RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PPFIA2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000053825

Ensembl transcript IDs: ENSMUST00000029404.17, ENSMUST00000217854.2

Found 313 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCTGAGCAGCAGCAGCACCGGGCTCCATGTCTCCTGTCAAGGAAGTaGACAGTTTCCTCTGGTACAGGCTTCCGACCACGCCACTCGACC +
Preference number: 1 (lower is better)
Translates to: AEQQQHRAPCLLSRK*TVSSGTGFRPRHST
Trigger: GGTCGAGTGGCGTGGTCGGAAGCCTGTACCAGAGGAAACTGTTCACTTCCTTGACAGGAGACATGGAGCCCGGTGCTGCTGCTGCTCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR CCA 90 bp GCACCGGGCTCCATGTCTCCTGTCAAGGAAGTGAACAGTTTCCTCTaGTACAGGCTTCCGACCACGCCACTCGACCCCAAAGCCTGCAGA +
Preference number: 1 (lower is better)
Translates to: APGSMSPVKEVNSFL*YRLPTTPLDPKACR
Trigger: TCTGCAGGCTTTGGGGTCGAGTGGCGTGGTCGGAAGCCTGTACCAGAGGAAACTGTTCACTTCCTTGACAGGAGACATGGAGCCCGGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR GCA 90 bp GTGGCCAGGATAATGCTGATGCTAAGTGTTCAGGTCACAGAAATGTaGCCTCTTATGTGTCCCGAGCTGAGCAGCAGCAGCACCGGGCTC +
Preference number: 1 (lower is better)
Translates to: VARIMLMLSVQVTEM*PLMCPELSSSSTGL
Trigger: GAGCCCGGTGCTGCTGCTGCTCAGCTCGGGACACATAAGAGGGCACATTTCTGTGACCTGAACACTTAGCATCAGCATTATCCTGGCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR TCA 90 bp CCATCACAGTGCTTCTGTAAGGAGAGAGAGAGGGTGTCACATCCCTaGTGGCCTTTAAAGGTCATTTTGGGCTCCAGGTTTAATCACATG +
Preference number: 1 (lower is better)
Translates to: PSQCFCKERERVSHP*WPLKVILGSRFNHM
Trigger: CATGTGATTAAACCTGGAGCCCAAAATGACCTTTAAAGGCCATCAGGGATGTGACACCCTCTCTCTCTCCTTACAGAAGCACTGTGATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
3UTR CCA 90 bp TCTGTCTCTGTCTCTCTCTCTCTGACAAGGATGTGTTTCCTAAGTTaGCCTCAGAAATCCTGGTCCTCCTGCCTCTTACTCATAGTTGCT +
Preference number: 1 (lower is better)
Translates to: SVSVSLSLTRMCFLS*PQKSWSSCLLLIVA
Trigger: AGCAACTATGAGTAAGAGGCAGGAGGACCAGGATTTCTGAGGCCAACTTAGGAAACACATCCTTGTCAGAGAGAGAGAGACAGAGACAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR CCA 90 bp ACACAGGACCCCAGGGTGGAGCACCCCTTCTATGTTACTAGTTACTaGGTAAGGAGAGGCATGTATCTGGTAGAGAATTTCCAATGCATT +
Preference number: 1 (lower is better)
Translates to: TQDPRVEHPFYVTSY*VRRGMYLVENFQCI
Trigger: AATGCATTGGAAATTCTCTACCAGATACATGCCTCTCCTTACCCAGTAACTAGTAACATAGAAGGGGTGCTCCACCCTGGGGTCCTGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR CCA 90 bp CTCTCTCTGACAAGGATGTGTTTCCTAAGTTGGCCTCAGAAATCCTaGTCCTCCTGCCTCTTACTCATAGTTGCTGGGTTTACTTCCAAA +
Preference number: 1 (lower is better)
Translates to: LSLTRMCFLSWPQKS*SSCLLLIVAGFTSK
Trigger: TTTGGAAGTAAACCCAGCAACTATGAGTAAGAGGCAGGAGGACCAGGATTTCTGAGGCCAACTTAGGAAACACATCCTTGTCAGAGAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR TCA 90 bp ACAGTTTCTCACACCTGGGAAGGAGCTGTTTTTCTTATGTTTCAATaGGGAAAGCCATCTCTCCTGCAGATAGAGGCAGTTATCACGGCT +
Preference number: 1 (lower is better)
Translates to: TVSHTWEGAVFLMFQ*GKPSLLQIEAVITA
Trigger: AGCCGTGATAACTGCCTCTATCTGCAGGAGAGATGGCTTTCCTCATTGAAACATAAGAAAAACAGCTCCTTCCCAGGTGTGAGAAACTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR GCA 90 bp AAGTTGGCCTCAGAAATCCTGGTCCTCCTGCCTCTTACTCATAGTTaGTGGGTTTACTTCCAAATTAGCACTTTTTCCTCTCATAAGGGT +
Preference number: 1 (lower is better)
Translates to: KLASEILVLLPLTHS*WVYFQISTFSSHKG
Trigger: ACCCTTATGAGAGGAAAAAGTGCTAATTTGGAAGTAAACCCAGCAACTATGAGTAAGAGGCAGGAGGACCAGGATTTCTGAGGCCAACTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR CCA 90 bp AAAGACGAGACTGCTTTAGGTGACAGTGTGAGTGGTTTACCTAATTaGATATTGATTATTCCCCCAAAAGCTTCTGTGCTGAATGCGTGG +
Preference number: 1 (lower is better)
Translates to: KDETALGDSVSGLPN*ILIIPPKASVLNAW
Trigger: CCACGCATTCAGCACAGAAGCTTTTGGGGGAATAATCAATATCCAATTAGGTAAACCACTCACACTGTCACCTAAAGCAGTCTCGTCTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR TCA 90 bp TCTGGTAGAGAATTTCCAATGCATTCACCAAATATTTTGAAGAGATaGAGACTTCTGGAATCCCCTGTCATGATTGACTCTATGTGTCTG +
Preference number: 1 (lower is better)
Translates to: SGREFPMHSPNILKR*RLLESPVMIDSMCL
Trigger: CAGACACATAGAGTCAATCATGACAGGGGATTCCAGAAGTCTTCATCTCTTCAAAATATTTGGTGAATGCATTGGAAATTCTCTACCAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR GCA 90 bp AGAATCAAGGGATGTCCTCCAATTGGAAAGGCACGACGAGAAGGATaGTATAAGAAATTGAAACATTTTCACCATCTGCTAAATGTCAAT +
Preference number: 1 (lower is better)
Translates to: RIKGCPPIGKARREG*YKKLKHFHHLLNVN
Trigger: ATTGACATTTAGCAGATGGTGAAAATGTTTCAATTTCTTATAGCATCCTTCTCGTCGTGCCTTTCCAATTGGAGGACATCCCTTGATTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR TCA 90 bp TCAGATCCCAAAGAAATATGGCTCAGGAGAGAGGCTTTACCTTACTGCAAGAGCTTATGTGTCCCGAGCTaGGCAGCAGCAGCACCGGGC +
Preference number: 2 (lower is better)
Translates to: SDPKEIWLRREALPYCKSLCVPS*AAAAPG
Trigger: GCCCGGTGCTGCTGCTGCTCAGCTCGGGACACATAA...GCTCTTGCAGTAAGGTAAAGCCTCTCTCCTGAGCCATATTTCTTTGGGATCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR TCA 90 bp AGTAGGTTGCTTAGCAACACAGGACCCCAGGGTGGAGCACCCCTTCTATGTTACCAAAAGCTTCTGTGCTaGATGCGTGGCCAGGATAAT +
Preference number: 2 (lower is better)
Translates to: SRLLSNTGPQGGAPLLCYQKLLC*MRGQDN
Trigger: ATTATCCTGGCCACGCATTCAGCACAGAAGCTTTTG...GTAACATAGAAGGGGTGCTCCACCCTGGGGTCCTGTGTTGCTAAGCAACCTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR TCA 90 bp AGTAGGTTGCTTAGCAACACAGGACCCCAGGGTGGAGCACCCCTTCTATGTTACTGTAGACTGAAAAGATaGCATAGCAGGTCAGTGCTG +
Preference number: 2 (lower is better)
Translates to: SRLLSNTGPQGGAPLLCYCRLKR*HSRSVL
Trigger: CAGCACTGACCTGCTATGTCATCTTTTCAGTCTACA...GTAACATAGAAGGGGTGCTCCACCCTGGGGTCCTGTGTTGCTAAGCAACCTACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR CAA 90 bp CTCTGTCTCTGTCTCTCTCTCTCTGACAAGGATGTGTTTCCTAAGTaGGCCTCAGAAATCCTGGTCCTCCTGCCTCTTACTCATAGTTGC +
Preference number: 2 (lower is better)
Translates to: LCLCLSLSDKDVFPK*ASEILVLLPLTHSC
Trigger: GCAACTATGAGTAAGAGGCAGGAGGACCAGGATTTCTGAGGCCAACTTAGGAAACACATCCTTGTCAGAGAGAGAGAGACAGAGACAGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR CCA 90 bp TCAGATCCCAAAGAAATATGGCTCAGGAGAGAGGCTTTACCTTACTGCAAGAGCGTGAACAGTTTCCTCTaGTACAGGCTTCCGACCACG +
Preference number: 2 (lower is better)
Translates to: SDPKEIWLRREALPYCKSVNSFL*YRLPTT
Trigger: CGTGGTCGGAAGCCTGTACCAGAGGAAACTGTTCAC...GCTCTTGCAGTAAGGTAAAGCCTCTCTCCTGAGCCATATTTCTTTGGGATCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR CCA 90 bp TTACTGCAAGAGCCTCTTGTTTTCAAGAGAACCCCAAACATTTACTTGTATTGCAATGGGGGTAGGTTATaGGGTTCTGCCCCTCCACCC +
Preference number: 2 (lower is better)
Translates to: LLQEPLVFKRTPNIYLYCNGGRL*GSAPPP
Trigger: GGGTGGAGGGGCAGAACCCCATAACCTACCCCCATT...GCAATACAAGTAAATGTTTGGGGTTCTCTTGAAAACAAGAGGCTCTTGCAGTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR CAA 90 bp GAGACTGCTTTAGGTGACAGTGTGAGTGGTTTACCTAATTGGATATaGATTATTCCCCCAAAAGCTTCTGTGCTGAATGCGTGGCCAGGA +
Preference number: 2 (lower is better)
Translates to: ETALGDSVSGLPNWI*IIPPKASVLNAWPG
Trigger: TCCTGGCCACGCATTCAGCACAGAAGCTTTTGGGGGAATAATCAATATCCAATTAGGTAAACCACTCACACTGTCACCTAAAGCAGTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR CCA 90 bp CACCCCTTCTATGTTACTAGTTACTGGGTAAGGAGAGGCATGTATCTGGTAGAGACACCCCAGTGGAAATaGAACTCAGACTCTACAATG +
Preference number: 2 (lower is better)
Translates to: HPFYVTSYWVRRGMYLVETPQWK*NSDSTM
Trigger: CATTGTAGAGTCTGAGTTCCATTTCCACTGGGGTGT...CTCTACCAGATACATGCCTCTCCTTACCCAGTAACTAGTAACATAGAAGGGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR CCA 90 bp ACTGCTTTAGGTGACAGTGTGAGTGGTTTACCTAATTGGATATTGATTATTCCCCACCCCACACCCCAGTaGAAATGGAACTCAGACTCT +
Preference number: 2 (lower is better)
Translates to: TALGDSVSGLPNWILIIPHPTPQ*KWNSDS
Trigger: AGAGTCTGAGTTCCATTTCCACTGGGGTGTGGGGTG...GGGAATAATCAATATCCAATTAGGTAAACCACTCACACTGTCACCTAAAGCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR CCA 90 bp CACCCCTTCTATGTTACTAGTTACTGGGTAAGGAGAGGCATGTATCTGGTAGAGATTTTTAGGCAACTTTaGGCTGCAGAGTGGATAATG +
Preference number: 2 (lower is better)
Translates to: HPFYVTSYWVRRGMYLVEIFRQL*AAEWIM
Trigger: CATTATCCACTCTGCAGCCCAAAGTTGCCTAAAAAT...CTCTACCAGATACATGCCTCTCCTTACCCAGTAACTAGTAACATAGAAGGGGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR TCA 90 bp ACTGCTTTAGGTGACAGTGTGAGTGGTTTACCTAATTGGATATTGATTATTCCCCTCCTGTCAAGGAAGTaGACAGTTTCCTCTGGTACA +
Preference number: 2 (lower is better)
Translates to: TALGDSVSGLPNWILIIPLLSRK*TVSSGT
Trigger: TGTACCAGAGGAAACTGTTCACTTCCTTGACAGGAG...GGGAATAATCAATATCCAATTAGGTAAACCACTCACACTGTCACCTAAAGCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR CCA 90 bp CACCCCTTCTATGTTACTAGTTACTGGGTAAGGAGAGGCATGTATCTGGTAGAGAGAGTGGATAATGAATaGCTTCTCAAAGGGAAGTTT +
Preference number: 2 (lower is better)
Translates to: HPFYVTSYWVRRGMYLVERVDNE*LLKGKF
Trigger: AAACTTCCCTTTGAGAAGCCATTCATTATCCACTCT...CTCTACCAGATACATGCCTCTCCTTACCCAGTAACTAGTAACATAGAAGGGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR TCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTAAGCATGTCGAAGCATaGAACACACTTCTAAGGAAC +
Preference number: 2 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLKHVEA*NTLLRN
Trigger: GTTCCTTAGAAGTGTGTTTCATGCTTCGACATGCTT...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
3UTR-3UTR GCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTTGGAATTGTTCAGTTTaGACTCGAGACTCCATGAAC +
Preference number: 2 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLWNCSV*TRDSMN
Trigger: GTTCATGGAGTCTCGAGTGCAAACTGAACAATTCCA...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
3UTR-3UTR GCA 90 bp TCTAGTGTATTGAGGAACGTGTCTTTGGTGTACAGTTTTACAAATTCATGTGCTGTTGAGCCATCACAGTaGTTCTGTAAGGAGAGAGAG +
Preference number: 2 (lower is better)
Translates to: SSVLRNVSLVYSFTNSCAVEPSQ*FCKERE
Trigger: CTCTCTCTCCTTACAGAAGCACTGTGATGGCTCAAC...AGCACATGAATTTGTAAAACTGTACACCAAAGACACGTTCCTCAATACACTAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR CAA 90 bp GAAATATGGCTCAGGAGAGAGGCTTTACCTTACTGCAAGAGCCTCTaGTTTTCAAGAGAACCCCAAACATTTACTTGTATTGCAAGTTTT +
Preference number: 2 (lower is better)
Translates to: EIWLRREALPYCKSL*FSREPQTFTCIASF
Trigger: AAAACTTGCAATACAAGTAAATGTTTGGGGTTCTCTTGAAAACAAGAGGCTCTTGCAGTAAGGTAAAGCCTCTCTCCTGAGCCATATTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR TCA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATTGTAGACTGAAAAGATaGCATAGCAGGTCAGTGCTG +
Preference number: 2 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHCRLKR*HSRSVL
Trigger: CAGCACTGACCTGCTATGTCATCTTTTCAGTCTACA...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
3UTR-3UTR TCA 90 bp TTACTGCAAGAGCCTCTTGTTTTCAAGAGAACCCCAAACATTTACTTGTATTGCGGCTTTGTTTTCTTTTaGAACAGGTTGAGCCATCAC +
Preference number: 2 (lower is better)
Translates to: LLQEPLVFKRTPNIYLYCGFVFF*NRLSHH
Trigger: GTGATGGCTCAACCTGTTTCAAAAGAAAACAAAGCC...GCAATACAAGTAAATGTTTGGGGTTCTCTTGAAAACAAGAGGCTCTTGCAGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR CCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAAACACCCCAGTGGAAATaGAACTCAGACTCTACAATG +
Preference number: 2 (lower is better)
Translates to: LVITDLSLANALLTVIFKTPQWK*NSDSTM
Trigger: CATTGTAGAGTCTGAGTTCCATTTCCACTGGGGTGT...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
3UTR-3UTR TCA 90 bp GTATTTATTGAACCTCTGAGAGGTCTTGGAAGAGTTTCTCAATTCTTCAGCTTTAAGCATGTCGAAGCATaGAACACACTTCTAAGGAAC +
Preference number: 2 (lower is better)
Translates to: VFIEPLRGLGRVSQFFSFKHVEA*NTLLRN
Trigger: GTTCCTTAGAAGTGTGTTTCATGCTTCGACATGCTT...AAAGCTGAAGAATTGAGAAACTCTTCCAAGACCTCTCAGAGGTTCAATAAATAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR TCA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACAAGACTCTACAATGGTTaGCATTCACTGTCCAGTGTT +
Preference number: 2 (lower is better)
Translates to: NNNLLMTGLALRPSSRETRLYNG*HSLSSV
Trigger: AACACTGGACAGTGAATGTCAACCATTGTAGAGTCT...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
3UTR-3UTR TCA 90 bp TTACTGCAAGAGCCTCTTGTTTTCAAGAGAACCCCAAACATTTACTTGTATTGCTTTCTTATGTTTCAATaGGGAAAGCCATCTCTCCTG +
