Pregenerated sensors for PPCS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028636Ensembl transcript IDs: ENSMUST00000030385.13, ENSMUST00000106316.2
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CACTTTCCAGATCCAGGAGAGCGTCCAGTGTTTCACTCTCAGAACTaGAGTCCCAGCAGGCACTTGCCTGCACACCGCGTTTACTATCTC | + |
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Preference number: 1 (lower is better) Translates to: HFPDPGERPVFHSQN*SPSRHLPAHRVYYL Trigger: GAGATAGTAAACGCGGTGTGCAGGCAAGTGCCTGCTGGGACTTCAGTTCTGAGAGTGAAACACTGGACGCTCTCCTGGATCTGGAAAGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030385.13 ENSMUST00000106316.2 |
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| 3UTR TCA 90 bp | TGGCTCATCTGCTCTGCAGGCCACGCAATCCCACAGTCCTCTTTGTaGACTCTTGTTCACTTTCCAGATCCAGGAGAGCGTCCAGTGTTT | + |
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Preference number: 1 (lower is better) Translates to: WLICSAGHAIPQSSL*TLVHFPDPGERPVF Trigger: AAACACTGGACGCTCTCCTGGATCTGGAAAGTGAACAAGAGTTCACAAAGAGGACTGTGGGATTGCGTGGCCTGCAGAGCAGATGAGCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030385.13 ENSMUST00000106316.2 |
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| 3UTR GCA 90 bp | TTTATTGCACATAAATTTTTGTACATCCAGTTCCCAAATGAGACGTaGTCATTCATCTTTCAGACCCTCACAGCTCACAAAGGCCCTGGC | + |
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Preference number: 1 (lower is better) Translates to: FIAHKFLYIQFPNET*SFIFQTLTAHKGPG Trigger: GCCAGGGCCTTTGTGAGCTGTGAGGGTCTGAAAGATGAATGAGCACGTCTCATTTGGGAACTGGATGTACAAAAATTTATGTGCAATAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030385.13 ENSMUST00000106316.2 |
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| 3UTR CAA 90 bp | TCTGCTCTGCAGGCCACGCAATCCCACAGTCCTCTTTGTGAACTCTaGTTCACTTTCCAGATCCAGGAGAGCGTCCAGTGTTTCACTCTC | + |
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Preference number: 2 (lower is better) Translates to: SALQATQSHSPLCEL*FTFQIQESVQCFTL Trigger: GAGAGTGAAACACTGGACGCTCTCCTGGATCTGGAAAGTGAACAAGAGTTCACAAAGAGGACTGTGGGATTGCGTGGCCTGCAGAGCAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030385.13 ENSMUST00000106316.2 |
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| 3UTR CAA 90 bp | TTCAGACCCTCACAGCTCACAAAGGCCCTGGCACATGGTAGGCACTaGATAAACACTTCTTCAGAGCATGACCATTCACGCACCATGACC | + |
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Preference number: 2 (lower is better) Translates to: FRPSQLTKALAHGRH*INTSSEHDHSRTMT Trigger: GGTCATGGTGCGTGAATGGTCATGCTCTGAAGAAGTGTTTATCAAGTGCCTACCATGTGCCAGGGCCTTTGTGAGCTGTGAGGGTCTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030385.13 ENSMUST00000106316.2 |
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| 3UTR-3UTR TCA 90 bp | CACTTGATAAACACTTCTTCAGAGCATGACCATTCACGCACCATGACCTTACAGTTTCACTCTCAGAACTaGAGTCCCAGCAGGCACTTG | + |
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Preference number: 2 (lower is better) Translates to: HLINTSSEHDHSRTMTLQFHSQN*SPSRHL Trigger: CAAGTGCCTGCTGGGACTTCAGTTCTGAGAGTGAAA...CTGTAAGGTCATGGTGCGTGAATGGTCATGCTCTGAAGAAGTGTTTATCAAGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030385.13 ENSMUST00000106316.2 |
