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Pregenerated sensors for PPBP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029372

Ensembl transcript IDs: ENSMUST00000031319.8

Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GACCAGAGCGAAAACTGCTTGACTCCAGGCGATTTCCGTTGCAATTaGCCACTACGAAATTTATCATTATATATGTATATAACAATGCTC +
Preference number: 1 (lower is better)
Translates to: DQSENCLTPGDFRCN*PLRNLSLYMYITML
Trigger: GAGCATTGTTATATACATATATAATGATAAATTTCGTAGTGGTCAATTGCAACGGAAATCGCCTGGAGTCAAGCAGTTTTCGCTCTGGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031319.8
3UTR-3UTR TCA 90 bp TTGCAGGTTGCAACTTGGCTTGCCCGTCTTCATCATTGTTTGTTTGTTTGTTGTACCCTCAACCCTTCCTaGGCAGGAAAATGGTTTGGC +
Preference number: 2 (lower is better)
Translates to: LQVATWLARLHHCLFVCCTLNPS*AGKWFG
Trigger: GCCAAACCATTTTCCTGCTCAGGAAGGGTTGAGGGT...ACAACAAACAAACAAACAATGATGAAGACGGGCAAGCCAAGTTGCAACCTGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031319.8
3UTR CAA 90 bp TGTTGCAGAGGTTGCTTGGAAACAAGACATTCTAGGGATAAGACATaGGAAAAACATGGTCATGACCAGAGCGAAAACTGCTTGACTCCA +
Preference number: 2 (lower is better)
Translates to: CCRGCLETRHSRDKT*EKHGHDQSENCLTP
Trigger: TGGAGTCAAGCAGTTTTCGCTCTGGTCATGACCATGTTTTTCCAATGTCTTATCCCTAGAATGTCTTGTTTCCAAGCAACCTCTGCAACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031319.8
3UTR CAA 90 bp AATTGCAGGTTGCAACTTGGCTTGCCCGTCTTCATCATTGTTTGTTaGTTTGTTGTGACATTCTTTATCATGCCTTCTCAGAATACAGTG +
Preference number: 2 (lower is better)
Translates to: NCRLQLGLPVFIIVC*FVVTFFIMPSQNTV
Trigger: CACTGTATTCTGAGAAGGCATGATAAAGAATGTCACAACAAACAAACAAACAATGATGAAGACGGGCAAGCCAAGTTGCAACCTGCAATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031319.8
3UTR CAA 90 bp CATAAATTGCAGGTTGCAACTTGGCTTGCCCGTCTTCATCATTGTTaGTTTGTTTGTTGTGACATTCTTTATCATGCCTTCTCAGAATAC +
Preference number: 2 (lower is better)
Translates to: HKLQVATWLARLHHC*FVCCDILYHAFSEY
Trigger: GTATTCTGAGAAGGCATGATAAAGAATGTCACAACAAACAAACAAACAATGATGAAGACGGGCAAGCCAAGTTGCAACCTGCAATTTATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031319.8
3UTR-3UTR CAA 90 bp TGCAGGTTGCAACTTGGCTTGCCCGTCTTCATCATTGTTTGTTTGTTTGTTGTGGAGCAGGAAAATGGTTaGGCACAGATGAAGCAGCTG +
Preference number: 3 (lower is better)
Translates to: CRLQLGLPVFIIVCLFVVEQENG*AQMKQL
Trigger: CAGCTGCTTCATCTGTGCCAAACCATTTTCCTGCTC...CACAACAAACAAACAAACAATGATGAAGACGGGCAAGCCAAGTTGCAACCTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031319.8
3UTR TCA 72 bp TCTACCAAGTCCAGATTTCAAACCCTCAACCCTTCCTaGGCAGGAAAATGGTTTGGCACAGATGAAGCAGCT +
Preference number: 3 (lower is better)