Preference number: 2 (lower is better)
Translates to: LLQEPLVFKRTPNIYLYCFLMFQ*GKPSLL
Trigger: CAGGAGAGATGGCTTTCCTCATTGAAACATAAGAAA...GCAATACAAGTAAATGTTTGGGGTTCTCTTGAAAACAAGAGGCTCTTGCAGTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR GCA 90 bp TCTAGTGTATTGAGGAACGTGTCTTTGGTGTACAGTTTTACAAATTCATGTGCTTGGAATTGTTCAGTTTaGACTCGAGACTCCATGAAC +
Preference number: 2 (lower is better)
Translates to: SSVLRNVSLVYSFTNSCAWNCSV*TRDSMN
Trigger: GTTCATGGAGTCTCGAGTGCAAACTGAACAATTCCA...AGCACATGAATTTGTAAAACTGTACACCAAAGACACGTTCCTCAATACACTAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR TCA 90 bp GTATTTATTGAACCTCTGAGAGGTCTTGGAAGAGTTTCTCAATTCTTCAGCTTTTACAAGAAATATAGGTaGGAACTAACAGATGGCAAC +
Preference number: 2 (lower is better)
Translates to: VFIEPLRGLGRVSQFFSFYKKYR*ELTDGN
Trigger: GTTGCCATCTGTTAGTTCTCACCTATATTTCTTGTA...AAAGCTGAAGAATTGAGAAACTCTTCCAAGACCTCTCAGAGGTTCAATAAATAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR GCA 90 bp TCTAGTGTATTGAGGAACGTGTCTTTGGTGTACAGTTTTACAAATTCATGTGCTATGAAGTCATCAGACTaGTTAAAACATTGGGAGAAA +
Preference number: 2 (lower is better)
Translates to: SSVLRNVSLVYSFTNSCAMKSSD*LKHWEK
Trigger: TTTCTCCCAATGTTTTAAGCAGTCTGATGACTTCAT...AGCACATGAATTTGTAAAACTGTACACCAAAGACACGTTCCTCAATACACTAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR CCA 90 bp TCTAGTGTATTGAGGAACGTGTCTTTGGTGTACAGTTTTACAAATTCATGTGCTAGTGGTTTACCTAATTaGATATTGATTATTCCCCCA +
Preference number: 2 (lower is better)
Translates to: SSVLRNVSLVYSFTNSCASGLPN*ILIIPP
Trigger: TGGGGGAATAATCAATATCCAATTAGGTAAACCACT...AGCACATGAATTTGTAAAACTGTACACCAAAGACACGTTCCTCAATACACTAGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR GCA 72 bp TTCCGACCACGCCACTCGACCCCAAAGCCTGCAGACTaGCGGTTCTTGAGACGGAACATCAAATGCGCTGGG +
Preference number: 3 (lower is better)
Translates to: FRPRHSTPKPAD*RFLRRNIKCAG
Trigger: CCCAGCGCATTTGATGTTCCGTCTCAAGAACCGGCAGTCTGCAGGCTTTGGGGTCGAGTGGCGTGGTCGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR TCA 72 bp CAGCAGCACCGGGCTCCATGTCTCCTGTCAAGGAAGTaGACAGTTTCCTCTGGTACAGGCTTCCGACCACGC +
Preference number: 3 (lower is better)
Translates to: QQHRAPCLLSRK*TVSSGTGFRPR
Trigger: GCGTGGTCGGAAGCCTGTACCAGAGGAAACTGTTCACTTCCTTGACAGGAGACATGGAGCCCGGTGCTGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR TCA 72 bp AGGTCACAGAAATGTGCCCTCTTATGTGTCCCGAGCTaGGCAGCAGCAGCACCGGGCTCCATGTCTCCTGTC +
Preference number: 3 (lower is better)
Translates to: RSQKCALLCVPS*AAAAPGSMSPV
Trigger: GACAGGAGACATGGAGCCCGGTGCTGCTGCTGCTCAGCTCGGGACACATAAGAGGGCACATTTCTGTGACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR CCA 72 bp TCCATGTCTCCTGTCAAGGAAGTGAACAGTTTCCTCTaGTACAGGCTTCCGACCACGCCACTCGACCCCAAA +
Preference number: 3 (lower is better)
Translates to: SMSPVKEVNSFL*YRLPTTPLDPK
Trigger: TTTGGGGTCGAGTGGCGTGGTCGGAAGCCTGTACCAGAGGAAACTGTTCACTTCCTTGACAGGAGACATGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR TCA 72 bp GCCACTCGACCCCAAAGCCTGCAGACTGCCGGTTCTTaGGACGGAACATCAAATGCGCTGGGACAAAATAAA +
Preference number: 3 (lower is better)
Translates to: ATRPQSLQTAGS*DGTSNALGQNK
Trigger: TTTATTTTGTCCCAGCGCATTTGATGTTCCGTCTCAAGAACCGGCAGTCTGCAGGCTTTGGGGTCGAGTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR GCA 72 bp ATAATGCTGATGCTAAGTGTTCAGGTCACAGAAATGTaGCCTCTTATGTGTCCCGAGCTGAGCAGCAGCAGC +
Preference number: 3 (lower is better)
Translates to: IMLMLSVQVTEM*PLMCPELSSSS
Trigger: GCTGCTGCTGCTCAGCTCGGGACACATAAGAGGGCACATTTCTGTGACCTGAACACTTAGCATCAGCATTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR CCA 72 bp CAGCAAGGGCCATCCCTATCAGATCCCAAAGAAATATaGCTCAGGAGAGAGGCTTTACCTTACTGCAAGAGC +
Preference number: 3 (lower is better)
Translates to: QQGPSLSDPKEI*LRREALPYCKS
Trigger: GCTCTTGCAGTAAGGTAAAGCCTCTCTCCTGAGCCATATTTCTTTGGGATCTGATAGGGATGGCCCTTGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR CAA 90 bp AGTAGGTTGCTTAGCAACACAGGACCCCAGGGTGGAGCACCCCTTCTATGTTACGGAAACTGGAGGCATTaGTTGTTGTTGTTGTTGTTT +
Preference number: 3 (lower is better)
Translates to: SRLLSNTGPQGGAPLLCYGNWRH*LLLLLF
Trigger: AAACAACAACAACAACAACAAATGCCTCCAGTTTCC...GTAACATAGAAGGGGTGCTCCACCCTGGGGTCCTGTGTTGCTAAGCAACCTACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR CCA 72 bp ACAAGGATGTGTTTCCTAAGTTGGCCTCAGAAATCCTaGTCCTCCTGCCTCTTACTCATAGTTGCTGGGTTT +
Preference number: 3 (lower is better)
Translates to: TRMCFLSWPQKS*SSCLLLIVAGF
Trigger: AAACCCAGCAACTATGAGTAAGAGGCAGGAGGACCAGGATTTCTGAGGCCAACTTAGGAAACACATCCTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR TCA 72 bp CACACCTGGGAAGGAGCTGTTTTTCTTATGTTTCAATaGGGAAAGCCATCTCTCCTGCAGATAGAGGCAGTT +
Preference number: 3 (lower is better)
Translates to: HTWEGAVFLMFQ*GKPSLLQIEAV
Trigger: AACTGCCTCTATCTGCAGGAGAGATGGCTTTCCTCATTGAAACATAAGAAAAACAGCTCCTTCCCAGGTGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR GCA 72 bp TGTTTCCTAAGTTGGCCTCAGAAATCCTGGTCCTCCTaGCTCTTACTCATAGTTGCTGGGTTTACTTCCAAA +
Preference number: 3 (lower is better)
Translates to: CFLSWPQKSWSS*LLLIVAGFTSK
Trigger: TTTGGAAGTAAACCCAGCAACTATGAGTAAGAGGCAGGAGGACCAGGATTTCTGAGGCCAACTTAGGAAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR GCA 72 bp AAAGAAATATGGCTCAGGAGAGAGGCTTTACCTTACTaGAAGAGCCTCTTGTTTTCAAGAGAACCCCAAACA +
Preference number: 3 (lower is better)
Translates to: KEIWLRREALPY*KSLLFSREPQT
Trigger: TGTTTGGGGTTCTCTTGAAAACAAGAGGCTCTTGCAGTAAGGTAAAGCCTCTCTCCTGAGCCATATTTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR CAA 90 bp CCTCTATCAGCTGGTTTAGACCTCCCTCTAGTGGCAGACTCAATTTTGAATAGAAAACAGTACTTGGAATaGTTCAGTTTGCACTCGAGA +
Preference number: 3 (lower is better)
Translates to: PLSAGLDLPLVADSILNRKQYLE*FSLHSR
Trigger: TCTCGAGTGCAAACTGAACAATTCCAAGTACTGTTT...TCTATTCAAAATTGAGTCTGCCACTAGAGGGAGGTCTAAACCAGCTGATAGAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR CAA 90 bp ACTGCTTTAGGTGACAGTGTGAGTGGTTTACCTAATTGGATATTGATTATTCCCCTCGTAATAACAGACTaGAGTCTGGCTAATGCCCTG +
Preference number: 3 (lower is better)
Translates to: TALGDSVSGLPNWILIIPLVITD*SLANAL
Trigger: CAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG...GGGAATAATCAATATCCAATTAGGTAAACCACTCACACTGTCACCTAAAGCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR CAA 90 bp CACCCCTTCTATGTTACTAGTTACTGGGTAAGGAGAGGCATGTATCTGGTAGAGGTGGCAGACTCAATTTaGAATAGAATCGCATTTGAA +
Preference number: 3 (lower is better)
Translates to: HPFYVTSYWVRRGMYLVEVADSI*NRIAFE
Trigger: TTCAAATGCGATTCTATTCAAAATTGAGTCTGCCAC...CTCTACCAGATACATGCCTCTCCTTACCCAGTAACTAGTAACATAGAAGGGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR CAA 90 bp CACCCCTTCTATGTTACTAGTTACTGGGTAAGGAGAGGCATGTATCTGGTAGAGTTGTCATTTTCGTATTaGCCCATTATAAACTCAGGC +
Preference number: 3 (lower is better)
Translates to: HPFYVTSYWVRRGMYLVELSFSY*PIINSG
Trigger: GCCTGAGTTTATAATGGGCAAATACGAAAATGACAA...CTCTACCAGATACATGCCTCTCCTTACCCAGTAACTAGTAACATAGAAGGGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR CAA 90 bp CACCCCTTCTATGTTACTAGTTACTGGGTAAGGAGAGGCATGTATCTGGTAGAGCTGACATTTTGTAACTaGAAGCTCTTGAGTTTCTTG +
Preference number: 3 (lower is better)
Translates to: HPFYVTSYWVRRGMYLVELTFCN*KLLSFL
Trigger: CAAGAAACTCAAGAGCTTCAAGTTACAAAATGTCAG...CTCTACCAGATACATGCCTCTCCTTACCCAGTAACTAGTAACATAGAAGGGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR GCA 72 bp GGATGTCCTCCAATTGGAAAGGCACGACGAGAAGGATaGTATAAGAAATTGAAACATTTTCACCATCTGCTA +
Preference number: 3 (lower is better)
Translates to: GCPPIGKARREG*YKKLKHFHHLL
Trigger: TAGCAGATGGTGAAAATGTTTCAATTTCTTATAGCATCCTTCTCGTCGTGCCTTTCCAATTGGAGGACATCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR CCA 72 bp ACTGCTTTAGGTGACAGTGTGAGTGGTTTACCTAATTaGATATTGATTATTCCCCCAAAAGCTTCTGTGCTG +
Preference number: 3 (lower is better)
Translates to: TALGDSVSGLPN*ILIIPPKASVL
Trigger: CAGCACAGAAGCTTTTGGGGGAATAATCAATATCCAATTAGGTAAACCACTCACACTGTCACCTAAAGCAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR CAA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACACTCGTAATAACAGACTaGAGTCTGGCTAATGCCCTG +
Preference number: 3 (lower is better)
Translates to: NNNLLMTGLALRPSSRETLVITD*SLANAL
Trigger: CAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
3UTR-3UTR CAA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTAAACAGTACTTGGAATaGTTCAGTTTGCACTCGAGA +
Preference number: 3 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLKQYLE*FSLHSR
Trigger: TCTCGAGTGCAAACTGAACAATTCCAAGTACTGTTT...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
3UTR-3UTR CAA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAAGTGTGTGTGTGTTTCTaGGTCCACAGGCAACAAAAT +
Preference number: 3 (lower is better)
Translates to: LVITDLSLANALLTVIFKVCVCF*VHRQQN
Trigger: ATTTTGTTGCCTGTGGACCAAGAAACACACACACAC...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
3UTR-3UTR CAA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAACAGACTCTACAATGGTaGACATTCACTGTCCAGTGT +
Preference number: 3 (lower is better)
Translates to: LVITDLSLANALLTVIFKQTLQW*TFTVQC
Trigger: ACACTGGACAGTGAATGTCAACCATTGTAGAGTCTG...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
3UTR-3UTR CAA 90 bp GTATTTATTGAACCTCTGAGAGGTCTTGGAAGAGTTTCTCAATTCTTCAGCTTTCAGACTCTACAATGGTaGACATTCACTGTCCAGTGT +
Preference number: 3 (lower is better)
Translates to: VFIEPLRGLGRVSQFFSFQTLQW*TFTVQC
Trigger: ACACTGGACAGTGAATGTCAACCATTGTAGAGTCTG...AAAGCTGAAGAATTGAGAAACTCTTCCAAGACCTCTCAGAGGTTCAATAAATAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR CAA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAATTGGAATTGTTCAGTTaGCACTCGAGACTCCATGAA +
Preference number: 3 (lower is better)
Translates to: LVITDLSLANALLTVIFKLELFS*HSRLHE
Trigger: TTCATGGAGTCTCGAGTGCAAACTGAACAATTCCAA...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
3UTR-3UTR CAA 90 bp GTATTTATTGAACCTCTGAGAGGTCTTGGAAGAGTTTCTCAATTCTTCAGCTTTTGGCTTTGTTTTCTTTaGAAACAGGTTGAGCCATCA +
Preference number: 3 (lower is better)
Translates to: VFIEPLRGLGRVSQFFSFWLCFL*KQVEPS
Trigger: TGATGGCTCAACCTGTTTCAAAAGAAAACAAAGCCA...AAAGCTGAAGAATTGAGAAACTCTTCCAAGACCTCTCAGAGGTTCAATAAATAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR TCA 72 bp GAATTTCCAATGCATTCACCAAATATTTTGAAGAGATaGAGACTTCTGGAATCCCCTGTCATGATTGACTCT +
Preference number: 3 (lower is better)
Translates to: EFPMHSPNILKR*RLLESPVMIDS
Trigger: AGAGTCAATCATGACAGGGGATTCCAGAAGTCTTCATCTCTTCAAAATATTTGGTGAATGCATTGGAAATTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR-3UTR CAA 90 bp GTATTTATTGAACCTCTGAGAGGTCTTGGAAGAGTTTCTCAATTCTTCAGCTTTCATGAGGTTTCTGTTTaGTCTTGTTTGTCAAATCAC +
Preference number: 3 (lower is better)
Translates to: VFIEPLRGLGRVSQFFSFHEVSV*SCLSNH
Trigger: GTGATTTGACAAACAAGACAAAACAGAAACCTCATG...AAAGCTGAAGAATTGAGAAACTCTTCCAAGACCTCTCAGAGGTTCAATAAATAC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR GCA 72 bp GTCACACAGGTATCTAAATACGAGTATAAATCTTTCTaGCATGCAGGTATCAGAGTTTCTCTTATCTATTTC +
Preference number: 3 (lower is better)
Translates to: VTQVSKYEYKSF*HAGIRVSLIYF
Trigger: GAAATAGATAAGAGAAACTCTGATACCTGCATGGCAGAAAGATTTATACTCGTATTTAGATACCTGTGTGAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AGTAGGTTGCTTAGCAACACAGGACCCCAGGGTGGAGCACCCCTTCTATGTTACACATCCTGGAGCCTTTaGTGGGCAAGTGAGAGGCTC +
Preference number: 4 (lower is better)
Translates to: SRLLSNTGPQGGAPLLCYTSWSL*WASERL
Trigger: GAGCCTCTCACTTGCCCAGCAAAGGCTCCAGGATGT...GTAACATAGAAGGGGTGCTCCACCCTGGGGTCCTGTGTTGCTAAGCAACCTACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AGTAGGTTGCTTAGCAACACAGGACCCCAGGGTGGAGCACCCCTTCTATGTTACGCTATAAGTGAGCCATaGACGCCACTCTCAAGAATG +
Preference number: 4 (lower is better)
Translates to: SRLLSNTGPQGGAPLLCYAISEP*TPLSRM
Trigger: CATTCTTGAGAGTGGCGTGCATGGCTCACTTATAGC...GTAACATAGAAGGGGTGCTCCACCCTGGGGTCCTGTGTTGCTAAGCAACCTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AGTAGGTTGCTTAGCAACACAGGACCCCAGGGTGGAGCACCCCTTCTATGTTACTTCAAGAATCTGCCTTaGCTGGGTGTTCTGTGTTGG +