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| 3UTR GCA 72 bp | TACAGTAGGCCAACACGCAGCGGCTCCTGGCTCATCTaGTCTGCAGGCCACGCAATCCCACAGTCCTCTTTG | + |
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Preference number: 3 (lower is better) Translates to: YSRPTRSGSWLI*SAGHAIPQSSL Trigger: CAAAGAGGACTGTGGGATTGCGTGGCCTGCAGAGCAGATGAGCCAGGAGCCGCTGCGTGTTGGCCTACTGTA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030385.13 ENSMUST00000106316.2 |
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| 3UTR TCA 72 bp | GATCCAGGAGAGCGTCCAGTGTTTCACTCTCAGAACTaGAGTCCCAGCAGGCACTTGCCTGCACACCGCGTT | + |
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Preference number: 3 (lower is better) Translates to: DPGERPVFHSQN*SPSRHLPAHRV Trigger: AACGCGGTGTGCAGGCAAGTGCCTGCTGGGACTTCAGTTCTGAGAGTGAAACACTGGACGCTCTCCTGGATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030385.13 ENSMUST00000106316.2 |
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| 3UTR-3UTR CAA 90 bp | AGTAGGCCAACACGCAGCGGCTCCTGGCTCATCTGCTCTGCAGGCCACGCAATCCCTCTTTGTGAACTCTaGTTCACTTTCCAGATCCAG | + |
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Preference number: 3 (lower is better) Translates to: SRPTRSGSWLICSAGHAIPLCEL*FTFQIQ Trigger: CTGGATCTGGAAAGTGAACAAGAGTTCACAAAGAGG...GATTGCGTGGCCTGCAGAGCAGATGAGCCAGGAGCCGCTGCGTGTTGGCCTACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030385.13 ENSMUST00000106316.2 |
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| 3UTR TCA 72 bp | TGCTCTGCAGGCCACGCAATCCCACAGTCCTCTTTGTaGACTCTTGTTCACTTTCCAGATCCAGGAGAGCGT | + |
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Preference number: 3 (lower is better) Translates to: CSAGHAIPQSSL*TLVHFPDPGER Trigger: ACGCTCTCCTGGATCTGGAAAGTGAACAAGAGTTCACAAAGAGGACTGTGGGATTGCGTGGCCTGCAGAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030385.13 ENSMUST00000106316.2 |
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| 3UTR GCA 72 bp | TCACTCTCAGAACTGAAGTCCCAGCAGGCACTTGCCTaGACACCGCGTTTACTATCTCTTCACTGTGTTGAT | + |
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Preference number: 3 (lower is better) Translates to: SLSELKSQQALA*TPRLLSLHCVD Trigger: ATCAACACAGTGAAGAGATAGTAAACGCGGTGTGCAGGCAAGTGCCTGCTGGGACTTCAGTTCTGAGAGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030385.13 ENSMUST00000106316.2 |
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| 3UTR GCA 72 bp | CATAAATTTTTGTACATCCAGTTCCCAAATGAGACGTaGTCATTCATCTTTCAGACCCTCACAGCTCACAAA | + |
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Preference number: 3 (lower is better) Translates to: HKFLYIQFPNET*SFIFQTLTAHK Trigger: TTTGTGAGCTGTGAGGGTCTGAAAGATGAATGAGCACGTCTCATTTGGGAACTGGATGTACAAAAATTTATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030385.13 ENSMUST00000106316.2 |
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| CDS-3UTR CCA 90 bp | AGTAGGCCAACACGCAGCGGCTCCTGGCTCATCTGCTCTGCAGGCCACGCAATCGCTGACAGCCAGGCCTaGGGCGGGAAGCGGTGGGCA | + |
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Preference number: 4 (lower is better) Translates to: SRPTRSGSWLICSAGHAIADSQA*GGKRWA Trigger: TGCCCACCGCTTCCCGCCCCAGGCCTGGCTGTCAGC...GATTGCGTGGCCTGCAGAGCAGATGAGCCAGGAGCCGCTGCGTGTTGGCCTACT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030385.13 |
