Pregenerated sensors for PPAT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029246Ensembl transcript IDs: ENSMUST00000140076.2, ENSMUST00000155272.8
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CGTAGCAGACTCTGGAACTGTGCTAACCAAGTCCGCCTCCACGGGTaGTTCAATTGCCAGCTGCTGACCACACCGGTACCTTACTGTATA | + |
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Preference number: 1 (lower is better) Translates to: RSRLWNCANQVRLHG*FNCQLLTTPVPYCI Trigger: TATACAGTAAGGTACCGGTGTGGTCAGCAGCTGGCAATTGAAGCACCCGTGGAGGCGGACTTGGTTAGCACAGTTCCAGAGTCTGCTACG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR GCA 90 bp | CTGAAATGGCTCTGGGGCTGTGAAATGCCAATCCGCCTGTGTCTATaGCATACGATAACCTCAGGCACTGCAGCACATGACCTTAAAGTA | + |
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Preference number: 1 (lower is better) Translates to: LKWLWGCEMPIRLCL*HTITSGTAAHDLKV Trigger: TACTTTAAGGTCATGTGCTGCAGTGCCTGAGGTTATCGTATGGCATAGACACAGGCGGATTGGCATTTCACAGCCCCAGAGCCATTTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR CCA 90 bp | TCTCAACTACGAATGGCTGGCAGTTTTCCAGCTCACACTTTCCCGTaGTGGCGTACCTCGTATGTCCGATTCCAAGGTTTGAGTCATACA | + |
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Preference number: 1 (lower is better) Translates to: SQLRMAGSFPAHTFP*WRTSYVRFQGLSHT Trigger: TGTATGACTCAAACCTTGGAATCGGACATACGAGGTACGCCACCACGGGAAAGTGTGAGCTGGAAAACTGCCAGCCATTCGTAGTTGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR CCA 90 bp | CAACTACGAATGGCTGGCAGTTTTCCAGCTCACACTTTCCCGTGGTaGCGTACCTCGTATGTCCGATTCCAAGGTTTGAGTCATACAATT | + |
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Preference number: 1 (lower is better) Translates to: QLRMAGSFPAHTFPW*RTSYVRFQGLSHTI Trigger: AATTGTATGACTCAAACCTTGGAATCGGACATACGAGGTACGCCACCACGGGAAAGTGTGAGCTGGAAAACTGCCAGCCATTCGTAGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR GCA 90 bp | ATGTCACCAGGCCTGCCTAACAACATAAAGCAGAACAAACATGATTaGGAGCTAACACTTGGGTACAGGCAATCTAATTCCCAAAACACT | + |
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Preference number: 1 (lower is better) Translates to: MSPGLPNNIKQNKHD*ELTLGYRQSNSQNT Trigger: AGTGTTTTGGGAATTAGATTGCCTGTACCCAAGTGTTAGCTCGCAATCATGTTTGTTCTGCTTTATGTTGTTAGGCAGGCCTGGTGACAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR CCA 90 bp | GCTCCAGATATATTTTTAGTCATTCTGGTACATCCCCAAGAGAGATaGGAAAGGACTGCAAAGCTGTCCATTTCCCTCCATCACAATGAA | + |
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Preference number: 1 (lower is better) Translates to: APDIFLVILVHPQER*ERTAKLSISLHHNE Trigger: TTCATTGTGATGGAGGGAAATGGACAGCTTTGCAGTCCTTTCCCATCTCTCTTGGGGATGTACCAGAATGACTAAAAATATATCTGGAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR TCA 90 bp | GTACAGACTAGATACCTATGGGGCACAATGAACTCAAATTCTTCATaGAACTTTATAAAGCCCCTGTACATAACAGCCCTATACTCTAGC | + |
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Preference number: 1 (lower is better) Translates to: VQTRYLWGTMNSNSS*NFIKPLYITALYSS Trigger: GCTAGAGTATAGGGCTGTTATGTACAGGGGCTTTATAAAGTTTCATGAAGAATTTGAGTTCATTGTGCCCCATAGGTATCTAGTCTGTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR-3UTR TCA 90 bp | CGCCTGTGTCTATGCCATACGATAACCTCAGGCACTGCAGCACATGACCTTAAAAGAGGCTGCACCCACTaGAATGGCTCTGGGGCTGTG | + |
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Preference number: 2 (lower is better) Translates to: RLCLCHTITSGTAAHDLKRGCTH*NGSGAV Trigger: CACAGCCCCAGAGCCATTTCAGTGGGTGCAGCCTCT...TTTAAGGTCATGTGCTGCAGTGCCTGAGGTTATCGTATGGCATAGACACAGGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR-3UTR TCA 90 bp | CGCCTGTGTCTATGCCATACGATAACCTCAGGCACTGCAGCACATGACCTTAAAATGGCTCTGGGGCTGTaGAATGCCAATCCGCCTGTG | + |
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Preference number: 2 (lower is better) Translates to: RLCLCHTITSGTAAHDLKMALGL*NANPPV Trigger: CACAGGCGGATTGGCATTTCACAGCCCCAGAGCCAT...TTTAAGGTCATGTGCTGCAGTGCCTGAGGTTATCGTATGGCATAGACACAGGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR-3UTR GCA 90 bp | GCAACACATCTGTCCAGGCAGCTACCATTCCAGCTCCACAGGGTACTGCCCAGTGAGATGGGAAAGGACTaGAAAGCTGTCCATTTCCCT | + |