Preference number: 4 (lower is better)
Translates to: SRLLSNTGPQGGAPLLCYFKNLP*LGVLCW
Trigger: CCAACACAGAACACCCAGGCAAGGCAGATTCTTGAA...GTAACATAGAAGGGGTGCTCCACCCTGGGGTCCTGTGTTGCTAAGCAACCTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp TCAGATCCCAAAGAAATATGGCTCAGGAGAGAGGCTTTACCTTACTGCAAGAGCTGCCACGTACCAAGCTaGCATTCCCAGCCAGAGCTC +
Preference number: 4 (lower is better)
Translates to: SDPKEIWLRREALPYCKSCHVPS*HSQPEL
Trigger: GAGCTCTGGCTGGGAATGCCAGCTTGGTACGTGGCA...GCTCTTGCAGTAAGGTAAAGCCTCTCTCCTGAGCCATATTTCTTTGGGATCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp AGTAGGTTGCTTAGCAACACAGGACCCCAGGGTGGAGCACCCCTTCTATGTTACACGTTGTGGTCAACCTaGATCCAGCTGGTAATGTTT +
Preference number: 4 (lower is better)
Translates to: SRLLSNTGPQGGAPLLCYTLWST*IQLVMF
Trigger: AAACATTACCAGCTGGATTCAGGTTGACCACAACGT...GTAACATAGAAGGGGTGCTCCACCCTGGGGTCCTGTGTTGCTAAGCAACCTACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp ACACCTGGGAAGGAGCTGTTTTTCTTATGTTTCAATGAGGAAAGCCATCTCTCCACTGGGCTTGCCGCTTaGCCACCGTCATTCTTAGTG +
Preference number: 4 (lower is better)
Translates to: TPGKELFFLCFNEESHLSTGLAA*PPSFLV
Trigger: CACTAAGAATGACGGTGGTCAAGCGGCAAGCCCAGT...GGAGAGATGGCTTTCCTCATTGAAACATAAGAAAAACAGCTCCTTCCCAGGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AGTAGGTTGCTTAGCAACACAGGACCCCAGGGTGGAGCACCCCTTCTATGTTACTTCCCGAAGTCCAATTaGTTGTATCCAGCGAATAAC +
Preference number: 4 (lower is better)
Translates to: SRLLSNTGPQGGAPLLCYFPKSN*LYPANN
Trigger: GTTATTCGCTGGATACAAGCAATTGGACTTCGGGAA...GTAACATAGAAGGGGTGCTCCACCCTGGGGTCCTGTGTTGCTAAGCAACCTACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp CACCCCTTCTATGTTACTAGTTACTGGGTAAGGAGAGGCATGTATCTGGTAGAGCTTCCTTCTGAGCCATaGCCTCTCGGATGTCCCTTT +
Preference number: 4 (lower is better)
Translates to: HPFYVTSYWVRRGMYLVELPSEP*PLGCPF
Trigger: AAAGGGACATCCGAGAGGCCATGGCTCAGAAGGAAG...CTCTACCAGATACATGCCTCTCCTTACCCAGTAACTAGTAACATAGAAGGGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTGAGGGAGACTGGGCTTaGCGCTTGACCACCGTCATT +
Preference number: 4 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLEGDWA*RLTTVI
Trigger: AATGACGGTGGTCAAGCGGCAAGCCCAGTCTCCCTC...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTCACGTTGGCTCTGCATaGTGCCACGTACCAAGCTGG +
Preference number: 4 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLHVGSA*CHVPSW
Trigger: CCAGCTTGGTACGTGGCAGCATGCAGAGCCAACGTG...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp TCAGATCCCAAAGAAATATGGCTCAGGAGAGAGGCTTTACCTTACTGCAAGAGCGTCATTTTCCTGGACTaGCCAGACGTTGTGGTCAAC +
Preference number: 4 (lower is better)
Translates to: SDPKEIWLRREALPYCKSVIFLD*PDVVVN
Trigger: GTTGACCACAACGTCTGGGCAGTCCAGGAAAATGAC...GCTCTTGCAGTAAGGTAAAGCCTCTCTCCTGAGCCATATTTCTTTGGGATCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTAGTGAGAGGCTCTCCTaGGTCTCTCGGAGTGTGTCC +
Preference number: 4 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLSERLS*VSRSVS
Trigger: GGACACACTCCGAGAGACCCAGGAGAGCCTCTCACT...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTTCCTGGAGCCTTTGCTaGGCAAGTGAGAGGCTCTCC +
Preference number: 4 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLSWSLC*ASERLS
Trigger: GGAGAGCCTCTCACTTGCCCAGCAAAGGCTCCAGGA...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp CCTGGGAAGGAGCTGTTTTTCTTATGTTTCAATGAGGAAAGCCATCTCTCCTGCGTTGCAGGCGCTCATTaGATTCTGTCAGAAGCCTGT +
Preference number: 4 (lower is better)
Translates to: PGKELFFLCFNEESHLSCVAGAH*ILSEAC
Trigger: ACAGGCTTCTGACAGAATCCAATGAGCGCCTGCAAC...GCAGGAGAGATGGCTTTCCTCATTGAAACATAAGAAAAACAGCTCCTTCCCAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTTGCCACGTACCAAGCTaGCATTCCCAGCCAGAGCTC +
Preference number: 4 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLCHVPS*HSQPEL
Trigger: GAGCTCTGGCTGGGAATGCCAGCTTGGTACGTGGCA...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp ACACCTGGGAAGGAGCTGTTTTTCTTATGTTTCAATGAGGAAAGCCATCTCTCCCACCACTTTTCACGTTaGCTCTGCATGCTGCCACGT +
Preference number: 4 (lower is better)
Translates to: TPGKELFFLCFNEESHLSHHFSR*LCMLPR
Trigger: ACGTGGCAGCATGCAGAGCCAACGTGAAAAGTGGTG...GGAGAGATGGCTTTCCTCATTGAAACATAAGAAAAACAGCTCCTTCCCAGGTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp ACACCTGGGAAGGAGCTGTTTTTCTTATGTTTCAATGAGGAAAGCCATCTCTCCCTGTCGTCATTTTCCTaGACTGCCCAGACGTTGTGG +
Preference number: 4 (lower is better)
Translates to: TPGKELFFLCFNEESHLSLSSFS*TAQTLW
Trigger: CCACAACGTCTGGGCAGTCCAGGAAAATGACGACAG...GGAGAGATGGCTTTCCTCATTGAAACATAAGAAAAACAGCTCCTTCCCAGGTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp CCTGGGAAGGAGCTGTTTTTCTTATGTTTCAATGAGGAAAGCCATCTCTCCTGCCAGCTGTCTCTGGAGTaGATCTCTGTCATAGATGAC +
Preference number: 4 (lower is better)
Translates to: PGKELFFLCFNEESHLSCQLSLE*ISVIDD
Trigger: GTCATCTATGACAGAGATTCACTCCAGAGACAGCTG...GCAGGAGAGATGGCTTTCCTCATTGAAACATAAGAAAAACAGCTCCTTCCCAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTTCCTTCAAGATGCTCTaGCTCCGTGGACCCCTCACT +
Preference number: 4 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLSFKML*LRGPLT
Trigger: AGTGAGGGGTCCACGGAGTCAGAGCATCTTGAAGGA...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTACATCCTGGAGCCTTTaGTGGGCAAGTGAGAGGCTC +
Preference number: 4 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLTSWSL*WASERL
Trigger: GAGCCTCTCACTTGCCCAGCAAAGGCTCCAGGATGT...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTGGCTGCTATTGGCACTaGCAAGCCCAAGACTGTCTG +
Preference number: 4 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLGCYWH*QAQDCL
Trigger: CAGACAGTCTTGGGCTTGGCAGTGCCAATAGCAGCC...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp ACACCTGGGAAGGAGCTGTTTTTCTTATGTTTCAATGAGGAAAGCCATCTCTCCTTTTCACGTTGGCTCTaGATGCTGCCACGTACCAAG +
Preference number: 4 (lower is better)
Translates to: TPGKELFFLCFNEESHLSFSRWL*MLPRTK
Trigger: CTTGGTACGTGGCAGCATGCAGAGCCAACGTGAAAA...GGAGAGATGGCTTTCCTCATTGAAACATAAGAAAAACAGCTCCTTCCCAGGTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTTCGGAGCCACTGCTTTaGGAACCCCGTTGGCTCATT +
Preference number: 4 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLSEPLL*EPRWLI
Trigger: AATGAGCCAACGGGGTTCCCAAAGCAGTGGCTCCGA...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATGACGGCTCTGGGTGTTaGGGGAGGAGAAGTCTCGCA +
Preference number: 4 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHDGSGC*GRRSLA
Trigger: TGCGAGACTTCTCCTCCCCCAACACCCAGAGCCGTC...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp TCTAGTGTATTGAGGAACGTGTCTTTGGTGTACAGTTTTACAAATTCATGTGCTGACGGCTCTGGGTGTTaGGGGAGGAGAAGTCTCGCA +
Preference number: 4 (lower is better)
Translates to: SSVLRNVSLVYSFTNSCADGSGC*GRRSLA
Trigger: TGCGAGACTTCTCCTCCCCCAACACCCAGAGCCGTC...AGCACATGAATTTGTAAAACTGTACACCAAAGACACGTTCCTCAATACACTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTAGGGATTCGATGTCCTaGGGTAGGGCTGAATTCAGC +
Preference number: 4 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLRDSMS*GRAEFS
Trigger: GCTGAATTCAGCCCTACCTCAGGACATCGAATCCCT...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp GTATTTATTGAACCTCTGAGAGGTCTTGGAAGAGTTTCTCAATTCTTCAGCTTTGAGGGAGACTGGGCTTaGCGCTTGACCACCGTCATT +
Preference number: 4 (lower is better)
Translates to: VFIEPLRGLGRVSQFFSFEGDWA*RLTTVI
Trigger: AATGACGGTGGTCAAGCGGCAAGCCCAGTCTCCCTC...AAAGCTGAAGAATTGAGAAACTCTTCCAAGACCTCTCAGAGGTTCAATAAATAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp ACTGCTTTAGGTGACAGTGTGAGTGGTTTACCTAATTGGATATTGATTATTCCCGGCTGCTATTGGCACTaGCAAGCCCAAGACTGTCTG +
Preference number: 4 (lower is better)
Translates to: TALGDSVSGLPNWILIIPGCYWH*QAQDCL
Trigger: CAGACAGTCTTGGGCTTGGCAGTGCCAATAGCAGCC...GGGAATAATCAATATCCAATTAGGTAAACCACTCACACTGTCACCTAAAGCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp GTATTTATTGAACCTCTGAGAGGTCTTGGAAGAGTTTCTCAATTCTTCAGCTTTCACGTTGGCTCTGCATaGTGCCACGTACCAAGCTGG +
Preference number: 4 (lower is better)
Translates to: VFIEPLRGLGRVSQFFSFHVGSA*CHVPSW
Trigger: CCAGCTTGGTACGTGGCAGCATGCAGAGCCAACGTG...AAAGCTGAAGAATTGAGAAACTCTTCCAAGACCTCTCAGAGGTTCAATAAATAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAATCACGAGGAGGGAACTaGCTTCGCCAGGTTGATCCC +
Preference number: 4 (lower is better)
Translates to: LVITDLSLANALLTVIFKSRGGN*LRQVDP
Trigger: GGGATCAACCTGGCGAAGGCAGTTCCCTCCTCGTGA...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp GTATTTATTGAACCTCTGAGAGGTCTTGGAAGAGTTTCTCAATTCTTCAGCTTTTCACGAGGAGGGAACTaGCTTCGCCAGGTTGATCCC +
Preference number: 4 (lower is better)
Translates to: VFIEPLRGLGRVSQFFSFSRGGN*LRQVDP
Trigger: GGGATCAACCTGGCGAAGGCAGTTCCCTCCTCGTGA...AAAGCTGAAGAATTGAGAAACTCTTCCAAGACCTCTCAGAGGTTCAATAAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp CCTGGGAAGGAGCTGTTTTTCTTATGTTTCAATGAGGAAAGCCATCTCTCCTGCGAGTTGTCTAACCTCTaGAGTCTTGATGAAGCAACG +
Preference number: 4 (lower is better)
Translates to: PGKELFFLCFNEESHLSCELSNL*SLDEAT
Trigger: CGTTGCTTCATCAAGACTGCAGAGGTTAGACAACTC...GCAGGAGAGATGGCTTTCCTCATTGAAACATAAGAAAAACAGCTCCTTCCCAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACACTTTGGGAACCCCGTTaGCTCATTGGGGTGTCCTCG +
Preference number: 4 (lower is better)
Translates to: NNNLLMTGLALRPSSRETLWEPR*LIGVSS
Trigger: CGAGGACACCCCAATGAGCCAACGGGGTTCCCAAAG...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp TCTAGTGTATTGAGGAACGTGTCTTTGGTGTACAGTTTTACAAATTCATGTGCTAGTGAGAGGCTCTCCTaGGTCTCTCGGAGTGTGTCC +
Preference number: 4 (lower is better)
Translates to: SSVLRNVSLVYSFTNSCASERLS*VSRSVS
Trigger: GGACACACTCCGAGAGACCCAGGAGAGCCTCTCACT...AGCACATGAATTTGTAAAACTGTACACCAAAGACACGTTCCTCAATACACTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp ACTGCTTTAGGTGACAGTGTGAGTGGTTTACCTAATTGGATATTGATTATTCCCTGCAGCAAACTCCGGTaGATCAGCCCCCTTAGAACC +
Preference number: 4 (lower is better)
Translates to: TALGDSVSGLPNWILIIPCSKLR*ISPLRT
Trigger: GGTTCTAAGGGGGCTGATCCACCGGAGTTTGCTGCA...GGGAATAATCAATATCCAATTAGGTAAACCACTCACACTGTCACCTAAAGCAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTCACCACTTTTCACGTTaGCTCTGCATGCTGCCACGT +
Preference number: 4 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLHHFSR*LCMLPR
Trigger: ACGTGGCAGCATGCAGAGCCAACGTGAAAAGTGGTG...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp CACCCCTTCTATGTTACTAGTTACTGGGTAAGGAGAGGCATGTATCTGGTAGAGAGTATGTGCGAACAGTaGAGTTGTCTAACCTCTGCA +
Preference number: 4 (lower is better)
Translates to: HPFYVTSYWVRRGMYLVESMCEQ*SCLTSA
Trigger: TGCAGAGGTTAGACAACTCCACTGTTCGCACATACT...CTCTACCAGATACATGCCTCTCCTTACCCAGTAACTAGTAACATAGAAGGGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATACTGGGCTTGCCGCTTaGCCACCGTCATTCTTAGTG +
Preference number: 4 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHTGLAA*PPSFLV
Trigger: CACTAAGAATGACGGTGGTCAAGCGGCAAGCCCAGT...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp GTATTTATTGAACCTCTGAGAGGTCTTGGAAGAGTTTCTCAATTCTTCAGCTTTTCCTTCAAGATGCTCTaGCTCCGTGGACCCCTCACT +
Preference number: 4 (lower is better)
Translates to: VFIEPLRGLGRVSQFFSFSFKML*LRGPLT
Trigger: AGTGAGGGGTCCACGGAGTCAGAGCATCTTGAAGGA...AAAGCTGAAGAATTGAGAAACTCTTCCAAGACCTCTCAGAGGTTCAATAAATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp ACACCTGGGAAGGAGCTGTTTTTCTTATGTTTCAATGAGGAAAGCCATCTCTCCCTGTCCTTTTCAGCTTaGGTTCCAAGTTTGCCTAAG +
Preference number: 4 (lower is better)
Translates to: TPGKELFFLCFNEESHLSLSFSA*VPSLPK
Trigger: CTTAGGCAAACTTGGAACTCAAGCTGAAAAGGACAG...GGAGAGATGGCTTTCCTCATTGAAACATAAGAAAAACAGCTCCTTCCCAGGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATGCGCTGAAGGGCTGGTaGGAGAAACCATCTCTTGGA +
Preference number: 4 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHALKGW*EKPSLG
Trigger: TCCAAGAGATGGTTTCTCTCACCAGCCCTTCAGCGC...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp TCTAGTGTATTGAGGAACGTGTCTTTGGTGTACAGTTTTACAAATTCATGTGCTGCGCTGAAGGGCTGGTaGGAGAAACCATCTCTTGGA +