Translates to: STKSRFQTLNPS*AGKWFGTDEAA
Trigger: AGCTGCTTCATCTGTGCCAAACCATTTTCCTGCTCAGGAAGGGTTGAGGGTTTGAAATCTGGACTTGGTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031319.8
3UTR-3UTR CAA 90 bp TATGTAAAATGTTGCAGAGGTTGCTTGGAAACAAGACATTCTAGGGATAAGACAATTGCAGGTTGCAACTaGGCTTGCCCGTCTTCATCA +
Preference number: 3 (lower is better)
Translates to: YVKCCRGCLETRHSRDKTIAGCN*ACPSSS
Trigger: TGATGAAGACGGGCAAGCCAAGTTGCAACCTGCAAT...TGTCTTATCCCTAGAATGTCTTGTTTCCAAGCAACCTCTGCAACATTTTACATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031319.8
3UTR CCA 72 bp ACTGCAGAAATAGACCATAAATTGCAGGTTGCAACTTaGCTTGCCCGTCTTCATCATTGTTTGTTTGTTTGT +
Preference number: 3 (lower is better)
Translates to: TAEIDHKLQVAT*LARLHHCLFVC
Trigger: ACAAACAAACAAACAATGATGAAGACGGGCAAGCCAAGTTGCAACCTGCAATTTATGGTCTATTTCTGCAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031319.8
CDS-3UTR CCA 90 bp AGTCCAGATTTCAAACCCTCAACCCTTCCTGAGCAGGAAAATGGTTTGGCACAGCTGGAGGTTATGAAGTaGGCAGGCCCTGGTGCAGGA +
Preference number: 4 (lower is better)
Translates to: SPDFKPSTLPEQENGLAQLEVMK*AGPGAG
Trigger: TCCTGCACCAGGGCCTGCCCACTTCATAACCTCCAG...CTGTGCCAAACCATTTTCCTGCTCAGGAAGGGTTGAGGGTTTGAAATCTGGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031319.8
CDS-3UTR CCA 90 bp TGCAGGTTGCAACTTGGCTTGCCCGTCTTCATCATTGTTTGTTTGTTTGTTGTGATGGGATTCCAGAGATaGTATTCGTACATCTGCAGC +
Preference number: 4 (lower is better)
Translates to: CRLQLGLPVFIIVCLFVVMGFQR*YSYICS
Trigger: GCTGCAGATGTACGAATACCATCTCTGGAATCCCAT...CACAACAAACAAACAAACAATGATGAAGACGGGCAAGCCAAGTTGCAACCTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031319.8
CDS-3UTR CCA 90 bp AGTCCAGATTTCAAACCCTCAACCCTTCCTGAGCAGGAAAATGGTTTGGCACAGGGAGATAGAATTGAATaGGATTCCAGAGATGGTATT +
Preference number: 4 (lower is better)
Translates to: SPDFKPSTLPEQENGLAQGDRIE*DSRDGI
Trigger: AATACCATCTCTGGAATCCCATTCAATTCTATCTCC...CTGTGCCAAACCATTTTCCTGCTCAGGAAGGGTTGAGGGTTTGAAATCTGGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031319.8
3UTR CAA 72 bp CAGGTTGCAACTTGGCTTGCCCGTCTTCATCATTGTTaGTTTGTTTGTTGTGACATTCTTTATCATGCCTTC +
Preference number: 4 (lower is better)
Translates to: QVATWLARLHHC*FVCCDILYHAF
Trigger: GAAGGCATGATAAAGAATGTCACAACAAACAAACAAACAATGATGAAGACGGGCAAGCCAAGTTGCAACCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031319.8
3UTR CAA 72 bp TTGCAACTTGGCTTGCCCGTCTTCATCATTGTTTGTTaGTTTGTTGTGACATTCTTTATCATGCCTTCTCAG +
Preference number: 4 (lower is better)
Translates to: LQLGLPVFIIVC*FVVTFFIMPSQ