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Preference number: 2 (lower is better) Translates to: ATHLSRQLPFQLHRVLPSEMGKD*KAVHFP Trigger: AGGGAAATGGACAGCTTTGCAGTCCTTTCCCATCTC...ACTGGGCAGTACCCTGTGGAGCTGGAATGGTAGCTGCCTGGACAGATGTGTTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR-3UTR CCA 90 bp | CTACAGTCTGGAAGCAACACATCTGTCCAGGCAGCTACCATTCCAGCTCCACAGACCAGTTCCCCGTTATaGGCCACAGCTATTTTTCCG | + |
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Preference number: 2 (lower is better) Translates to: LQSGSNTSVQAATIPAPQTSSPL*ATAIFP Trigger: CGGAAAAATAGCTGTGGCCCATAACGGGGAACTGGT...CTGTGGAGCTGGAATGGTAGCTGCCTGGACAGATGTGTTGCTTCCAGACTGTAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR-3UTR TCA 90 bp | CGCCTGTGTCTATGCCATACGATAACCTCAGGCACTGCAGCACATGACCTTAAAAAAGCTGCAAGACTCTaGGGACACCACCCATCCTTC | + |
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Preference number: 2 (lower is better) Translates to: RLCLCHTITSGTAAHDLKKAARL*GHHPSF Trigger: GAAGGATGGGTGGTGTCCTCAGAGTCTTGCAGCTTT...TTTAAGGTCATGTGCTGCAGTGCCTGAGGTTATCGTATGGCATAGACACAGGCG 51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR-3UTR GCA 90 bp | CACACTTTCCCGTGGTGGCGTACCTCGTATGTCCGATTCCAAGGTTTGAGTCATCCTGAATTTAGGCACTaGACTCCCATCACTGGTCAC | + |
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Preference number: 2 (lower is better) Translates to: HTFPWWRTSYVRFQGLSHPEFRH*TPITGH Trigger: GTGACCAGTGATGGGAGTGCAGTGCCTAAATTCAGG...ATGACTCAAACCTTGGAATCGGACATACGAGGTACGCCACCACGGGAAAGTGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR-3UTR CCA 90 bp | TTCCACATAAGGCAGCCCACACTTTGTTGCATATCCCAGCGCTGCAGGCGTAGCTCTTGCTACCCAGTCTaGAGCATCATCTTTTTCTTG | + |
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Preference number: 2 (lower is better) Translates to: FHIRQPTLCCISQRCRRSSCYPV*SIIFFL Trigger: CAAGAAAAAGATGATGCTCCAGACTGGGTAGCAAGA...GCTACGCCTGCAGCGCTGGGATATGCAACAAAGTGTGGGCTGCCTTATGTGGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR-3UTR TCA 90 bp | GCAACACATCTGTCCAGGCAGCTACCATTCCAGCTCCACAGGGTACTGCCCAGTTCCGATTCCAAGGTTTaGGTCATACAATTTCTTCAA | + |
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Preference number: 2 (lower is better) Translates to: ATHLSRQLPFQLHRVLPSSDSKV*VIQFLQ Trigger: TTGAAGAAATTGTATGACTCAAACCTTGGAATCGGA...ACTGGGCAGTACCCTGTGGAGCTGGAATGGTAGCTGCCTGGACAGATGTGTTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR-3UTR GCA 90 bp | AACAACATAAAGCAGAACAAACATGATTGCGAGCTAACACTTGGGTACAGGCAAGTCCGCCTCCACGGGTaGTTCAATTGCCAGCTGCTG | + |
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Preference number: 2 (lower is better) Translates to: NNIKQNKHDCELTLGYRQVRLHG*FNCQLL Trigger: CAGCAGCTGGCAATTGAAGCACCCGTGGAGGCGGAC...TTGCCTGTACCCAAGTGTTAGCTCGCAATCATGTTTGTTCTGCTTTATGTTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR-3UTR CCA 90 bp | GCAACACATCTGTCCAGGCAGCTACCATTCCAGCTCCACAGGGTACTGCCCAGTGTGTATGCGAGTAACTaGGTAATCATTTCACTATCA | + |
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Preference number: 2 (lower is better) Translates to: ATHLSRQLPFQLHRVLPSVYASN*VIISLS Trigger: TGATAGTGAAATGATTACCCAGTTACTCGCATACAC...ACTGGGCAGTACCCTGTGGAGCTGGAATGGTAGCTGCCTGGACAGATGTGTTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR-3UTR CCA 90 bp | TTCCACATAAGGCAGCCCACACTTTGTTGCATATCCCAGCGCTGCAGGCGTAGCGTCTCCGTTAGACCTTaGAATTATATCAAGAGTTCT | + |
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Preference number: 2 (lower is better) Translates to: FHIRQPTLCCISQRCRRSVSVRP*NYIKSS Trigger: AGAACTCTTGATATAATTCCAAGGTCTAACGGAGAC...GCTACGCCTGCAGCGCTGGGATATGCAACAAAGTGTGGGCTGCCTTATGTGGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR-3UTR TCA 90 bp | CGCCTGTGTCTATGCCATACGATAACCTCAGGCACTGCAGCACATGACCTTAAAAGGCCATTTAAAAGTTaGCCTAAAGGCGTTACGTTA | + |