Preference number: 4 (lower is better)
Translates to: SSVLRNVSLVYSFTNSCAALKGW*EKPSLG
Trigger: TCCAAGAGATGGTTTCTCTCACCAGCCCTTCAGCGC...AGCACATGAATTTGTAAAACTGTACACCAAAGACACGTTCCTCAATACACTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp CACCCCTTCTATGTTACTAGTTACTGGGTAAGGAGAGGCATGTATCTGGTAGAGAATGAGGTCCTTTCTTaGTGTCTCTGCTTCTTGTTC +
Preference number: 4 (lower is better)
Translates to: HPFYVTSYWVRRGMYLVENEVLS*CLCFLF
Trigger: GAACAAGAAGCAGAGACAGCAAGAAAGGACCTCATT...CTCTACCAGATACATGCCTCTCCTTACCCAGTAACTAGTAACATAGAAGGGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAAGTTGGCTCTGCATGCTaGCACGTACCAAGCTGGCAT +
Preference number: 4 (lower is better)
Translates to: LVITDLSLANALLTVIFKVGSAC*HVPSWH
Trigger: ATGCCAGCTTGGTACGTGGCAGCATGCAGAGCCAAC...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAATGCAGCAAACTCCGGTaGATCAGCCCCCTTAGAACC +
Preference number: 4 (lower is better)
Translates to: LVITDLSLANALLTVIFKCSKLR*ISPLRT
Trigger: GGTTCTAAGGGGGCTGATCCACCGGAGTTTGCTGCA...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACAAGGGATTCGATGTCCTaGGGTAGGGCTGAATTCAGC +
Preference number: 4 (lower is better)
Translates to: NNNLLMTGLALRPSSRETRDSMS*GRAEFS
Trigger: GCTGAATTCAGCCCTACCTCAGGACATCGAATCCCT...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp ACACCTGGGAAGGAGCTGTTTTTCTTATGTTTCAATGAGGAAAGCCATCTCTCCATGAACTTTCTGGCCTaGTTCCATTCCTTCAAGATG +
Preference number: 4 (lower is better)
Translates to: TPGKELFFLCFNEESHLSMNFLA*FHSFKM
Trigger: CATCTTGAAGGAATGGAAGCAGGCCAGAAAGTTCAT...GGAGAGATGGCTTTCCTCATTGAAACATAAGAAAAACAGCTCCTTCCCAGGTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTGTCTGCTGTAACTTTTaGTCAGCCAGTTCAAGACGC +
Preference number: 4 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLVCCNF*SASSRR
Trigger: GCGTCTTGAACTGGCTGAGCAAAAGTTACAGCAGAC...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTTCCTTCAGGTGTAGTTaGAGGCGCTCATTGGATTCT +
Preference number: 4 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLSFRCS*RRSLDS
Trigger: AGAATCCAATGAGCGCCTGCAACTACACCTGAAGGA...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp TTACTGCAAGAGCCTCTTGTTTTCAAGAGAACCCCAAACATTTACTTGTATTGCCTGAGCTTTAAGCGGTaGAGAGGGTTGCTGATTCCA +
Preference number: 4 (lower is better)
Translates to: LLQEPLVFKRTPNIYLYCLSFKR*RGLLIP
Trigger: TGGAATCAGCAACCCTCTGCACCGCTTAAAGCTCAG...GCAATACAAGTAAATGTTTGGGGTTCTCTTGAAAACAAGAGGCTCTTGCAGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTGCTATAAGTGAGCCATaGACGCCACTCTCAAGAATG +
Preference number: 4 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLAISEP*TPLSRM
Trigger: CATTCTTGAGAGTGGCGTGCATGGCTCACTTATAGC...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTTTCAAGAATCTGCCTTaGCTGGGTGTTCTGTGTTGG +
Preference number: 4 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLFKNLP*LGVLCW
Trigger: CCAACACAGAACACCCAGGCAAGGCAGATTCTTGAA...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACACTTCCTTCTGAGCCATaGCCTCTCGGATGTCCCTTT +
Preference number: 4 (lower is better)
Translates to: NNNLLMTGLALRPSSRETLPSEP*PLGCPF
Trigger: AAAGGGACATCCGAGAGGCCATGGCTCAGAAGGAAG...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp ACTGCTTTAGGTGACAGTGTGAGTGGTTTACCTAATTGGATATTGATTATTCCCGTCTGGGCATCAGAATaGCCACTTGGAGAGAGAAGA +
Preference number: 4 (lower is better)
Translates to: TALGDSVSGLPNWILIIPVWASE*PLGERR
Trigger: TCTTCTCTCTCCAAGTGGCCATTCTGATGCCCAGAC...GGGAATAATCAATATCCAATTAGGTAAACCACTCACACTGTCACCTAAAGCAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp TTACTGCAAGAGCCTCTTGTTTTCAAGAGAACCCCAAACATTTACTTGTATTGCAATCTTGGCTGCTATTaGCACTGCCAAGCCCAAGAC +
Preference number: 4 (lower is better)
Translates to: LLQEPLVFKRTPNIYLYCNLGCY*HCQAQD
Trigger: GTCTTGGGCTTGGCAGTGCCAATAGCAGCCAAGATT...GCAATACAAGTAAATGTTTGGGGTTCTCTTGAAAACAAGAGGCTCTTGCAGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp GACGAGACTGCTTTAGGTGACAGTGTGAGTGGTTTACCTAATTGGATATTGATTTTGTGGAGAGAATCTTaGCTGCTATTGGCACTGCCA +
Preference number: 4 (lower is better)
Translates to: DETALGDSVSGLPNWILILWRES*LLLALP
Trigger: TGGCAGTGCCAATAGCAGCCAAGATTCTCTCCACAA...AATCAATATCCAATTAGGTAAACCACTCACACTGTCACCTAAAGCAGTCTCGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAAAGAAAAACCGGACACTaGGCCCAGCTTCCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: LVITDLSLANALLTVIFKRKTGH*AQLPSS
Trigger: TGAGGAAGGAAGCTGGGCCCAGTGTCCGGTTTTTCT...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp GTATTTATTGAACCTCTGAGAGGTCTTGGAAGAGTTTCTCAATTCTTCAGCTTTAGAAAAACCGGACACTaGGCCCAGCTTCCTTCCTCA +
Preference number: 4 (lower is better)
Translates to: VFIEPLRGLGRVSQFFSFRKTGH*AQLPSS
Trigger: TGAGGAAGGAAGCTGGGCCCAGTGTCCGGTTTTTCT...AAAGCTGAAGAATTGAGAAACTCTTCCAAGACCTCTCAGAGGTTCAATAAATAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTAGAATCTGCCTTGCCTaGGTGTTCTGTGTTGGAATC +
Preference number: 4 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLRICLA*VFCVGI
Trigger: GATTCCAACACAGAACACCCAGGCAAGGCAGATTCT...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAACTGTCGTCATTTTCCTaGACTGCCCAGACGTTGTGG +
Preference number: 4 (lower is better)
Translates to: LVITDLSLANALLTVIFKLSSFS*TAQTLW
Trigger: CCACAACGTCTGGGCAGTCCAGGAAAATGACGACAG...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTCGTGGACCCCTCACTTaGTACCATTTTCCTTTGAAT +
Preference number: 4 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLRGPLT*YHFPLN
Trigger: ATTCAAAGGAAAATGGTATCAAGTGAGGGGTCCACG...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp CCTCTATCAGCTGGTTTAGACCTCCCTCTAGTGGCAGACTCAATTTTGAATAGAGTTCTCATTTTCATTTaGTCAAGTTCAGACCTCAGC +
Preference number: 4 (lower is better)
Translates to: PLSAGLDLPLVADSILNRVLIFI*SSSDLS
Trigger: GCTGAGGTCTGAACTTGATCAAATGAAAATGAGAAC...TCTATTCAAAATTGAGTCTGCCACTAGAGGGAGGTCTAAACCAGCTGATAGAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATGAAGATGGTAAGGTGTaGGTCATTCTGACGGCTCTG +
Preference number: 4 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHEDGKV*VILTAL
Trigger: CAGAGCCGTCAGAATGACTCACACCTTACCATCTTC...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp TCTAGTGTATTGAGGAACGTGTCTTTGGTGTACAGTTTTACAAATTCATGTGCTGAAGATGGTAAGGTGTaGGTCATTCTGACGGCTCTG +
Preference number: 4 (lower is better)
Translates to: SSVLRNVSLVYSFTNSCAEDGKV*VILTAL
Trigger: CAGAGCCGTCAGAATGACTCACACCTTACCATCTTC...AGCACATGAATTTGTAAAACTGTACACCAAAGACACGTTCCTCAATACACTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAAACCCAGGCATCATGCTaGTTCCATGAACTTCACGAG +
Preference number: 4 (lower is better)
Translates to: LVITDLSLANALLTVIFKTQASC*FHELHE
Trigger: CTCGTGAAGTTCATGGAATCAGCATGATGCCTGGGT...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp GTATTTATTGAACCTCTGAGAGGTCTTGGAAGAGTTTCTCAATTCTTCAGCTTTACCCAGGCATCATGCTaGTTCCATGAACTTCACGAG +
Preference number: 4 (lower is better)
Translates to: VFIEPLRGLGRVSQFFSFTQASC*FHELHE
Trigger: CTCGTGAAGTTCATGGAATCAGCATGATGCCTGGGT...AAAGCTGAAGAATTGAGAAACTCTTCCAAGACCTCTCAGAGGTTCAATAAATAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTGCTTTTCTCATGGTCTaGTGTAACTTTTGCTCAGCC +
Preference number: 4 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLAFLMV*CNFCSA
Trigger: GGCTGAGCAAAAGTTACAGCAGACCATGAGAAAAGC...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp ACTGCTTTAGGTGACAGTGTGAGTGGTTTACCTAATTGGATATTGATTATTCCCCTTGAGTTCCAAGTTTaGCTAAGCCCAGGGATTCCT +
Preference number: 4 (lower is better)
Translates to: TALGDSVSGLPNWILIIPLEFQV*LSPGIP
Trigger: AGGAATCCCTGGGCTTAGGCAAACTTGGAACTCAAG...GGGAATAATCAATATCCAATTAGGTAAACCACTCACACTGTCACCTAAAGCAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAATTTTCACGTTGGCTCTaGATGCTGCCACGTACCAAG +
Preference number: 4 (lower is better)
Translates to: LVITDLSLANALLTVIFKFSRWL*MLPRTK
Trigger: CTTGGTACGTGGCAGCATGCAGAGCCAACGTGAAAA...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACACTGAGCTTTAAGCGGTaGAGAGGGTTGCTGATTCCA +
Preference number: 4 (lower is better)
Translates to: NNNLLMTGLALRPSSRETLSFKR*RGLLIP
Trigger: TGGAATCAGCAACCCTCTGCACCGCTTAAAGCTCAG...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp ACACCTGGGAAGGAGCTGTTTTTCTTATGTTTCAATGAGGAAAGCCATCTCTCCACAATAGAGCCAAGCTaGTGTAGTCAAAGTTCTCAT +
Preference number: 4 (lower is better)
Translates to: TPGKELFFLCFNEESHLSTIEPS*CSQSSH
Trigger: ATGAGAACTTTGACTACAGCAGCTTGGCTCTATTGT...GGAGAGATGGCTTTCCTCATTGAAACATAAGAAAAACAGCTCCTTCCCAGGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAAGTCATTTTCCTGGACTaGCCAGACGTTGTGGTCAAC +
Preference number: 4 (lower is better)
Translates to: LVITDLSLANALLTVIFKVIFLD*PDVVVN
Trigger: GTTGACCACAACGTCTGGGCAGTCCAGGAAAATGAC...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp CCTGGGAAGGAGCTGTTTTTCTTATGTTTCAATGAGGAAAGCCATCTCTCCTGCTCATCCAAGGCTTTGTaGTGTTCAAACAAAGATTTC +
Preference number: 4 (lower is better)
Translates to: PGKELFFLCFNEESHLSCSSKAL*CSNKDF
Trigger: GAAATCTTTGTTTGAACACCACAAAGCCTTGGATGA...GCAGGAGAGATGGCTTTCCTCATTGAAACATAAGAAAAACAGCTCCTTCCCAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATGTTGCAGGCGCTCATTaGATTCTGTCAGAAGCCTGT +
Preference number: 4 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHVAGAH*ILSEAC
Trigger: ACAGGCTTCTGACAGAATCCAATGAGCGCCTGCAAC...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATGTCTGGGCATCAGAATaGCCACTTGGAGAGAGAAGA +
Preference number: 4 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHVWASE*PLGERR
Trigger: TCTTCTCTCTCCAAGTGGCCATTCTGATGCCCAGAC...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAAAATCTTGGCTGCTATTaGCACTGCCAAGCCCAAGAC +
Preference number: 4 (lower is better)
Translates to: LVITDLSLANALLTVIFKNLGCY*HCQAQD
Trigger: GTCTTGGGCTTGGCAGTGCCAATAGCAGCCAAGATT...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
3UTR CAA 72 bp TTAGGTGACAGTGTGAGTGGTTTACCTAATTGGATATaGATTATTCCCCCAAAAGCTTCTGTGCTGAATGCG +
Preference number: 4 (lower is better)
Translates to: LGDSVSGLPNWI*IIPPKASVLNA
Trigger: CGCATTCAGCACAGAAGCTTTTGGGGGAATAATCAATATCCAATTAGGTAAACCACTCACACTGTCACCTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
3UTR CAA 72 bp CTCAGGAGAGAGGCTTTACCTTACTGCAAGAGCCTCTaGTTTTCAAGAGAACCCCAAACATTTACTTGTATT +
Preference number: 4 (lower is better)
Translates to: LRREALPYCKSL*FSREPQTFTCI
Trigger: AATACAAGTAAATGTTTGGGGTTCTCTTGAAAACAAGAGGCTCTTGCAGTAAGGTAAAGCCTCTCTCCTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATCAGCTGTCTCTGGAGTaGATCTCTGTCATAGATGAC +
Preference number: 4 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHQLSLE*ISVIDD
Trigger: GTCATCTATGACAGAGATTCACTCCAGAGACAGCTG...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp CCTCTATCAGCTGGTTTAGACCTCCCTCTAGTGGCAGACTCAATTTTGAATAGATCTTTTATTTCATGTTaGCTTGCTTCTCGTCTTCTC +
Preference number: 4 (lower is better)
Translates to: PLSAGLDLPLVADSILNRSFISC*LASRLL
Trigger: GAGAAGACGAGAAGCAAGTCAACATGAAATAAAAGA...TCTATTCAAAATTGAGTCTGCCACTAGAGGGAGGTCTAAACCAGCTGATAGAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACAATCATGCTGATTCCATaGACTTCACGAGGAGGGAAC +
Preference number: 4 (lower is better)
Translates to: NNNLLMTGLALRPSSRETIMLIP*TSRGGN
Trigger: GTTCCCTCCTCGTGAAGTTCATGGAATCAGCATGAT...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACACAACTCTTTAGTCAGTaGAGCAAACTCCGGTGGATC +
Preference number: 4 (lower is better)
Translates to: NNNLLMTGLALRPSSRETQLFSQ*SKLRWI
Trigger: GATCCACCGGAGTTTGCTGCACTGACTAAAGAGTTG...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp ACACAGGTATCTAAATACGAGTATAAATCTTTCTGCCATGCAGGTATCAGAGTTGTCTGCTGTAACTTTTaGTCAGCCAGTTCAAGACGC +
Preference number: 4 (lower is better)
Translates to: TQVSKYEYKSFCHAGIRVVCCNF*SASSRR
Trigger: GCGTCTTGAACTGGCTGAGCAAAAGTTACAGCAGAC...AACTCTGATACCTGCATGGCAGAAAGATTTATACTCGTATTTAGATACCTGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp GTATTTATTGAACCTCTGAGAGGTCTTGGAAGAGTTTCTCAATTCTTCAGCTTTTCCTTCAGGTGTAGTTaGAGGCGCTCATTGGATTCT +