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| CDS-3UTR TCA 90 bp | GTGCTCATTCATCTTTCAGACCCTCACAGCTCACAAAGGCCCTGGCACATGGTAAGAAGGCCGAAGGGCTaGCAGCCAGGCCTGGGGCGG | + |
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Preference number: 4 (lower is better) Translates to: VLIHLSDPHSSQRPWHMVRRPKG*QPGLGR Trigger: CCGCCCCAGGCCTGGCTGTCAGCCCTTCGGCCTTCT...TACCATGTGCCAGGGCCTTTGTGAGCTGTGAGGGTCTGAAAGATGAATGAGCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030385.13 |
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| CDS-3UTR CCA 90 bp | CATTCATCTTTCAGACCCTCACAGCTCACAAAGGCCCTGGCACATGGTAGGCACCTTGCCCGACTGGGCTaGGCCAGAAGGCCGAAGGGC | + |
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Preference number: 4 (lower is better) Translates to: HSSFRPSQLTKALAHGRHLARLG*ARRPKG Trigger: GCCCTTCGGCCTTCTGGCCCAGCCCAGTCGGGCAAG...GTGCCTACCATGTGCCAGGGCCTTTGTGAGCTGTGAGGGTCTGAAAGATGAATG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030385.13 |
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| CDS-3UTR TCA 90 bp | CTGAAGTCCCAGCAGGCACTTGCCTGCACACCGCGTTTACTATCTCTTCACTGTTGGTGCCTCCAGATGTaGTCAGCACCACCCGCCGGC | + |
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Preference number: 4 (lower is better) Translates to: LKSQQALACTPRLLSLHCWCLQM*SAPPAG Trigger: GCCGGCGGGTGGTGCTGATCACATCTGGAGGCACCA...ACAGTGAAGAGATAGTAAACGCGGTGTGCAGGCAAGTGCCTGCTGGGACTTCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030385.13 |
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| CDS-3UTR GCA 90 bp | AGTAGGCCAACACGCAGCGGCTCCTGGCTCATCTGCTCTGCAGGCCACGCAATCTATCACCAAGCCTTTTaGCACCTCCTCCTCGGACAG | + |
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Preference number: 4 (lower is better) Translates to: SRPTRSGSWLICSAGHAIYHQAF*HLLLGQ Trigger: CTGTCCGAGGAGGAGGTGGCAAAAGGCTTGGTGATA...GATTGCGTGGCCTGCAGAGCAGATGAGCCAGGAGCCGCTGCGTGTTGGCCTACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030385.13 ENSMUST00000106316.2 |
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| CDS-3UTR TCA 90 bp | AGTAGGCCAACACGCAGCGGCTCCTGGCTCATCTGCTCTGCAGGCCACGCAATCCACAAAGGACTTTATTaGCTCCAGGATGTTGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: SRPTRSGSWLICSAGHAIHKGLY*LQDVGH Trigger: GTGGCCAACATCCTGGAGTCAATAAAGTCCTTTGTG...GATTGCGTGGCCTGCAGAGCAGATGAGCCAGGAGCCGCTGCGTGTTGGCCTACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030385.13 ENSMUST00000106316.2 |
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| CDS-3UTR GCA 90 bp | GTGCTCATTCATCTTTCAGACCCTCACAGCTCACAAAGGCCCTGGCACATGGTAGTAGCTCTGCAATGCTaGAGCAAAGCCCGGGAGCGC | + |
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Preference number: 4 (lower is better) Translates to: VLIHLSDPHSSQRPWHMVVALQC*SKARER Trigger: GCGCTCCCGGGCTTTGCTGCAGCATTGCAGAGCTAC...TACCATGTGCCAGGGCCTTTGTGAGCTGTGAGGGTCTGAAAGATGAATGAGCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030385.13 |
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| CDS-3UTR TCA 90 bp | CAGTTCCCAAATGAGACGTGCTCATTCATCTTTCAGACCCTCACAGCTCACAAAAAGAGCCTAATGGACTaGGAGCCAGGGCAGCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: QFPNETCSFIFQTLTAHKKSLMD*EPGQQP Trigger: AGGCTGCTGCCCTGGCTCTCAGTCCATTAGGCTCTT...TTTGTGAGCTGTGAGGGTCTGAAAGATGAATGAGCACGTCTCATTTGGGAACTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030385.13 |