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Preference number: 2 (lower is better) Translates to: RLCLCHTITSGTAAHDLKRPFKS*PKGVTL Trigger: TAACGTAACGCCTTTAGGTCAACTTTTAAATGGCCT...TTTAAGGTCATGTGCTGCAGTGCCTGAGGTTATCGTATGGCATAGACACAGGCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR-3UTR CCA 90 bp | AAAATGTCACCAGGCCTGCCTAACAACATAAAGCAGAACAAACATGATTGCGAGCATCCCCAAGAGAGATaGGAAAGGACTGCAAAGCTG | + |
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Preference number: 2 (lower is better) Translates to: KMSPGLPNNIKQNKHDCEHPQER*ERTAKL Trigger: CAGCTTTGCAGTCCTTTCCCATCTCTCTTGGGGATG...CTCGCAATCATGTTTGTTCTGCTTTATGTTGTTAGGCAGGCCTGGTGACATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR-3UTR CCA 90 bp | AAAATGTCACCAGGCCTGCCTAACAACATAAAGCAGAACAAACATGATTGCGAGCCACTGAAATGGCTCTaGGGCTGTGAAATGCCAATC | + |
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Preference number: 2 (lower is better) Translates to: KMSPGLPNNIKQNKHDCEPLKWL*GCEMPI Trigger: GATTGGCATTTCACAGCCCCAGAGCCATTTCAGTGG...CTCGCAATCATGTTTGTTCTGCTTTATGTTGTTAGGCAGGCCTGGTGACATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR-3UTR CCA 90 bp | AACAACATAAAGCAGAACAAACATGATTGCGAGCTAACACTTGGGTACAGGCAACTGCACTCCCATCACTaGTCACAATACCAGCGCTCT | + |
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Preference number: 2 (lower is better) Translates to: NNIKQNKHDCELTLGYRQLHSHH*SQYQRS Trigger: AGAGCGCTGGTATTGTGACCAGTGATGGGAGTGCAG...TTGCCTGTACCCAAGTGTTAGCTCGCAATCATGTTTGTTCTGCTTTATGTTGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR-3UTR CCA 90 bp | ACCTCAGGCACTGCAGCACATGACCTTAAAGTATTAACATTTTATCTTGACCTGCATCCCCAAGAGAGATaGGAAAGGACTGCAAAGCTG | + |
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Preference number: 2 (lower is better) Translates to: TSGTAAHDLKVLTFYLDLHPQER*ERTAKL Trigger: CAGCTTTGCAGTCCTTTCCCATCTCTCTTGGGGATG...CAGGTCAAGATAAAATGTTAATACTTTAAGGTCATGTGCTGCAGTGCCTGAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR-3UTR TCA 90 bp | AACAACATAAAGCAGAACAAACATGATTGCGAGCTAACACTTGGGTACAGGCAAGCATCATCTTTTTCTTaGGGAGGGGTGTATGCGAGT | + |
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Preference number: 2 (lower is better) Translates to: NNIKQNKHDCELTLGYRQASSFS*GGVYAS Trigger: ACTCGCATACACCCCTCCTCAAGAAAAAGATGATGC...TTGCCTGTACCCAAGTGTTAGCTCGCAATCATGTTTGTTCTGCTTTATGTTGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR-3UTR GCA 90 bp | AACAACATAAAGCAGAACAAACATGATTGCGAGCTAACACTTGGGTACAGGCAAGAGATGGGAAAGGACTaGAAAGCTGTCCATTTCCCT | + |
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Preference number: 2 (lower is better) Translates to: NNIKQNKHDCELTLGYRQEMGKD*KAVHFP Trigger: AGGGAAATGGACAGCTTTGCAGTCCTTTCCCATCTC...TTGCCTGTACCCAAGTGTTAGCTCGCAATCATGTTTGTTCTGCTTTATGTTGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR-3UTR TCA 90 bp | AACAACATAAAGCAGAACAAACATGATTGCGAGCTAACACTTGGGTACAGGCAAAGAGGCTTTTTATCTTaGGACAGGAAAGCCCAGGTT | + |
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Preference number: 2 (lower is better) Translates to: NNIKQNKHDCELTLGYRQRGFLS*DRKAQV Trigger: AACCTGGGCTTTCCTGTCTCAAGATAAAAAGCCTCT...TTGCCTGTACCCAAGTGTTAGCTCGCAATCATGTTTGTTCTGCTTTATGTTGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR-3UTR TCA 90 bp | AAAGGCTCCAGATATATTTTTAGTCATTCTGGTACATCCCCAAGAGAGATGGGAAGAGGCTTTTTATCTTaGGACAGGAAAGCCCAGGTT | + |
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Preference number: 2 (lower is better) Translates to: KGSRYIFSHSGTSPREMGRGFLS*DRKAQV Trigger: AACCTGGGCTTTCCTGTCTCAAGATAAAAAGCCTCT...TCCCATCTCTCTTGGGGATGTACCAGAATGACTAAAAATATATCTGGAGCCTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR-3UTR TCA 90 bp | AAAATGTCACCAGGCCTGCCTAACAACATAAAGCAGAACAAACATGATTGCGAGAAAGCAGAACAAACATaGTTGCGAGCTAACACTTGG | + |
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Preference number: 2 (lower is better) Translates to: KMSPGLPNNIKQNKHDCEKAEQT*LRANTW Trigger: CCAAGTGTTAGCTCGCAATCATGTTTGTTCTGCTTT...CTCGCAATCATGTTTGTTCTGCTTTATGTTGTTAGGCAGGCCTGGTGACATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR-3UTR GCA 90 bp | AACAACATAAAGCAGAACAAACATGATTGCGAGCTAACACTTGGGTACAGGCAAAGACCCATTCCCTTATaGACCCTGAATTTAGGCACT | + |
