTCCTCCCACACATTTGGGGTGGCAGAGTCTCTGCCTaGCGCATGGTCTGCTGCAAC +
Preference number: 5 (lower is better)
Translates to: ALTLGPKLWGPFLPHIWGGRVSA*RMVCCN
Trigger: GTTGCAGCAGACCATGCGCAAGGCAGAGACTCTGCC...ACCCCAAATGTGTGGGAGGAATGGACCCCAGAGCTTTGGGCCCAGGGTGAGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS GCA 90 bp TGTTGCTGCTGCTGGGGTTGCTGTCCTGACCCTCCAAGGCACTCTTaGCCTCCTCTTGACTCAGGCCAGGGTGGCCAAGCTTCTCTAGCC +
Preference number: 5 (lower is better)
Translates to: CCCCWGCCPDPPRHS*PPLDSGQGGQASLA
Trigger: GGCTAGAGAAGCTTGGCCACCCTGGCCTGAGTCAAGAGGAGGGCAAGAGTGCCTTGGAGGGTCAGGACAGCAACCCCAGCAGCAGCAACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 90 bp CATCCACATCAGAGATCTCAGGGTCACTGTCAAAGGCAGGCGTGGTaGCGCCCAACACCCCTGGCAGTGGCGATGGCTTCCAGTCCTTGG +
Preference number: 5 (lower is better)
Translates to: HPHQRSQGHCQRQAW*RPTPLAVAMASSPW
Trigger: CCAAGGACTGGAAGCCATCGCCACTGCCAGGGGTGTTGGGCGCCACCACGCCTGCCTTTGACAGTGACCCTGAGATCTCTGATGTGGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 90 bp CCTCATCCACATCAGAGATCTCAGGGTCACTGTCAAAGGCAGGCGTaGTGGCGCCCAACACCCCTGGCAGTGGCGATGGCTTCCAGTCCT +
Preference number: 5 (lower is better)
Translates to: PHPHQRSQGHCQRQA*WRPTPLAVAMASSP
Trigger: AGGACTGGAAGCCATCGCCACTGCCAGGGGTGTTGGGCGCCACCACGCCTGCCTTTGACAGTGACCCTGAGATCTCTGATGTGGATGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp ACCTGGGTGCCCGACAGACACTCACGGGAGACCTTGGTCACATCCTCCAGAGACGGCAGAGTCTCTGCCTaGCGCATGGTCTGCTGCAAC +
Preference number: 5 (lower is better)
Translates to: TWVPDRHSRETLVTSSRDGRVSA*RMVCCN
Trigger: GTTGCAGCAGACCATGCGCAAGGCAGAGACTCTGCC...GTCTCTGGAGGATGTGACCAAGGTCTCCCGTGAGTGTCTGTCGGGCACCCAGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp CACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATCACCCACCCTCCCGCTGGCGCACCCTaGCCAGCTCCTGGTTCTTCT +
Preference number: 5 (lower is better)
Translates to: HSPGTFPSSSISGSITHPPAGAP*PAPGSS
Trigger: AGAAGAACCAGGAGCTGGCAAGGGTGCGCCAGCGGG...AGGGTGGGTGATAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp CTAGGCAAGGGGCTGAAGAGTTCCCCTTGCCCTCACCCTGGGCCCAAAGCTCTGCAGCTGGTCCACCTCTaGGCGCAGCTTCTCAATCTC +
Preference number: 5 (lower is better)
Translates to: LGKGLKSSPCPHPGPKALQLVHL*AQLLNL
Trigger: GAGATTGAGAAGCTGCGCCAAGAGGTGGACCAGCTG...CAGAGCTTTGGGCCCAGGGTGAGGGCAAGGGGAACTCTTCAGCCCCTTGCCTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp CTGAGCCAATACAGTACTGAGAAGGGACCTGGTTTGACACAGGAGGCTGGCAGGCCCGCTGGCGCACCCTaGCCAGCTCCTGGTTCTTCT +
Preference number: 5 (lower is better)
Translates to: LSQYSTEKGPGLTQEAGRPAGAP*PAPGSS
Trigger: AGAAGAACCAGGAGCTGGCAAGGGTGCGCCAGCGGG...CCTGCCAGCCTCCTGTGTCAAACCAGGTCCCTTCTCAGTACTGTATTGGCTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CAA 90 bp CAAAGCAGCTACTCCAGTCACCTCCAGGATGGCACTGTACTGCCGGTCACAAGCGCAGCCATTCGCTCCTaGAGGTGGAGCTGCAGGCGT +
Preference number: 5 (lower is better)
Translates to: QSSYSSHLQDGTVLPVTSAAIRS*RWSCRR
Trigger: ACGCCTGCAGCTCCACCTCAAGGAGCGAATGGCTGC...GCTTGTGACCGGCAGTACAGTGCCATCCTGGAGGTGACTGGAGTAGCTGCTTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp CAAACACCTACAACCTGGGTGCCCGACAGACACTCACGGGAGACCTTGGTCACAACTCTTGCCCTCCTCTaGACTCAGGCCAGGGTGGCC +
Preference number: 5 (lower is better)
Translates to: QTPTTWVPDRHSRETLVTTLALL*TQARVA
Trigger: GGCCACCCTGGCCTGAGTCAAGAGGAGGGCAAGAGT...TGTGACCAAGGTCTCCCGTGAGTGTCTGTCGGGCACCCAGGTTGTAGGTGTTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp AAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATCACCCACTTGCGCTTGGCGCCCTaGTGCAGGGAGTCCTGGCTG +
Preference number: 5 (lower is better)
Translates to: KHSPGTFPSSSISGSITHLRLAP*CRESWL
Trigger: CAGCCAGGACTCCCTGCACAAGGGCGCCAAGCGCAA...GTGGGTGATAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp GAGAAAGGGAACGAGCAGGAAGGGTCAGGGCCGGCTGAGCCTGTGAAACCAGGACGTGGGGCCATCCCATaGGGCAAAGGGCATTCCTTT +
Preference number: 5 (lower is better)
Translates to: EKGNEQEGSGPAEPVKPGRGAIP*GKGHSF
Trigger: AAAGGAATGCCCTTTGCCCAATGGGATGGCCCCACG...TCCTGGTTTCACAGGCTCAGCCGGCCCTGACCCTTCCTGCTCGTTCCCTTTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS GCA 90 bp ACCGCTATGGTGATCCCGAGGCCGGAAGCGTTTCCTCCAGGAGGGTaGTCGGCGGAACACCTTCTCTTCTCCGTCATCCAATTTCCTGTC +
Preference number: 5 (lower is better)
Translates to: TAMVIPRPEAFPPGG*SAEHLLFSVIQFPV