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| CDS-3UTR GCA 90 bp | CTCAGAACTGAAGTCCCAGCAGGCACTTGCCTGCACACCGCGTTTACTATCTCTATCTTCATTGTTATCTaGAGTGGGCCACCAGATGAG | + |
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Preference number: 4 (lower is better) Translates to: LRTEVPAGTCLHTAFTISIFIVI*SGPPDE Trigger: CTCATCTGGTGGCCCACTGCAGATAACAATGAAGAT...AGAGATAGTAAACGCGGTGTGCAGGCAAGTGCCTGCTGGGACTTCAGTTCTGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030385.13 ENSMUST00000106316.2 |
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| CDS-3UTR GCA 90 bp | CACTTGATAAACACTTCTTCAGAGCATGACCATTCACGCACCATGACCTTACAGTTGGTAGCTCTGCAATaGTGCAGCAAAGCCCGGGAG | + |
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Preference number: 4 (lower is better) Translates to: HLINTSSEHDHSRTMTLQLVALQ*CSKARE Trigger: CTCCCGGGCTTTGCTGCAGCATTGCAGAGCTACCAA...CTGTAAGGTCATGGTGCGTGAATGGTCATGCTCTGAAGAAGTGTTTATCAAGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030385.13 |
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| CDS-3UTR GCA 90 bp | GTGCTCATTCATCTTTCAGACCCTCACAGCTCACAAAGGCCCTGGCACATGGTAATCTTCATTGTTATCTaGAGTGGGCCACCAGATGAG | + |
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Preference number: 4 (lower is better) Translates to: VLIHLSDPHSSQRPWHMVIFIVI*SGPPDE Trigger: CTCATCTGGTGGCCCACTGCAGATAACAATGAAGAT...TACCATGTGCCAGGGCCTTTGTGAGCTGTGAGGGTCTGAAAGATGAATGAGCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030385.13 ENSMUST00000106316.2 |
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| CDS-3UTR TCA 90 bp | ACAGTCCTCTTTGTGAACTCTTGTTCACTTTCCAGATCCAGGAGAGCGTCCAGTCACAAAGGACTTTATTaGCTCCAGGATGTTGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: TVLFVNSCSLSRSRRASSHKGLY*LQDVGH Trigger: GTGGCCAACATCCTGGAGTCAATAAAGTCCTTTGTG...ACTGGACGCTCTCCTGGATCTGGAAAGTGAACAAGAGTTCACAAAGAGGACTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030385.13 ENSMUST00000106316.2 |
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| CDS CCA 90 bp | CCCGGGAGCGCATTCTCTTCGGCCTCCAGACTCAGCTTGCCCGACTaGGCTGGGCCAGAAGGCCGAAGGGCTGACAGCCAGGCCTGGGGC | + |
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Preference number: 5 (lower is better) Translates to: PGSAFSSASRLSLPD*AGPEGRRADSQAWG Trigger: GCCCCAGGCCTGGCTGTCAGCCCTTCGGCCTTCTGGCCCAGCCCAGTCGGGCAAGCTGAGTCTGGAGGCCGAAGAGAATGCGCTCCCGGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030385.13 |
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| CDS TCA 90 bp | CAGCCAGGAAGACCTCCGCCGACGCGGCTCCGCGTCGCCCGCTACTaGAGTTGTCCAGAAAGCGCACGGCTCGCGCTTCCAGGGGGACCT | + |
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Preference number: 5 (lower is better) Translates to: QPGRPPPTRLRVARY*SCPESARLALPGGP Trigger: AGGTCCCCCTGGAAGCGCGAGCCGTGCGCTTTCTGGACAACTTCAGTAGCGGGCGACGCGGAGCCGCGTCGGCGGAGGTCTTCCTGGCTG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030385.13 |