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Preference number: 2 (lower is better) Translates to: NNIKQNKHDCELTLGYRQRPIPL*TLNLGT Trigger: AGTGCCTAAATTCAGGGTGCATAAGGGAATGGGTCT...TTGCCTGTACCCAAGTGTTAGCTCGCAATCATGTTTGTTCTGCTTTATGTTGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR-3UTR CCA 90 bp | ACAGGCTTGACTGTACAGACTAGATACCTATGGGGCACAATGAACTCAAATTCTACATACATAAGCATGTaGTATCCACTTGGTACCACC | + |
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Preference number: 2 (lower is better) Translates to: TGLTVQTRYLWGTMNSNSTYISM*YPLGTT Trigger: GGTGGTACCAAGTGGATACCACATGCTTATGTATGT...AGAATTTGAGTTCATTGTGCCCCATAGGTATCTAGTCTGTACAGTCAAGCCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR-3UTR CCA 90 bp | AAAATGTCACCAGGCCTGCCTAACAACATAAAGCAGAACAAACATGATTGCGAGACATACATAAGCATGTaGTATCCACTTGGTACCACC | + |
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Preference number: 2 (lower is better) Translates to: KMSPGLPNNIKQNKHDCETYISM*YPLGTT Trigger: GGTGGTACCAAGTGGATACCACATGCTTATGTATGT...CTCGCAATCATGTTTGTTCTGCTTTATGTTGTTAGGCAGGCCTGGTGACATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR-3UTR TCA 90 bp | AAAATGTCACCAGGCCTGCCTAACAACATAAAGCAGAACAAACATGATTGCGAGAGTCCTTGTACAAAATaGATCCTCAGATGCTGCATT | + |
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Preference number: 2 (lower is better) Translates to: KMSPGLPNNIKQNKHDCESPCTK*ILRCCI Trigger: AATGCAGCATCTGAGGATTCATTTTGTACAAGGACT...CTCGCAATCATGTTTGTTCTGCTTTATGTTGTTAGGCAGGCCTGGTGACATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR-3UTR TCA 90 bp | ACAGGCTTGACTGTACAGACTAGATACCTATGGGGCACAATGAACTCAAATTCTAGTCCTTGTACAAAATaGATCCTCAGATGCTGCATT | + |
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Preference number: 2 (lower is better) Translates to: TGLTVQTRYLWGTMNSNSSPCTK*ILRCCI Trigger: AATGCAGCATCTGAGGATTCATTTTGTACAAGGACT...AGAATTTGAGTTCATTGTGCCCCATAGGTATCTAGTCTGTACAGTCAAGCCTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR-3UTR TCA 90 bp | AAAGGCTCCAGATATATTTTTAGTCATTCTGGTACATCCCCAAGAGAGATGGGAACCTATGGGGCACAATaGACTCAAATTCTTCATGAA | + |
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Preference number: 2 (lower is better) Translates to: KGSRYIFSHSGTSPREMGTYGAQ*TQILHE Trigger: TTCATGAAGAATTTGAGTTCATTGTGCCCCATAGGT...TCCCATCTCTCTTGGGGATGTACCAGAATGACTAAAAATATATCTGGAGCCTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR-3UTR CCA 90 bp | AAAATGTCACCAGGCCTGCCTAACAACATAAAGCAGAACAAACATGATTGCGAGAAGACAATCAAATTCTaGCTTATTGGCTATGAGCTC | + |
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Preference number: 2 (lower is better) Translates to: KMSPGLPNNIKQNKHDCEKTIKF*LIGYEL Trigger: GAGCTCATAGCCAATAAGCCAGAATTTGATTGTCTT...CTCGCAATCATGTTTGTTCTGCTTTATGTTGTTAGGCAGGCCTGGTGACATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR-3UTR GCA 90 bp | AAAATGTCACCAGGCCTGCCTAACAACATAAAGCAGAACAAACATGATTGCGAGAAATCAGCCCGATTATaGATCTATTTGCTCTGTTTA | + |
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Preference number: 2 (lower is better) Translates to: KMSPGLPNNIKQNKHDCEKSARL*IYLLCL Trigger: TAAACAGAGCAAATAGATGCATAATCGGGCTGATTT...CTCGCAATCATGTTTGTTCTGCTTTATGTTGTTAGGCAGGCCTGGTGACATTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR-3UTR GCA 90 bp | ACCTCAGGCACTGCAGCACATGACCTTAAAGTATTAACATTTTATCTTGACCTGAAATCAGCCCGATTATaGATCTATTTGCTCTGTTTA | + |
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Preference number: 2 (lower is better) Translates to: TSGTAAHDLKVLTFYLDLKSARL*IYLLCL Trigger: TAAACAGAGCAAATAGATGCATAATCGGGCTGATTT...CAGGTCAAGATAAAATGTTAATACTTTAAGGTCATGTGCTGCAGTGCCTGAGGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR CCA 72 bp | CGAATGGCTGGCAGTTTTCCAGCTCACACTTTCCCGTaGTGGCGTACCTCGTATGTCCGATTCCAAGGTTTG | + |
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Preference number: 3 (lower is better) Translates to: RMAGSFPAHTFP*WRTSYVRFQGL Trigger: CAAACCTTGGAATCGGACATACGAGGTACGCCACCACGGGAAAGTGTGAGCTGGAAAACTGCCAGCCATTCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR-3UTR CAA 90 bp | CACACTTTCCCGTGGTGGCGTACCTCGTATGTCCGATTCCAAGGTTTGAGTCATAAAGCAAGTATAGGGTaGGTCAGTGGTGGCGCACGC | + |