Trigger: GACAGGAAATTGGATGACGGAGAAGAGAAGGTGTTCCGCCGAGCACCCTCCTGGAGGAAACGCTTCCGGCCTCGGGATCACCATAGCGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 90 bp GGAGCTGATCTCGCTCGTGAAGGGCATCCTGGAGCCGGCTCTGTGTaGCTACCAAAGTTTCCTGACTCTCCCGAAGGGACTCCAGCAACT +
Preference number: 5 (lower is better)
Translates to: GADLAREGHPGAGSV*LPKFPDSPEGTPAT
Trigger: AGTTGCTGGAGTCCCTTCGGGAGAGTCAGGAAACTTTGGTAGCCACACAGAGCCGGCTCCAGGATGCCCTTCACGAGCGAGATCAGCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS CCA 90 bp TCGCCGGTCCTTCTCTGCCTGGGTCCCCAACTTAGCAGGTACCATTaGTTCCTGCAGACTGAGCTCGGAGTCTGTGAGCAGAACATGGCC +
Preference number: 5 (lower is better)
Translates to: SPVLLCLGPQLSRYH*FLQTELGVCEQNMA
Trigger: GGCCATGTTCTGCTCACAGACTCCGAGCTCAGTCTGCAGGAACCAATGGTACCTGCTAAGTTGGGGACCCAGGCAGAGAAGGACCGGCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp TGTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACCTCAGCTCCTCTGACTaGATGAGGTCTCGGCGGGCC +
Preference number: 5 (lower is better)
Translates to: CPSLPPTESQTPTTWVPDLSSSD*MRSRRA
Trigger: GGCCCGCCGAGACCTCATCAAGTCAGAGGAGCTGAG...GTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp CTAGGCAAGGGGCTGAAGAGTTCCCCTTGCCCTCACCCTGGGCCCAAAGCTCTGTGCAGGGATTCCTTGTaGGCCAGCTCATTCTCCAGT +
Preference number: 5 (lower is better)
Translates to: LGKGLKSSPCPHPGPKALCRDSL*ASSFSS
Trigger: ACTGGAGAATGAGCTGGCCAACAAGGAATCCCTGCA...CAGAGCTTTGGGCCCAGGGTGAGGGCAAGGGGAACTCTTCAGCCCCTTGCCTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp GCCCTCACCCTGGGCCCAAAGCTCTGGGGTCCATTCCTCCCACACATTTGGGGTTGCAGGGATTCCTTGTaGGCCAGCTCATTCTCCAGT +
Preference number: 5 (lower is better)
Translates to: ALTLGPKLWGPFLPHIWGCRDSL*ASSFSS
Trigger: ACTGGAGAATGAGCTGGCCAACAAGGAATCCCTGCA...ACCCCAAATGTGTGGGAGGAATGGACCCCAGAGCTTTGGGCCCAGGGTGAGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp GCAAGACTTGCAGGCAAGAGCTACAGACACTGGAGATTGGGGTTTGGGGAGGAGGCAGCCATTCGCTCCTaGAGGTGGAGCTGCAGGCGT +
Preference number: 5 (lower is better)
Translates to: ARLAGKSYRHWRLGFGEEAAIRS*RWSCRR
Trigger: ACGCCTGCAGCTCCACCTCAAGGAGCGAATGGCTGC...CTCCTCCCCAAACCCCAATCTCCAGTGTCTGTAGCTCTTGCCTGCAAGTCTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp GGAAGCACAAAAGGCCATCAGGCCATCTCTCTAGGCAAGGGGCTGAAGAGTTCCTTGATGCCCTTGCGCTaGGCGCCCTTGTGCAGGGAG +
Preference number: 5 (lower is better)
Translates to: GSTKGHQAISLGKGLKSSLMPLR*APLCRE
Trigger: CTCCCTGCACAAGGGCGCCAAGCGCAAGGGCATCAA...GGAACTCTTCAGCCCCTTGCCTAGAGAGATGGCCTGATGGCCTTTTGTGCTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp AAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATCACCCACTTGATGCCCTTGCGCTaGGCGCCCTTGTGCAGGGAG +
Preference number: 5 (lower is better)
Translates to: KHSPGTFPSSSISGSITHLMPLR*APLCRE
Trigger: CTCCCTGCACAAGGGCGCCAAGCGCAAGGGCATCAA...GTGGGTGATAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp CACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATCACCCACCCTGATGACTTGATGCCCTaGCGCTTGGCGCCCTTGTGC +
Preference number: 5 (lower is better)
Translates to: HSPGTFPSSSISGSITHPDDLMP*RLAPLC
Trigger: GCACAAGGGCGCCAAGCGCAAGGGCATCAAGTCATC...AGGGTGGGTGATAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS GCA 90 bp TCCTTCTCTGCCTGGGTCCCCAACTTAGCAGGTACCATTGGTTCCTaGAGACTGAGCTCGGAGTCTGTGAGCAGAACATGGCCCGTGGCA +
Preference number: 5 (lower is better)
Translates to: SFSAWVPNLAGTIGS*RLSSESVSRTWPVA
Trigger: TGCCACGGGCCATGTTCTGCTCACAGACTCCGAGCTCAGTCTGCAGGAACCAATGGTACCTGCTAAGTTGGGGACCCAGGCAGAGAAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp TCTGGTAGGGAGACAGAAACAGCGGGCTTGAGGACGGGTAGTTGCCTGCCCCAGTGCTCAAATAGTGACTaGAGGGCCTTCAGCACCTCC +
Preference number: 5 (lower is better)
Translates to: SGRETETAGLRTGSCLPQCSNSD*RAFSTS
Trigger: GGAGGTGCTGAAGGCCCTCAAGTCACTATTTGAGCA...CTGGGGCAGGCAACTACCCGTCCTCAAGCCCGCTGTTTCTGTCTCCCTACCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
CDS-3UTR CAA 90 bp TCAGACAGGGAGTTCTGGCTCATTTCTCCACCTGTTAGCTTGGCGCCTGTTCAGTTGATGCCCTTGCGCTaGGCGCCCTTGTGCAGGGAG +
Preference number: 5 (lower is better)
Translates to: SDREFWLISPPVSLAPVQLMPLR*APLCRE
Trigger: CTCCCTGCACAAGGGCGCCAAGCGCAAGGGCATCAA...CTGAACAGGCGCCAAGCTAACAGGTGGAGAAATGAGCCAGAACTCCCTGTCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CAA 90 bp AAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATCACCCACCGGCCAATGGATGACTaGATGCCCTTGCGCTTGGCG +
Preference number: 5 (lower is better)
Translates to: KHSPGTFPSSSISGSITHRPMDD*MPLRLA