Preference number: 4 (lower is better)
Translates to: VFIEPLRGLGRVSQFFSFSFRCS*RRSLDS
Trigger: AGAATCCAATGAGCGCCTGCAACTACACCTGAAGGA...AAAGCTGAAGAATTGAGAAACTCTTCCAAGACCTCTCAGAGGTTCAATAAATAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACACTTGAGTTCCAAGTTTaGCTAAGCCCAGGGATTCCT +
Preference number: 4 (lower is better)
Translates to: NNNLLMTGLALRPSSRETLEFQV*LSPGIP
Trigger: AGGAATCCCTGGGCTTAGGCAAACTTGGAACTCAAG...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp CCTCTATCAGCTGGTTTAGACCTCCCTCTAGTGGCAGACTCAATTTTGAATAGAAGATTCTTTCGTTTTTaGTGGAGCTGTCAGATTTTC +
Preference number: 4 (lower is better)
Translates to: PLSAGLDLPLVADSILNRRFFRF*WSCQIF
Trigger: GAAAATCTGACAGCTCCAGCAAAAACGAAAGAATCT...TCTATTCAAAATTGAGTCTGCCACTAGAGGGAGGTCTAAACCAGCTGATAGAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp GACGAGACTGCTTTAGGTGACAGTGTGAGTGGTTTACCTAATTGGATATTGATTTTCTGTGTTGGAATCTaGAACAATAGAGCCAAGCTG +
Preference number: 4 (lower is better)
Translates to: DETALGDSVSGLPNWILIFCVGI*NNRAKL
Trigger: CAGCTTGGCTCTATTGTTGCAGATTCCAACACAGAA...AATCAATATCCAATTAGGTAAACCACTCACACTGTCACCTAAAGCAGTCTCGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp TTACTGCAAGAGCCTCTTGTTTTCAAGAGAACCCCAAACATTTACTTGTATTGCAAGGGATTTCACCTTTaGTTCATCTCTTCGCACACC +
Preference number: 4 (lower is better)
Translates to: LLQEPLVFKRTPNIYLYCKGFHL*FISSHT
Trigger: GGTGTGCGAAGAGATGAACCAAAGGTGAAATCCCTT...GCAATACAAGTAAATGTTTGGGGTTCTCTTGAAAACAAGAGGCTCTTGCAGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTTCACTTTCGAAAGGGTaGCTTCCTAGTACTCCAATT +
Preference number: 4 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLSLSKG*LPSTPI
Trigger: AATTGGAGTACTAGGAAGCCACCCTTTCGAAAGTGA...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACATTGTGGAGAGAATCTTaGCTGCTATTGGCACTGCCA +
Preference number: 4 (lower is better)
Translates to: NNNLLMTGLALRPSSRETLWRES*LLLALP
Trigger: TGGCAGTGCCAATAGCAGCCAAGATTCTCTCCACAA...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATAGAATCTGCCTTGCCTaGGTGTTCTGTGTTGGAATC +
Preference number: 4 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHRICLA*VFCVGI
Trigger: GATTCCAACACAGAACACCCAGGCAAGGCAGATTCT...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACAAATCTCTGTCATAGATaGCATCCTGGAGCCTTTGCT +
Preference number: 4 (lower is better)
Translates to: NNNLLMTGLALRPSSRETNLCHR*HPGAFA
Trigger: AGCAAAGGCTCCAGGATGTCATCTATGACAGAGATT...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAACTGTCCTTTTCAGCTTaGGTTCCAAGTTTGCCTAAG +
Preference number: 4 (lower is better)
Translates to: LVITDLSLANALLTVIFKLSFSA*VPSLPK
Trigger: CTTAGGCAAACTTGGAACTCAAGCTGAAAAGGACAG...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATACGTTGTGGTCAACCTaGATCCAGCTGGTAATGTTT +
Preference number: 4 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHTLWST*IQLVMF
Trigger: AAACATTACCAGCTGGATTCAGGTTGACCACAACGT...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTAAACAAAGATTTCAGTaGCTTGAGAACCTCCACTTC +
Preference number: 4 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLKQRFQ*LENLHF
Trigger: GAAGTGGAGGTTCTCAAGGCACTGAAATCTTTGTTT...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAAGCTTTTCTCATGGTCTaGTGTAACTTTTGCTCAGCC +
Preference number: 4 (lower is better)
Translates to: LVITDLSLANALLTVIFKAFLMV*CNFCSA
Trigger: GGCTGAGCAAAAGTTACAGCAGACCATGAGAAAAGC...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACAGAGTTGTCTAACCTCTaGAGTCTTGATGAAGCAACG +
Preference number: 4 (lower is better)
Translates to: NNNLLMTGLALRPSSRETELSNL*SLDEAT
Trigger: CGTTGCTTCATCAAGACTGCAGAGGTTAGACAACTC...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACATTCTTCTCTTCAAGTTaGCCCTCGAGGTGTCTCATA +
Preference number: 4 (lower is better)
Translates to: NNNLLMTGLALRPSSRETFFSSS*PSRCLI
Trigger: TATGAGACACCTCGAGGGCCAACTTGAAGAGAAGAA...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp ACACAGGTATCTAAATACGAGTATAAATCTTTCTGCCATGCAGGTATCAGAGTTTTCTTCTCTTCAAGTTaGCCCTCGAGGTGTCTCATA +
Preference number: 4 (lower is better)
Translates to: TQVSKYEYKSFCHAGIRVFFSSS*PSRCLI
Trigger: TATGAGACACCTCGAGGGCCAACTTGAAGAGAAGAA...AACTCTGATACCTGCATGGCAGAAAGATTTATACTCGTATTTAGATACCTGTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAACATGCGGCCTCTCCTTaGTCTTCGTATTACTTTAGT +
Preference number: 4 (lower is better)
Translates to: LVITDLSLANALLTVIFKHAASP*SSYYFS
Trigger: ACTAAAGTAATACGAAGACCAAGGAGAGGCCGCATG...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp ACACAGGTATCTAAATACGAGTATAAATCTTTCTGCCATGCAGGTATCAGAGTTCATGCGGCCTCTCCTTaGTCTTCGTATTACTTTAGT +
Preference number: 4 (lower is better)
Translates to: TQVSKYEYKSFCHAGIRVHAASP*SSYYFS
Trigger: ACTAAAGTAATACGAAGACCAAGGAGAGGCCGCATG...AACTCTGATACCTGCATGGCAGAAAGATTTATACTCGTATTTAGATACCTGTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAAAAGGGATTTCACCTTTaGTTCATCTCTTCGCACACC +
Preference number: 4 (lower is better)
Translates to: LVITDLSLANALLTVIFKKGFHL*FISSHT
Trigger: GGTGTGCGAAGAGATGAACCAAAGGTGAAATCCCTT...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTATTCCAATCTCCCTTTaGATTTCAGTGTCCGATAAC +
Preference number: 4 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLIPISL*ISVSDN
Trigger: GTTATCGGACACTGAAATCCAAAGGGAGATTGGAAT...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAAAGTATGTGCGAACAGTaGAGTTGTCTAACCTCTGCA +
Preference number: 4 (lower is better)
Translates to: LVITDLSLANALLTVIFKSMCEQ*SCLTSA
Trigger: TGCAGAGGTTAGACAACTCCACTGTTCGCACATACT...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACAGCATCCAATTGTTCTTaGAGCATCATAGCTAGAGTC +
Preference number: 4 (lower is better)
Translates to: NNNLLMTGLALRPSSRETASNCS*SIIARV
Trigger: GACTCTAGCTATGATGCTTCAAGAACAATTGGATGC...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATGCATCCAATTGTTCTTaGAGCATCATAGCTAGAGTC +
Preference number: 4 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHASNCS*SIIARV
Trigger: GACTCTAGCTATGATGCTTCAAGAACAATTGGATGC...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACAATATTGACCATGAGTTaGTCAAAATGGGAGTCCGAG +
Preference number: 4 (lower is better)
Translates to: NNNLLMTGLALRPSSRETILTMS*SKWESE
Trigger: CTCGGACTCCCATTTTGAGCAACTCATGGTCAATAT...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp TCTAGTGTATTGAGGAACGTGTCTTTGGTGTACAGTTTTACAAATTCATGTGCTATATTGACCATGAGTTaGTCAAAATGGGAGTCCGAG +
Preference number: 4 (lower is better)
Translates to: SSVLRNVSLVYSFTNSCAILTMS*SKWESE
Trigger: CTCGGACTCCCATTTTGAGCAACTCATGGTCAATAT...AGCACATGAATTTGTAAAACTGTACACCAAAGACACGTTCCTCAATACACTAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATATGAACTTTCTGGCCTaGTTCCATTCCTTCAAGATG +
Preference number: 4 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHMNFLA*FHSFKM
Trigger: CATCTTGAAGGAATGGAAGCAGGCCAGAAAGTTCAT...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACAAATGAGGTCCTTTCTTaGTGTCTCTGCTTCTTGTTC +
Preference number: 4 (lower is better)
Translates to: NNNLLMTGLALRPSSRETNEVLS*CLCFLF
Trigger: GAACAAGAAGCAGAGACAGCAAGAAAGGACCTCATT...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp TTACTGCAAGAGCCTCTTGTTTTCAAGAGAACCCCAAACATTTACTTGTATTGCATCTTCTTCCACCACTaGAATCTTTCTCCGATGTTT +
Preference number: 4 (lower is better)
Translates to: LLQEPLVFKRTPNIYLYCIFFHH*NLSPMF
Trigger: AAACATCGGAGAAAGATTGCAGTGGTGGAAGAAGAT...GCAATACAAGTAAATGTTTGGGGTTCTCTTGAAAACAAGAGGCTCTTGCAGTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATTTCCCGAAGTCCAATTaGTTGTATCCAGCGAATAAC +
Preference number: 4 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHFPKSN*LYPANN
Trigger: GTTATTCGCTGGATACAAGCAATTGGACTTCGGGAA...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp GACGAGACTGCTTTAGGTGACAGTGTGAGTGGTTTACCTAATTGGATATTGATTCTCAAGAATGTTGTTTaGATATTCCCGAAGTCCAAT +
Preference number: 4 (lower is better)
Translates to: DETALGDSVSGLPNWILILKNVV*IFPKSN
Trigger: ATTGGACTTCGGGAATATGCAAACAACATTCTTGAG...AATCAATATCCAATTAGGTAAACCACTCACACTGTCACCTAAAGCAGTCTCGTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACATTCTGTGTTGGAATCTaGAACAATAGAGCCAAGCTG +
Preference number: 4 (lower is better)
Translates to: NNNLLMTGLALRPSSRETFCVGI*NNRAKL
Trigger: CAGCTTGGCTCTATTGTTGCAGATTCCAACACAGAA...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATAATACCGCAACTCAGTaGAGGTGTCTATATGAGTTC +
Preference number: 4 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHNTATQ*RCLYEF
Trigger: GAACTCATATAGACACCTCCACTGAGTTGCGGTATT...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAAAATACCGCAACTCAGTaGAGGTGTCTATATGAGTTC +
Preference number: 4 (lower is better)
Translates to: LVITDLSLANALLTVIFKNTATQ*RCLYEF
Trigger: GAACTCATATAGACACCTCCACTGAGTTGCGGTATT...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATTCACTTTCGAAAGGGTaGCTTCCTAGTACTCCAATT +
Preference number: 4 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHSLSKG*LPSTPI
Trigger: AATTGGAGTACTAGGAAGCCACCCTTTCGAAAGTGA...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAATTTTCCATTTCTTCATaGGTCACCCACACATTGCCT +
Preference number: 4 (lower is better)
Translates to: LVITDLSLANALLTVIFKFSISS*VTHTLP
Trigger: AGGCAATGTGTGGGTGACCCATGAAGAAATGGAAAA...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp TCTAGTGTATTGAGGAACGTGTCTTTGGTGTACAGTTTTACAAATTCATGTGCTTTTTCCATTTCTTCATaGGTCACCCACACATTGCCT +
Preference number: 4 (lower is better)
Translates to: SSVLRNVSLVYSFTNSCAFSISS*VTHTLP
Trigger: AGGCAATGTGTGGGTGACCCATGAAGAAATGGAAAA...AGCACATGAATTTGTAAAACTGTACACCAAAGACACGTTCCTCAATACACTAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATGTTCTCATTTTCATTTaGTCAAGTTCAGACCTCAGC +
Preference number: 4 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHVLIFI*SSSDLS
Trigger: GCTGAGGTCTGAACTTGATCAAATGAAAATGAGAAC...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp ACACAGGTATCTAAATACGAGTATAAATCTTTCTGCCATGCAGGTATCAGAGTTAAACAAAGATTTCAGTaGCTTGAGAACCTCCACTTC +
Preference number: 4 (lower is better)
Translates to: TQVSKYEYKSFCHAGIRVKQRFQ*LENLHF
Trigger: GAAGTGGAGGTTCTCAAGGCACTGAAATCTTTGTTT...AACTCTGATACCTGCATGGCAGAAAGATTTATACTCGTATTTAGATACCTGTGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATATCTTCTTCCACCACTaGAATCTTTCTCCGATGTTT +
Preference number: 4 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHIFFHH*NLSPMF
Trigger: AAACATCGGAGAAAGATTGCAGTGGTGGAAGAAGAT...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATACAATAGAGCCAAGCTaGTGTAGTCAAAGTTCTCAT +
Preference number: 4 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHTIEPS*CSQSSH
Trigger: ATGAGAACTTTGACTACAGCAGCTTGGCTCTATTGT...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACAATTCCAATCTCCCTTTaGATTTCAGTGTCCGATAAC +
Preference number: 4 (lower is better)
Translates to: NNNLLMTGLALRPSSRETIPISL*ISVSDN
Trigger: GTTATCGGACACTGAAATCCAAAGGGAGATTGGAAT...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR TCA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACATCTTTTATTTCATGTTaGCTTGCTTCTCGTCTTCTC +
Preference number: 4 (lower is better)
Translates to: NNNLLMTGLALRPSSRETSFISC*LASRLL
Trigger: GAGAAGACGAGAAGCAAGTCAACATGAAATAAAAGA...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAATCTTCAATATTTCCATaGCTCTCTTCAGCCTTTGTT +
Preference number: 4 (lower is better)
Translates to: LVITDLSLANALLTVIFKSSIFP*LSSAFV
Trigger: AACAAAGGCTGAAGAGAGGCATGGAAATATTGAAGA...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACATCTTCAATATTTCCATaGCTCTCTTCAGCCTTTGTT +
Preference number: 4 (lower is better)
Translates to: NNNLLMTGLALRPSSRETSSIFP*LSSAFV
Trigger: AACAAAGGCTGAAGAGAGGCATGGAAATATTGAAGA...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAATCTTCAAGAAGTTCATaGTTTTTCTTCAGCCTTCTG +
Preference number: 4 (lower is better)
Translates to: LVITDLSLANALLTVIFKSSRSS*FFFSLL