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Preference number: 3 (lower is better) Translates to: HTFPWWRTSYVRFQGLSHKASIG*VSGGAR Trigger: GCGTGCGCCACCACTGACCAACCCTATACTTGCTTT...ATGACTCAAACCTTGGAATCGGACATACGAGGTACGCCACCACGGGAAAGTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR CCA 72 bp | ATGGCTGGCAGTTTTCCAGCTCACACTTTCCCGTGGTaGCGTACCTCGTATGTCCGATTCCAAGGTTTGAGT | + |
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Preference number: 3 (lower is better) Translates to: MAGSFPAHTFPW*RTSYVRFQGLS Trigger: ACTCAAACCTTGGAATCGGACATACGAGGTACGCCACCACGGGAAAGTGTGAGCTGGAAAACTGCCAGCCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR-3UTR CAA 90 bp | CGCCTGTGTCTATGCCATACGATAACCTCAGGCACTGCAGCACATGACCTTAAAAAGCCCAGGTTCGCCTaGAACTCAGGATTCTGCCTC | + |
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Preference number: 3 (lower is better) Translates to: RLCLCHTITSGTAAHDLKKPRFA*NSGFCL Trigger: GAGGCAGAATCCTGAGTTCAAGGCGAACCTGGGCTT...TTTAAGGTCATGTGCTGCAGTGCCTGAGGTTATCGTATGGCATAGACACAGGCG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR-3UTR CAA 90 bp | CTACAGTCTGGAAGCAACACATCTGTCCAGGCAGCTACCATTCCAGCTCCACAGAGCATCATCTTTTTCTaGAGGAGGGGTGTATGCGAG | + |
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Preference number: 3 (lower is better) Translates to: LQSGSNTSVQAATIPAPQSIIFF*RRGVCE Trigger: CTCGCATACACCCCTCCTCAAGAAAAAGATGATGCT...CTGTGGAGCTGGAATGGTAGCTGCCTGGACAGATGTGTTGCTTCCAGACTGTAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR GCA 72 bp | CCTCAAGCATGGTTCTGGGAACTGCCACTAACCCCCTaGCTTCTCTCGAGTGAAAAGTCAGTCCTTGTACAA | + |
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Preference number: 3 (lower is better) Translates to: PQAWFWELPLTP*LLSSEKSVLVQ Trigger: TTGTACAAGGACTGACTTTTCACTCGAGAGAAGGCAGGGGGTTAGTGGCAGTTCCCAGAACCATGCTTGAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR CCA 72 bp | TTCTCATATAAAAGCAAGTATAGGGTTGGTCAGTGGTaGCGCACGCCTTTAATCCCAGCACTGGGGAGGCAG | + |
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Preference number: 3 (lower is better) Translates to: FSYKSKYRVGQW*RTPLIPALGRQ Trigger: CTGCCTCCCCAGTGCTGGGATTAAAGGCGTGCGCCACCACTGACCAACCCTATACTTGCTTTTATATGAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR CCA 72 bp | CACAGCTATTTTTCCGTGAAGCGTCTCAACTACGAATaGCTGGCAGTTTTCCAGCTCACACTTTCCCGTGGT | + |
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Preference number: 3 (lower is better) Translates to: HSYFSVKRLNYE*LAVFQLTLSRG Trigger: ACCACGGGAAAGTGTGAGCTGGAAAACTGCCAGCCATTCGTAGTTGAGACGCTTCACGGAAAAATAGCTGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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| 3UTR-3UTR CAA 90 bp | AAAATGTCACCAGGCCTGCCTAACAACATAAAGCAGAACAAACATGATTGCGAGAAGCCCAGGTTCGCCTaGAACTCAGGATTCTGCCTC | + |
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Preference number: 3 (lower is better) Translates to: KMSPGLPNNIKQNKHDCEKPRFA*NSGFCL Trigger: GAGGCAGAATCCTGAGTTCAAGGCGAACCTGGGCTT...CTCGCAATCATGTTTGTTCTGCTTTATGTTGTTAGGCAGGCCTGGTGACATTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR GCA 72 bp | GGCCTGCCTAACAACATAAAGCAGAACAAACATGATTaGGAGCTAACACTTGGGTACAGGCAATCTAATTCC | + |
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Preference number: 3 (lower is better) Translates to: GLPNNIKQNKHD*ELTLGYRQSNS Trigger: GGAATTAGATTGCCTGTACCCAAGTGTTAGCTCGCAATCATGTTTGTTCTGCTTTATGTTGTTAGGCAGGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR-3UTR CAA 90 bp | ACCTCAGGCACTGCAGCACATGACCTTAAAGTATTAACATTTTATCTTGACCTGGAGAGGCTTTTTATCTaGAGACAGGAAAGCCCAGGT | + |
|
Preference number: 3 (lower is better) Translates to: TSGTAAHDLKVLTFYLDLERLFI*RQESPG Trigger: ACCTGGGCTTTCCTGTCTCAAGATAAAAAGCCTCTC...CAGGTCAAGATAAAATGTTAATACTTTAAGGTCATGTGCTGCAGTGCCTGAGGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR CCA 72 bp | ATATTTTTAGTCATTCTGGTACATCCCCAAGAGAGATaGGAAAGGACTGCAAAGCTGTCCATTTCCCTCCAT | + |