Trigger: CGCCAAGCGCAAGGGCATCAAGTCATCCATTGGCCG...GTGGGTGATAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 90 bp TTGCAGCTCTTCCACGCGGCCAGTGTCATCTTTCCACAGGCGTTTTaGTCCCAGATCCACAGTCCCTTCCTCTTCTGCTACTCCATCCCG +
Preference number: 5 (lower is better)
Translates to: LQLFHAASVIFPQAF*SQIHSPFLFCYSIP
Trigger: CGGGATGGAGTAGCAGAAGAGGAAGGGACTGTGGATCTGGGACCAAAACGCCTGTGGAAAGATGACACTGGCCGCGTGGAAGAGCTGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp AGCCAATACAGTACTGAGAAGGGACCTGGTTTGACACAGGAGGCTGGCAGGGAGAGGGGGTCCCCCTCATaGATTGTGGGCATCACCTCA +
Preference number: 5 (lower is better)
Translates to: SQYSTEKGPGLTQEAGRERGSPS*IVGITS
Trigger: TGAGGTGATGCCCACAATCAATGAGGGGGACCCCCT...CTCCCTGCCAGCCTCCTGTGTCAAACCAGGTCCCTTCTCAGTACTGTATTGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
CDS-3UTR CAA 90 bp GGAGGGTATAGGGACACACAAGGGAGCCTGCCTCAGTCCACTTTAGATTTCTTACCCGCTGGCGCACCCTaGCCAGCTCCTGGTTCTTCT +
Preference number: 5 (lower is better)
Translates to: GGYRDTQGSLPQSTLDFLPAGAP*PAPGSS
Trigger: AGAAGAACCAGGAGCTGGCAAGGGTGCGCCAGCGGG...TAAGAAATCTAAAGTGGACTGAGGCAGGCTCCCTTGTGTGTCCCTATACCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp TCCTTTTCAGACAGGGAGTTCTGGCTCATTTCTCCACCTGTTAGCTTGGCGCCTACTCTTGCCCTCCTCTaGACTCAGGCCAGGGTGGCC +
Preference number: 5 (lower is better)
Translates to: SFSDREFWLISPPVSLAPTLALL*TQARVA
Trigger: GGCCACCCTGGCCTGAGTCAAGAGGAGGGCAAGAGT...AGGCGCCAAGCTAACAGGTGGAGAAATGAGCCAGAACTCCCTGTCTGAAAAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CAA 90 bp CTGGCCCTTCTCTATAACTCCACTATTCAGGACCAAGGGTTCTCTCGCTCTAACTTGCGCTTGGCGCCCTaGTGCAGGGAGTCCTGGCTG +
Preference number: 5 (lower is better)
Translates to: LALLYNSTIQDQGFSRSNLRLAP*CRESWL
Trigger: CAGCCAGGACTCCCTGCACAAGGGCGCCAAGCGCAA...GTTAGAGCGAGAGAACCCTTGGTCCTGAATAGTGGAGTTATAGAGAAGGGCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CAA 90 bp TCAGACAGGGAGTTCTGGCTCATTTCTCCACCTGTTAGCTTGGCGCCTGTTCAGGATGACTTGATGCCCTaGCGCTTGGCGCCCTTGTGC +
Preference number: 5 (lower is better)
Translates to: SDREFWLISPPVSLAPVQDDLMP*RLAPLC
Trigger: GCACAAGGGCGCCAAGCGCAAGGGCATCAAGTCATC...CTGAACAGGCGCCAAGCTAACAGGTGGAGAAATGAGCCAGAACTCCCTGTCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CAA 90 bp CCTGATGAGCCCATAGTCCAGACCAAAACAGATCCGGAAGAGGGAAGGTGGCCACGTGGGGCCATCCCATaGGGCAAAGGGCATTCCTTT +
Preference number: 5 (lower is better)
Translates to: PDEPIVQTKTDPEEGRWPRGAIP*GKGHSF
Trigger: AAAGGAATGCCCTTTGCCCAATGGGATGGCCCCACG...TGGCCACCTTCCCTCTTCCGGATCTGTTTTGGTCTGGACTATGGGCTCATCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp GAAACAGCGGGCTTGAGGACGGGTAGTTGCCTGCCCCAGCCCATGTTAGCTCATAAACTGTCCACCATCTaGAGATGGACACGCAGGTCC +
Preference number: 5 (lower is better)
Translates to: ETAGLRTGSCLPQPMLAHKLSTI*RWTRRS
Trigger: GGACCTGCGTGTCCATCTCAAGATGGTGGACAGTTT...ATGAGCTAACATGGGCTGGGGCAGGCAACTACCCGTCCTCAAGCCCGCTGTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS TCA 90 bp CTCCGTCATCCAATTTCCTGTCTGTGCCCAAGGCCAACAGGTTATTaGACTCTCTCTCCATCACTTGGCGGGCCTGGGTGCTCTGTGTGG +
Preference number: 5 (lower is better)
Translates to: LRHPISCLCPRPTGY*TLSPSLGGPGCSVW
Trigger: CCACACAGAGCACCCAGGCCCGCCAAGTGATGGAGAGAGAGTTCAATAACCTGTTGGCCTTGGGCACAGACAGGAAATTGGATGACGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp GCCCTCACCCTGGGCCCAAAGCTCTGGGGTCCATTCCTCCCACACATTTGGGGTTTCTCCAGTTTGTCATaGAGGTCATGGATGGATGTG +
Preference number: 5 (lower is better)
Translates to: ALTLGPKLWGPFLPHIWGFSSLS*RSWMDV
Trigger: CACATCCATCCATGACCTCAATGACAAACTGGAGAA...ACCCCAAATGTGTGGGAGGAATGGACCCCAGAGCTTTGGGCCCAGGGTGAGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp CCGGTCACAAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATGCAGGGATTCCTTGTaGGCCAGCTCATTCTCCAGT +
Preference number: 5 (lower is better)
Translates to: PVTSTAQALSRPLPFRVLCRDSL*ASSFSS
Trigger: ACTGGAGAATGAGCTGGCCAACAAGGAATCCCTGCA...TAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTTGTGACCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp GGACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTCATCTCAGTCTTTGGTCCGGCAGCCATTCGCTCCTaGAGGTGGAGCTGCAGGCGT +
Preference number: 5 (lower is better)
Translates to: GQSPKWPFIGRVISVFGPAAIRS*RWSCRR
Trigger: ACGCCTGCAGCTCCACCTCAAGGAGCGAATGGCTGC...CGGACCAAAGACTGAGATGACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp AAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATCACCCACGATGGCTTCCAGTCCTaGGCAGATTCATCCCTCAGC +
