Pregenerated sensors for PPDPF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000016344Ensembl transcript IDs: ENSMUST00000016488.13, ENSMUST00000108841.2
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAGTTCAGTGCTGTGAACCAAGAGGGGGCTCTCTCCAGCTTCTACTaGTTTCTCTTGTTCAGCCTTCCTAGTTTACAGGGAGGGTCGAGA | + |
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Preference number: 1 (lower is better) Translates to: KFSAVNQEGALSSFY*FLLFSLPSLQGGSR Trigger: TCTCGACCCTCCCTGTAAACTAGGAAGGCTGAACAAGAGAAACCAGTAGAAGCTGGAGAGAGCCCCCTCTTGGTTCACAGCACTGAACTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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| 3UTR-3UTR CCA 90 bp | AGAGCTCCCAAACTCAGCCAGAGGCCCAGCTTCCCCTGGACTGTCTACCTGGGGATGCAGGGGTATCACTaGGAAGGGTCTCAAGGAGCT | + |
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Preference number: 2 (lower is better) Translates to: RAPKLSQRPSFPWTVYLGMQGYH*EGSQGA Trigger: AGCTCCTTGAGACCCTTCCCAGTGATACCCCTGCAT...CCCCAGGTAGACAGTCCAGGGGAAGCTGGGCCTCTGGCTGAGTTTGGGAGCTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000016488.13 |
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| 3UTR-3UTR GCA 90 bp | TCCCCTGGACTGTCTACCTGGGGCCAGGCCCACTTGAGAGGGTATCTCACCAGACCAGGGGAGGGTGGCTaGTGTGAGTTTATTTTCTGC | + |
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Preference number: 2 (lower is better) Translates to: SPGLSTWGQAHLRGYLTRPGEGG*CEFIFC Trigger: GCAGAAAATAAACTCACAGCAGCCACCCTCCCCTGG...TCTGGTGAGATACCCTCTCAAGTGGGCCTGGCCCCAGGTAGACAGTCCAGGGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000016488.13 |
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| 3UTR-3UTR GCA 90 bp | AAGGCTGGATTCAGTAATGTTTCAAACATACCAGGGGAGGGTGGCTGCTGTGAGGTCAGGAAAGTTCAGTaGTGTGAACCAAGAGGGGGC | + |
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Preference number: 2 (lower is better) Translates to: KAGFSNVSNIPGEGGCCEVRKVQ*CEPRGG Trigger: GCCCCCTCTTGGTTCACAGCACTGAACTTTCCTGAC...CTCACAGCAGCCACCCTCCCCTGGTATGTTTGAAACATTACTGAATCCAGCCTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000016488.13 |
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| 3UTR-3UTR CCA 90 bp | TTCTGCTTTGTGCCAAGACACAGTTATGGGGTCAGGAAAGTTCAGTGCTGTGAACTCTCCAGCTTCTACTaGTTTCTCTTGTTCAGCCTT | + |
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Preference number: 2 (lower is better) Translates to: FCFVPRHSYGVRKVQCCELSSFY*FLLFSL Trigger: AAGGCTGAACAAGAGAAACCAGTAGAAGCTGGAGAG...TTCACAGCACTGAACTTTCCTGACCCCATAACTGTGTCTTGGCACAAAGCAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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| 3UTR-3UTR CCA 90 bp | TTATTTTCTGCTTTGTGCCAAGACACAGTTATGGGGTCAGGAAAGTTCAGTGCTCTCTCCAGCTTCTACTaGTTTCTCTTGTTCAGCCTT | + |
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Preference number: 2 (lower is better) Translates to: LFSALCQDTVMGSGKFSALSSFY*FLLFSL Trigger: AAGGCTGAACAAGAGAAACCAGTAGAAGCTGGAGAG...AGCACTGAACTTTCCTGACCCCATAACTGTGTCTTGGCACAAAGCAGAAAATAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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| 3UTR CCA 72 bp | AGAGCTCCCAAACTCAGCCAGAGGCCCAGCTTCCCCTaGACTGTCTACCTGGGGCCAGGCCCACTTGAGAGG | + |
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Preference number: 3 (lower is better) Translates to: RAPKLSQRPSFP*TVYLGPGPLER Trigger: CCTCTCAAGTGGGCCTGGCCCCAGGTAGACAGTCCAGGGGAAGCTGGGCCTCTGGCTGAGTTTGGGAGCTCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016488.13 |
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| 3UTR CCA 72 bp | TCAGCCAGAGGCCCAGCTTCCCCTGGACTGTCTACCTaGGGCCAGGCCCACTTGAGAGGGTATCTCACCAGA | + |
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Preference number: 3 (lower is better) Translates to: SARGPASPGLST*GQAHLRGYLTR Trigger: TCTGGTGAGATACCCTCTCAAGTGGGCCTGGCCCCAGGTAGACAGTCCAGGGGAAGCTGGGCCTCTGGCTGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016488.13 |