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Preference number: 3 (lower is better) Translates to: IFLVILVHPQER*ERTAKLSISLH Trigger: ATGGAGGGAAATGGACAGCTTTGCAGTCCTTTCCCATCTCTCTTGGGGATGTACCAGAATGACTAAAAATAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR-3UTR CAA 90 bp | AAAATGTCACCAGGCCTGCCTAACAACATAAAGCAGAACAAACATGATTGCGAGGCCATAATTACAGGCTaGACTGTACAGACTAGATAC | + |
|
Preference number: 3 (lower is better) Translates to: KMSPGLPNNIKQNKHDCEAIITG*TVQTRY Trigger: GTATCTAGTCTGTACAGTCAAGCCTGTAATTATGGC...CTCGCAATCATGTTTGTTCTGCTTTATGTTGTTAGGCAGGCCTGGTGACATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR-3UTR CAA 90 bp | AACAACATAAAGCAGAACAAACATGATTGCGAGCTAACACTTGGGTACAGGCAAGCCATAATTACAGGCTaGACTGTACAGACTAGATAC | + |
|
Preference number: 3 (lower is better) Translates to: NNIKQNKHDCELTLGYRQAIITG*TVQTRY Trigger: GTATCTAGTCTGTACAGTCAAGCCTGTAATTATGGC...TTGCCTGTACCCAAGTGTTAGCTCGCAATCATGTTTGTTCTGCTTTATGTTGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR TCA 72 bp | AGATACCTATGGGGCACAATGAACTCAAATTCTTCATaGAACTTTATAAAGCCCCTGTACATAACAGCCCTA | + |
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Preference number: 3 (lower is better) Translates to: RYLWGTMNSNSS*NFIKPLYITAL Trigger: TAGGGCTGTTATGTACAGGGGCTTTATAAAGTTTCATGAAGAATTTGAGTTCATTGTGCCCCATAGGTATCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR CAA 72 bp | GCTTTTTATCTTGAGACAGGAAAGCCCAGGTTCGCCTaGAACTCAGGATTCTGCCTCAGCTTCCGACGTAGG | + |
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Preference number: 4 (lower is better) Translates to: AFYLETGKPRFA*NSGFCLSFRRR Trigger: CCTACGTCGGAAGCTGAGGCAGAATCCTGAGTTCAAGGCGAACCTGGGCTTTCCTGTCTCAAGATAAAAAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| CDS-3UTR TCA 90 bp | ACCTCAGGCACTGCAGCACATGACCTTAAAGTATTAACATTTTATCTTGACCTGATACCAGCGCTCTCCTaGCCTCGGTGCTGTAGCCCC | + |
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Preference number: 4 (lower is better) Translates to: TSGTAAHDLKVLTFYLDLIPALS*PRCCSP Trigger: GGGGCTACAGCACCGAGGTCAGGAGAGCGCTGGTAT...CAGGTCAAGATAAAATGTTAATACTTTAAGGTCATGTGCTGCAGTGCCTGAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140076.2 |
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| CDS-3UTR GCA 90 bp | AAAATGTCACCAGGCCTGCCTAACAACATAAAGCAGAACAAACATGATTGCGAGTGCGGCACATCTAGCTaGGTGGGCCAGTCTCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: KMSPGLPNNIKQNKHDCECGTSS*VGQSPE Trigger: TTCTGGAGACTGGCCCACGCAGCTAGATGTGCCGCA...CTCGCAATCATGTTTGTTCTGCTTTATGTTGTTAGGCAGGCCTGGTGACATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| CDS-3UTR GCA 90 bp | ACAGGCTTGACTGTACAGACTAGATACCTATGGGGCACAATGAACTCAAATTCTTGCGGCACATCTAGCTaGGTGGGCCAGTCTCCAGAA | + |
|
Preference number: 4 (lower is better) Translates to: TGLTVQTRYLWGTMNSNSCGTSS*VGQSPE Trigger: TTCTGGAGACTGGCCCACGCAGCTAGATGTGCCGCA...AGAATTTGAGTTCATTGTGCCCCATAGGTATCTAGTCTGTACAGTCAAGCCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| CDS-3UTR TCA 90 bp | ACCTCAGGCACTGCAGCACATGACCTTAAAGTATTAACATTTTATCTTGACCTGCAGGGTACTGCCCAGTaGGGCAAGCTGTACAGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: TSGTAAHDLKVLTFYLDLQGTAQ*GKLYSV Trigger: GACACTGTACAGCTTGCCTCACTGGGCAGTACCCTG...CAGGTCAAGATAAAATGTTAATACTTTAAGGTCATGTGCTGCAGTGCCTGAGGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140076.2 |
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| CDS-3UTR GCA 90 bp | CGCCTGTGTCTATGCCATACGATAACCTCAGGCACTGCAGCACATGACCTTAAAAGACCCATTCCCTTATaGACCCTGAATTTAGGCACT | + |
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Preference number: 4 (lower is better) Translates to: RLCLCHTITSGTAAHDLKRPIPL*TLNLGT Trigger: AGTGCCTAAATTCAGGGTGCATAAGGGAATGGGTCT...TTTAAGGTCATGTGCTGCAGTGCCTGAGGTTATCGTATGGCATAGACACAGGCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140076.2 |
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| CDS-3UTR TCA 90 bp | CGCCTGTGTCTATGCCATACGATAACCTCAGGCACTGCAGCACATGACCTTAAAATATTTTATTGGTGGTaGAGCGACTCGAATGTGCAC | + |