Preference number: 5 (lower is better)
Translates to: KHSPGTFPSSSISGSITHDGFQS*ADSSLS
Trigger: GCTGAGGGATGAATCTGCCAAGGACTGGAAGCCATC...GTGGGTGATAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp AGCAGGACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTCATCTCAGTCTTTGGTTGCGCTTGGCGCCCTaGTGCAGGGAGTCCTGGCTG +
Preference number: 5 (lower is better)
Translates to: SRTESEMAFYWKGHLSLWLRLAP*CRESWL
Trigger: CAGCCAGGACTCCCTGCACAAGGGCGCCAAGCGCAA...CCAAAGACTGAGATGACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCCTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp GAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCCACCGTGCTGCCAGAGATGACTTGATGCCCTaGCGCTTGGCGCCCTTGTGC +
Preference number: 5 (lower is better)
Translates to: EGQLIFLINLPCPHRAARDDLMP*RLAPLC
Trigger: GCACAAGGGCGCCAAGCGCAAGGGCATCAAGTCATC...TCTGGCAGCACGGTGGGGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp CTCCACTCCTGGCTTTGTCCTGGAAGAGGGTTCGGGGTATTCTACACCCCTCGTCAGACCAGCACATCCTaGATCTCATGCTGGCTCTCT +
Preference number: 5 (lower is better)
Translates to: LHSWLCPGRGFGVFYTPRQTSTS*ISCWLS
Trigger: AGAGAGCCAGCATGAGATCAAGGATGTGCTGGTCTG...ACGAGGGGTGTAGAATACCCCGAACCCTCTTCCAGGACAAAGCCAGGAGTGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 90 bp TCAAGCAGCTGGTGTTTCTTTTTCAGTCGCCGGTCCTTCTCTGCCTaGGTCCCCAACTTAGCAGGTACCATTGGTTCCTGCAGACTGAGC +
Preference number: 5 (lower is better)
Translates to: SSSWCFFFSRRSFSA*VPNLAGTIGSCRLS
Trigger: GCTCAGTCTGCAGGAACCAATGGTACCTGCTAAGTTGGGGACCCAGGCAGAGAAGGACCGGCGACTGAAAAAGAAACACCAGCTGCTTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp TCAGACAGGGAGTTCTGGCTCATTTCTCCACCTGTTAGCTTGGCGCCTGTTCAGCTTTCCACAGGCGTTTaGGTCCCAGATCCACAGTCC +
Preference number: 5 (lower is better)
Translates to: SDREFWLISPPVSLAPVQLSTGV*VPDPQS
Trigger: GGACTGTGGATCTGGGACCAAAACGCCTGTGGAAAG...CTGAACAGGCGCCAAGCTAACAGGTGGAGAAATGAGCCAGAACTCCCTGTCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
CDS-3UTR CAA 90 bp AGGGCTCCTTCCATCTTAGGACTGGCCCTTCTCTATAACTCCACTATTCAGGACGGCAGAGTCTCTGCCTaGCGCATGGTCTGCTGCAAC +
Preference number: 5 (lower is better)
Translates to: RAPSILGLALLYNSTIQDGRVSA*RMVCCN
Trigger: GTTGCAGCAGACCATGCGCAAGGCAGAGACTCTGCC...GTCCTGAATAGTGGAGTTATAGAGAAGGGCCAGTCCTAAGATGGAAGGAGCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CAA 90 bp GCATCCTTTTCAGACAGGGAGTTCTGGCTCATTTCTCCACCTGTTAGCTTGGCGCAGCTGGTCCACCTCTaGGCGCAGCTTCTCAATCTC +
Preference number: 5 (lower is better)
Translates to: ASFSDREFWLISPPVSLAQLVHL*AQLLNL
Trigger: GAGATTGAGAAGCTGCGCCAAGAGGTGGACCAGCTG...CGCCAAGCTAACAGGTGGAGAAATGAGCCAGAACTCCCTGTCTGAAAAGGATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CAA 90 bp GGAGGGTATAGGGACACACAAGGGAGCCTGCCTCAGTCCACTTTAGATTTCTTACGGCCAATGGATGACTaGATGCCCTTGCGCTTGGCG +
Preference number: 5 (lower is better)
Translates to: GGYRDTQGSLPQSTLDFLRPMDD*MPLRLA
Trigger: CGCCAAGCGCAAGGGCATCAAGTCATCCATTGGCCG...TAAGAAATCTAAAGTGGACTGAGGCAGGCTCCCTTGTGTGTCCCTATACCCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp CCTGATGAGCCCATAGTCCAGACCAAAACAGATCCGGAAGAGGGAAGGTGGCCAAAACTGTCCACCATCTaGAGATGGACACGCAGGTCC +
Preference number: 5 (lower is better)
Translates to: PDEPIVQTKTDPEEGRWPKLSTI*RWTRRS
Trigger: GGACCTGCGTGTCCATCTCAAGATGGTGGACAGTTT...TGGCCACCTTCCCTCTTCCGGATCTGTTTTGGTCTGGACTATGGGCTCATCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp AAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATCACCCACCAGACCAGCACATCCTaGATCTCATGCTGGCTCTCT +
Preference number: 5 (lower is better)
Translates to: KHSPGTFPSSSISGSITHQTSTS*ISCWLS
Trigger: AGAGAGCCAGCATGAGATCAAGGATGTGCTGGTCTG...GTGGGTGATAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp CCGGTCACAAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTAACCAAGGCCAGTGTGTaGTGGTCGAAGTTTTCATCC +
Preference number: 5 (lower is better)
Translates to: PVTSTAQALSRPLPFRVLTKASV*WSKFSS
Trigger: GGATGAAAACTTCGACCACAACACACTGGCCTTGGT...TAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTTGTGACCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp TTAGCCAAACTTCCCTCTGCTGAGCACAAGGCTCGGCATCCTTTTCAGACAGGGAAACTGTCCACCATCTaGAGATGGACACGCAGGTCC +
Preference number: 5 (lower is better)
Translates to: LAKLPSAEHKARHPFQTGKLSTI*RWTRRS