Trigger: CAGAAGGCTGAAGAAAAAGCATGAACTTCTTGAAGA...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp TCTAGTGTATTGAGGAACGTGTCTTTGGTGTACAGTTTTACAAATTCATGTGCTTCTTCAAGAAGTTCATaGTTTTTCTTCAGCCTTCTG +
Preference number: 4 (lower is better)
Translates to: SSVLRNVSLVYSFTNSCASSRSS*FFFSLL
Trigger: CAGAAGGCTGAAGAAAAAGCATGAACTTCTTGAAGA...AGCACATGAATTTGTAAAACTGTACACCAAAGACACGTTCCTCAATACACTAGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAAAGATTCTTTCGTTTTTaGTGGAGCTGTCAGATTTTC +
Preference number: 4 (lower is better)
Translates to: LVITDLSLANALLTVIFKRFFRF*WSCQIF
Trigger: GAAAATCTGACAGCTCCAGCAAAAACGAAAGAATCT...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR GCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAACTCAAGAATGTTGTTTaGATATTCCCGAAGTCCAAT +
Preference number: 4 (lower is better)
Translates to: LVITDLSLANALLTVIFKLKNVV*IFPKSN
Trigger: ATTGGACTTCGGGAATATGCAAACAACATTCTTGAG...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACATCATCCAAGGCTTTGTaGTGTTCAAACAAAGATTTC +
Preference number: 4 (lower is better)
Translates to: NNNLLMTGLALRPSSRETSSKAL*CSNKDF
Trigger: GAAATCTTTGTTTGAACACCACAAAGCCTTGGATGA...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CCA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAATTTCAGCTTTTCTCATaGTCTGCTGTAACTTTTGCT +
Preference number: 4 (lower is better)
Translates to: LVITDLSLANALLTVIFKFQLFS*SAVTFA
Trigger: AGCAAAAGTTACAGCAGACCATGAGAAAAGCTGAAA...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
3UTR CAA 72 bp AAACTGGAGGCATTTGTTGTTGTTGTTGTTGTTTTATaGATAATGGAGAGGTTTTCTGTTACCATTACCGTT +
Preference number: 4 (lower is better)
Translates to: KLEAFVVVVVVL*IMERFSVTITV
Trigger: AACGGTAATGGTAACAGAAAACCTCTCCATTATCAATAAAACAACAACAACAACAACAAATGCCTCCAGTTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS TCA 90 bp CCAGCTGGTAATGTTTCTGAGGACCCAGGCATCATGCTGATTCCATaGACTTCACGAGGAGGGAACTGCCTTCGCCAGGTTGATCCCCGT +
Preference number: 5 (lower is better)
Translates to: PAGNVSEDPGIMLIP*TSRGGNCLRQVDPR
Trigger: ACGGGGATCAACCTGGCGAAGGCAGTTCCCTCCTCGTGAAGTTCATGGAATCAGCATGATGCCTGGGTCCTCAGAAACATTACCAGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS TCA 90 bp GTAGGGCTGAATTCAGCTGTCTCTGGAGTGAATCTCTGTCATAGATaGCATCCTGGAGCCTTTGCTGGGCAAGTGAGAGGCTCTCCTGGG +
Preference number: 5 (lower is better)
Translates to: VGLNSAVSGVNLCHR*HPGAFAGQVRGSPG
Trigger: CCCAGGAGAGCCTCTCACTTGCCCAGCAAAGGCTCCAGGATGTCATCTATGACAGAGATTCACTCCAGAGACAGCTGAATTCAGCCCTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS TCA 90 bp GAACTTCACGAGGAGGGAACTGCCTTCGCCAGGTTGATCCCCGTCTaGAATTCTTGTCGTCACTTTCATCCAGTCTCCGCTCAGTTCCCA +
Preference number: 5 (lower is better)
Translates to: ELHEEGTAFARLIPV*NSCRHFHPVSAQFP
Trigger: TGGGAACTGAGCGGAGACTGGATGAAAGTGACGACAAGAATTTCAGACGGGGATCAACCTGGCGAAGGCAGTTCCCTCCTCGTGAAGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS TCA 90 bp GCTGATTCCATGAACTTCACGAGGAGGGAACTGCCTTCGCCAGGTTaGTCCCCGTCTGAAATTCTTGTCGTCACTTTCATCCAGTCTCCG +
Preference number: 5 (lower is better)
Translates to: ADSMNFTRRELPSPG*SPSEILVVTFIQSP
Trigger: CGGAGACTGGATGAAAGTGACGACAAGAATTTCAGACGGGGATCAACCTGGCGAAGGCAGTTCCCTCCTCGTGAAGTTCATGGAATCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CCA 90 bp GCCAGTGATGAAGCTGTAACAGAGGCAGTGATGGAGGTACCTGGATaGACCCTCGCCAAATTCAGCCCTTCTAAGCTTACACTAGCCACT +
Preference number: 5 (lower is better)
Translates to: ASDEAVTEAVMEVPG*TLAKFSPSKLTLAT
Trigger: AGTGGCTAGTGTAAGCTTAGAAGGGCTGAATTTGGCGAGGGTCCATCCAGGTACCTCCATCACTGCCTCTGTTACAGCTTCATCACTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CCA 90 bp TTGCTGAGTTCTGTTCCACTCATGATCTCCAAGGGATTTCACCTTTaGTTCATCTCTTCGCACACCCATGCGGCCTCTCCTTGGTCTTCG +
Preference number: 5 (lower is better)
Translates to: LLSSVPLMISKGFHL*FISSHTHAASPWSS
Trigger: CGAAGACCAAGGAGAGGCCGCATGGGTGTGCGAAGAGATGAACCAAAGGTGAAATCCCTTGGAGATCATGAGTGGAACAGAACTCAGCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp ACACCTGGGAAGGAGCTGTTTTTCTTATGTTTCAATGAGGAAAGCCATCTCTCCAGAGGGAGACTGGGCTaGCCGCTTGACCACCGTCAT +
Preference number: 5 (lower is better)
Translates to: TPGKELFFLCFNEESHLSRGRLG*PLDHRH
Trigger: ATGACGGTGGTCAAGCGGCAAGCCCAGTCTCCCTCT...GGAGAGATGGCTTTCCTCATTGAAACATAAGAAAAACAGCTCCTTCCCAGGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp CCTGGGAAGGAGCTGTTTTTCTTATGTTTCAATGAGGAAAGCCATCTCTCCTGCGCGTTGAGTGTCCACTaGGGGGAGATGAACTGGCCA +
Preference number: 5 (lower is better)
Translates to: PGKELFFLCFNEESHLSCALSVH*GEMNWP
Trigger: TGGCCAGTTCATCTCCCCCAAGTGGACACTCAACGC...GCAGGAGAGATGGCTTTCCTCATTGAAACATAAGAAAAACAGCTCCTTCCCAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AGTAGGTTGCTTAGCAACACAGGACCCCAGGGTGGAGCACCCCTTCTATGTTACGGTGGTCTAACATTCTaGCATCAACCAAGCATTCCA +
Preference number: 5 (lower is better)
Translates to: SRLLSNTGPQGGAPLLCYGGLTF*HQPSIP
Trigger: TGGAATGCTTGGTTGATGCAAGAATGTTAGACCACC...GTAACATAGAAGGGGTGCTCCACCCTGGGGTCCTGTGTTGCTAAGCAACCTACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS GCA 90 bp CTCTGCAGTCTTGATGAAGCAACGTCTGTCGTCATTTTCCTGGACTaGCCAGACGTTGTGGTCAACCTGAATCCAGCTGGTAATGTTTCT +
Preference number: 5 (lower is better)
Translates to: LCSLDEATSVVIFLD*PDVVVNLNPAGNVS
Trigger: AGAAACATTACCAGCTGGATTCAGGTTGACCACAACGTCTGGGCAGTCCAGGAAAATGACGACAGACGTTGCTTCATCAAGACTGCAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CCA 90 bp GATTCTTTCGTTTTTGCTGGAGCTGTCAGATTTTCCATTTCTTCATaGGTCACCCACACATTGCCTGAAGGAGTACGCGATGTCGGAGGC +
Preference number: 5 (lower is better)
Translates to: DSFVFAGAVRFSISS*VTHTLPEGVRDVGG
Trigger: GCCTCCGACATCGCGTACTCCTTCAGGCAATGTGTGGGTGACCCATGAAGAAATGGAAAATCTGACAGCTCCAGCAAAAACGAAAGAATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTGTCGGAGCCACTGCTTaGGGAACCCCGTTGGCTCAT +
Preference number: 5 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLVGATA*GTPLAH
Trigger: ATGAGCCAACGGGGTTCCCAAAGCAGTGGCTCCGAC...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp ACACCTGGGAAGGAGCTGTTTTTCTTATGTTTCAATGAGGAAAGCCATCTCTCCGACTGGGCTTGCCGCTaGACCACCGTCATTCTTAGT +
Preference number: 5 (lower is better)
Translates to: TPGKELFFLCFNEESHLSDWACR*TTVILS
Trigger: ACTAAGAATGACGGTGGTCAAGCGGCAAGCCCAGTC...GGAGAGATGGCTTTCCTCATTGAAACATAAGAAAAACAGCTCCTTCCCAGGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS CCA 90 bp GCTCGACGATTTGGCTGGTGTCATCTGTCGAATCTATGGAGCCATTaGATAGACGCTTTTCATGAACTTTCTGGCCTGCTTCCATTCCTT +
Preference number: 5 (lower is better)
Translates to: ARRFGWCHLSNLWSH*IDAFHELSGLLPFL
Trigger: AAGGAATGGAAGCAGGCCAGAAAGTTCATGAAAAGCGTCTATCCAATGGCTCCATAGATTCGACAGATGACACCAGCCAAATCGTCGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CCA 90 bp TTTCACCTTTGGTTCATCTCTTCGCACACCCATGCGGCCTCTCCTTaGTCTTCGTATTACTTTAGTGGTTCTGTAATCAGACTGGCTGTC +
Preference number: 5 (lower is better)
Translates to: FHLWFISSHTHAASP*SSYYFSGSVIRLAV
Trigger: GACAGCCAGTCTGATTACAGAACCACTAAAGTAATACGAAGACCAAGGAGAGGCCGCATGGGTGTGCGAAGAGATGAACCAAAGGTGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTGCGTTGAGTGTCCACTaGGGGGAGATGAACTGGCCA +
Preference number: 5 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLALSVH*GEMNWP
Trigger: TGGCCAGTTCATCTCCCCCAAGTGGACACTCAACGC...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTGCACCACTTTTCACGTaGGCTCTGCATGCTGCCACG +
Preference number: 5 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLAPLFT*ALHAAT
Trigger: CGTGGCAGCATGCAGAGCCAACGTGAAAAGTGGTGC...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS TCA 90 bp GTGTCATCTGTCGAATCTATGGAGCCATTGGATAGACGCTTTTCATaGACTTTCTGGCCTGCTTCCATTCCTTCAAGATGCTCTGACTCC +
Preference number: 5 (lower is better)
Translates to: VSSVESMEPLDRRFS*TFWPASIPSRCSDS
Trigger: GGAGTCAGAGCATCTTGAAGGAATGGAAGCAGGCCAGAAAGTTCATGAAAAGCGTCTATCCAATGGCTCCATAGATTCGACAGATGACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAAGCTTTGGGAACCCCGTaGGCTCATTGGGGTGTCCTC +
Preference number: 5 (lower is better)
Translates to: LVITDLSLANALLTVIFKALGTP*AHWGVL
Trigger: GAGGACACCCCAATGAGCCAACGGGGTTCCCAAAGC...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATGCTTTGGGAACCCCGTaGGCTCATTGGGGTGTCCTC +
Preference number: 5 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHALGTP*AHWGVL
Trigger: GAGGACACCCCAATGAGCCAACGGGGTTCCCAAAGC...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATGTCGGAGCCACTGCTTaGGGAACCCCGTTGGCTCAT +
Preference number: 5 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHVGATA*GTPLAH
Trigger: ATGAGCCAACGGGGTTCCCAAAGCAGTGGCTCCGAC...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATAGAGGGAGACTGGGCTaGCCGCTTGACCACCGTCAT +
Preference number: 5 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHRGRLG*PLDHRH
Trigger: ATGACGGTGGTCAAGCGGCAAGCCCAGTCTCCCTCT...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp CCTGGGAAGGAGCTGTTTTTCTTATGTTTCAATGAGGAAAGCCATCTCTCCTGCCATCAGAATGGCCACTaGGAGAGAGAAGATCCATTG +
Preference number: 5 (lower is better)
Translates to: PGKELFFLCFNEESHLSCHQNGH*EREDPL
Trigger: CAATGGATCTTCTCTCTCCAAGTGGCCATTCTGATG...GCAGGAGAGATGGCTTTCCTCATTGAAACATAAGAAAAACAGCTCCTTCCCAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTTGGGTCACCCACACATaGCCTGAAGGAGTACGCGAT +
Preference number: 5 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLWVTHT*PEGVRD
Trigger: ATCGCGTACTCCTTCAGGCAATGTGTGGGTGACCCA...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp CCTGGGAAGGAGCTGTTTTTCTTATGTTTCAATGAGGAAAGCCATCTCTCCTGCCCTGGGTGTTCTGTGTaGGAATCTGCAACAATAGAG +
Preference number: 5 (lower is better)
Translates to: PGKELFFLCFNEESHLSCPGCSV*ESATIE
Trigger: CTCTATTGTTGCAGATTCCAACACAGAACACCCAGG...GCAGGAGAGATGGCTTTCCTCATTGAAACATAAGAAAAACAGCTCCTTCCCAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp TCAGATCCCAAAGAAATATGGCTCAGGAGAGAGGCTTTACCTTACTGCAAGAGCAGGGCCAAGAGGTTGTaGTACTCACGTTCAAGAATC +
Preference number: 5 (lower is better)
Translates to: SDPKEIWLRREALPYCKSRAKRL*YSRSRI
Trigger: GATTCTTGAACGTGAGTACAACAACCTCTTGGCCCT...GCTCTTGCAGTAAGGTAAAGCCTCTCTCCTGAGCCATATTTCTTTGGGATCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp ACACCTGGGAAGGAGCTGTTTTTCTTATGTTTCAATGAGGAAAGCCATCTCTCCGTGCGAACAGTGGAGTaGTCTAACCTCTGCAGTCTT +
Preference number: 5 (lower is better)
Translates to: TPGKELFFLCFNEESHLSVRTVE*SNLCSL
Trigger: AAGACTGCAGAGGTTAGACAACTCCACTGTTCGCAC...GGAGAGATGGCTTTCCTCATTGAAACATAAGAAAAACAGCTCCTTCCCAGGTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp GACGAGACTGCTTTAGGTGACAGTGTGAGTGGTTTACCTAATTGGATATTGATTGAATCTTGGCTGCTATaGGCACTGCCAAGCCCAAGA +
Preference number: 5 (lower is better)
Translates to: DETALGDSVSGLPNWILIESWLL*ALPSPR
Trigger: TCTTGGGCTTGGCAGTGCCAATAGCAGCCAAGATTC...AATCAATATCCAATTAGGTAAACCACTCACACTGTCACCTAAAGCAGTCTCGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp GTATTTATTGAACCTCTGAGAGGTCTTGGAAGAGTTTCTCAATTCTTCAGCTTTGCACCACTTTTCACGTaGGCTCTGCATGCTGCCACG +
Preference number: 5 (lower is better)
Translates to: VFIEPLRGLGRVSQFFSFAPLFT*ALHAAT
Trigger: CGTGGCAGCATGCAGAGCCAACGTGAAAAGTGGTGC...AAAGCTGAAGAATTGAGAAACTCTTCCAAGACCTCTCAGAGGTTCAATAAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS CCA 90 bp CATAGTTTTGCTTCTCAAGCAATTCTTGCAGCTCGACGATTTGGCTaGTGTCATCTGTCGAATCTATGGAGCCATTGGATAGACGCTTTT +
Preference number: 5 (lower is better)
Translates to: HSFASQAILAARRFG*CHLSNLWSHWIDAF
Trigger: AAAAGCGTCTATCCAATGGCTCCATAGATTCGACAGATGACACCAGCCAAATCGTCGAGCTGCAAGAATTGCTTGAGAAGCAAAACTATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp CCTGGGAAGGAGCTGTTTTTCTTATGTTTCAATGAGGAAAGCCATCTCTCCTGCGTTCCAGTAACAGTCTaGTGTTGTTTCTTTCGGCTT +
Preference number: 5 (lower is better)
Translates to: PGKELFFLCFNEESHLSCVPVTV*CCFFRL
Trigger: AAGCCGAAAGAAACAACACAAGACTGTTACTGGAAC...GCAGGAGAGATGGCTTTCCTCATTGAAACATAAGAAAAACAGCTCCTTCCCAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAAGACTGGGCTTGCCGCTaGACCACCGTCATTCTTAGT +