Trigger: CTGAGAAGGCATGATAAAGAATGTCACAACAAACAAACAAACAATGATGAAGACGGGCAAGCCAAGTTGCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031319.8
CDS-3UTR GCA 90 bp AGACAGAACGAGAGAACATCCCAATTTCAAAGTGGAAAAATAATTCTACCAAGTCGATATATGGGTCCATaGCATCAGATTTTCCAGCTG +
Preference number: 4 (lower is better)
Translates to: RQNERTSQFQSGKIILPSRYMGP*HQIFQL
Trigger: CAGCTGGAAAATCTGATGGCATGGACCCATATATCG...ACTTGGTAGAATTATTTTTCCACTTTGAAATTGGGATGTTCTCTCGTTCTGTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000031319.8
CDS TCA 90 bp AGCGCAACAAGGATCAGGCCCAGCAGCAGCAAGATCTGGAGGTTATaGAGTGGGCAGGCCCTGGTGCAGGACGATGTAGGTCTGAGTCTG +
Preference number: 5 (lower is better)
Translates to: SATRIRPSSSKIWRL*SGQALVQDDVGLSL
Trigger: CAGACTCAGACCTACATCGTCCTGCACCAGGGCCTGCCCACTTCATAACCTCCAGATCTTGCTGCTGCTGGGCCTGATCCTTGTTGCGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031319.8
CDS CCA 90 bp GTGAACTCCTGGCCTGTACACATTCACAAGGGAGATAGAATTGAATaGGATTCCAGAGATGGTATTCGTACATCTGCAGCGCAGTTCGAT +
Preference number: 5 (lower is better)
Translates to: VNSWPVHIHKGDRIE*DSRDGIRTSAAQFD
Trigger: ATCGAACTGCGCTGCAGATGTACGAATACCATCTCTGGAATCCCATTCAATTCTATCTCCCTTGTGAATGTGTACAGGCCAGGAGTTCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031319.8
CDS-3UTR CAA 90 bp AAACCCTCAACCCTTCCTGAGCAGGAAAATGGTTTGGCACAGATGAAGCAGCTGACAAGGGAGATAGAATaGAATGGGATTCCAGAGATG +
Preference number: 5 (lower is better)
Translates to: KPSTLPEQENGLAQMKQLTREIE*NGIPEM
Trigger: CATCTCTGGAATCCCATTCAATTCTATCTCCCTTGT...CAGCTGCTTCATCTGTGCCAAACCATTTTCCTGCTCAGGAAGGGTTGAGGGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031319.8
CDS CCA 90 bp ATTCTTCAGTGTGGCTATCACTTCCACATCAGCACAGTGAACTCCTaGCCTGTACACATTCACAAGGGAGATAGAATTGAATGGGATTCC +
Preference number: 5 (lower is better)
Translates to: ILQCGYHFHISTVNS*PVHIHKGDRIEWDS
Trigger: GGAATCCCATTCAATTCTATCTCCCTTGTGAATGTGTACAGGCCAGGAGTTCACTGTGCTGATGTGGAAGTGATAGCCACACTGAAGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031319.8
CDS TCA 72 bp AGGATCAGGCCCAGCAGCAGCAAGATCTGGAGGTTATaGAGTGGGCAGGCCCTGGTGCAGGACGATGTAGGT +
Preference number: 6 (lower is better)
Translates to: RIRPSSSKIWRL*SGQALVQDDVG
Trigger: ACCTACATCGTCCTGCACCAGGGCCTGCCCACTTCATAACCTCCAGATCTTGCTGCTGCTGGGCCTGATCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031319.8
CDS TCA 72 bp TTCTTCAGTGTGGCTATCACTTCCACATCAGCACAGTaGACTCCTGGCCTGTACACATTCACAAGGGAGATA +
Preference number: 6 (lower is better)
Translates to: FFSVAITSTSAQ*TPGLYTFTREI
Trigger: TATCTCCCTTGTGAATGTGTACAGGCCAGGAGTTCACTGTGCTGATGTGGAAGTGATAGCCACACTGAAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031319.8