Trigger: GGACCTGCGTGTCCATCTCAAGATGGTGGACAGTTT...CCCTGTCTGAAAAGGATGCCGAGCCTTGTGCTCAGCAGAGGGAAGTTTGGCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CAA 90 bp AAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATCACCCACACCAAGGCCAGTGTGTaGTGGTCGAAGTTTTCATCC +
Preference number: 5 (lower is better)
Translates to: KHSPGTFPSSSISGSITHTKASV*WSKFSS
Trigger: GGATGAAAACTTCGACCACAACACACTGGCCTTGGT...GTGGGTGATAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS GCA 90 bp ATCTTCAAGCAGCTGGTGTTTCTTTTTCAGTCGCCGGTCCTTCTCTaGCTGGGTCCCCAACTTAGCAGGTACCATTGGTTCCTGCAGACT +
Preference number: 5 (lower is better)
Translates to: IFKQLVFLFQSPVLL*LGPQLSRYHWFLQT
Trigger: AGTCTGCAGGAACCAATGGTACCTGCTAAGTTGGGGACCCAGGCAGAGAAGGACCGGCGACTGAAAAAGAAACACCAGCTGCTTGAAGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp AGCAGGACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTCATCTCAGTCTTTGGAGGGGGTCCCCCTCATaGATTGTGGGCATCACCTCA +
Preference number: 5 (lower is better)
Translates to: SRTESEMAFYWKGHLSLWRGSPS*IVGITS
Trigger: TGAGGTGATGCCCACAATCAATGAGGGGGACCCCCT...CCAAAGACTGAGATGACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCCTGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp AAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCCACCGTGCTGCGATGGCTTCCAGTCCTaGGCAGATTCATCCCTCAGC +
Preference number: 5 (lower is better)
Translates to: KRGAIDISHKSALSPPCCDGFQS*ADSSLS
Trigger: GCTGAGGGATGAATCTGCCAAGGACTGGAAGCCATC...GCAGCACGGTGGGGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp GATGATGAAGGAGTGGATGAGCATATTCTGAGATCCCGGGCAACTGGAAAATCACGGCCAATGGATGACTaGATGCCCTTGCGCTTGGCG +
Preference number: 5 (lower is better)
Translates to: DDEGVDEHILRSRATGKSRPMDD*MPLRLA
Trigger: CGCCAAGCGCAAGGGCATCAAGTCATCCATTGGCCG...TGATTTTCCAGTTGCCCGGGATCTCAGAATATGCTCATCCACTCCTTCATCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp TCCAGAAGGCCAATTAGTCCAAGCAGGACAGAGTCCGAAATGGCCTTTTATTGGCGTGGGGCCATCCCATaGGGCAAAGGGCATTCCTTT +
Preference number: 5 (lower is better)
Translates to: SRRPISPSRTESEMAFYWRGAIP*GKGHSF
Trigger: AAAGGAATGCCCTTTGCCCAATGGGATGGCCCCACG...CCAATAAAAGGCCATTTCGGACTCTGTCCTGCTTGGACTAATTGGCCTTCTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp TTAGCCAAACTTCCCTCTGCTGAGCACAAGGCTCGGCATCCTTTTCAGACAGGGACCAAGGCCAGTGTGTaGTGGTCGAAGTTTTCATCC +
Preference number: 5 (lower is better)
Translates to: LAKLPSAEHKARHPFQTGTKASV*WSKFSS
Trigger: GGATGAAAACTTCGACCACAACACACTGGCCTTGGT...CCCTGTCTGAAAAGGATGCCGAGCCTTGTGCTCAGCAGAGGGAAGTTTGGCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CAA 90 bp GAATTGGTCCAGAAGAGAGGGGCAATTGATATTTCTCATAAATCTGCCCTGTCCCTTCTCCAAGAGTCCTaGCAGCTCTTCCACGCGGCC +
Preference number: 5 (lower is better)
Translates to: ELVQKRGAIDISHKSALSLLQES*QLFHAA
Trigger: GGCCGCGTGGAAGAGCTGCAAGGACTCTTGGAGAAG...GGACAGGGCAGATTTATGAGAAATATCAATTGCCCCTCTCTTCTGGACCAATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp TGTCCTTCCCTCCCTCCTACAGAATCTCAAACACCTACAACCTGGGTGCCCGACTTCTCCAGTTTGTCATaGAGGTCATGGATGGATGTG +
Preference number: 5 (lower is better)
Translates to: CPSLPPTESQTPTTWVPDFSSLS*RSWMDV
Trigger: CACATCCATCCATGACCTCAATGACAAACTGGAGAA...GTCGGGCACCCAGGTTGTAGGTGTTTGAGATTCTGTAGGAGGGAGGGAAGGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp CCTGATGAGCCCATAGTCCAGACCAAAACAGATCCGGAAGAGGGAAGGTGGCCAAAGGCCAACAGGTTATaGAACTCTCTCTCCATCACT +
Preference number: 5 (lower is better)
Translates to: PDEPIVQTKTDPEEGRWPKANRL*NSLSIT
Trigger: AGTGATGGAGAGAGAGTTCAATAACCTGTTGGCCTT...TGGCCACCTTCCCTCTTCCGGATCTGTTTTGGTCTGGACTATGGGCTCATCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp AAGCACAGCCCAGGCACTTTCCCGTCCTCTTCCATTTCGGGTTCTATCACCCACAAGGCCAACAGGTTATaGAACTCTCTCTCCATCACT +
Preference number: 5 (lower is better)
Translates to: KHSPGTFPSSSISGSITHKANRL*NSLSIT
Trigger: AGTGATGGAGAGAGAGTTCAATAACCTGTTGGCCTT...GTGGGTGATAGAACCCGAAATGGAAGAGGACGGGAAAGTGCCTGGGCTGTGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp GATGATGAAGGAGTGGATGAGCATATTCTGAGATCCCGGGCAACTGGAAAATCATGCTCAAATAGTGACTaGAGGGCCTTCAGCACCTCC +
Preference number: 5 (lower is better)
Translates to: DDEGVDEHILRSRATGKSCSNSD*RAFSTS
Trigger: GGAGGTGCTGAAGGCCCTCAAGTCACTATTTGAGCA...TGATTTTCCAGTTGCCCGGGATCTCAGAATATGCTCATCCACTCCTTCATCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp GGCAGGGAGAGCTTGGGTCACTGGTGGACTCTCCAGAGAAAACAGATATTGACATCCTCACTGTCTGTTTaGGTAGATGTTGCCAGAGTT +
Preference number: 5 (lower is better)