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| 3UTR TCA 72 bp | GACCCAAGATCACCCACCAGGTTCCTGTGTAGGAACTaGGAGCTCCCAAACTCAGCCAGAGGCCCAGCTTCC | + |
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Preference number: 3 (lower is better) Translates to: DPRSPTRFLCRN*ELPNSARGPAS Trigger: GGAAGCTGGGCCTCTGGCTGAGTTTGGGAGCTCTCAGTTCCTACACAGGAACCTGGTGGGTGATCTTGGGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016488.13 |
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| 3UTR CCA 72 bp | TTCCTAGTTTACAGGGAGGGTCGAGAGGGTAGGCACTaGCCTAGCACCACTTCAGCTTGGGCAGGCTGCAGA | + |
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Preference number: 3 (lower is better) Translates to: FLVYREGREGRH*PSTTSAWAGCR Trigger: TCTGCAGCCTGCCCAAGCTGAAGTGGTGCTAGGCCAGTGCCTACCCTCTCGACCCTCCCTGTAAACTAGGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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| 3UTR CCA 72 bp | CACTGGGAAGGGTCTCAAGGAGCTGTCAGGAAAGCCTaGGAGCAGTATAGCATCCAGCAGGAAGCAAGGCTG | + |
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Preference number: 3 (lower is better) Translates to: HWEGSQGAVRKA*EQYSIQQEARL Trigger: CAGCCTTGCTTCCTGCTGGATGCTATACTGCTCCCAGGCTTTCCTGACAGCTCCTTGAGACCCTTCCCAGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000016488.13 |
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| 3UTR CCA 72 bp | GCTGTGAACCAAGAGGGGGCTCTCTCCAGCTTCTACTaGTTTCTCTTGTTCAGCCTTCCTAGTTTACAGGGA | + |
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Preference number: 3 (lower is better) Translates to: AVNQEGALSSFY*FLLFSLPSLQG Trigger: TCCCTGTAAACTAGGAAGGCTGAACAAGAGAAACCAGTAGAAGCTGGAGAGAGCCCCCTCTTGGTTCACAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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| 3UTR-3UTR CAA 90 bp | TTTTCTGCTTTGTGCCAAGACACAGTTATGGGGTCAGGAAAGTTCAGTGCTGTGTTCTACTGGTTTCTCTaGTTCAGCCTTCCTAGTTTA | + |
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Preference number: 3 (lower is better) Translates to: FSALCQDTVMGSGKFSAVFYWFL*FSLPSL Trigger: TAAACTAGGAAGGCTGAACAAGAGAAACCAGTAGAA...CACAGCACTGAACTTTCCTGACCCCATAACTGTGTCTTGGCACAAAGCAGAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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| 3UTR-3UTR CAA 90 bp | TTATTTTCTGCTTTGTGCCAAGACACAGTTATGGGGTCAGGAAAGTTCAGTGCTTTCTACTGGTTTCTCTaGTTCAGCCTTCCTAGTTTA | + |
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Preference number: 3 (lower is better) Translates to: LFSALCQDTVMGSGKFSAFYWFL*FSLPSL Trigger: TAAACTAGGAAGGCTGAACAAGAGAAACCAGTAGAA...AGCACTGAACTTTCCTGACCCCATAACTGTGTCTTGGCACAAAGCAGAAAATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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| CDS-3UTR CCA 90 bp | GGACTGTCTACCTGGGGCCAGGCCCACTTGAGAGGGTATCTCACCAGATGCAGGGGGCTTCTGGAGACCTaGGGGGATTCTGCCGAGCGC | + |
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Preference number: 4 (lower is better) Translates to: GLSTWGQAHLRGYLTRCRGLLET*GDSAER Trigger: GCGCTCGGCAGAATCCCCCCAGGTCTCCAGAAGCCC...CCTGCATCTGGTGAGATACCCTCTCAAGTGGGCCTGGCCCCAGGTAGACAGTCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000016488.13 |
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| CDS-3UTR TCA 90 bp | AGCTCCCAAACTCAGCCAGAGGCCCAGCTTCCCCTGGACTGTCTACCTGGGGCCTCTGGCCAGAATGGATaGCTGGCTGCTGCTTCATGG | + |
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Preference number: 4 (lower is better) Translates to: SSQTQPEAQLPLDCLPGASGQNG*LAAASW Trigger: CCATGAAGCAGCAGCCAGTCATCCATTCTGGCCAGA...GGCCCCAGGTAGACAGTCCAGGGGAAGCTGGGCCTCTGGCTGAGTTTGGGAGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016488.13 |