Preference number: 5 (lower is better)
Translates to: LVITDLSLANALLTVIFKDWACR*TTVILS
Trigger: ACTAAGAATGACGGTGGTCAAGCGGCAAGCCCAGTC...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTTTTGTGGAGAGAATCTaGGCTGCTATTGGCACTGCC +
Preference number: 5 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLFVERI*AAIGTA
Trigger: GGCAGTGCCAATAGCAGCCAAGATTCTCTCCACAAA...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp GTATTTATTGAACCTCTGAGAGGTCTTGGAAGAGTTTCTCAATTCTTCAGCTTTTGGGTCACCCACACATaGCCTGAAGGAGTACGCGAT +
Preference number: 5 (lower is better)
Translates to: VFIEPLRGLGRVSQFFSFWVTHT*PEGVRD
Trigger: ATCGCGTACTCCTTCAGGCAATGTGTGGGTGACCCA...AAAGCTGAAGAATTGAGAAACTCTTCCAAGACCTCTCAGAGGTTCAATAAATAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp CCTGGGAAGGAGCTGTTTTTCTTATGTTTCAATGAGGAAAGCCATCTCTCCTGCCCACTCTCAAGAATGTaGTTTGCATATTCCCGAAGT +
Preference number: 5 (lower is better)
Translates to: PGKELFFLCFNEESHLSCPLSRM*FAYSRS
Trigger: ACTTCGGGAATATGCAAACAACATTCTTGAGAGTGG...GCAGGAGAGATGGCTTTCCTCATTGAAACATAAGAAAAACAGCTCCTTCCCAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTCTAACCTCTGCAGTCTaGATGAAGCAACGTCTGTCG +
Preference number: 5 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLLTSAV*MKQRLS
Trigger: CGACAGACGTTGCTTCATCAAGACTGCAGAGGTTAG...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CCA 90 bp GAACTTTCTGGCCTGCTTCCATTCCTTCAAGATGCTCTGACTCCGTaGACCCCTCACTTGATACCATTTTCCTTTGAATATGAACATTTT +
Preference number: 5 (lower is better)
Translates to: ELSGLLPFLQDALTP*TPHLIPFSFEYEHF
Trigger: AAAATGTTCATATTCAAAGGAAAATGGTATCAAGTGAGGGGTCCACGGAGTCAGAGCATCTTGAAGGAATGGAAGCAGGCCAGAAAGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp CACCCCTTCTATGTTACTAGTTACTGGGTAAGGAGAGGCATGTATCTGGTAGAGCCTTTGTCTAGCTCTTaGAAGTTCTTGATTCTTCTC +
Preference number: 5 (lower is better)
Translates to: HPFYVTSYWVRRGMYLVEPLSSS*KFLILL
Trigger: GAGAAGAATCAAGAACTTCAAAGAGCTAGACAAAGG...CTCTACCAGATACATGCCTCTCCTTACCCAGTAACTAGTAACATAGAAGGGGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTCAAGGGATTTCACCTTaGGTTCATCTCTTCGCACAC +
Preference number: 5 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLQGISP*VHLFAH
Trigger: GTGTGCGAAGAGATGAACCAAAGGTGAAATCCCTTG...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTCATCAGAATGGCCACTaGGAGAGAGAAGATCCATTG +
Preference number: 5 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLHQNGH*EREDPL
Trigger: CAATGGATCTTCTCTCTCCAAGTGGCCATTCTGATG...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAAGAATCTTGGCTGCTATaGGCACTGCCAAGCCCAAGA +
Preference number: 5 (lower is better)
Translates to: LVITDLSLANALLTVIFKESWLL*ALPSPR
Trigger: TCTTGGGCTTGGCAGTGCCAATAGCAGCCAAGATTC...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACAAAGCGGTGCAGAGGGTaGCTGATTCCAATCTCCCTT +
Preference number: 5 (lower is better)
Translates to: NNNLLMTGLALRPSSRETKRCRG*LIPISL
Trigger: AAGGGAGATTGGAATCAGCAACCCTCTGCACCGCTT...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAACCCAGGGCCAAGAGGTaGTTGTACTCACGTTCAAGA +
Preference number: 5 (lower is better)
Translates to: LVITDLSLANALLTVIFKPRAKR*LYSRSR
Trigger: TCTTGAACGTGAGTACAACAACCTCTTGGCCCTGGG...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATCCCAGGGCCAAGAGGTaGTTGTACTCACGTTCAAGA +
Preference number: 5 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHPRAKR*LYSRSR
Trigger: TCTTGAACGTGAGTACAACAACCTCTTGGCCCTGGG...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp ACTGCTTTAGGTGACAGTGTGAGTGGTTTACCTAATTGGATATTGATTATTCCCCTAACCTCTGCAGTCTaGATGAAGCAACGTCTGTCG +
Preference number: 5 (lower is better)
Translates to: TALGDSVSGLPNWILIIPLTSAV*MKQRLS
Trigger: CGACAGACGTTGCTTCATCAAGACTGCAGAGGTTAG...GGGAATAATCAATATCCAATTAGGTAAACCACTCACACTGTCACCTAAAGCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACAGCCTCTCTTCAGCCTTaGTTAGGGCTGCAATTCTCT +
Preference number: 5 (lower is better)
Translates to: NNNLLMTGLALRPSSRETASLQP*LGLQFS
Trigger: AGAGAATTGCAGCCCTAACAAAGGCTGAAGAGAGGC...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATGCCTCTCTTCAGCCTTaGTTAGGGCTGCAATTCTCT +
Preference number: 5 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHASLQP*LGLQFS
Trigger: AGAGAATTGCAGCCCTAACAAAGGCTGAAGAGAGGC...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp TTACTGCAAGAGCCTCTTGTTTTCAAGAGAACCCCAAACATTTACTTGTATTGCATTCTTCTCTTCAAGTaGGCCCTCGAGGTGTCTCAT +
Preference number: 5 (lower is better)
Translates to: LLQEPLVFKRTPNIYLYCILLFK*ALEVSH
Trigger: ATGAGACACCTCGAGGGCCAACTTGAAGAGAAGAAT...GCAATACAAGTAAATGTTTGGGGTTCTCTTGAAAACAAGAGGCTCTTGCAGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp TTACTGCAAGAGCCTCTTGTTTTCAAGAGAACCCCAAACATTTACTTGTATTGCCAAGGGATTTCACCTTaGGTTCATCTCTTCGCACAC +
Preference number: 5 (lower is better)
Translates to: LLQEPLVFKRTPNIYLYCQGISP*VHLFAH
Trigger: GTGTGCGAAGAGATGAACCAAAGGTGAAATCCCTTG...GCAATACAAGTAAATGTTTGGGGTTCTCTTGAAAACAAGAGGCTCTTGCAGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAATTTGTGGAGAGAATCTaGGCTGCTATTGGCACTGCC +
Preference number: 5 (lower is better)
Translates to: LVITDLSLANALLTVIFKFVERI*AAIGTA
Trigger: GGCAGTGCCAATAGCAGCCAAGATTCTCTCCACAAA...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTGGTGGTCTAACATTCTaGCATCAACCAAGCATTCCA +
Preference number: 5 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLGGLTF*HQPSIP
Trigger: TGGAATGCTTGGTTGATGCAAGAATGTTAGACCACC...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACAGTTCAAGAATCTGCCTaGCCTGGGTGTTCTGTGTTG +
Preference number: 5 (lower is better)
Translates to: NNNLLMTGLALRPSSRETVQESA*PGCSVL
Trigger: CAACACAGAACACCCAGGCAAGGCAGATTCTTGAAC...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAAGTTCAAGAATCTGCCTaGCCTGGGTGTTCTGTGTTG +
Preference number: 5 (lower is better)
Translates to: LVITDLSLANALLTVIFKVQESA*PGCSVL
Trigger: CAACACAGAACACCCAGGCAAGGCAGATTCTTGAAC...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAAGTGCGAACAGTGGAGTaGTCTAACCTCTGCAGTCTT +
Preference number: 5 (lower is better)
Translates to: LVITDLSLANALLTVIFKVRTVE*SNLCSL
Trigger: AAGACTGCAGAGGTTAGACAACTCCACTGTTCGCAC...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTAGTAACAGTCTTGTGTaGTTTCTTTCGGCTTTCAGC +
Preference number: 5 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLSNSLV*FLSAFS
Trigger: GCTGAAAGCCGAAAGAAACAACACAAGACTGTTACT...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTGTTCCAGTAACAGTCTaGTGTTGTTTCTTTCGGCTT +
Preference number: 5 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLVPVTV*CCFFRL
Trigger: AAGCCGAAAGAAACAACACAAGACTGTTACTGGAAC...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATATTCTTCTCTTCAAGTaGGCCCTCGAGGTGTCTCAT +
Preference number: 5 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHILLFK*ALEVSH
Trigger: ATGAGACACCTCGAGGGCCAACTTGAAGAGAAGAAT...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTCCACTCTCAAGAATGTaGTTTGCATATTCCCGAAGT +
Preference number: 5 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLPLSRM*FAYSRS
Trigger: ACTTCGGGAATATGCAAACAACATTCTTGAGAGTGG...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACACCTGGGTGTTCTGTGTaGGAATCTGCAACAATAGAG +
Preference number: 5 (lower is better)
Translates to: NNNLLMTGLALRPSSRETPGCSV*ESATIE
Trigger: CTCTATTGTTGCAGATTCCAACACAGAACACCCAGG...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACAAGGGCCAAGAGGTTGTaGTACTCACGTTCAAGAATC +
Preference number: 5 (lower is better)
Translates to: NNNLLMTGLALRPSSRETRAKRL*YSRSRI
Trigger: GATTCTTGAACGTGAGTACAACAACCTCTTGGCCCT...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATCATATTGACCATGAGTaGCTCAAAATGGGAGTCCGA +
Preference number: 5 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHHIDHE*LKMGVR
Trigger: TCGGACTCCCATTTTGAGCAACTCATGGTCAATATG...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTGGCCATTTCATAGTTTaGCTTCTCAAGCAATTCTTG +
Preference number: 5 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLGHFIV*LLKQFL
Trigger: CAAGAATTGCTTGAGAAGCAAAACTATGAAATGGCC...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTCCTTTGTCTAGCTCTTaGAAGTTCTTGATTCTTCTC +
Preference number: 5 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLPLSSS*KFLILL
Trigger: GAGAAGAATCAAGAACTTCAAAGAGCTAGACAAAGG...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACAAGTAACAGTCTTGTGTaGTTTCTTTCGGCTTTCAGC +
Preference number: 5 (lower is better)
Translates to: NNNLLMTGLALRPSSRETSNSLV*FLSAFS
Trigger: GCTGAAAGCCGAAAGAAACAACACAAGACTGTTACT...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AGGTTTAATCACATGATCAGAGGCAGGTGTTCAGCTTTAAGGTTTGACAGACTTTGTTCTCATTTTCATTaGATCAAGTTCAGACCTCAG +
Preference number: 5 (lower is better)
Translates to: RFNHMIRGRCSALRFDRLCSHFH*IKFRPQ
Trigger: CTGAGGTCTGAACTTGATCAAATGAAAATGAGAACA...AAGTCTGTCAAACCTTAAAGCTGAACACCTGCCTCTGATCATGTGATTAAACCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp GACGAGACTGCTTTAGGTGACAGTGTGAGTGGTTTACCTAATTGGATATTGATTATTGATTGCATCCAATaGTTCTTGAAGCATCATAGC +
Preference number: 5 (lower is better)
Translates to: DETALGDSVSGLPNWILIIDCIQ*FLKHHS
Trigger: GCTATGATGCTTCAAGAACAATTGGATGCAATCAAT...AATCAATATCCAATTAGGTAAACCACTCACACTGTCACCTAAAGCAGTCTCGTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp TTACTGCAAGAGCCTCTTGTTTTCAAGAGAACCCCAAACATTTACTTGTATTGCCAGATTCTTTCGTTTTaGCTGGAGCTGTCAGATTTT +
Preference number: 5 (lower is better)
Translates to: LLQEPLVFKRTPNIYLYCQILSF*LELSDF
Trigger: AAAATCTGACAGCTCCAGCAAAAACGAAAGAATCTG...GCAATACAAGTAAATGTTTGGGGTTCTCTTGAAAACAAGAGGCTCTTGCAGTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp TCTAGTGTATTGAGGAACGTGTCTTTGGTGTACAGTTTTACAAATTCATGTGCTGGCCATTTCATAGTTTaGCTTCTCAAGCAATTCTTG +
Preference number: 5 (lower is better)
Translates to: SSVLRNVSLVYSFTNSCAGHFIV*LLKQFL
Trigger: CAAGAATTGCTTGAGAAGCAAAACTATGAAATGGCC...AGCACATGAATTTGTAAAACTGTACACCAAAGACACGTTCCTCAATACACTAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATCAGATTCTTTCGTTTTaGCTGGAGCTGTCAGATTTT +
Preference number: 5 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHQILSF*LELSDF
Trigger: AAAATCTGACAGCTCCAGCAAAAACGAAAGAATCTG...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACACGAATAACTCGATCATaGCTCCACACTAAAACATCT +
Preference number: 5 (lower is better)
Translates to: NNNLLMTGLALRPSSRETRITRS*LHTKTS
Trigger: AGATGTTTTAGTGTGGAGCAATGATCGAGTTATTCG...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp GTATTTATTGAACCTCTGAGAGGTCTTGGAAGAGTTTCTCAATTCTTCAGCTTTCGAATAACTCGATCATaGCTCCACACTAAAACATCT +
Preference number: 5 (lower is better)
Translates to: VFIEPLRGLGRVSQFFSFRITRS*LHTKTS
Trigger: AGATGTTTTAGTGTGGAGCAATGATCGAGTTATTCG...AAAGCTGAAGAATTGAGAAACTCTTCCAAGACCTCTCAGAGGTTCAATAAATAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAATCTCAAGAATGTTGTTaGCATATTCCCGAAGTCCAA +
Preference number: 5 (lower is better)
Translates to: LVITDLSLANALLTVIFKSQECC*HIPEVQ
Trigger: TTGGACTTCGGGAATATGCAAACAACATTCTTGAGA...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp GTATTTATTGAACCTCTGAGAGGTCTTGGAAGAGTTTCTCAATTCTTCAGCTTTTCTCAAGAATGTTGTTaGCATATTCCCGAAGTCCAA +
Preference number: 5 (lower is better)
Translates to: VFIEPLRGLGRVSQFFSFSQECC*HIPEVQ
Trigger: TTGGACTTCGGGAATATGCAAACAACATTCTTGAGA...AAAGCTGAAGAATTGAGAAACTCTTCCAAGACCTCTCAGAGGTTCAATAAATAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS TCA 90 bp CTTGATATAGTGGGTTCAATTAGAGAACCTGTTCTCATTTTCATTTaGTCAAGTTCAGACCTCAGCTTCTCGATTTCTTCTGCTAATCTT +
Preference number: 5 (lower is better)
Translates to: LDIVGSIREPVLIFI*SSSDLSFSISSANL
Trigger: AAGATTAGCAGAAGAAATCGAGAAGCTGAGGTCTGAACTTGATCAAATGAAAATGAGAACAGGTTCTCTAATTGAACCCACTATATCAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AATAATAATTTACTAATGACGGGTCTTGCATTAAGACCAAGCAGCAGGGAAACATTGAATATGAACATTTaGCTCACGCAAGGCAACAAT +