Translates to: GRESLGHWWTLQRKQILTSSLSV*VDVARV
Trigger: AACTCTGGCAACATCTACCAAAACAGACAGTGAGGA...TGTCAATATCTGTTTTCTCTGGAGAGTCCACCAGTGACCCAAGCTCTCCCTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
CDS-3UTR CAA 90 bp GCACAGAGTTTCTACCTTAGTCTTCCTCAGCTCCACTCCTGGCTTTGTCCTGGATCCTCACTGTCTGTTTaGGTAGATGTTGCCAGAGTT +
Preference number: 5 (lower is better)
Translates to: AQSFYLSLPQLHSWLCPGSSLSV*VDVARV
Trigger: AACTCTGGCAACATCTACCAAAACAGACAGTGAGGA...TCCAGGACAAAGCCAGGAGTGGAGCTGAGGAAGACTAAGGTAGAAACTCTGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp CTGGCCCTTCTCTATAACTCCACTATTCAGGACCAAGGGTTCTCTCGCTCTAACGCTCAACTCATAGTTTaGCTTCTCCAAGAGTCCTTG +
Preference number: 5 (lower is better)
Translates to: LALLYNSTIQDQGFSRSNAQLIV*LLQESL
Trigger: CAAGGACTCTTGGAGAAGCAAAACTATGAGTTGAGC...GTTAGAGCGAGAGAACCCTTGGTCCTGAATAGTGGAGTTATAGAGAAGGGCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168515.8
CDS-3UTR CAA 90 bp GGACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTCATCTCAGTCTTTGGTCCGGCTCAACTCATAGTTTaGCTTCTCCAAGAGTCCTTG +
Preference number: 5 (lower is better)
Translates to: GQSPKWPFIGRVISVFGPAQLIV*LLQESL
Trigger: CAAGGACTCTTGGAGAAGCAAAACTATGAGTTGAGC...CGGACCAAAGACTGAGATGACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS-3UTR CAA 90 bp CTGGCCCTTCTCTATAACTCCACTATTCAGGACCAAGGGTTCTCTCGCTCTAACTTCTCCAGTTTGTCATaGAGGTCATGGATGGATGTG +
Preference number: 5 (lower is better)
Translates to: LALLYNSTIQDQGFSRSNFSSLS*RSWMDV
Trigger: CACATCCATCCATGACCTCAATGACAAACTGGAGAA...GTTAGAGCGAGAGAACCCTTGGTCCTGAATAGTGGAGTTATAGAGAAGGGCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
CDS-3UTR CAA 90 bp GGACAGAGTCCGAAATGGCCTTTTATTGGAAGGGTCATCTCAGTCTTTGGTCCGAAGGCCAACAGGTTATaGAACTCTCTCTCCATCACT +
Preference number: 5 (lower is better)
Translates to: GQSPKWPFIGRVISVFGPKANRL*NSLSIT
Trigger: AGTGATGGAGAGAGAGTTCAATAACCTGTTGGCCTT...CGGACCAAAGACTGAGATGACCCTTCCAATAAAAGGCCATTTCGGACTCTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS TCA 72 bp CGTGGACACACGGAAGCCCGCCGGGAGGGTCTCCGCTaGGGTGCCCAACATGCCACCGCTATGGTGATCCCG +
Preference number: 6 (lower is better)
Translates to: RGHTEARREGLR*GAQHATAMVIP
Trigger: CGGGATCACCATAGCGGTGGCATGTTGGGCACCTCAGCGGAGACCCTCCCGGCGGGCTTCCGTGTGTCCACG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS GCA 72 bp AGCCCGCCGGGAGGGTCTCCGCTGAGGTGCCCAACATaGCACCGCTATGGTGATCCCGAGGCCGGAAGCGTT +
Preference number: 6 (lower is better)
Translates to: SPPGGSPLRCPT*HRYGDPEAGSV
Trigger: AACGCTTCCGGCCTCGGGATCACCATAGCGGTGGCATGTTGGGCACCTCAGCGGAGACCCTCCCGGCGGGCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS GCA 72 bp ACACACGGAAGCCCGCCGGGAGGGTCTCCGCTGAGGTaGCCAACATGCCACCGCTATGGTGATCCCGAGGCC +
Preference number: 6 (lower is better)
Translates to: THGSPPGGSPLR*PTCHRYGDPEA
Trigger: GGCCTCGGGATCACCATAGCGGTGGCATGTTGGGCACCTCAGCGGAGACCCTCCCGGCGGGCTTCCGTGTGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CAA 90 bp CTGGCCAGGGAAAGGGCGGTCAGAGAGGTGGGGATAGAGCCACGCTaGCGCAGCTGGGTCAGGTTGAGGGCCTCCATGCTGCCGCTGGTC +
Preference number: 6 (lower is better)
Translates to: LARERAVREVGIEPR*RSWVRLRASMLPLV
Trigger: GACCAGCGGCAGCATGGAGGCCCTCAACCTGACCCAGCTGCGCAAGCGTGGCTCTATCCCCACCTCTCTGACCGCCCTTTCCCTGGCCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS GCA 72 bp GAGCTTGGGTGTGGAGCGGCCACTGAGCGGTGGAGATaGACTGGCCAGGGAAAGGGCGGTCAGAGAGGTGGG +
Preference number: 6 (lower is better)
Translates to: ELGCGAATERWR*TGQGKGGQRGG
Trigger: CCCACCTCTCTGACCGCCCTTTCCCTGGCCAGTGCATCTCCACCGCTCAGTGGCCGCTCCACACCCAAGCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CAA 72 bp GTGGGGATAGAGCCACGCTTGCGCAGCTGGGTCAGGTaGAGGGCCTCCATGCTGCCGCTGGTCACACGGGTC +
Preference number: 6 (lower is better)
Translates to: VGIEPRLRSWVR*RASMLPLVTRV
Trigger: GACCCGTGTGACCAGCGGCAGCATGGAGGCCCTCAACCTGACCCAGCTGCGCAAGCGTGGCTCTATCCCCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 72 bp AGGCGTGGTGGCGCCCAACACCCCTGGCAGTGGCGATaGCTTCCAGTCCTTGGCAGATTCATCCCTCAGCGC +
Preference number: 6 (lower is better)
Translates to: RRGGAQHPWQWR*LPVLGRFIPQR
Trigger: GCGCTGAGGGATGAATCTGCCAAGGACTGGAAGCCATCGCCACTGCCAGGGGTGTTGGGCGCCACCACGCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 72 bp GTCAGAGAGGTGGGGATAGAGCCACGCTTGCGCAGCTaGGTCAGGTTGAGGGCCTCCATGCTGCCGCTGGTC +
Preference number: 6 (lower is better)
Translates to: VREVGIEPRLRS*VRLRASMLPLV