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| CDS GCA 90 bp | CAGCAAAGCCCGGGAGCGCATTCTCTTCGGCCTCCAGACTCAGCTTaGCCGACTGGGCTGGGCCAGAAGGCCGAAGGGCTGACAGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: QQSPGAHSLRPPDSA*PTGLGQKAEGLTAR Trigger: CCTGGCTGTCAGCCCTTCGGCCTTCTGGCCCAGCCCAGTCGGGCAAGCTGAGTCTGGAGGCCGAAGAGAATGCGCTCCCGGGCTTTGCTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030385.13 |
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| CDS GCA 90 bp | CAGAAAGGTGCCGGCAGCGGCTGCCTCTTGGTAGCTCTGCAATGCTaGAGCAAAGCCCGGGAGCGCATTCTCTTCGGCCTCCAGACTCAG | + |
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Preference number: 5 (lower is better) Translates to: QKGAGSGCLLVALQC*SKARERILFGLQTQ Trigger: CTGAGTCTGGAGGCCGAAGAGAATGCGCTCCCGGGCTTTGCTGCAGCATTGCAGAGCTACCAAGAGGCAGCCGCTGCCGGCACCTTTCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030385.13 |
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| CDS GCA 90 bp | AGCCAGAAAGGTGCCGGCAGCGGCTGCCTCTTGGTAGCTCTGCAATaGTGCAGCAAAGCCCGGGAGCGCATTCTCTTCGGCCTCCAGACT | + |
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Preference number: 5 (lower is better) Translates to: SQKGAGSGCLLVALQ*CSKARERILFGLQT Trigger: AGTCTGGAGGCCGAAGAGAATGCGCTCCCGGGCTTTGCTGCAGCATTGCAGAGCTACCAAGAGGCAGCCGCTGCCGGCACCTTTCTGGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030385.13 |
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| CDS GCA 90 bp | CGCCAAAGTGGTAAACTCTACAGCCAGAAAGGTGCCGGCAGCGGCTaGCTCTTGGTAGCTCTGCAATGCTGCAGCAAAGCCCGGGAGCGC | + |
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Preference number: 5 (lower is better) Translates to: RQSGKLYSQKGAGSG*LLVALQCCSKARER Trigger: GCGCTCCCGGGCTTTGCTGCAGCATTGCAGAGCTACCAAGAGGCAGCCGCTGCCGGCACCTTTCTGGCTGTAGAGTTTACCACTTTGGCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030385.13 |
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| CDS-3UTR CAA 90 bp | GGCCAACACGCAGCGGCTCCTGGCTCATCTGCTCTGCAGGCCACGCAATCCCACTTAGGAGCCCAGTCTTaGACCAGAGGGGAAAGCATC | + |
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Preference number: 5 (lower is better) Translates to: GQHAAAPGSSALQATQSHLGAQS*TRGESI Trigger: GATGCTTTCCCCTCTGGTCAAAGACTGGGCTCCTAA...GTGGGATTGCGTGGCCTGCAGAGCAGATGAGCCAGGAGCCGCTGCGTGTTGGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030385.13 ENSMUST00000106316.2 |
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| CDS-3UTR CAA 90 bp | GGCCAACACGCAGCGGCTCCTGGCTCATCTGCTCTGCAGGCCACGCAATCCCACTCTGTCTCCGAGTCTTaGGTTACAATAATCACAAAG | + |
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Preference number: 5 (lower is better) Translates to: GQHAAAPGSSALQATQSHSVSES*VTIITK Trigger: CTTTGTGATTATTGTAACCAAAGACTCGGAGACAGA...GTGGGATTGCGTGGCCTGCAGAGCAGATGAGCCAGGAGCCGCTGCGTGTTGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030385.13 ENSMUST00000106316.2 |
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| CDS-3UTR CAA 90 bp | CACTTGATAAACACTTCTTCAGAGCATGACCATTCACGCACCATGACCTTACAGTTAGGAGCCCAGTCTTaGACCAGAGGGGAAAGCATC | + |
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Preference number: 5 (lower is better) Translates to: HLINTSSEHDHSRTMTLQLGAQS*TRGESI Trigger: GATGCTTTCCCCTCTGGTCAAAGACTGGGCTCCTAA...CTGTAAGGTCATGGTGCGTGAATGGTCATGCTCTGAAGAAGTGTTTATCAAGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030385.13 ENSMUST00000106316.2 |