|
Preference number: 4 (lower is better) Translates to: RLCLCHTITSGTAAHDLKIFYWW*SDSNVH Trigger: GTGCACATTCGAGTCGCTTCACCACCAATAAAATAT...TTTAAGGTCATGTGCTGCAGTGCCTGAGGTTATCGTATGGCATAGACACAGGCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140076.2 |
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| CDS-3UTR CCA 90 bp | AAAATGTCACCAGGCCTGCCTAACAACATAAAGCAGAACAAACATGATTGCGAGCTGCACTCCCATCACTaGTCACAATACCAGCGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: KMSPGLPNNIKQNKHDCELHSHH*SQYQRS Trigger: AGAGCGCTGGTATTGTGACCAGTGATGGGAGTGCAG...CTCGCAATCATGTTTGTTCTGCTTTATGTTGTTAGGCAGGCCTGGTGACATTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140076.2 |
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| CDS-3UTR CCA 90 bp | CGCCTGTGTCTATGCCATACGATAACCTCAGGCACTGCAGCACATGACCTTAAATCTTGCTACCCAGTCTaGAGCATCATCTTTTTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: RLCLCHTITSGTAAHDLKSCYPV*SIIFFL Trigger: CAAGAAAAAGATGATGCTCCAGACTGGGTAGCAAGA...TTTAAGGTCATGTGCTGCAGTGCCTGAGGTTATCGTATGGCATAGACACAGGCG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140076.2 |
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| CDS-3UTR TCA 90 bp | AACAACATAAAGCAGAACAAACATGATTGCGAGCTAACACTTGGGTACAGGCAAAAAGCTGCAAGACTCTaGGGACACCACCCATCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: NNIKQNKHDCELTLGYRQKAARL*GHHPSF Trigger: GAAGGATGGGTGGTGTCCTCAGAGTCTTGCAGCTTT...TTGCCTGTACCCAAGTGTTAGCTCGCAATCATGTTTGTTCTGCTTTATGTTGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140076.2 |
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| CDS-3UTR CCA 90 bp | ACAGGCTTGACTGTACAGACTAGATACCTATGGGGCACAATGAACTCAAATTCTACCAGTTCCCCGTTATaGGCCACAGCTATTTTTCCG | + |
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Preference number: 4 (lower is better) Translates to: TGLTVQTRYLWGTMNSNSTSSPL*ATAIFP Trigger: CGGAAAAATAGCTGTGGCCCATAACGGGGAACTGGT...AGAATTTGAGTTCATTGTGCCCCATAGGTATCTAGTCTGTACAGTCAAGCCTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000140076.2 |
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| CDS-3UTR CCA 90 bp | ACCTCAGGCACTGCAGCACATGACCTTAAAGTATTAACATTTTATCTTGACCTGCACTATCAGAGGACGTaGAAAGCCCAATACCCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: TSGTAAHDLKVLTFYLDLHYQRT*KAQYPA Trigger: GGCAGGGTATTGGGCTTTCCACGTCCTCTGATAGTG...CAGGTCAAGATAAAATGTTAATACTTTAAGGTCATGTGCTGCAGTGCCTGAGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140076.2 |
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| CDS-3UTR GCA 90 bp | ACCTCAGGCACTGCAGCACATGACCTTAAAGTATTAACATTTTATCTTGACCTGCCTGAATTTAGGCACTaGACTCCCATCACTGGTCAC | + |
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Preference number: 4 (lower is better) Translates to: TSGTAAHDLKVLTFYLDLPEFRH*TPITGH Trigger: GTGACCAGTGATGGGAGTGCAGTGCCTAAATTCAGG...CAGGTCAAGATAAAATGTTAATACTTTAAGGTCATGTGCTGCAGTGCCTGAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140076.2 |
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| CDS-3UTR GCA 90 bp | ACCTCAGGCACTGCAGCACATGACCTTAAAGTATTAACATTTTATCTTGACCTGGAAGCGACTCGAATGTaGACCTCTTTTGCACCGGAT | + |
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Preference number: 4 (lower is better) Translates to: TSGTAAHDLKVLTFYLDLEATRM*TSFAPD Trigger: ATCCGGTGCAAAAGAGGTGCACATTCGAGTCGCTTC...CAGGTCAAGATAAAATGTTAATACTTTAAGGTCATGTGCTGCAGTGCCTGAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140076.2 |
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| CDS-3UTR CCA 90 bp | CGCCTGTGTCTATGCCATACGATAACCTCAGGCACTGCAGCACATGACCTTAAAGTCTCCGTTAGACCTTaGAATTATATCAAGAGTTCT | + |
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Preference number: 4 (lower is better) Translates to: RLCLCHTITSGTAAHDLKVSVRP*NYIKSS Trigger: AGAACTCTTGATATAATTCCAAGGTCTAACGGAGAC...TTTAAGGTCATGTGCTGCAGTGCCTGAGGTTATCGTATGGCATAGACACAGGCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140076.2 |