Trigger: GACCAGCGGCAGCATGGAGGCCCTCAACCTGACCCAGCTGCGCAAGCGTGGCTCTATCCCCACCTCTCTGAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CAA 90 bp ACCCCCATTCGGTCCAGATCCTGGGCAGCACTTCGGGAAGTGAGCTaGGGTGTGGAGCGGCCACTGAGCGGTGGAGATGCACTGGCCAGG +
Preference number: 6 (lower is better)
Translates to: TPIRSRSWAALREVS*GVERPLSGGDALAR
Trigger: CCTGGCCAGTGCATCTCCACCGCTCAGTGGCCGCTCCACACCCAAGCTCACTTCCCGAAGTGCTGCCCAGGATCTGGACCGAATGGGGGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS TCA 72 bp GGTCCTCCTCCAGCTCAGTCACGGTGGCACTCAGGGTaGCCAGCCGCTCACGGGCCTGGCTCAACTCATAGT +
Preference number: 6 (lower is better)
Translates to: GPPPAQSRWHSG*PAAHGPGSTHS
Trigger: ACTATGAGTTGAGCCAGGCCCGTGAGCGGCTGGTCACCCTGAGTGCCACCGTGACTGAGCTGGAGGAGGACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS CCA 72 bp CAGAGATCTCAGGGTCACTGTCAAAGGCAGGCGTGGTaGCGCCCAACACCCCTGGCAGTGGCGATGGCTTCC +
Preference number: 6 (lower is better)
Translates to: QRSQGHCQRQAW*RPTPLAVAMAS
Trigger: GGAAGCCATCGCCACTGCCAGGGGTGTTGGGCGCCACCACGCCTGCCTTTGACAGTGACCCTGAGATCTCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 72 bp GGAAGTGAGCTTGGGTGTGGAGCGGCCACTGAGCGGTaGAGATGCACTGGCCAGGGAAAGGGCGGTCAGAGA +
Preference number: 6 (lower is better)
Translates to: GSELGCGAATER*RCTGQGKGGQR
Trigger: TCTCTGACCGCCCTTTCCCTGGCCAGTGCATCTCCACCGCTCAGTGGCCGCTCCACACCCAAGCTCACTTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CAA 72 bp GAAAGGGCGGTCAGAGAGGTGGGGATAGAGCCACGCTaGCGCAGCTGGGTCAGGTTGAGGGCCTCCATGCTG +
Preference number: 6 (lower is better)
Translates to: ERAVREVGIEPR*RSWVRLRASML
Trigger: CAGCATGGAGGCCCTCAACCTGACCCAGCTGCGCAAGCGTGGCTCTATCCCCACCTCTCTGACCGCCCTTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CAA 72 bp CGGTCCAGATCCTGGGCAGCACTTCGGGAAGTGAGCTaGGGTGTGGAGCGGCCACTGAGCGGTGGAGATGCA +
Preference number: 6 (lower is better)
Translates to: RSRSWAALREVS*GVERPLSGGDA
Trigger: TGCATCTCCACCGCTCAGTGGCCGCTCCACACCCAAGCTCACTTCCCGAAGTGCTGCCCAGGATCTGGACCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CAA 90 bp GTCAGAGAGGTGGGGATAGAGCCACGCTTGCGCAGCTGGGTCAGGTaGAGGGCCTCCATGCTGCCGCTGGTCACACGGGTCTCAATCTCC +
Preference number: 6 (lower is better)
Translates to: VREVGIEPRLRSWVR*RASMLPLVTRVSIS
Trigger: GGAGATTGAGACCCGTGTGACCAGCGGCAGCATGGAGGCCCTCAACCTGACCCAGCTGCGCAAGCGTGGCTCTATCCCCACCTCTCTGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS GCA 72 bp TGCTGGGGTTGCTGTCCTGACCCTCCAAGGCACTCTTaGCCTCCTCTTGACTCAGGCCAGGGTGGCCAAGCT +
Preference number: 6 (lower is better)
Translates to: CWGCCPDPPRHS*PPLDSGQGGQA
Trigger: AGCTTGGCCACCCTGGCCTGAGTCAAGAGGAGGGCAAGAGTGCCTTGGAGGGTCAGGACAGCAACCCCAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 72 bp AAAGGCAGGCGTGGTGGCGCCCAACACCCCTGGCAGTaGCGATGGCTTCCAGTCCTTGGCAGATTCATCCCT +
Preference number: 6 (lower is better)
Translates to: KGRRGGAQHPWQ*RWLPVLGRFIP
Trigger: AGGGATGAATCTGCCAAGGACTGGAAGCCATCGCCACTGCCAGGGGTGTTGGGCGCCACCACGCCTGCCTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 72 bp ACTGTCAAAGGCAGGCGTGGTGGCGCCCAACACCCCTaGCAGTGGCGATGGCTTCCAGTCCTTGGCAGATTC +
Preference number: 6 (lower is better)
Translates to: TVKGRRGGAQHP*QWRWLPVLGRF
Trigger: GAATCTGCCAAGGACTGGAAGCCATCGCCACTGCCAGGGGTGTTGGGCGCCACCACGCCTGCCTTTGACAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 72 bp CATCAGAGATCTCAGGGTCACTGTCAAAGGCAGGCGTaGTGGCGCCCAACACCCCTGGCAGTGGCGATGGCT +
Preference number: 6 (lower is better)
Translates to: HQRSQGHCQRQA*WRPTPLAVAMA
Trigger: AGCCATCGCCACTGCCAGGGGTGTTGGGCGCCACCACGCCTGCCTTTGACAGTGACCCTGAGATCTCTGATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS GCA 72 bp GTGATCCCGAGGCCGGAAGCGTTTCCTCCAGGAGGGTaGTCGGCGGAACACCTTCTCTTCTCCGTCATCCAA +
Preference number: 6 (lower is better)
Translates to: VIPRPEAFPPGG*SAEHLLFSVIQ
Trigger: TTGGATGACGGAGAAGAGAAGGTGTTCCGCCGAGCACCCTCCTGGAGGAAACGCTTCCGGCCTCGGGATCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 72 bp CCGAATAGCGTCGATGCAGACCTGGGGGCGCGTGTGTaGCTGTACTCAGTGAGAACCTCACATCTGCTGCGC +
Preference number: 6 (lower is better)
Translates to: PNSVDADLGARV*LYSVRTSHLLR
Trigger: GCGCAGCAGATGTGAGGTTCTCACTGAGTACAGCCACACACGCGCCCCCAGGTCTGCATCGACGCTATTCGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 72 bp CTCGCTCGTGAAGGGCATCCTGGAGCCGGCTCTGTGTaGCTACCAAAGTTTCCTGACTCTCCCGAAGGGACT +
Preference number: 6 (lower is better)