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| CDS-3UTR CCA 90 bp | CGAGAGGGTAGGCACTGGCCTAGCACCACTTCAGCTTGGGCAGGCTGCAGATTCCTGGCTGCTGCTTCATaGTTTCAGGAGTCAGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: REGRHWPSTTSAWAGCRFLAAAS*FQESGH Trigger: GTGGCCTGACTCCTGAAACCATGAAGCAGCAGCCAG...GAATCTGCAGCCTGCCCAAGCTGAAGTGGTGCTAGGCCAGTGCCTACCCTCTCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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| CDS-3UTR GCA 90 bp | AGAGCTCCCAAACTCAGCCAGAGGCCCAGCTTCCCCTGGACTGTCTACCTGGGGTGGATGACTGGCTGCTaGTTCATGGTTTCAGGAGTC | + |
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Preference number: 4 (lower is better) Translates to: RAPKLSQRPSFPWTVYLGWMTGC*FMVSGV Trigger: GACTCCTGAAACCATGAAGCAGCAGCCAGTCATCCA...CCCCAGGTAGACAGTCCAGGGGAAGCTGGGCCTCTGGCTGAGTTTGGGAGCTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016488.13 |
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| CDS-3UTR CCA 90 bp | CAAGAGGGGGCTCTCTCCAGCTTCTACTGGTTTCTCTTGTTCAGCCTTCCTAGTGGGCTTCTGGAGACCTaGGGGGATTCTGCCGAGCGC | + |
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Preference number: 4 (lower is better) Translates to: QEGALSSFYWFLLFSLPSGLLET*GDSAER Trigger: GCGCTCGGCAGAATCCCCCCAGGTCTCCAGAAGCCC...ACTAGGAAGGCTGAACAAGAGAAACCAGTAGAAGCTGGAGAGAGCCCCCTCTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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| CDS-3UTR CCA 90 bp | AAGGCTGGATTCAGTAATGTTTCAAACATACCAGGGGAGGGTGGCTGCTGTGAGTCCCTGGGGTTGGTCTaGCCAGAATGGATGACTGGC | + |
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Preference number: 4 (lower is better) Translates to: KAGFSNVSNIPGEGGCCESLGLV*PEWMTG Trigger: GCCAGTCATCCATTCTGGCCAGACCAACCCCAGGGA...CTCACAGCAGCCACCCTCCCCTGGTATGTTTGAAACATTACTGAATCCAGCCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000016488.13 |
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| 3UTR CAA 72 bp | CAAGAGGGGGCTCTCTCCAGCTTCTACTGGTTTCTCTaGTTCAGCCTTCCTAGTTTACAGGGAGGGTCGAGA | + |
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Preference number: 4 (lower is better) Translates to: QEGALSSFYWFL*FSLPSLQGGSR Trigger: TCTCGACCCTCCCTGTAAACTAGGAAGGCTGAACAAGAGAAACCAGTAGAAGCTGGAGAGAGCCCCCTCTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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| CDS-3UTR TCA 90 bp | TCCAGCTTCTACTGGTTTCTCTTGTTCAGCCTTCCTAGTTTACAGGGAGGGTCGTCTGGCCAGAATGGATaGCTGGCTGCTGCTTCATGG | + |
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Preference number: 4 (lower is better) Translates to: SSFYWFLLFSLPSLQGGSSGQNG*LAAASW Trigger: CCATGAAGCAGCAGCCAGTCATCCATTCTGGCCAGA...CGACCCTCCCTGTAAACTAGGAAGGCTGAACAAGAGAAACCAGTAGAAGCTGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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| CDS-3UTR GCA 90 bp | TCTACTGGTTTCTCTTGTTCAGCCTTCCTAGTTTACAGGGAGGGTCGAGAGGGTTGGATGACTGGCTGCTaGTTCATGGTTTCAGGAGTC | + |
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Preference number: 4 (lower is better) Translates to: STGFSCSAFLVYREGREGWMTGC*FMVSGV Trigger: GACTCCTGAAACCATGAAGCAGCAGCCAGTCATCCA...ACCCTCTCGACCCTCCCTGTAAACTAGGAAGGCTGAACAAGAGAAACCAGTAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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| CDS-3UTR CCA 90 bp | TTTTCTGCTTTGTGCCAAGACACAGTTATGGGGTCAGGAAAGTTCAGTGCTGTGCTGGCTGCTGCTTCATaGTTTCAGGAGTCAGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: FSALCQDTVMGSGKFSAVLAAAS*FQESGH Trigger: GTGGCCTGACTCCTGAAACCATGAAGCAGCAGCCAG...CACAGCACTGAACTTTCCTGACCCCATAACTGTGTCTTGGCACAAAGCAGAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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| CDS CCA 90 bp | ATGGTTTCAGGAGTCAGGCCACAGGTCATCGGGCTTCTGGAGACCTaGGGGGATTCTGCCGAGCGCTCAGGAGACTCCAACACTGTAGTC | + |