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| CDS-3UTR TCA 90 bp | AAAGGCTCCAGATATATTTTTAGTCATTCTGGTACATCCCCAAGAGAGATGGGAGCATCATCTTTTTCTTaGGGAGGGGTGTATGCGAGT | + |
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Preference number: 4 (lower is better) Translates to: KGSRYIFSHSGTSPREMGASSFS*GGVYAS Trigger: ACTCGCATACACCCCTCCTCAAGAAAAAGATGATGC...TCCCATCTCTCTTGGGGATGTACCAGAATGACTAAAAATATATCTGGAGCCTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000140076.2 |
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| CDS-3UTR GCA 90 bp | AAAGGCTCCAGATATATTTTTAGTCATTCTGGTACATCCCCAAGAGAGATGGGAAGTCTCCAGAAGCGATaGACCCAAACACACCACATT | + |
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Preference number: 4 (lower is better) Translates to: KGSRYIFSHSGTSPREMGSLQKR*TQTHHI Trigger: AATGTGGTGTGTTTGGGTGCATCGCTTCTGGAGACT...TCCCATCTCTCTTGGGGATGTACCAGAATGACTAAAAATATATCTGGAGCCTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| CDS-3UTR GCA 90 bp | AACAACATAAAGCAGAACAAACATGATTGCGAGCTAACACTTGGGTACAGGCAAAGTCTCCAGAAGCGATaGACCCAAACACACCACATT | + |
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Preference number: 4 (lower is better) Translates to: NNIKQNKHDCELTLGYRQSLQKR*TQTHHI Trigger: AATGTGGTGTGTTTGGGTGCATCGCTTCTGGAGACT...TTGCCTGTACCCAAGTGTTAGCTCGCAATCATGTTTGTTCTGCTTTATGTTGTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| 3UTR CAA 72 bp | TGGAAGAATCTTAAGGTCAAGGCCATAATTACAGGCTaGACTGTACAGACTAGATACCTATGGGGCACAATG | + |
|
Preference number: 4 (lower is better) Translates to: WKNLKVKAIITG*TVQTRYLWGTM Trigger: CATTGTGCCCCATAGGTATCTAGTCTGTACAGTCAAGCCTGTAATTATGGCCTTGACCTTAAGATTCTTCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000140076.2 ENSMUST00000155272.8 |
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| CDS-3UTR TCA 90 bp | AACAACATAAAGCAGAACAAACATGATTGCGAGCTAACACTTGGGTACAGGCAAGAGTTTTATGATGGGTaGGATAGTATTGCCCCTCAC | + |
|
Preference number: 4 (lower is better) Translates to: NNIKQNKHDCELTLGYRQEFYDG*DSIAPH Trigger: GTGAGGGGCAATACTATCTCACCCATCATAAAACTC...TTGCCTGTACCCAAGTGTTAGCTCGCAATCATGTTTGTTCTGCTTTATGTTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140076.2 |
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| CDS-3UTR CCA 90 bp | AAAATGTCACCAGGCCTGCCTAACAACATAAAGCAGAACAAACATGATTGCGAGGTGTATGCGAGTAACTaGGTAATCATTTCACTATCA | + |
|
Preference number: 4 (lower is better) Translates to: KMSPGLPNNIKQNKHDCEVYASN*VIISLS Trigger: TGATAGTGAAATGATTACCCAGTTACTCGCATACAC...CTCGCAATCATGTTTGTTCTGCTTTATGTTGTTAGGCAGGCCTGGTGACATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140076.2 |
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| CDS-3UTR TCA 90 bp | AACAACATAAAGCAGAACAAACATGATTGCGAGCTAACACTTGGGTACAGGCAATCCGATTCCAAGGTTTaGGTCATACAATTTCTTCAA | + |
|
Preference number: 4 (lower is better) Translates to: NNIKQNKHDCELTLGYRQSDSKV*VIQFLQ Trigger: TTGAAGAAATTGTATGACTCAAACCTTGGAATCGGA...TTGCCTGTACCCAAGTGTTAGCTCGCAATCATGTTTGTTCTGCTTTATGTTGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140076.2 |
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| CDS-3UTR CAA 90 bp | CGCCTGTGTCTATGCCATACGATAACCTCAGGCACTGCAGCACATGACCTTAAAAGCATCATCTTTTTCTaGAGGAGGGGTGTATGCGAG | + |
|
Preference number: 5 (lower is better) Translates to: RLCLCHTITSGTAAHDLKSIIFF*RRGVCE Trigger: CTCGCATACACCCCTCCTCAAGAAAAAGATGATGCT...TTTAAGGTCATGTGCTGCAGTGCCTGAGGTTATCGTATGGCATAGACACAGGCG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000140076.2 |
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| CDS GCA 72 bp | CAGTTCCAGGACAGCCAGTCACAGAGAAACTGTCGGTaGTGTAGCCCCACGAGTCCCAGAGTGATCACATGC | + |
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Preference number: 6 (lower is better) Translates to: QFQDSQSQRNCR*CSPTSPRVITC Trigger: GCATGTGATCACTCTGGGACTCGTGGGGCTACAGCACCGACAGTTTCTCTGTGACTGGCTGTCCTGGAACTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000155272.8 |
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