Translates to: LAREGHPGAGSV*LPKFPDSPEGT
Trigger: AGTCCCTTCGGGAGAGTCAGGAAACTTTGGTAGCCACACAGAGCCGGCTCCAGGATGCCCTTCACGAGCGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS CCA 72 bp CCAACACCCCTGGCAGTGGCGATGGCTTCCAGTCCTTaGCAGATTCATCCCTCAGCGCCGAATAGCGTCGAT +
Preference number: 6 (lower is better)
Translates to: PTPLAVAMASSP*QIHPSAPNSVD
Trigger: ATCGACGCTATTCGGCGCTGAGGGATGAATCTGCCAAGGACTGGAAGCCATCGCCACTGCCAGGGGTGTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS TCA 72 bp TCCTGGAGCCGGCTCTGTGTGGCTACCAAAGTTTCCTaGCTCTCCCGAAGGGACTCCAGCAACTTCTCTCGC +
Preference number: 6 (lower is better)
Translates to: SWSRLCVATKVS*LSRRDSSNFSR
Trigger: GCGAGAGAAGTTGCTGGAGTCCCTTCGGGAGAGTCAGGAAACTTTGGTAGCCACACAGAGCCGGCTCCAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS GCA 72 bp TCTTCCCGAGACACTGGCGACAGCAGCTTCCTCCTATaGTTTCTTAAGTCGCTGGGCAGGGTCATGACCCCC +
Preference number: 6 (lower is better)
Translates to: SSRDTGDSSFLL*FLKSLGRVMTP
Trigger: GGGGGTCATGACCCTGCCCAGCGACTTAAGAAAGCATAGGAGGAAGCTGCTGTCGCCAGTGTCTCGGGAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CAA 90 bp CTTGCAGCTCTTCCACGCGGCCAGTGTCATCTTTCCACAGGCGTTTaGGTCCCAGATCCACAGTCCCTTCCTCTTCTGCTACTCCATCCC +
Preference number: 6 (lower is better)
Translates to: LAALPRGQCHLSTGV*VPDPQSLPLLLLHP
Trigger: GGGATGGAGTAGCAGAAGAGGAAGGGACTGTGGATCTGGGACCAAAACGCCTGTGGAAAGATGACACTGGCCGCGTGGAAGAGCTGCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS GCA 72 bp TGGCTGTACTCAGTGAGAACCTCACATCTGCTGCGCTaGCCACGTGTGACCTGGAGTGGATGCCATCCACAA +
Preference number: 6 (lower is better)
Translates to: WLYSVRTSHLLR*PRVTWSGCHPQ
Trigger: TTGTGGATGGCATCCACTCCAGGTCACACGTGGGCAGCGCAGCAGATGTGAGGTTCTCACTGAGTACAGCCA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS GCA 72 bp GCCTGGGTCCCCAACTTAGCAGGTACCATTGGTTCCTaGAGACTGAGCTCGGAGTCTGTGAGCAGAACATGG +
Preference number: 6 (lower is better)
Translates to: AWVPNLAGTIGS*RLSSESVSRTW
Trigger: CCATGTTCTGCTCACAGACTCCGAGCTCAGTCTGCAGGAACCAATGGTACCTGCTAAGTTGGGGACCCAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 72 bp CTTCTCTGCCTGGGTCCCCAACTTAGCAGGTACCATTaGTTCCTGCAGACTGAGCTCGGAGTCTGTGAGCAG +
Preference number: 6 (lower is better)
Translates to: LLCLGPQLSRYH*FLQTELGVCEQ
Trigger: CTGCTCACAGACTCCGAGCTCAGTCTGCAGGAACCAATGGTACCTGCTAAGTTGGGGACCCAGGCAGAGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS TCA 72 bp CCAATTTCCTGTCTGTGCCCAAGGCCAACAGGTTATTaGACTCTCTCTCCATCACTTGGCGGGCCTGGGTGC +
Preference number: 6 (lower is better)
Translates to: PISCLCPRPTGY*TLSPSLGGPGC
Trigger: GCACCCAGGCCCGCCAAGTGATGGAGAGAGAGTTCAATAACCTGTTGGCCTTGGGCACAGACAGGAAATTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 72 bp TTCCACGCGGCCAGTGTCATCTTTCCACAGGCGTTTTaGTCCCAGATCCACAGTCCCTTCCTCTTCTGCTAC +
Preference number: 6 (lower is better)
Translates to: FHAASVIFPQAF*SQIHSPFLFCY
Trigger: GTAGCAGAAGAGGAAGGGACTGTGGATCTGGGACCAAAACGCCTGTGGAAAGATGACACTGGCCGCGTGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS CAA 72 bp CTTCCACGCGGCCAGTGTCATCTTTCCACAGGCGTTTaGGTCCCAGATCCACAGTCCCTTCCTCTTCTGCTA +
Preference number: 6 (lower is better)
Translates to: LPRGQCHLSTGV*VPDPQSLPLLL
Trigger: TAGCAGAAGAGGAAGGGACTGTGGATCTGGGACCAAAACGCCTGTGGAAAGATGACACTGGCCGCGTGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS CAA 90 bp CTCACGGGCCTGGCTCAACTCATAGTTTTGCTTCTCCAAGAGTCCTaGCAGCTCTTCCACGCGGCCAGTGTCATCTTTCCACAGGCGTTT +
Preference number: 6 (lower is better)
Translates to: LTGLAQLIVLLLQES*QLFHAASVIFPQAF
Trigger: AAACGCCTGTGGAAAGATGACACTGGCCGCGTGGAAGAGCTGCAAGGACTCTTGGAGAAGCAAAACTATGAGTTGAGCCAGGCCCGTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000168515.8
ENSMUST00000189361.2
CDS GCA 72 bp CAGCTGGTGTTTCTTTTTCAGTCGCCGGTCCTTCTCTaGCTGGGTCCCCAACTTAGCAGGTACCATTGGTTC +
Preference number: 6 (lower is better)
Translates to: QLVFLFQSPVLL*LGPQLSRYHWF
Trigger: GAACCAATGGTACCTGCTAAGTTGGGGACCCAGGCAGAGAAGGACCGGCGACTGAAAAAGAAACACCAGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2
CDS CCA 72 bp TGGTGTTTCTTTTTCAGTCGCCGGTCCTTCTCTGCCTaGGTCCCCAACTTAGCAGGTACCATTGGTTCCTGC +
Preference number: 6 (lower is better)
Translates to: WCFFFSRRSFSA*VPNLAGTIGSC
Trigger: GCAGGAACCAATGGTACCTGCTAAGTTGGGGACCCAGGCAGAGAAGGACCGGCGACTGAAAAAGAAACACCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000168515.8
ENSMUST00000186730.7
ENSMUST00000189361.2