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Preference number: 5 (lower is better) Translates to: MVSGVRPQVIGLLET*GDSAERSGDSNTVV Trigger: GACTACAGTGTTGGAGTCTCCTGAGCGCTCGGCAGAATCCCCCCAGGTCTCCAGAAGCCCGATGACCTGTGGCCTGACTCCTGAAACCAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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| CDS GCA 90 bp | GAAAGGTCCCTGGGGTTGGTCTGGCCAGAATGGATGACTGGCTGCTaGTTCATGGTTTCAGGAGTCAGGCCACAGGTCATCGGGCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: ERSLGLVWPEWMTGC*FMVSGVRPQVIGLL Trigger: CAGAAGCCCGATGACCTGTGGCCTGACTCCTGAAACCATGAAGCAGCAGCCAGTCATCCATTCTGGCCAGACCAACCCCAGGGACCTTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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| CDS GCA 90 bp | CAGGAAAGGTCCCTGGGGTTGGTCTGGCCAGAATGGATGACTGGCTaGTGCTTCATGGTTTCAGGAGTCAGGCCACAGGTCATCGGGCTT | + |
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Preference number: 5 (lower is better) Translates to: QERSLGLVWPEWMTG*CFMVSGVRPQVIGL Trigger: AAGCCCGATGACCTGTGGCCTGACTCCTGAAACCATGAAGCAGCAGCCAGTCATCCATTCTGGCCAGACCAACCCCAGGGACCTTTCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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| CDS-3UTR CAA 90 bp | TCCAGCTTCTACTGGTTTCTCTTGTTCAGCCTTCCTAGTTTACAGGGAGGGTCGGAAAGGTCCCTGGGGTaGGTCTGGCCAGAATGGATG | + |
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Preference number: 5 (lower is better) Translates to: SSFYWFLLFSLPSLQGGSERSLG*VWPEWM Trigger: CATCCATTCTGGCCAGACCAACCCCAGGGACCTTTC...CGACCCTCCCTGTAAACTAGGAAGGCTGAACAAGAGAAACCAGTAGAAGCTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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| CDS-3UTR CAA 90 bp | TTCTGCTTTGTGCCAAGACACAGTTATGGGGTCAGGAAAGTTCAGTGCTGTGAAGAAAGGTCCCTGGGGTaGGTCTGGCCAGAATGGATG | + |
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Preference number: 5 (lower is better) Translates to: FCFVPRHSYGVRKVQCCEERSLG*VWPEWM Trigger: CATCCATTCTGGCCAGACCAACCCCAGGGACCTTTC...TTCACAGCACTGAACTTTCCTGACCCCATAACTGTGTCTTGGCACAAAGCAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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| CDS GCA 72 bp | CGTCCCCAGGGTACTCGGCACTTCCGCCGGAGCTGCTaGTGGACGAGGAGCCCAGGCGTCGCCGATAGTAGT | + |
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Preference number: 6 (lower is better) Translates to: RPQGTRHFRRSC*WTRSPGVADSS Trigger: ACTACTATCGGCGACGCCTGGGCTCCTCGTCCAGCAGCAGCTCCGGCGGAAGTGCCGAGTACCCTGGGGACG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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| CDS GCA 72 bp | TCCCTGGGGTTGGTCTGGCCAGAATGGATGACTGGCTaGTGCTTCATGGTTTCAGGAGTCAGGCCACAGGTC | + |
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Preference number: 6 (lower is better) Translates to: SLGLVWPEWMTG*CFMVSGVRPQV Trigger: GACCTGTGGCCTGACTCCTGAAACCATGAAGCAGCAGCCAGTCATCCATTCTGGCCAGACCAACCCCAGGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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| CDS GCA 72 bp | CTGGGGTTGGTCTGGCCAGAATGGATGACTGGCTGCTaGTTCATGGTTTCAGGAGTCAGGCCACAGGTCATC | + |
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Preference number: 6 (lower is better) Translates to: LGLVWPEWMTGC*FMVSGVRPQVI Trigger: GATGACCTGTGGCCTGACTCCTGAAACCATGAAGCAGCAGCCAGTCATCCATTCTGGCCAGACCAACCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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| CDS CCA 72 bp | AAGGTCCCTGGGGTTGGTCTGGCCAGAATGGATGACTaGCTGCTGCTTCATGGTTTCAGGAGTCAGGCCACA | + |
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Preference number: 6 (lower is better) Translates to: KVPGVGLARMDD*LLLHGFRSQAT Trigger: TGTGGCCTGACTCCTGAAACCATGAAGCAGCAGCCAGTCATCCATTCTGGCCAGACCAACCCCAGGGACCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000016488.13 ENSMUST00000108841.2 |
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