Preference number: 5 (lower is better)
Translates to: NNNLLMTGLALRPSSRETLNMNI*LTQGNN
Trigger: ATTGTTGCCTTGCGTGAGCAAAATGTTCATATTCAA...TGTTTCCCTGCTGCTTGGTCTTAATGCAAGACCCGTCATTAGTAAATTATTATT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATATTCATTTTCTCCCTTaGTCTAGCTCTTTGAAGTTC +
Preference number: 5 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHIHFLP*SSSLKF
Trigger: GAACTTCAAAGAGCTAGACAAAGGGAGAAAATGAAT...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAATGTTCTCATTTTCATTaGATCAAGTTCAGACCTCAG +
Preference number: 5 (lower is better)
Translates to: LVITDLSLANALLTVIFKCSHFH*IKFRPQ
Trigger: CTGAGGTCTGAACTTGATCAAATGAAAATGAGAACA...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp CTCGTAATAACAGACTTGAGTCTGGCTAATGCCCTGTTAACAGTGATTTTTAAAATTGATTGCATCCAATaGTTCTTGAAGCATCATAGC +
Preference number: 5 (lower is better)
Translates to: LVITDLSLANALLTVIFKIDCIQ*FLKHHS
Trigger: GCTATGATGCTTCAAGAACAATTGGATGCAATCAAT...TTTAAAAATCACTGTTAACAGGGCATTAGCCAGACTCAAGTCTGTTATTACGAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp AACCGTTACTTATATTATTCCCTTAGGATTCAGTCTTCACAAAGGCTTCTCCATTTATTTCATGTTGACTaGCTTCTCGTCTTCTCTCTA +
Preference number: 5 (lower is better)
Translates to: NRYLYYSLRIQSSQRLLHLFHVD*LLVFSL
Trigger: TAGAGAGAAGACGAGAAGCAAGTCAACATGAAATAA...ATGGAGAAGCCTTTGTGAAGACTGAATCCTAAGGGAATAATATAAGTAACGGTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS-3UTR CAA 90 bp TCTAGTGTATTGAGGAACGTGTCTTTGGTGTACAGTTTTACAAATTCATGTGCTTTATTTCATGTTGACTaGCTTCTCGTCTTCTCTCTA +
Preference number: 5 (lower is better)
Translates to: SSVLRNVSLVYSFTNSCALFHVD*LLVFSL
Trigger: TAGAGAGAAGACGAGAAGCAAGTCAACATGAAATAA...AGCACATGAATTTGTAAAACTGTACACCAAAGACACGTTCCTCAATACACTAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217854.2
CDS CCA 72 bp GAGTCCGAGTCGGAGCCACTGCTTTGGGAACCCCGTTaGCTCATTGGGGTGTCCTCGTTAATCGTGGGCATC +
Preference number: 6 (lower is better)
Translates to: ESESEPLLWEPR*LIGVSSLIVGI
Trigger: GATGCCCACGATTAACGAGGACACCCCAATGAGCCAACGGGGTTCCCAAAGCAGTGGCTCCGACTCGGACTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CCA 72 bp TTTCACGTTGGCTCTGCATGCTGCCACGTACCAAGCTaGCATTCCCAGCCAGAGCTCCAGCCACGCAACCAC +
Preference number: 6 (lower is better)
Translates to: FHVGSACCHVPS*HSQPELQPRNH
Trigger: GTGGTTGCGTGGCTGGAGCTCTGGCTGGGAATGCCAGCTTGGTACGTGGCAGCATGCAGAGCCAACGTGAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CAA 72 bp GGAGTCCGAGTCGGAGCCACTGCTTTGGGAACCCCGTaGGCTCATTGGGGTGTCCTCGTTAATCGTGGGCAT +
Preference number: 6 (lower is better)
Translates to: GVRVGATALGTP*AHWGVLVNRGH
Trigger: ATGCCCACGATTAACGAGGACACCCCAATGAGCCAACGGGGTTCCCAAAGCAGTGGCTCCGACTCGGACTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CCA 72 bp GTCGGAGCCACTGCTTTGGGAACCCCGTTGGCTCATTaGGGTGTCCTCGTTAATCGTGGGCATCACTTCACA +
Preference number: 6 (lower is better)
Translates to: VGATALGTPLAH*GVLVNRGHHFT
Trigger: TGTGAAGTGATGCCCACGATTAACGAGGACACCCCAATGAGCCAACGGGGTTCCCAAAGCAGTGGCTCCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CCA 72 bp GGAGGCGCTGAAGGGCTGGTGAGAGAAACCATCTCTTaGATAGCTAGCCTGAGCTTTAAGCGGTGCAGAGGG +
Preference number: 6 (lower is better)
Translates to: GGAEGLVRETIS*IASLSFKRCRG
Trigger: CCCTCTGCACCGCTTAAAGCTCAGGCTAGCTATCCAAGAGATGGTTTCTCTCACCAGCCCTTCAGCGCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CCA 72 bp AGAACCTCCACTTCACTGGACACTCCAGAGGGAGACTaGGCTTGCCGCTTGACCACCGTCATTCTTAGTGAC +
Preference number: 6 (lower is better)
Translates to: RTSTSLDTPEGD*ACRLTTVILSD
Trigger: GTCACTAAGAATGACGGTGGTCAAGCGGCAAGCCCAGTCTCCCTCTGGAGTGTCCAGTGAAGTGGAGGTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CAA 72 bp TCCAGTCTCCGCTCAGTTCCCAGGGCCAAGAGGTTGTaGTACTCACGTTCAAGAATCTGCCTTGCCTGGGTG +
Preference number: 6 (lower is better)
Translates to: SSLRSVPRAKRL*YSRSRICLAWV
Trigger: CACCCAGGCAAGGCAGATTCTTGAACGTGAGTACAACAACCTCTTGGCCCTGGGAACTGAGCGGAGACTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS TCA 72 bp CATTGTGGTAGGAAGATGGTAAGGTGTGAGTCATTCTaGCGGCTCTGGGTGTTGGGGGAGGAGAAGTCTCGC +
Preference number: 6 (lower is better)
Translates to: HCGRKMVRCESF*RLWVLGEEKSR
Trigger: GCGAGACTTCTCCTCCCCCAACACCCAGAGCCGTCAGAATGACTCACACCTTACCATCTTCCTACCACAATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS TCA 72 bp GAGGAGGGAACTGCCTTCGCCAGGTTGATCCCCGTCTaGAATTCTTGTCGTCACTTTCATCCAGTCTCCGCT +
Preference number: 6 (lower is better)
Translates to: EEGTAFARLIPV*NSCRHFHPVSA
Trigger: AGCGGAGACTGGATGAAAGTGACGACAAGAATTTCAGACGGGGATCAACCTGGCGAAGGCAGTTCCCTCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CAA 72 bp TCATCCAGTCTCCGCTCAGTTCCCAGGGCCAAGAGGTaGTTGTACTCACGTTCAAGAATCTGCCTTGCCTGG +
Preference number: 6 (lower is better)
Translates to: SSSLRSVPRAKR*LYSRSRICLAW
Trigger: CCAGGCAAGGCAGATTCTTGAACGTGAGTACAACAACCTCTTGGCCCTGGGAACTGAGCGGAGACTGGATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CAA 72 bp AACTGCCTTCGCCAGGTTGATCCCCGTCTGAAATTCTaGTCGTCACTTTCATCCAGTCTCCGCTCAGTTCCC +
Preference number: 6 (lower is better)
Translates to: NCLRQVDPRLKF*SSLSSSLRSVP
Trigger: GGGAACTGAGCGGAGACTGGATGAAAGTGACGACAAGAATTTCAGACGGGGATCAACCTGGCGAAGGCAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CAA 90 bp TCGTCACTTTCATCCAGTCTCCGCTCAGTTCCCAGGGCCAAGAGGTaGTTGTACTCACGTTCAAGAATCTGCCTTGCCTGGGTGTTCTGT +
Preference number: 6 (lower is better)
Translates to: SSLSSSLRSVPRAKR*LYSRSRICLAWVFC
Trigger: ACAGAACACCCAGGCAAGGCAGATTCTTGAACGTGAGTACAACAACCTCTTGGCCCTGGGAACTGAGCGGAGACTGGATGAAAGTGACGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS TCA 72 bp CAGCTGGTAATGTTTCTGAGGACCCAGGCATCATGCTaGTTCCATGAACTTCACGAGGAGGGAACTGCCTTC +
Preference number: 6 (lower is better)
Translates to: QLVMFLRTQASC*FHELHEEGTAF
Trigger: GAAGGCAGTTCCCTCCTCGTGAAGTTCATGGAATCAGCATGATGCCTGGGTCCTCAGAAACATTACCAGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS TCA 72 bp TCATTTTCCTGGACTGCCCAGACGTTGTGGTCAACCTaGATCCAGCTGGTAATGTTTCTGAGGACCCAGGCA +
Preference number: 6 (lower is better)
Translates to: SFSWTAQTLWST*IQLVMFLRTQA
Trigger: TGCCTGGGTCCTCAGAAACATTACCAGCTGGATTCAGGTTGACCACAACGTCTGGGCAGTCCAGGAAAATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS GCA 72 bp TCAGCCTTCTGTCCTTTTCAGCTTGAGTTCCAAGTTTaGCTAAGCCCAGGGATTCCTGTGCTGCAGCTTCTG +
Preference number: 6 (lower is better)
Translates to: SAFCPFQLEFQV*LSPGIPVLQLL
Trigger: CAGAAGCTGCAGCACAGGAATCCCTGGGCTTAGGCAAACTTGGAACTCAAGCTGAAAAGGACAGAAGGCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS GCA 72 bp CTTGATGAAGCAACGTCTGTCGTCATTTTCCTGGACTaGCCAGACGTTGTGGTCAACCTGAATCCAGCTGGT +
Preference number: 6 (lower is better)
Translates to: LDEATSVVIFLD*PDVVVNLNPAG
Trigger: ACCAGCTGGATTCAGGTTGACCACAACGTCTGGGCAGTCCAGGAAAATGACGACAGACGTTGCTTCATCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CCA 72 bp CTTTCATCCAGCATATTGACCATGAGTTGCTCAAAATaGGAGTCCGAGTCGGAGCCACTGCTTTGGGAACCC +
Preference number: 6 (lower is better)
Translates to: LSSSILTMSCSK*ESESEPLLWEP
Trigger: GGGTTCCCAAAGCAGTGGCTCCGACTCGGACTCCCATTTTGAGCAACTCATGGTCAATATGCTGGATGAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CCA 72 bp GAAGCTGTAACAGAGGCAGTGATGGAGGTACCTGGATaGACCCTCGCCAAATTCAGCCCTTCTAAGCTTACA +
Preference number: 6 (lower is better)
Translates to: EAVTEAVMEVPG*TLAKFSPSKLT
Trigger: TGTAAGCTTAGAAGGGCTGAATTTGGCGAGGGTCCATCCAGGTACCTCCATCACTGCCTCTGTTACAGCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CAA 90 bp TTTGCTGAGTTCTGTTCCACTCATGATCTCCAAGGGATTTCACCTTaGGTTCATCTCTTCGCACACCCATGCGGCCTCTCCTTGGTCTTC +
Preference number: 6 (lower is better)
Translates to: FAEFCSTHDLQGISP*VHLFAHPCGLSLVF
Trigger: GAAGACCAAGGAGAGGCCGCATGGGTGTGCGAAGAGATGAACCAAAGGTGAAATCCCTTGGAGATCATGAGTGGAACAGAACTCAGCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS GCA 72 bp AAGTTGTTCACGGCAAGCATTCAACTCTTTAGTCAGTaGAGCAAACTCCGGTGGATCAGCCCCCTTAGAACC +
Preference number: 6 (lower is better)
Translates to: KLFTASIQLFSQ*SKLRWISPLRT
Trigger: GGTTCTAAGGGGGCTGATCCACCGGAGTTTGCTGCACTGACTAAAGAGTTGAATGCTTGCCGTGAACAACTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CAA 72 bp CACGTTCAAGAATCTGCCTTGCCTGGGTGTTCTGTGTaGGAATCTGCAACAATAGAGCCAAGCTGCTGTAGT +
Preference number: 6 (lower is better)
Translates to: HVQESALPGCSV*ESATIEPSCCS
Trigger: ACTACAGCAGCTTGGCTCTATTGTTGCAGATTCCAACACAGAACACCCAGGCAAGGCAGATTCTTGAACGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS TCA 72 bp TCTGTAATCAGACTGGCTGTCTACAAGGGACCCAACTaGATACCGCAACTCAGTGGAGGTGTCTATATGAGT +
Preference number: 6 (lower is better)
Translates to: SVIRLAVYKGPN*IPQLSGGVYMS
Trigger: ACTCATATAGACACCTCCACTGAGTTGCGGTATTCAGTTGGGTCCCTTGTAGACAGCCAGTCTGATTACAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS GCA 72 bp CCCTCGAGGTGTCTCATACGTTCTTCAATATTTCCATaGCTCTCTTCAGCCTTTGTTAGGGCTGCAATTCTC +
Preference number: 6 (lower is better)
Translates to: PSRCLIRSSIFP*LSSAFVRAAIL
Trigger: GAGAATTGCAGCCCTAACAAAGGCTGAAGAGAGGCATGGAAATATTGAAGAACGTATGAGACACCTCGAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CCA 72 bp GGCCTGCTTCCATTCCTTCAAGATGCTCTGACTCCGTaGACCCCTCACTTGATACCATTTTCCTTTGAATAT +
Preference number: 6 (lower is better)
Translates to: GLLPFLQDALTP*TPHLIPFSFEY
Trigger: ATATTCAAAGGAAAATGGTATCAAGTGAGGGGTCCACGGAGTCAGAGCATCTTGAAGGAATGGAAGCAGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CCA 72 bp GCTTCTCAAGCAATTCTTGCAGCTCGACGATTTGGCTaGTGTCATCTGTCGAATCTATGGAGCCATTGGATA +
Preference number: 6 (lower is better)
Translates to: ASQAILAARRFG*CHLSNLWSHWI
Trigger: TATCCAATGGCTCCATAGATTCGACAGATGACACCAGCCAAATCGTCGAGCTGCAAGAATTGCTTGAGAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CAA 72 bp ATGTGCGAACAGTGGAGTTGTCTAACCTCTGCAGTCTaGATGAAGCAACGTCTGTCGTCATTTTCCTGGACT +
Preference number: 6 (lower is better)
Translates to: MCEQWSCLTSAV*MKQRLSSFSWT
Trigger: AGTCCAGGAAAATGACGACAGACGTTGCTTCATCAAGACTGCAGAGGTTAGACAACTCCACTGTTCGCACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS TCA 72 bp GTCGAATCTATGGAGCCATTGGATAGACGCTTTTCATaGACTTTCTGGCCTGCTTCCATTCCTTCAAGATGC +
Preference number: 6 (lower is better)
Translates to: VESMEPLDRRFS*TFWPASIPSRC
Trigger: GCATCTTGAAGGAATGGAAGCAGGCCAGAAAGTTCATGAAAAGCGTCTATCCAATGGCTCCATAGATTCGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS GCA 72 bp CATGAGTATGTGCGAACAGTGGAGTTGTCTAACCTCTaGAGTCTTGATGAAGCAACGTCTGTCGTCATTTTC +
Preference number: 6 (lower is better)
Translates to: HEYVRTVELSNL*SLDEATSVVIF
Trigger: GAAAATGACGACAGACGTTGCTTCATCAAGACTGCAGAGGTTAGACAACTCCACTGTTCGCACATACTCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CCA 72 bp TTTGGCTGGTGTCATCTGTCGAATCTATGGAGCCATTaGATAGACGCTTTTCATGAACTTTCTGGCCTGCTT +
Preference number: 6 (lower is better)
Translates to: FGWCHLSNLWSH*IDAFHELSGLL
Trigger: AAGCAGGCCAGAAAGTTCATGAAAAGCGTCTATCCAATGGCTCCATAGATTCGACAGATGACACCAGCCAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CCA 72 bp TTTTGCTTCTCAAGCAATTCTTGCAGCTCGACGATTTaGCTGGTGTCATCTGTCGAATCTATGGAGCCATTG +
Preference number: 6 (lower is better)
Translates to: FCFSSNSCSSTI*LVSSVESMEPL
Trigger: CAATGGCTCCATAGATTCGACAGATGACACCAGCCAAATCGTCGAGCTGCAAGAATTGCTTGAGAAGCAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CAA 72 bp GTTTTGCTTCTCAAGCAATTCTTGCAGCTCGACGATTaGGCTGGTGTCATCTGTCGAATCTATGGAGCCATT +
Preference number: 6 (lower is better)
Translates to: VLLLKQFLQLDD*AGVICRIYGAI
Trigger: AATGGCTCCATAGATTCGACAGATGACACCAGCCAAATCGTCGAGCTGCAAGAATTGCTTGAGAAGCAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2
CDS CAA 90 bp TTCTTTCATTTGGGCCATTTCATAGTTTTGCTTCTCAAGCAATTCTaGCAGCTCGACGATTTGGCTGGTGTCATCTGTCGAATCTATGGA +
Preference number: 6 (lower is better)
Translates to: FFHLGHFIVLLLKQF*QLDDLAGVICRIYG
Trigger: TCCATAGATTCGACAGATGACACCAGCCAAATCGTCGAGCTGCAAGAATTGCTTGAGAAGCAAAACTATGAAATGGCCCAAATGAAAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029404.17
ENSMUST00000217854.2