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| CDS-3UTR CAA 90 bp | CCACGCAATCCCACAGTCCTCTTTGTGAACTCTTGTTCACTTTCCAGATCCAGGTCTGTCTCCGAGTCTTaGGTTACAATAATCACAAAG | + |
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Preference number: 5 (lower is better) Translates to: PRNPTVLFVNSCSLSRSRSVSES*VTIITK Trigger: CTTTGTGATTATTGTAACCAAAGACTCGGAGACAGA...CCTGGATCTGGAAAGTGAACAAGAGTTCACAAAGAGGACTGTGGGATTGCGTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030385.13 ENSMUST00000106316.2 |
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| CDS CAA 72 bp | TCCGCCGACGCGGCTCCGCGTCGCCCGCTACTGAAGTaGTCCAGAAAGCGCACGGCTCGCGCTTCCAGGGGG | + |
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Preference number: 6 (lower is better) Translates to: SADAAPRRPLLK*SRKRTARASRG Trigger: CCCCCTGGAAGCGCGAGCCGTGCGCTTTCTGGACAACTTCAGTAGCGGGCGACGCGGAGCCGCGTCGGCGGA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030385.13 |
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| CDS CAA 90 bp | AGGAAGACCTCCGCCGACGCGGCTCCGCGTCGCCCGCTACTGAAGTaGTCCAGAAAGCGCACGGCTCGCGCTTCCAGGGGGACCTTGGTG | + |
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Preference number: 6 (lower is better) Translates to: RKTSADAAPRRPLLK*SRKRTARASRGTLV Trigger: CACCAAGGTCCCCCTGGAAGCGCGAGCCGTGCGCTTTCTGGACAACTTCAGTAGCGGGCGACGCGGAGCCGCGTCGGCGGAGGTCTTCCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030385.13 |
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| CDS GCA 72 bp | CCGGGAGCGCATTCTCTTCGGCCTCCAGACTCAGCTTaGCCGACTGGGCTGGGCCAGAAGGCCGAAGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: PGAHSLRPPDSA*PTGLGQKAEGL Trigger: CAGCCCTTCGGCCTTCTGGCCCAGCCCAGTCGGGCAAGCTGAGTCTGGAGGCCGAAGAGAATGCGCTCCCGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030385.13 |
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| CDS CAA 90 bp | GCAGCAAAGCCCGGGAGCGCATTCTCTTCGGCCTCCAGACTCAGCTaGCCCGACTGGGCTGGGCCAGAAGGCCGAAGGGCTGACAGCCAG | + |
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Preference number: 6 (lower is better) Translates to: AAKPGSAFSSASRLS*PDWAGPEGRRADSQ Trigger: CTGGCTGTCAGCCCTTCGGCCTTCTGGCCCAGCCCAGTCGGGCAAGCTGAGTCTGGAGGCCGAAGAGAATGCGCTCCCGGGCTTTGCTGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030385.13 |
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| CDS CCA 72 bp | GCATTCTCTTCGGCCTCCAGACTCAGCTTGCCCGACTaGGCTGGGCCAGAAGGCCGAAGGGCTGACAGCCAG | + |
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Preference number: 6 (lower is better) Translates to: AFSSASRLSLPD*AGPEGRRADSQ Trigger: CTGGCTGTCAGCCCTTCGGCCTTCTGGCCCAGCCCAGTCGGGCAAGCTGAGTCTGGAGGCCGAAGAGAATGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030385.13 |
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| CDS GCA 72 bp | GGTAAACTCTACAGCCAGAAAGGTGCCGGCAGCGGCTaGCTCTTGGTAGCTCTGCAATGCTGCAGCAAAGCC | + |
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Preference number: 6 (lower is better) Translates to: GKLYSQKGAGSG*LLVALQCCSKA Trigger: GGCTTTGCTGCAGCATTGCAGAGCTACCAAGAGGCAGCCGCTGCCGGCACCTTTCTGGCTGTAGAGTTTACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030385.13 |
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